Citrus Sinensis ID: 012762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MQPSAEDTAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccEEEEcccccEEEEEEEEccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEEEccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHEEEEcccccccEEEEEEEcccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEEEEEcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEccccccEEccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEccccccEccccccHHHccHHHHccccEccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHccccccHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqpsaedtaedpdnlsftstttnsgsettwttsgsnpssstpsaakthhapprcnddpcwKAIKEATSegnnnnnnnpltlsdlrfvhrlgsgdigSVYLVQLKskssnngcffaakvmdkrelVSRNKESRARIEREILEmldhpflptlyatldcprwsclltefcpggdlhvlrqrqpdkrfheSAVRFYASEVVVALEFLHMMGIiyrdlkpenvlvrsdghimltdfdlslkgdnststaqlvsdqspptgdqqpndcavdqppfgnssciipncivpavsclhpkrrrkkklgnpgtpeivaepldvrsmsfvgtheylapeiisgeghgnavdwWTLGIFIFELfygttpfkgidhELTLANVVARAlefpkepsvpgpakDLIAQLLvkdptrrmgskmGATAIKRHQFFNGVNWALlrcakppfiprpvtcrdltttnssidnsieyy
Flexible Loop (DISEMBL)
mqpsaedtaedpdnlsftstttnsgsettwttsgsnpssstpsaakthhapprcnDDPCWKAIKEAtsegnnnnnnnPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFaakvmdkrelvsrnKESRARIEREIlemldhpfLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHpkrrrkkklgnpgtpeivaepldvrsMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFpkepsvpgpakDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPfiprpvtcrdltttnssidnsieyy
Low Complexity Region (SEG)
MQPSAEDTAEDPDNLsftstttnsgsettwttsgsnpssstpsaaktHHAPPRCNDDPCWKAIKEATSEGnnnnnnnPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY
Disordered region (IsUnstruct)
**********************************************************************************DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK************RIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS***********************************GNSSCIIPNCIVPAVSCL**********************LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF***********DLIAQLLVK*********MGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLT*************
Disordered Region (DISOPRED)
**********************************************************************************DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST*********************************************************************DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSI****EYY
Disordered Region (DISEMBL)
**************LSFT**********************************RCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN********************NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY
Disordered Region (DISPRO)
*********************************************************PCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL*************************S*****************************TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPSAEDTAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
A2YBX5	589	Protein kinase G11A OS=Or	N/A	no	0.857	0.665	0.515	1e-113
Q0DCT8	589	Protein kinase G11A OS=Or	no	no	0.857	0.665	0.515	1e-113
Q9LFA2	934	Serine/threonine-protein	no	no	0.800	0.391	0.518	1e-110
Q05999	578	Serine/threonine-protein	no	no	0.829	0.655	0.502	1e-109
P15792	609	Protein kinase PVPK-1 OS=	N/A	no	0.846	0.635	0.495	1e-107
Q64FQ2	525	Protein kinase PINOID 2 O	no	no	0.905	0.788	0.423	1e-103
Q2QM77	484	Protein kinase PINOID OS=	no	no	0.776	0.733	0.484	1e-100
O64682	438	Protein kinase PINOID OS=	no	no	0.894	0.933	0.433	4e-96
Q94E49	493	Protein kinase PINOID 2 O	no	no	0.807	0.748	0.447	1e-94
Q2RBR1	921	Phototropin-1B OS=Oryza s	no	no	0.739	0.366	0.450	3e-87

>sp|A2YBX5|G11A_ORYSI Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/423 (51%), Positives = 276/423 (65%), Gaps = 31/423 (7%)

Query: 28  TTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFV 87
           T+   S  +  SS  S  K H A     +D  W+AI+           +  L LS  + +
Sbjct: 150 TSSDVSDESACSSISSVTKPHKA-----NDSRWEAIQMI------RTRDGILGLSHFKLL 198

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            +LG GDIGSVYL +L    S    +FA KVMDK  L SR K  RA+ E+EIL+ LDHPF
Sbjct: 199 KKLGCGDIGSVYLSELNGTKS----YFAMKVMDKASLASRKKLLRAQTEKEILQCLDHPF 254

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           LPTLY   +  ++SCL+ EFCPGGDLH LRQRQ  K F E AV+FY +E+++A+E+LHM+
Sbjct: 255 LPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAMEYLHML 314

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA-VD 266
           GIIYRDLKPENVLVR DGHIML+DFDLSL+   S +   L+   +P     + N+ A   
Sbjct: 315 GIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPT---LIRSSNPDAEALRKNNQAYCV 371

Query: 267 QPPFGNSSCII-PNCIVPAVSCLHPK--------RRRKKKLGNPGTP--EIVAEPLDVRS 315
           QP     SC+I P+C  P  +C  P+        R+ K ++ N  +P  E++AEP D RS
Sbjct: 372 QPACVEPSCMIQPSCATP-TTCFGPRFFSKSKKDRKPKPEVVNQVSPWPELIAEPSDARS 430

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           MSFVGTHEYLAPEII GEGHG+AVDWWT GIF++EL +G TPFKG  +  TL NV+ + L
Sbjct: 431 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPL 490

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
            FP+ P V   A+DLI  LLVK+P +R+G K GAT IK+H FF GVNWAL+RCA PP +P
Sbjct: 491 RFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVP 550

Query: 436 RPV 438
           RPV
Sbjct: 551 RPV 553

May play a role in the regulation of metabolism and signal transduction processes.
Oryza sativa subsp. indica (taxid: 39946)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q0DCT8|G11A_ORYSJ Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/423 (51%), Positives = 276/423 (65%), Gaps = 31/423 (7%)

Query: 28  TTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFV 87
           T+   S  +  SS  S  K H A     +D  W+AI+           +  L LS  + +
Sbjct: 150 TSSDVSDESACSSISSVTKPHKA-----NDSRWEAIQMI------RTRDGILGLSHFKLL 198

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            +LG GDIGSVYL +L    S    +FA KVMDK  L SR K  RA+ E+EIL+ LDHPF
Sbjct: 199 KKLGCGDIGSVYLSEL----SGTKSYFAMKVMDKASLASRKKLLRAQTEKEILQCLDHPF 254

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           LPTLY   +  ++SCL+ EFCPGGDLH LRQRQ  K F E AV+FY +E+++A+E+LHM+
Sbjct: 255 LPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQRGKYFPEQAVKFYVAEILLAMEYLHML 314

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA-VD 266
           GIIYRDLKPENVLVR DGHIML+DFDLSL+   S +   L+   +P     + N+ A   
Sbjct: 315 GIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPT---LIRSSNPDAEALRKNNQAYCV 371

Query: 267 QPPFGNSSCII-PNCIVPAVSCLHPK--------RRRKKKLGNPGTP--EIVAEPLDVRS 315
           QP     SC+I P+C  P  +C  P+        R+ K ++ N  +P  E++AEP D RS
Sbjct: 372 QPACVEPSCMIQPSCATP-TTCFGPRFFSKSKKDRKPKPEVVNQVSPWPELIAEPSDARS 430

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           MSFVGTHEYLAPEII GEGHG+AVDWWT GIF++EL +G TPFKG  +  TL NV+ + L
Sbjct: 431 MSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVIGQPL 490

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
            FP+ P V   A+DLI  LLVK+P +R+G K GAT IK+H FF GVNWAL+RCA PP +P
Sbjct: 491 RFPEYPVVSFSARDLIRGLLVKEPQQRLGCKRGATEIKQHPFFEGVNWALIRCASPPEVP 550

Query: 436 RPV 438
           RPV
Sbjct: 551 RPV 553

May play a role in the regulation of metabolism and signal transduction processes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFA2|KIPK_ARATH Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/403 (51%), Positives = 254/403 (63%), Gaps = 37/403 (9%)

Query: 52  PRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
           P  + D  W+AIK    +  +      L L     + +LG GDIG+VYL +L        
Sbjct: 512 PHMSMDVRWEAIKHIKVQYGS------LGLRHFNLLKKLGCGDIGTVYLAEL----IGTN 561

Query: 112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
           C FA KVMD   L  R K  RA+ EREIL+MLDHPFLPTLYA       SCL+ E+CPGG
Sbjct: 562 CLFAIKVMDNEFLARRKKSPRAQAEREILKMLDHPFLPTLYAQFTSDNLSCLVMEYCPGG 621

Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLHVLRQ+Q  + F E A RFY +E+++ALE+LHM+GIIYRDLKPEN+LVR DGHIMLTD
Sbjct: 622 DLHVLRQKQLGRCFPEPAARFYVAEILLALEYLHMLGIIYRDLKPENILVREDGHIMLTD 681

Query: 232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVP---AVSCL 288
           FDLSL+         LV   SPP       D A    P+  S+CI P CI      VSC 
Sbjct: 682 FDLSLR---CAVNPTLVRSNSPPG-----KDPARISGPYNTSNCIQPFCITEPSCQVSCF 733

Query: 289 HPK------RRRKKKLGN----------PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG 332
            P+      + RK K G+             P++VAEP + RS SFVGTHEYLAPEII G
Sbjct: 734 SPRLSSNQQQGRKPKRGDHLSKTQQHLSRSLPQLVAEPTEARSNSFVGTHEYLAPEIIKG 793

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA 392
           EGHG AVDWWT G+ ++EL YG TPFKG +++ TLANVV + L+FP  P V   AKDLI 
Sbjct: 794 EGHGAAVDWWTFGVLLYELLYGKTPFKGYNNDETLANVVLQNLKFPDSPLVSFQAKDLIR 853

Query: 393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
            LLVK+P  R+GS+ G+  IKRH FF G+NWAL+RCA PP +P
Sbjct: 854 GLLVKEPENRLGSEKGSVEIKRHPFFEGLNWALIRCAIPPELP 896

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05999|KPK7_ARATH Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/404 (50%), Positives = 263/404 (65%), Gaps = 25/404 (6%)

Query: 49  HAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS 108
           + P R N+D  W AI+E  S   ++     L   D + + +LG GDIG+VYL +L     
Sbjct: 152 YKPHRDNNDKRWVAIQEVRSRVGSS-----LEAKDFKLIKKLGGGDIGNVYLAEL----I 202

Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
             G  FA KVM+K  + +R K  RA+ E+EIL+ LDHPFLPTLY+  +    SCL+ EFC
Sbjct: 203 GTGVSFAVKVMEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFC 262

Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
           PGGDLH LRQ+Q  K F E A RFY +EV++A+E+LHM+GIIYRDLKPENVLVR DGHIM
Sbjct: 263 PGGDLHSLRQKQRGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIM 322

Query: 229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPAVSC 287
           L+DFDLSL+   S +  +  +     T + + +   +       SSCI+ P+CI P   C
Sbjct: 323 LSDFDLSLRCAVSPTLVRFAAI----TLESKSSSYCIQPTCVDQSSCIVQPDCIQPV--C 376

Query: 288 LHPK---RRRKKKLGNPGT------PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNA 338
             P+   + + +K  N  +      PE++AEP   RSMSFVGTHEYLAPEII GEGHG+A
Sbjct: 377 FTPRFLSKGKHRKKSNDMSRQIRPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSA 436

Query: 339 VDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD 398
           VDWWT GIF++EL +G TPF+G D+  TL NVV + L FP+ P+V   A+DLI  LLVK+
Sbjct: 437 VDWWTFGIFLYELLFGITPFRGGDNRATLFNVVGQPLRFPEHPNVSFAARDLIRGLLVKE 496

Query: 399 PTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD 442
           P  R+  + GAT IK+H FF  VNWAL+RC  PP IP+PV   D
Sbjct: 497 PQHRLAYRRGATEIKQHPFFQSVNWALIRCTSPPQIPQPVKPMD 540

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15792|KPK1_PHAVU Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1

 Score =  390 bits (1002), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/426 (49%), Positives = 273/426 (64%), Gaps = 39/426 (9%)

Query: 52  PRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
           P   +D  W+AI+   +       +  L +   R + +LG GDIGSVYL +L    ++  
Sbjct: 203 PHKANDIRWEAIQAVRTR------DGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTS-- 254

Query: 112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
             FA KVM+K EL +R K  RA+ EREIL+ LDHPFLPTLY   +   +SCL+ EFCPGG
Sbjct: 255 --FAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETEIFSCLVMEFCPGG 312

Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLH LRQRQP K F E AVRFY +EV+++LE+LHM+GIIYRDLKPENVLVR DGHIML+D
Sbjct: 313 DLHALRQRQPGKYFSEHAVRFYVAEVLLSLEYLHMLGIIYRDLKPENVLVREDGHIMLSD 372

Query: 232 FDLSLKGDNSTSTAQLVSD-QSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPAVSCLH 289
           FDLSL+   S +  +  ++ Q+  +G      C   QP     +C++ P+CI P  SC  
Sbjct: 373 FDLSLRCSVSPTLVKSSNNLQTKSSGY-----CV--QPSCIEPTCVMQPDCIKP--SCFT 423

Query: 290 PK-----------RRRKKKLGNPGTP--EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHG 336
           P+            + K  + N  TP  E++AEP + RSMSFVGTHEYLAPEII GEGHG
Sbjct: 424 PRFLSGKSKKDKKSKPKNDMHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHG 483

Query: 337 NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV 396
           +AVDWWT GIF++EL +G TPFKG  +  TL NV+ + L FP+ P+V   A+DLI  LLV
Sbjct: 484 SAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLV 543

Query: 397 KDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR-----PVTCRDLTTTNSSID 451
           K+P  R+  + GAT IK+H FF  VNWAL+RCA PP +PR     P T +DL    S   
Sbjct: 544 KEPQHRLAYRRGATEIKQHPFFQNVNWALIRCATPPEVPRQVINLPQTEKDLGVKPSGNY 603

Query: 452 NSIEYY 457
             I+++
Sbjct: 604 LDIDFF 609

Phaseolus vulgaris (taxid: 3885)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q64FQ2|PID2_ARATH Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 277/491 (56%), Gaps = 77/491 (15%)

Query: 23  NSGSETTWTTSG--SNPSSSTPSAAKTH------HAPPRCNDDPCWKAIKEATSEGNNNN 74
           +S   T+W +S   ++PS S+ S    H       + P   +   W+A+           
Sbjct: 23  DSSRRTSWLSSSFTASPSCSSISHLSNHGLNSYNQSKPHKANQVAWEAMARL-----RRC 77

Query: 75  NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR 134
               + L   R + RLGSGDIGSVYL Q++   S    F+A KV+DK  +  + K  RA 
Sbjct: 78  CGRAVGLEHFRLLKRLGSGDIGSVYLCQIRG--SPETAFYAMKVVDKEAVAVKKKLGRAE 135

Query: 135 IEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           +E++IL MLDHPF PTLYA  +   +S L+ E+CPGGDL+ +R RQP KRF  S+ RFYA
Sbjct: 136 MEKKILGMLDHPFCPTLYAAFEASHYSFLVMEYCPGGDLYAVRLRQPSKRFTISSTRFYA 195

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
           +E +VALE+LHMMGI+YRDLKPENVL+R DGH+ML+DFDLS K D      Q +SD    
Sbjct: 196 AETLVALEYLHMMGIVYRDLKPENVLIREDGHVMLSDFDLSFKCD---VVPQFLSDNDRD 252

Query: 255 TGDQQPNDCAVDQPPFGNSSCIIPNCIV----PAVSCLHP--KRRRKKKLG--------- 299
            G Q+ +D    +       C  P+C      P +SC  P   RRRKK +          
Sbjct: 253 RGHQEDDDDISIR-----RKCSTPSCTTTPLNPVISCFSPTSSRRRKKNVVTTTIHENAA 307

Query: 300 --------------------------------NPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
                                           + G P I AEP++ RS SFVGTHEYLAP
Sbjct: 308 GTSDSVKSNDVSRTFSRSPSSCSRVSNGLRDISGGCPSIFAEPINARSKSFVGTHEYLAP 367

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-------PKE 380
           E+ISG+GHG+AVDWWT GIF++E+ +G TPFKG ++E TL N++   L F       PKE
Sbjct: 368 EVISGQGHGSAVDWWTYGIFLYEMIFGRTPFKGDNNEKTLVNILKAPLTFPKVIVNSPKE 427

Query: 381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTC 440
                 A+DLI +LLVK+P +R+GS  G+  IKRH+FF GVNWAL+R  KPP++P+  T 
Sbjct: 428 YEDMVNAQDLIIKLLVKNPKKRLGSLKGSIEIKRHEFFEGVNWALIRSIKPPWVPKEETS 487

Query: 441 RDLTTTNSSID 451
                 N S++
Sbjct: 488 HKTKGDNRSVN 498

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Plays a minor role in the regulation of cellular auxin efflux and cotyledon organogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2QM77|PID_ORYSJ Protein kinase PINOID OS=Oryza sativa subsp. japonica GN=PID PE=2 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/390 (48%), Positives = 244/390 (62%), Gaps = 35/390 (8%)

Query: 52  PRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
           P  + D  W AI+ A++      +  PL   D + V R+G GDIG+VYL +L+S      
Sbjct: 84  PHRSGDVAWAAIRAAST-----TSAAPLGPRDFKLVRRIGGGDIGTVYLCRLRSSPERES 138

Query: 112 -CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-PRWSCLLTEFCP 169
            C +A KV+D+R +  + K  RA  E+ IL  LDHPFLPTL+A  D  P +SC + EFCP
Sbjct: 139 PCMYAMKVVDRRAVARKQKLGRAAAEKRILRQLDHPFLPTLFADFDATPHFSCAVMEFCP 198

Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           GGDLH LR R P +RF   + RFYA+EV++A+E+LHMMGI+YRDLKPENVL+R+DGHIML
Sbjct: 199 GGDLHSLRHRMPSRRFPLPSARFYAAEVLLAIEYLHMMGIVYRDLKPENVLIRADGHIML 258

Query: 230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH 289
           TDFDLSL+   S S            GD   +D A      G +SC  P+ ++       
Sbjct: 259 TDFDLSLQSTTSPSL----------DGDTDTDDEAS-----GGASC-FPDHLLRF----- 297

Query: 290 PKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIF 349
             +RR+  +  P  P  VAEP+D RS SFVGTHEY+APE+ SG  HG AVDWW  G+F++
Sbjct: 298 --KRRRNAVAAP-RPRFVAEPVDARSCSFVGTHEYVAPEVASGGAHGAAVDWWAYGVFLY 354

Query: 350 ELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGP----AKDLIAQLLVKDPTRRMGS 405
           EL YG TPF G  +E TL N+V R L FP      GP    A+DLIA+LL KDP  R+GS
Sbjct: 355 ELIYGRTPFAGATNEATLRNIVRRPLAFPSGSGSCGPADADARDLIARLLAKDPAARLGS 414

Query: 406 KMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
           + GA  +K H FF  +N ALLR ++PP +P
Sbjct: 415 RRGAADVKSHPFFKSLNLALLRSSRPPVVP 444

Serine/threonine-protein kinase involved in the regulation of auxin signaling. May control polar auxin transport and probably plays a role in the pattern formation and organogenesis in the rice shoot.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64682|PID_ARATH Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1

 Score =  352 bits (902), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 257/443 (58%), Gaps = 34/443 (7%)

Query: 14  NLSFTSTTTNSGSETTWT---TSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEG 70
           +L  T++  +SG+E+  +    S   P S+ P         P  + D  +  I+    +G
Sbjct: 10  SLGTTNSPISSGTESCSSFSRLSFDAPPSTIPEEESFLSLKPHRSSDFAYAEIRRRKKQG 69

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVMDKRELVSRNK 129
                   LT  D R + R+G+GDIG+VYL +L   +  +   +FA KV+DK  L  + K
Sbjct: 70  --------LTFRDFRLMRRIGAGDIGTVYLCRLAGDEEESRSSYFAMKVVDKEALALKKK 121

Query: 130 ESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA 189
             RA +E+ IL+MLDHPFLPTLYA  +   +SC++ E+C GGDLH LR RQP +RF  S+
Sbjct: 122 MHRAEMEKTILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHRQPHRRFSLSS 181

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS 249
            RFYA+EV+VALE+LHM+GIIYRDLKPEN+LVRSDGHIML+DFDLSL  D   S A + S
Sbjct: 182 ARFYAAEVLVALEYLHMLGIIYRDLKPENILVRSDGHIMLSDFDLSLCSD---SIAAVES 238

Query: 250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE 309
             S P   Q  +                P              R KK      T   VAE
Sbjct: 239 SSSSPENQQLRS----------------PRRFTRLARLFQRVLRSKKVQTLEPTRLFVAE 282

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P+  RS SFVGTHEY+APE+ SG  HGNAVDWW  G+F++E+ YG TPF    +++ L N
Sbjct: 283 PVTARSGSFVGTHEYVAPEVASGGSHGNAVDWWAFGVFLYEMIYGKTPFVAPTNDVILRN 342

Query: 370 VVARALEFPKEPSVPG---PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL 426
           +V R L FP +         A++LI+ LL KDPT+R+GS+ GA  +K H FF G+N+AL+
Sbjct: 343 IVKRQLSFPTDSPATMFELHARNLISGLLNKDPTKRLGSRRGAAEVKVHPFFKGLNFALI 402

Query: 427 RCAKPPFIPRPVTCRDLTTTNSS 449
           R   PP IP  V  + + +   S
Sbjct: 403 RTLTPPEIPSSVVKKPMKSATFS 425

Serine/threonine-protein kinase involved in the regulation of auxin signaling. Acts as a positive regulator of cellular auxin efflux and regulates organ development by enhancing polar auxin transport. Phosphorylates conserved serine residues in the PIN auxin efflux carriers. Phosphorylation of PIN proteins is required and sufficient for apical-basal PIN polarity that enables directional intercellular auxin fluxes, which mediate differential growth, tissue patterning and organogenesis. Acts in association with PIN1 to control the establishment of bilateral symmetry and promotion of cotyledon outgrowth. Regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport. Required for polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response. The protein kinase activity of PID is essential for its auxin efflux regulatory function. PID kinase and PP2A phosphatase activities antagonistically regulate phosphorylation of PIN proteins, affecting PIN sorting.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94E49|PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica GN=PID2 PE=2 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/427 (44%), Positives = 251/427 (58%), Gaps = 58/427 (13%)

Query: 44  AAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQL 103
           A+   + P + N    W+AI+   +          + L   R V RLGSGD+G+VYL +L
Sbjct: 47  ASSCRYKPHKANQAE-WEAIRRLRAGAGR------VGLEHFRLVRRLGSGDLGNVYLCRL 99

Query: 104 KSKSSNN-------GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD 156
           +   S++       GC +A KV+DK  L  R K  RA +ER+IL  LDHPFLPTLYA  +
Sbjct: 100 REPWSSSSMTTTAGGCLYAMKVVDKDALAFRKKLRRAEVERDILRTLDHPFLPTLYADFE 159

Query: 157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP 216
              ++CL+ EFCPGGDLHV RQRQP +RF  S+ RFY +E V+ALE+LHMMG++YRDLKP
Sbjct: 160 ASHYACLVMEFCPGGDLHVARQRQPGRRFTVSSTRFYVAETVLALEYLHMMGVVYRDLKP 219

Query: 217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCI 276
           ENVLVR DGHIML+DFDLSLK            D  P       +  A  +PP    S  
Sbjct: 220 ENVLVRGDGHIMLSDFDLSLK-----------CDVVPKLLRPARSAAAGGKPPLPPPSSC 268

Query: 277 IPNCIVPAVSCL--------HPKR-----------------RRKKKLGNPGTPEIVAEPL 311
           +P  I P +SC+        H K                    + +        +V EP+
Sbjct: 269 VPPTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPV 328

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
             RS SFVGTHEYLAPE+ISG+GHG+AVDWWTLG+F++E+ YG TPFKG  +E TL N++
Sbjct: 329 AARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGVFMYEMLYGRTPFKGESNEKTLINII 388

Query: 372 ARALEFPK--------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
            + + FP+        E      A+DL+ QLL K+P +R+GS MG+  +KRH FF GVNW
Sbjct: 389 KQPVTFPRLAGAAAAGEWEEMKTAQDLMLQLLAKNPKKRLGSTMGSAEVKRHPFFKGVNW 448

Query: 424 ALLRCAK 430
           AL+R  +
Sbjct: 449 ALVRSVR 455

Serine/threonine-protein kinase involved in the regulation of auxin signaling.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2

 Score =  322 bits (826), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/391 (45%), Positives = 225/391 (57%), Gaps = 53/391 (13%)

Query: 52  PRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
           P   D   W+AI++    G +      + L   R V  LGSGD GSV+LV+L     N G
Sbjct: 568 PHMKDTASWRAIQKVLESGES------IGLKHFRPVKPLGSGDTGSVHLVEL----LNTG 617

Query: 112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
            +FA K MDK  +++RNK  RA  ER+IL++LDHPFLPTLYA+       CL+T++CPGG
Sbjct: 618 EYFAMKAMDKSIMLNRNKVHRATAERQILDLLDHPFLPTLYASFQTKTHICLITDYCPGG 677

Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           +L VL   QP K  HE AVRFYA+EVVVALE+LH  GIIYRDLKPEN+L+  DGHI LTD
Sbjct: 678 ELFVLLDNQPLKVLHEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENILLHRDGHISLTD 737

Query: 232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
           FDLS                           C         +SC  P   +P  +     
Sbjct: 738 FDLS---------------------------CL--------TSC-RPQVFLPEDA----- 756

Query: 292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL 351
              KK   N   P   AEP+   S SFVGT EY+APEII+G GH +AVDWW LGI ++E+
Sbjct: 757 -DEKKGRKNGSYPIFFAEPMRA-SNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEM 814

Query: 352 FYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATA 411
            YG TPF+G   + T AN++ + + FP   SV   A+ L+ +LL +DP  R+GS  GA  
Sbjct: 815 LYGYTPFRGKTRQRTFANILHKDIRFPASISVSLAARQLMYRLLHRDPANRLGSYEGANE 874

Query: 412 IKRHQFFNGVNWALLRCAKPPFIPRPVTCRD 442
           IK H FF G+NW L+R   PP +  P+  +D
Sbjct: 875 IKGHPFFRGINWPLIRATAPPKLEIPLFSKD 905

Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
255586454	514	serine/threonine protein kinase, putativ	0.951	0.846	0.695	0.0
224100639	452	predicted protein [Populus trichocarpa]	0.971	0.982	0.690	0.0
225449681	454	PREDICTED: protein kinase G11A-like [Vit	0.960	0.966	0.692	1e-179
224113481	399	predicted protein [Populus trichocarpa]	0.824	0.944	0.760	1e-173
449456110	451	PREDICTED: protein kinase G11A-like [Cuc	0.978	0.991	0.663	1e-172
147864073	450	hypothetical protein VITISV_002764 [Viti	0.960	0.975	0.690	1e-172
449496268	451	PREDICTED: protein kinase G11A-like [Cuc	0.978	0.991	0.659	1e-171
359479468	436	PREDICTED: serine/threonine-protein kina	0.929	0.974	0.698	1e-169
356574649	422	PREDICTED: protein kinase G11A-like [Gly	0.914	0.990	0.642	1e-167
255576359	441	serine/threonine protein kinase, putativ	0.842	0.873	0.699	1e-162

>gi|255586454|ref|XP_002533871.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223526182|gb|EEF28511.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/479 (69%), Positives = 371/479 (77%), Gaps = 44/479 (9%)

Query: 1   MQPSAEDTAEDPDNLSF---------------------TSTTTNSGSETTWTTSGSNPSS 39
           M PS++D A++ DNLS                      T  +T+SGSE TWTTS    + 
Sbjct: 58  MDPSSDDLADELDNLSITSTTTNATTTTTTTTTTTAQETEHSTSSGSEATWTTSNHATTF 117

Query: 40  STPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVY 99
           S     K+HH PP C  D CW AI  +  E      N+ LTL+DLRFVHRLGSGDIGSVY
Sbjct: 118 S-----KSHHPPP-C--DSCWHAILRSNCE------NSTLTLADLRFVHRLGSGDIGSVY 163

Query: 100 LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR 159
           LV+LK     NGC FAAKVMDK+E+ SRNK+SRARIEREILE+LDHPFLPTLYATLD  R
Sbjct: 164 LVELKE---GNGCLFAAKVMDKKEMASRNKDSRARIEREILEILDHPFLPTLYATLDSSR 220

Query: 160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV 219
           WSCLLTEFCPGGDLHVLRQRQPDKRF+E+AVRFYASE+V ALE+LHMMG++YRDLKPENV
Sbjct: 221 WSCLLTEFCPGGDLHVLRQRQPDKRFNEAAVRFYASEIVAALEYLHMMGVVYRDLKPENV 280

Query: 220 LVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT-GDQQPNDCAVDQPPFGNSSCIIP 278
           LVRSDGHIMLTDFDLSLK D+STSTAQ+VSDQ+ P   D  P D     P    SSCIIP
Sbjct: 281 LVRSDGHIMLTDFDLSLKDDSSTSTAQIVSDQNQPIKNDYYPPD----PPQSATSSCIIP 336

Query: 279 NCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNA 338
           NC+VPAVSC HP+RRRK+K    GT EIVAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+A
Sbjct: 337 NCMVPAVSCFHPRRRRKRKSNQRGTVEIVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSA 396

Query: 339 VDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD 398
           VDWWTLGIFIFELFYG TPFKGIDHELTLAN+VARALEFPKEP VP  AKDLI QLLVKD
Sbjct: 397 VDWWTLGIFIFELFYGVTPFKGIDHELTLANIVARALEFPKEPPVPVSAKDLITQLLVKD 456

Query: 399 PTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           P RR+GS MGATAIK HQFFNG NWALLRC  PP++PRPVT        +S +NS+EYY
Sbjct: 457 PIRRLGSTMGATAIKHHQFFNGTNWALLRCRTPPYVPRPVTRPSFIREETS-NNSVEYY 514

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100639|ref|XP_002311957.1| predicted protein [Populus trichocarpa] gi|222851777|gb|EEE89324.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/465 (69%), Positives = 373/465 (80%), Gaps = 21/465 (4%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSA--------AKTHHAPP 52
           M+P  ED  +D DNLS  STTT + +  T  ++GS   ++  ++         K HH PP
Sbjct: 1   MEPVVEDLTDDLDNLSLASTTTTTTAAETRHSTGSGSETTWTTSTSSLVSNSCKPHH-PP 59

Query: 53  RCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC 112
           +C  D CW AI+       +N +N+PLTL+DLRFVH+LGSGDIGSVYLV+LK     NGC
Sbjct: 60  QC--DQCWHAIQ------RDNCDNSPLTLADLRFVHKLGSGDIGSVYLVELKE---GNGC 108

Query: 113 FFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGD 172
            FAAKVMDK+E+ +RNK+SRARIEREILEML+HPFLPTLYATLD PR SCLLTEFCPGGD
Sbjct: 109 LFAAKVMDKKEMATRNKDSRARIEREILEMLEHPFLPTLYATLDSPRRSCLLTEFCPGGD 168

Query: 173 LHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           LHVLRQ+QP++RF E+A+RFYASEVV ALE+LHMMGI+YRDLKPENVLVRSDGHIMLTDF
Sbjct: 169 LHVLRQQQPERRFGEAAIRFYASEVVAALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDF 228

Query: 233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR 292
           DLSLK DNS STAQ++SDQ+ PT      D   D   F  SSCI+P+CIVPAVSC H +R
Sbjct: 229 DLSLKDDNSPSTAQIISDQNQPTTASSTRDYPSDTSQFATSSCILPSCIVPAVSCFHHRR 288

Query: 293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF 352
           +RKKKL   GT EIVAEP+DVRSMSFVGTHEYLAPEI+SGEGHGNAVDWWTLGIF+FE+F
Sbjct: 289 KRKKKLHQRGTLEIVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLGIFMFEMF 348

Query: 353 YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI 412
           YG TPFKG+DHELTLAN+VARALEFPKEPS+P  AKDLI QLL+KDP RR+GS MGATAI
Sbjct: 349 YGVTPFKGMDHELTLANIVARALEFPKEPSIPVLAKDLITQLLIKDPVRRLGSTMGATAI 408

Query: 413 KRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           K HQFF+G+NWALLRC  PP+IPRPVT ++L       +NSIEYY
Sbjct: 409 KHHQFFDGINWALLRCRTPPYIPRPVTYKNLVVAEHG-NNSIEYY 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449681|ref|XP_002264924.1| PREDICTED: protein kinase G11A-like [Vitis vinifera]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/472 (69%), Positives = 368/472 (77%), Gaps = 33/472 (6%)

Query: 1   MQPSAEDTAEDPDNLSFTST------------TTNSGSETTWTTSGSNPSSSTPSAAKTH 48
           MQ  ++D A++ D+LS  ST            +++SGSE TW       SSS P      
Sbjct: 1   MQSCSDDIADEFDSLSLNSTTTTASTTVDIKHSSSSGSEVTWAPPSIATSSSKP------ 54

Query: 49  HAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS 108
           HAP   + DPCW+AI+ A +    +++   L L +LRF+ RLGSGDIGSVYLV+LK    
Sbjct: 55  HAP---SGDPCWQAIRRAQA----SSDGGALALHELRFLRRLGSGDIGSVYLVELKCA-- 105

Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
             GC FAAKVMDK+ELVSR KE RARIEREILEMLDHPFLPTLYATLD PRWSCLLTEFC
Sbjct: 106 -GGCMFAAKVMDKKELVSRYKEGRARIEREILEMLDHPFLPTLYATLDSPRWSCLLTEFC 164

Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
           PGGDLHVLRQRQPDKRFHE+ VRFYASEV+VALE+LHMMGIIYRDLKPENVLVRSDGHIM
Sbjct: 165 PGGDLHVLRQRQPDKRFHEATVRFYASEVIVALEYLHMMGIIYRDLKPENVLVRSDGHIM 224

Query: 229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQ---PNDCAVDQPPFGNSSCIIPNCIVPAV 285
           LTDFDLSLK DNSTSTAQ+VSDQ+P   +      +D   + PPFG SSCIIPNCIVPAV
Sbjct: 225 LTDFDLSLKNDNSTSTAQIVSDQNPACKNSSTYPSSDYPTEPPPFGESSCIIPNCIVPAV 284

Query: 286 SCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLG 345
           SC HP RRR+KK  +    EIVAEP+DVRSMSFVGTHEYLAPEI+SGEGHGNAVDWWTLG
Sbjct: 285 SCFHPIRRRRKKPRHRRALEIVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGNAVDWWTLG 344

Query: 346 IFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS 405
           IFIFE+ YGTTPFKG+D+ELTLAN+VARALEFPKEP VP  AKDLI QLLVK+P+RRMG+
Sbjct: 345 IFIFEMLYGTTPFKGVDNELTLANIVARALEFPKEPWVPAAAKDLITQLLVKEPSRRMGA 404

Query: 406 KMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
            MGATAIK H FFNGVNWALLRC  PP +PRP  C D+ +     D SIEYY
Sbjct: 405 TMGATAIKHHAFFNGVNWALLRCVSPPIVPRP--CNDVVSPQGCTDISIEYY 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113481|ref|XP_002316507.1| predicted protein [Populus trichocarpa] gi|222865547|gb|EEF02678.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/389 (76%), Positives = 327/389 (84%), Gaps = 12/389 (3%)

Query: 49  HAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS 108
           H PP+C  D CW AI+        N  N+PLTL+DLRFVH+LGSGDIGSVYLV LK    
Sbjct: 23  HHPPQC--DECWHAIQ------RENCGNSPLTLADLRFVHKLGSGDIGSVYLVVLKE--- 71

Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
            N C FAAKVMDK+E+ +RNK+SRARIEREILEML+HPFLP LYATLD PRWSCLLTEFC
Sbjct: 72  GNECLFAAKVMDKKEMATRNKDSRARIEREILEMLEHPFLPPLYATLDSPRWSCLLTEFC 131

Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
           PGGDLHVLRQRQPD+RF E+AVRFYASEVV ALE+LHMMGI+YRD+KPENVL+RSDGHIM
Sbjct: 132 PGGDLHVLRQRQPDRRFDEAAVRFYASEVVAALEYLHMMGIVYRDIKPENVLIRSDGHIM 191

Query: 229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCL 288
           LTDFDLSLK DNSTSTAQ++SDQ+PP      +D   D   F  SSCI+PNCIVPAVSCL
Sbjct: 192 LTDFDLSLKDDNSTSTAQIISDQNPPITSST-SDYPSDTSQFATSSCILPNCIVPAVSCL 250

Query: 289 HPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFI 348
            P R+RKKK    GT EIVAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLGIFI
Sbjct: 251 QPCRKRKKKFNQRGTLEIVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFI 310

Query: 349 FELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMG 408
           FE+FYG TPFKG DHELTLANVVARALEFPKEPSVP  AKDLI QLL+KDPTRR+GS MG
Sbjct: 311 FEMFYGVTPFKGTDHELTLANVVARALEFPKEPSVPVFAKDLITQLLIKDPTRRLGSTMG 370

Query: 409 ATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
           ATAIK H FF  +NWALLRC  PP+IP+P
Sbjct: 371 ATAIKHHHFFEEINWALLRCKTPPYIPQP 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456110|ref|XP_004145793.1| PREDICTED: protein kinase G11A-like [Cucumis sativus]

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/461 (66%), Positives = 361/461 (78%), Gaps = 14/461 (3%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTTN----SGSETTWTTSGSNPSSSTPSAAKTHHAPPRCND 56
           M+ S +D A+D  +LSF ST TN    SGSETT T S S  S + PS     HAP   + 
Sbjct: 1   MESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSS--SLNIPSILSKPHAP---SS 55

Query: 57  DPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA 116
           DPCW A+    SE +       L  SDL+F HRLGSGDIGSVYL  LKS +  +GC FAA
Sbjct: 56  DPCWSAVNRIRSESSFRQ----LAFSDLKFFHRLGSGDIGSVYLSGLKS-AGTDGCLFAA 110

Query: 117 KVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL 176
           KVMDK+EL SR+KE RAR EREILE LDHPFLPTLYA++D P+W CLLTEFCPGGDLHVL
Sbjct: 111 KVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVL 170

Query: 177 RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL 236
           RQRQP+KRFHE AVRFYASE+VVA+E+LHMMGI+YRDLKPENVLVRSDGHIMLTDFDLSL
Sbjct: 171 RQRQPNKRFHELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSL 230

Query: 237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK 296
           K + ST+T Q+++ ++P  G     D  +D PPF +SSCI+PNCIVPAVSC +PKR+RKK
Sbjct: 231 KCEESTATPQVINAKNPMNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKK 290

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K G+   PE VAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLG+F+FELFYG T
Sbjct: 291 KSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVT 350

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ 416
           PF+G+D+ELTLAN+VARALEFPKEP+VP  AKDLI+QLL+KDP RR+GS  G++AIK H 
Sbjct: 351 PFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHS 410

Query: 417 FFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           FF GVNWALLRC  PPFIP P +   + +  S  +  ++YY
Sbjct: 411 FFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPVDYY 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864073|emb|CAN83229.1| hypothetical protein VITISV_002764 [Vitis vinifera]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 323/468 (69%), Positives = 368/468 (78%), Gaps = 29/468 (6%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTT--------NSGSETTWTTSGSN---PSSSTPSAAKTHH 49
           M+P  ED+ +D  ++SF STTT        +SGSETTWTT+ S    P++S P A+    
Sbjct: 1   MEPWLEDSTDDSKSMSFNSTTTATDINRSTSSGSETTWTTAASGGFPPATSKPHAS---- 56

Query: 50  APPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSN 109
                + DPCW  I+ A SE    +    L+ SDLRFV RLGSGDIGSVYLV+LK+    
Sbjct: 57  -----SGDPCWDGIRRARSE----SPAGALSFSDLRFVQRLGSGDIGSVYLVELKAA--- 104

Query: 110 NGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP 169
            GC FAAKVMDK+EL  RNKE RAR EREILEMLDHPFLP LYAT+D P+ SCLLTEFCP
Sbjct: 105 EGCSFAAKVMDKKELAGRNKEGRARTEREILEMLDHPFLPALYATIDSPKCSCLLTEFCP 164

Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           GGDLHVLRQRQP KRFHESAVRFYASEVVVALE++HMMGI+YRDLKPENVLVRSDGHIML
Sbjct: 165 GGDLHVLRQRQPAKRFHESAVRFYASEVVVALEYVHMMGIVYRDLKPENVLVRSDGHIML 224

Query: 230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH 289
           TDFDLSLK D+STS AQ++SDQ+PP     P+D   D PPF +SSCI+PNCIVPAVSC H
Sbjct: 225 TDFDLSLKCDHSTSVAQIISDQNPPLA-LPPSDYPADPPPFTSSSCILPNCIVPAVSCFH 283

Query: 290 PKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIF 349
           PKR+RKKK G+ G PE VAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLGIFIF
Sbjct: 284 PKRKRKKKPGHHGGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIF 343

Query: 350 ELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA 409
           EL YG TPF+G+D+ELTLAN+VARALEFPKEP VP   KDLI+QLLVKDP RRMGS MGA
Sbjct: 344 ELLYGVTPFRGVDNELTLANIVARALEFPKEPLVPATTKDLISQLLVKDPARRMGSTMGA 403

Query: 410 TAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           +AIK H FF GVNWALLRC  PPFIP P   RD+ +  S  +  ++YY
Sbjct: 404 SAIKHHPFFQGVNWALLRCTPPPFIPPPFN-RDVVSDESCPETPMDYY 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496268|ref|XP_004160089.1| PREDICTED: protein kinase G11A-like [Cucumis sativus]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 304/461 (65%), Positives = 359/461 (77%), Gaps = 14/461 (3%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTTN----SGSETTWTTSGSNPSSSTPSAAKTHHAPPRCND 56
           M+ S +D A+D  +LSF ST TN    SGSETT T S S  S + PS     HAP   + 
Sbjct: 1   MESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSS--SLNIPSILSKPHAP---SS 55

Query: 57  DPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA 116
           DPCW A+    SE +       L  SDL+F HRLGSGDIGSVYL  LKS +  +GC FAA
Sbjct: 56  DPCWSAVNRIRSESSFRQ----LAFSDLKFFHRLGSGDIGSVYLSGLKS-AGTDGCLFAA 110

Query: 117 KVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL 176
           KVMDK+EL SR+KE RAR EREILE LDHPFLPTLYA++D P+W CLLTEFCPGGDLHVL
Sbjct: 111 KVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVL 170

Query: 177 RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL 236
           RQRQ +KRF E AVRFYASE+VVA+E+LHMMGI+YRDLKPENVLVRSDGHIMLTDFDLSL
Sbjct: 171 RQRQANKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSL 230

Query: 237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK 296
           K + ST+T Q+++ ++P  G     D  +D PPF +SSCI+PNCIVPAVSC +PKR+RKK
Sbjct: 231 KCEESTATPQVINAKNPMNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKK 290

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K G+   PE VAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLG+F+FELFYG T
Sbjct: 291 KSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVT 350

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ 416
           PF+G+D+ELTLAN+VARALEFPKEP+VP  AKDLI+QLL+KDP RR+GS  G++AIK H 
Sbjct: 351 PFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHS 410

Query: 417 FFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           FF GVNWALLRC  PPFIP P +   + +  S  +  ++YY
Sbjct: 411 FFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPVDYY 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479468|ref|XP_002266280.2| PREDICTED: serine/threonine-protein kinase KIPK-like [Vitis vinifera]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 317/454 (69%), Positives = 359/454 (79%), Gaps = 29/454 (6%)

Query: 15  LSFTSTTT--------NSGSETTWTTSGSN---PSSSTPSAAKTHHAPPRCNDDPCWKAI 63
           +SF STTT        +SGSETTWTT+ S    P++S P A+         + DPCW  I
Sbjct: 1   MSFNSTTTATDINRSTSSGSETTWTTAASGGFPPATSKPHAS---------SGDPCWDGI 51

Query: 64  KEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
           + A SE    +    L+ SDLRFV RLGSGDIGSVYLV+LK+     GC FAAK+MDK+E
Sbjct: 52  RRARSE----SPAGALSFSDLRFVQRLGSGDIGSVYLVELKAA---EGCSFAAKIMDKKE 104

Query: 124 LVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDK 183
           L  RNKE RAR EREILEMLDHPFLP LYAT+D P+ SCLLTEFCPGGDLHVLRQRQP K
Sbjct: 105 LAGRNKEGRARTEREILEMLDHPFLPALYATIDSPKCSCLLTEFCPGGDLHVLRQRQPAK 164

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           RFHESAVRFYASEVVVALE++HMMGI+YRDLKPENVLVRSDGHIMLTDFDLSLK D+STS
Sbjct: 165 RFHESAVRFYASEVVVALEYVHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDHSTS 224

Query: 244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT 303
            AQ++SDQ+PP     P+D   D PPF +SSCI+PNCIVPAVSC HPKR+RKKK G+ G 
Sbjct: 225 VAQIISDQNPPLA-LPPSDYPADPPPFTSSSCILPNCIVPAVSCFHPKRKRKKKPGHHGG 283

Query: 304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           PE VAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLGIFIFEL YG TPF+G+D+
Sbjct: 284 PEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELLYGVTPFRGVDN 343

Query: 364 ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
           ELTLAN+VARALEFPKEP VP   KDLI+QLLVKDP RRMGS MGA+AIK H FF GVNW
Sbjct: 344 ELTLANIVARALEFPKEPLVPATTKDLISQLLVKDPARRMGSTMGASAIKHHPFFQGVNW 403

Query: 424 ALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           ALLRC  PPFIP P   RD+ +  S  +  ++YY
Sbjct: 404 ALLRCTPPPFIPPPFN-RDVVSDESCPETPMDYY 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574649|ref|XP_003555458.1| PREDICTED: protein kinase G11A-like [Glycine max]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/461 (64%), Positives = 351/461 (76%), Gaps = 43/461 (9%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCW 60
           M  SAE   ED DN + T+T +     T WT S  +            HAP   + DP W
Sbjct: 1   MHSSAE---EDSDNSATTATAS-----TEWTFSAKS------------HAP---SSDPSW 37

Query: 61  KAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD 120
            AI+              L L DLRFV R+GSGDIGSVYLV+LK  S   GC FAAKVMD
Sbjct: 38  DAIQRG--------GGATLALGDLRFVQRVGSGDIGSVYLVELKGSS---GCLFAAKVMD 86

Query: 121 KRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ 180
           K+ELV+RNK++RA++EREIL+M+DHPFLPTLYA+LD PRWSCLLTEFCPGGDLHVLRQRQ
Sbjct: 87  KKELVARNKDTRAKVEREILQMVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQ 146

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
           PDKRFH +AVRFYASEVVVALE+LHMMGIIYRDLKPENVL+RSDGHIMLTDFDLSLKGD+
Sbjct: 147 PDKRFHLAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKGDD 206

Query: 241 STSTAQLVSDQSPPTGDQQPNDCAVD----QPPFGNSSCIIPNCIVPAVSCLHPKRRRKK 296
           + STAQ+V D+ PP+     N C+ +    Q     SSC++PNCIVP+V C HPKR R K
Sbjct: 207 TASTAQMVFDEDPPS-----NTCSKEHSRKQCTPTMSSCMLPNCIVPSVPCFHPKRGRSK 261

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           +    G+ EI+AEP+++RS SFVGTHEYLAPE+ISGEGHGNAVDWWTLG+FIFE+FYG T
Sbjct: 262 RFSRCGSLEIIAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFEMFYGIT 321

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ 416
           PFKG+++ELTLAN+VARALEFPKEP +PGPA+DLI+QLLVKD T R+GS MGA AIK H 
Sbjct: 322 PFKGLENELTLANIVARALEFPKEPMIPGPARDLISQLLVKDSTMRLGSTMGALAIKHHP 381

Query: 417 FFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           FFNGVNW LLRCA PP+IP    C++L    +  +N+I++Y
Sbjct: 382 FFNGVNWPLLRCATPPYIPSSDKCKELLPLYNCTNNAIDFY 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576359|ref|XP_002529072.1| serine/threonine protein kinase, putative [Ricinus communis] gi|223531484|gb|EEF33316.1| serine/threonine protein kinase, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/393 (69%), Positives = 322/393 (81%), Gaps = 8/393 (2%)

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC------FFAAKVMDKREL 124
           + + ++  L LSDLRF  RLGSGDIGSVYL +LK   ++          FAAKVMDK+EL
Sbjct: 51  HTSKHHQSLCLSDLRFSLRLGSGDIGSVYLAELKKPDTSAASDITDSPIFAAKVMDKKEL 110

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR 184
           VSR+KE RA+ EREILEMLDHPFLP LYA ++  RW CLLTEFC GGDLHVLRQRQP KR
Sbjct: 111 VSRSKEGRAKTEREILEMLDHPFLPCLYACIESQRWLCLLTEFCNGGDLHVLRQRQPLKR 170

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
             +SAVRFYASEVVVALE+LHM+GI+YRDLKPENVLVRSDGHIMLTDFDLSLK D+STST
Sbjct: 171 LEDSAVRFYASEVVVALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSTST 230

Query: 245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP 304
            Q+++ Q+ P    + ND  +D  PF +SSCIIPNCIVPAVSC HPKR+RKKK G+ G P
Sbjct: 231 PQIITSQNTPNAAPK-NDYPIDHRPFTSSSCIIPNCIVPAVSCFHPKRKRKKKTGHRGGP 289

Query: 305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE 364
           E VAEP+DVRSMSFVGTHEYLAPEI+SGEGHG+ VDWWTLGIF+FELFYG TPF+G+DHE
Sbjct: 290 EFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSPVDWWTLGIFMFELFYGVTPFRGLDHE 349

Query: 365 LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA 424
           LTLAN+VARALEFPKEP++P  AKDLI+QLLVKDP RR+GS MGA+AIK H FF GVNWA
Sbjct: 350 LTLANIVARALEFPKEPAIPSTAKDLISQLLVKDPARRLGSTMGASAIKHHPFFQGVNWA 409

Query: 425 LLRCAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
           LLRC +PP++P P T +++ +  S  +  +EYY
Sbjct: 410 LLRCTRPPYVPPPYT-KEIVSDESCPETPVEYY 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2098120	451	AT3G44610 [Arabidopsis thalian	0.824	0.835	0.689	1.1e-142
UNIPROTKB|Q5I6E9	700	Adi3 "AvrPto-dependent Pto-int	0.818	0.534	0.538	3.6e-105
TAIR|locus:2160922	586	D6PKL2 "D6 protein kinase like	0.768	0.598	0.574	1.2e-104
TAIR|locus:2174885	499	AT5G40030 [Arabidopsis thalian	0.851	0.779	0.522	2.3e-103
TAIR|locus:2133837	506	D6PKL1 "D6 protein kinase like	0.809	0.731	0.534	9.8e-103
TAIR|locus:2178388	498	D6PK "D6 protein kinase" [Arab	0.824	0.757	0.527	2e-102
TAIR|locus:2207470	555	AGC1.7 "AGC kinase 1.7" [Arabi	0.824	0.679	0.531	2.6e-102
TAIR|locus:2087785	577	AGC1.5 "AGC kinase 1.5" [Arabi	0.803	0.636	0.542	2.6e-102
TAIR|locus:2055017	765	AT2G44830 [Arabidopsis thalian	0.803	0.479	0.531	5.4e-102
TAIR|locus:2091443	578	ATPK7 [Arabidopsis thaliana (t	0.822	0.650	0.515	3.1e-99

TAIR|locus:2098120 AT3G44610 [Arabidopsis thaliana (taxid:3702)]

 Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
 Identities = 269/390 (68%), Positives = 317/390 (81%)

Query:    79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC------FFAAKVMDKRELVSRNKESR 132
             L+LSDLRF  RLGSGDIGSV+L + KS ++            AAKVMDK+EL SR+KE R
Sbjct:    64 LSLSDLRFRLRLGSGDIGSVFLAEFKSLTAVTETTAVKLPLLAAKVMDKKELASRSKEGR 123

Query:   133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
             A+ EREILE LDHPFLPTLYA +D P+W CLLTEFCPGGDLHVLRQ+Q  KRFHESAVRF
Sbjct:   124 AKTEREILESLDHPFLPTLYAAIDSPKWLCLLTEFCPGGDLHVLRQKQTHKRFHESAVRF 183

Query:   193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQS 252
             Y SEV+VA+E+LHM+GI+YRDLKPENVLVRSDGHIMLTDFDLSLK D STST Q+V +++
Sbjct:   184 YVSEVIVAIEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDESTSTPQIVLNRN 243

Query:   253 P-PTG--DQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK-RRRKKKLGNPGT-PEIV 307
               P G  DQ  N   +D     +SSC+IPNCIVPAVSC HP+ RRRKKK  +    PE+V
Sbjct:   244 NLPNGSSDQNENQ-GMDHRQTTSSSCMIPNCIVPAVSCFHPRIRRRKKKTDHRNNGPELV 302

Query:   308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
             AEP+DVRSMSFVGTHEYLAPEI+SGEGHG+AVDWWTLGIF+FELFYGTTPFKG+DHELTL
Sbjct:   303 AEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFMFELFYGTTPFKGMDHELTL 362

Query:   368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR 427
             AN+VARALEFPKEP++P  AKDLI+QLL KDP+RR+GS +GATA+KRH FF GVNWALL 
Sbjct:   363 ANIVARALEFPKEPTIPSAAKDLISQLLAKDPSRRLGSSLGATAVKRHPFFQGVNWALLM 422

Query:   428 CAKPPFIPRPVTCRDLTTTNSSIDNSIEYY 457
             C +PPF+P P   ++L + +   +  ++YY
Sbjct:   423 CTRPPFLPPPFR-KELLSDDICPETHVDYY 451

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q5I6E9 Adi3 "AvrPto-dependent Pto-interacting protein 3" [Solanum lycopersicum (taxid:4081)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 211/392 (53%), Positives = 261/392 (66%)

Query:    52 PRCNDDPCWKAIKEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
             P   +DP WKAI    +          L +S  + + RLG GDIGSVYL +L    S   
Sbjct:   282 PHKGNDPRWKAILAIRARDGI------LGMSHFKLLKRLGCGDIGSVYLSEL----SGTR 331

Query:   112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
             C+FA KVMDK  L SR K +RA+ EREIL++LDHPFLPTLY   +  R+SCL+ E+CPGG
Sbjct:   332 CYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGG 391

Query:   172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
             DLH LRQRQP K F E A RFYA+EV++ALE+LHM+G++YRDLKPENVLVR DGHIML+D
Sbjct:   392 DLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSD 451

Query:   232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
             FDLSL+   S +  ++ SD     G       A  +P    + C+ P C +P +     K
Sbjct:   452 FDLSLRCAVSPTLIRISSDDPSKRGAAFCVQPACIEP---TTVCMQPACFLPRLFPQKSK 508

Query:   292 RRRKKKLGNPG-----TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
             ++  K   + G      PE+VAEP   RSMSFVGTHEYLAPEII GEGHG+AVDWWT GI
Sbjct:   509 KKTPKPRADSGFQANSMPELVAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGI 568

Query:   347 FIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
             F+ EL YG TPFKG  +  TL NVV + L+FP  P+    ++DLI  LLVK+P  R+G K
Sbjct:   569 FLHELLYGKTPFKGSGNRATLFNVVGQQLKFPDSPATSYASRDLIRGLLVKEPQNRLGVK 628

Query:   407 MGATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
              GAT IK+H FF GVNWAL+RC+ PP +PRPV
Sbjct:   629 RGATEIKQHPFFEGVNWALIRCSTPPEVPRPV 660

GO:0005515 "protein binding" evidence=IPI

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

TAIR|locus:2160922 D6PKL2 "D6 protein kinase like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 213/371 (57%), Positives = 256/371 (69%)

Query:    79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
             L LS  R + RLG GDIGSVYL +L    S   C+FA KVMDK  L SR K  RA+ ERE
Sbjct:   186 LGLSHFRLLKRLGCGDIGSVYLSEL----SGTKCYFAMKVMDKTSLASRKKLLRAQTERE 241

Query:   139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             IL+ LDHPFLPTLY   +  ++SCL+ EFCPGGDLH LRQRQP K F E AV+FY +E +
Sbjct:   242 ILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYIAESL 301

Query:   199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
             +ALE+LHM+GI+YRDLKPENVLVR DGHIML+DFDLSL+   S +  +  + +S P    
Sbjct:   302 LALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCLVSPTLVKSAAIESDPL--- 358

Query:   259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP-------KRRRKKKLGNPGT----PEIV 307
             + N   V QP     SCI P+C VP  +C  P       K+ RK K          PE+V
Sbjct:   359 RKNVYCV-QPACIEPSCIQPSCTVPT-TCFSPRLFSSKSKKDRKPKNDTANQVRPLPELV 416

Query:   308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
             AEP D RSMSFVGTHEYLAPEII GEGHG+AVDWWT GIF++EL +G TPFKG  +  TL
Sbjct:   417 AEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSGNRQTL 476

Query:   368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR 427
              NVV + L FP+ P V   A+DLI  LL+K+P +R+G K GAT +K+H FF GVNWAL+R
Sbjct:   477 FNVVGQPLRFPETPVVSFAARDLIRGLLMKEPQQRLGFKRGATEVKQHPFFEGVNWALIR 536

Query:   428 CAKPPFIPRPV 438
             CA PP IP+PV
Sbjct:   537 CATPPEIPKPV 547

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2174885 AT5G40030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 212/406 (52%), Positives = 267/406 (65%)

Query:    52 PRCNDDPCWKAIKEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
             P   +D  W AI+              L L   R + +LG GDIGSVYL +L+      G
Sbjct:    87 PHKGNDLRWDAIQNVKCS-----KNEDLGLGHFRLLKKLGCGDIGSVYLAELREM----G 137

Query:   112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
             CFFA KVMDK  L+ R K  RA+ EREIL +LDHPFLPTLY+  +  ++SCLL EFC GG
Sbjct:   138 CFFAMKVMDKGMLIGRKKLVRAQTEREILGLLDHPFLPTLYSHFETEKFSCLLMEFCSGG 197

Query:   172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
             DLH+LRQ+QP K F E A RFYASEV++ALE+LHMMG++YRDLKPENV+VR DGHIML+D
Sbjct:   198 DLHILRQKQPGKHFSELAARFYASEVLLALEYLHMMGVVYRDLKPENVMVREDGHIMLSD 257

Query:   232 FDLSLKGDNSTSTAQLVSDQSPPTGDQ--QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH 289
             FDLSL+   S +  Q  S  S        QP  C +D       +CI P+C  P      
Sbjct:   258 FDLSLQSFVSPTLIQSTSQPSCHIASYCIQP-PC-IDPSCKLPVACIQPSCFKPRFLNNK 315

Query:   290 PKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIF 349
             P++ + +K G+   P ++AEP   RSMSFVGTHEYLAPEII G+GHG++VDWWT GIF++
Sbjct:   316 PRKAKTEKAGSDSLPMLIAEPTAARSMSFVGTHEYLAPEIIRGDGHGSSVDWWTFGIFLY 375

Query:   350 ELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA 409
             EL  G TPFKG  +  TL NVV + L+FP E S+   AKDLI  LL KDP +R+G K GA
Sbjct:   376 ELLTGKTPFKGNGNRETLFNVVGQPLKFP-EGSISFAAKDLIRGLLTKDPKKRLGFKKGA 434

Query:   410 TAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDNSIE 455
             T IK+H FFN VNWAL+R   PP IP+P+   DL+  N ++ +S++
Sbjct:   435 TEIKQHPFFNNVNWALIRSTTPPEIPKPI---DLSILNETLKSSVQ 477

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2133837 D6PKL1 "D6 protein kinase like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 216/404 (53%), Positives = 267/404 (66%)

Query:    48 HHAPPRCNDDPCWKAIKEA-TSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSK 106
             ++ P + ND   W+AI+   T  G        L L+  R + RLG GDIG+V+L +L   
Sbjct:    94 NNKPHKANDVR-WEAIQAVRTKHGV-------LGLNHFRLLKRLGCGDIGTVHLAELHGT 145

Query:   107 SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTE 166
                  CFFA KVMDK  L SR K  RA+ EREIL+ LDHPFLPTLY+  +  ++SCL+ E
Sbjct:   146 R----CFFAMKVMDKGALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVME 201

Query:   167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH 226
             FCPGGDLH LRQRQP KRF E A +FY +EV++A+E+LHM+GIIYRDLKPENVLVR DGH
Sbjct:   202 FCPGGDLHTLRQRQPGKRFSEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGH 261

Query:   227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPAV 285
             +ML+DFDLSL+   S +  +  S      G +    CA  QP     +CI  P+CI    
Sbjct:   262 VMLSDFDLSLRCTVSPTVVR--STVLASEGQKNSGYCA--QP-----ACIQQPSCISAPT 312

Query:   286 SCLHP-----KRRRKKKLGNP-GT-----PEIVAEPLDVRSMSFVGTHEYLAPEIISGEG 334
             +C  P     K ++ KK+ N  G      PE+VAEP   RSMSFVGTHEYLAPEII GEG
Sbjct:   313 TCFSPRYFSSKSKKDKKMKNETGNQVSPLPELVAEPTSARSMSFVGTHEYLAPEIIKGEG 372

Query:   335 HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL 394
             HG+AVDWWT GIF++EL +G TPFKG  +  TL NVV + L FP+ P V   A+DLI  L
Sbjct:   373 HGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRSL 432

Query:   395 LVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
             LVK+P  R+  K GAT +K+H FF GVNWAL+RCA PP IP+PV
Sbjct:   433 LVKEPQHRLAYKRGATEMKQHPFFEGVNWALVRCASPPEIPKPV 476

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2178388 D6PK "D6 protein kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 217/411 (52%), Positives = 267/411 (64%)

Query:    51 PPRCNDDPCWKAIKEA-TSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSN 109
             P + ND   W+AI+   T  G        L L+  R + RLG GDIG+V+L +L    + 
Sbjct:    83 PHKANDVR-WEAIQAVRTKHGG-------LGLNHFRLLKRLGCGDIGTVHLAEL----NG 130

Query:   110 NGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP 169
               C+FA KVMDK  L SR K  RA+ EREIL+ LDHPFLPTLY+  +  ++SCL+ EFCP
Sbjct:   131 TRCYFAMKVMDKTALASRKKLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCP 190

Query:   170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
             GGDLH LRQRQP KRF E A +FY +EV++A+E+LHM+GIIYRDLKPENVLVR DGH+ML
Sbjct:   191 GGDLHTLRQRQPGKRFTEQAAKFYVAEVLLAMEYLHMLGIIYRDLKPENVLVRDDGHVML 250

Query:   230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPA-VSC 287
             +DFDLSL+    T +  +V   +  +     N  +  Q P    +CI  P+CI  A  SC
Sbjct:   251 SDFDLSLR---CTVSLSIVRSANVGSEGLSKNSVSCSQQP----ACIQQPSCISMAPTSC 303

Query:   288 LHPK--RRRKKKLGNPGT----------PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGH 335
               P+    + KK   P T          PE+VAEP   RSMSFVGTHEYLAPEII GEGH
Sbjct:   304 FGPRFFSSKSKKDKKPKTENGNHQVTPLPELVAEPTGARSMSFVGTHEYLAPEIIKGEGH 363

Query:   336 GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL 395
             G+AVDWWT GIF++EL +G TPFKG  +  TL NVV + L FP+ P V   A+DLI  LL
Sbjct:   364 GSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRSLL 423

Query:   396 VKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTT 446
             VK+P  R+  K GAT IK+H FF GVNWAL+RCA PP IP+PV    L  T
Sbjct:   424 VKEPQHRLAYKRGATEIKQHPFFEGVNWALVRCASPPEIPKPVDLEALNPT 474

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0010540 "basipetal auxin transport" evidence=IGI

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2207470 AGC1.7 "AGC kinase 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 208/391 (53%), Positives = 258/391 (65%)

Query:    52 PRCNDDPCWKAIKEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
             P    D  W A+   TS+G        L +SD R + RLG GDIGSVYLV+L+   +   
Sbjct:   120 PHTGGDIRWDAVNTLTSKGVQ------LGISDFRLLKRLGYGDIGSVYLVELRGTIT--- 170

Query:   112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
              +FA KVMDK  L SRNK  RA+ EREIL  LDHPFLPTLY+  +  ++ CL+ EFC GG
Sbjct:   171 -YFAMKVMDKASLASRNKLLRAQTEREILSQLDHPFLPTLYSHFETDKFYCLVMEFCGGG 229

Query:   172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
             +L+ LRQ+QP+K F E A RF+ASEV++ALE+LHM+GI+YRDLKPENVLVR DGHIML+D
Sbjct:   230 NLYSLRQKQPNKCFTEDAARFFASEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSD 289

Query:   232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
             FDLSL+   S +  +  S  +   G        +         CI P+   P +     K
Sbjct:   290 FDLSLRCSVSPTLVKSSSVHAAGGGSGSSRPVGLIDEDAAVQGCIQPSTFFPRILQSSKK 349

Query:   292 RRRKKK-LG---NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIF 347
              R+ K   G   N   PE++AEP +V+SMSFVGTHEYLAPEII GEGHG+AVDWWT GIF
Sbjct:   350 NRKAKSDFGLFVNGSMPELMAEPTNVKSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIF 409

Query:   348 IFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM 407
             I+EL YG TPFKG  +  TL NV+ +AL FP+ P V   A+DLI  LLVK+P +R+  K 
Sbjct:   410 IYELLYGATPFKGQGNRATLHNVIGQALRFPEVPHVSSAARDLIKGLLVKEPQKRIAYKR 469

Query:   408 GATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
             GAT IK+H FF GVNWAL+R A PP +P PV
Sbjct:   470 GATEIKQHPFFEGVNWALIRSATPPHVPEPV 500

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2087785 AGC1.5 "AGC kinase 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 212/391 (54%), Positives = 260/391 (66%)

Query:    52 PRCNDDPCWKAIKEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG 111
             P    D  W AI    S+G        + L + R + RLG GDIGSVYL  L+  ++   
Sbjct:   159 PHTGGDVRWDAINSIASKGPQ------IGLDNFRLLKRLGYGDIGSVYLADLRGTNA--- 209

Query:   112 CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGG 171
               FA KVMDK  L SRNK  RA+ EREIL +LDHPFLPTLY+  +  ++ CL+ EFC GG
Sbjct:   210 -VFAMKVMDKASLASRNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGG 268

Query:   172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
             +LH LRQ+QP +RF E A RFYASEV++ALE+LHM+G++YRDLKPEN+LVR +GHIML+D
Sbjct:   269 NLHSLRQKQPSRRFTEEAARFYASEVLLALEYLHMLGVVYRDLKPENILVRDEGHIMLSD 328

Query:   232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
             FDLSL+    T    LV   S  +G       A+    F  + C+ P+  +P +  L  K
Sbjct:   329 FDLSLR---CTFNPTLVKSSSVCSGGG-----AILNEEFAVNGCMHPSAFLPRL--LPSK 378

Query:   292 RRRKKK----LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIF 347
             + RK K    LG    PE++AEP DVRSMSFVGTHEYLAPEII GEGHG+AVDWWT GIF
Sbjct:   379 KTRKAKSDSGLGGLSMPELMAEPTDVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIF 438

Query:   348 IFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM 407
             ++EL +GTTPFKG  +  TL NVV + L+FP  P V   A+DLI  LLVKDP RR+    
Sbjct:   439 LYELLHGTTPFKGQGNRATLHNVVGQPLKFPDTPHVSSAARDLIRGLLVKDPHRRIAYTR 498

Query:   408 GATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
             GAT IK+H FF GVNWAL+R A PP IP PV
Sbjct:   499 GATEIKQHPFFEGVNWALVRSAAPPHIPDPV 529

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI;RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2055017 AT2G44830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 211/397 (53%), Positives = 264/397 (66%)

Query:    52 PRCNDDPCWKAIKEA-TSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNN 110
             P   +DP W AI    T +G        L +S  + + RLG GDIGSVYL +L    S  
Sbjct:   337 PHKGNDPWWNAILAIRTRDGI-------LGMSHFKLLKRLGCGDIGSVYLAEL----SGT 385

Query:   111 GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPG 170
              C FA KVMDK  L  R K +RA+ ER+IL++LDHPFLPTLY   +  R+SCL+ E+CPG
Sbjct:   386 RCHFAVKVMDKASLEDRKKLNRAQTERDILQLLDHPFLPTLYTHFETDRFSCLVMEYCPG 445

Query:   171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT 230
             GDLH LRQRQP K F E A RFYA+EV++ALE+LHM+G++YRDLKPENVLVR DGHIML+
Sbjct:   446 GDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLS 505

Query:   231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPAVSCLH 289
             DFDLSL+   + S   + +  S P+  ++   C         S+CII P+C +P    + 
Sbjct:   506 DFDLSLRC--AVSPTLIKTFDSDPS--RRGAFCVQPACMEPTSACIIQPSCFLPR--SIF 559

Query:   290 PKRRRKKKL---------GNPGT-PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAV 339
             P + +K K           + G+ PE+VAEP + RSMSFVGTHEYLAPEII GEGHG+AV
Sbjct:   560 PNKNKKNKSRKTQADFFKSHSGSLPELVAEP-NTRSMSFVGTHEYLAPEIIKGEGHGSAV 618

Query:   340 DWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP 399
             DWWT GIF+ EL YG TPFKG  +  TL NVV   L+FP+ P+     +DLI  LLVKDP
Sbjct:   619 DWWTFGIFVHELLYGKTPFKGSGNRATLFNVVGEQLKFPESPATSYAGRDLIQALLVKDP 678

Query:   400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR 436
               R+G+K GAT IK+H FF GVNWAL+RC+ PP +PR
Sbjct:   679 KNRLGTKRGATEIKQHPFFEGVNWALIRCSTPPEVPR 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2091443 ATPK7 [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 210/407 (51%), Positives = 263/407 (64%)

Query:    49 HAPPRCNDDPCWKAIKEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS 108
             + P R N+D  W AI+E  S          L   D + + +LG GDIG+VYL +L     
Sbjct:   152 YKPHRDNNDKRWVAIQEVRSR-----VGSSLEAKDFKLIKKLGGGDIGNVYLAEL----I 202

Query:   109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
               G  FA KVM+K  + +R K  RA+ E+EIL+ LDHPFLPTLY+  +    SCL+ EFC
Sbjct:   203 GTGVSFAVKVMEKAAIAARKKLVRAQTEKEILQSLDHPFLPTLYSHFETEMNSCLVMEFC 262

Query:   169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
             PGGDLH LRQ+Q  K F E A RFY +EV++A+E+LHM+GIIYRDLKPENVLVR DGHIM
Sbjct:   263 PGGDLHSLRQKQRGKYFPEQAARFYVAEVLLAMEYLHMLGIIYRDLKPENVLVREDGHIM 322

Query:   229 LTDFDLSLKGDNSTST---AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII-PNCIVPA 284
             L+DFDLSL+   S +    A +  +    +   QP  C VDQ     SSCI+ P+CI P 
Sbjct:   323 LSDFDLSLRCAVSPTLVRFAAITLESKSSSYCIQPT-C-VDQ-----SSCIVQPDCIQPV 375

Query:   285 VSCLHP----KRRRKKKLGNPGT-----PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGH 335
               C  P    K + +KK  +        PE++AEP   RSMSFVGTHEYLAPEII GEGH
Sbjct:   376 --CFTPRFLSKGKHRKKSNDMSRQIRPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGH 433

Query:   336 GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL 395
             G+AVDWWT GIF++EL +G TPF+G D+  TL NVV + L FP+ P+V   A+DLI  LL
Sbjct:   434 GSAVDWWTFGIFLYELLFGITPFRGGDNRATLFNVVGQPLRFPEHPNVSFAARDLIRGLL 493

Query:   396 VKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD 442
             VK+P  R+  + GAT IK+H FF  VNWAL+RC  PP IP+PV   D
Sbjct:   494 VKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCTSPPQIPQPVKPMD 540

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-162
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-89
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-78
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-73
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-70
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	2e-57
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	4e-54
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-53
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-47
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	9e-45
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	4e-44
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-44
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-43
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	6e-43
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	2e-40
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	8e-40
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	7e-38
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-37
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-36
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	3e-36
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-36
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	7e-36
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-34
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-32
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-32
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	3e-31
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-31
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	8e-31
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-30
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	2e-30
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	3e-30
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	7e-30
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	2e-29
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	6e-29
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	7e-29
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	7e-29
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-29
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-28
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-28
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-28
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-28
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	5e-28
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-28
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	1e-27
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-27
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	3e-27
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	7e-27
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-26
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-26
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	6e-26
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-26
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	8e-26
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-25
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	1e-25
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-25
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-25
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	2e-25
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-25
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-25
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	4e-25
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	6e-25
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	7e-25
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	8e-25
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	1e-24
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	1e-24
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	3e-24
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	3e-24
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-24
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	3e-24
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	4e-24
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	6e-24
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-23
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-23
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	2e-23
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	3e-23
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-23
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	5e-23
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	1e-22
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	1e-22
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-22
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-22
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-22
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-22
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	5e-22
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	6e-22
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	8e-22
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	1e-21
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-21
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-21
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	3e-21
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	3e-21
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	5e-21
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	7e-21
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	9e-21
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	1e-20
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	1e-20
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-20
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	3e-20
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	4e-20
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-20
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	5e-20
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	9e-20
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-19
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	2e-19
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	2e-19
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	2e-19
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	3e-19
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	4e-19
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	4e-19
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	4e-19
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	5e-19
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	9e-19
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	1e-18
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-18
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-18
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-18
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	5e-18
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	9e-18
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	1e-17
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-17
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-17
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-17
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-17
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-17
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	3e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-17
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	9e-17
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-16
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	2e-16
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	3e-16
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	6e-16
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-15
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	7e-15
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	8e-15
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	9e-15
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-14
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-14
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-14
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-14
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	7e-14
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-13
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-13
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-13
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	5e-13
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	5e-13
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	7e-13
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-13
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-12
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	1e-12
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-12
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-12
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	5e-12
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	2e-11
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-11
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-11
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-11
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-11
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-11
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-11
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	6e-11
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-10
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-10
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	4e-10
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	5e-10
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	5e-10
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	7e-10
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	8e-10
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	8e-10
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	9e-10
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-09
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-09
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-09
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-09
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-09
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	4e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	4e-09
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	4e-09
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	4e-09
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	7e-09
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-08
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-08
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-08
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-08
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	2e-08
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-08
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	2e-08
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-08
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-08
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	5e-08
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	6e-08
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	6e-08
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	7e-08
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	8e-08
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-07
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-07
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-07
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	2e-07
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-07
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	2e-07
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-07
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-07
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-07
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	4e-07
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	4e-07
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	4e-07
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-07
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	5e-07
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	5e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	6e-07
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	8e-07
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	8e-07
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	8e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	9e-07
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	9e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-06
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	1e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-06
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-06
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-06
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	3e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-06
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-06
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	3e-06
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	3e-06
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	3e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-06
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	4e-06
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	4e-06
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	5e-06
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	5e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	6e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	6e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	7e-06
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	7e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	8e-06
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	9e-06
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	9e-06
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	1e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-05
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	1e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-05
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-05
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-05
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	3e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	3e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-05
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-05
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	4e-05
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	4e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	5e-05
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	5e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	6e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	6e-05
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	7e-05
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	7e-05
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	7e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	8e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	9e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-04
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-04
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-04
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	3e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	3e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-04
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	3e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	3e-04
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	3e-04
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-04
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	3e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	3e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	4e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	4e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	5e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	5e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	5e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	6e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	6e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	6e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	7e-04
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	9e-04
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	0.001
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	0.001
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.001
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.001
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	0.001
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.001
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.001
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	0.001
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	0.001
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.001
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.001
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.002
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.002
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.002
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.002
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	0.002
PRK09188	365	PRK09188, PRK09188, serine/threonine protein kinas	0.002
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	0.002
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	0.002
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.002
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	0.002
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.002
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.002
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.002
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	0.003
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	0.003
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.003
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.003
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.003
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.003
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.003
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.004
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.004
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.004
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.004
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.004
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.004
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.004

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score =  459 bits (1184), Expect = e-162
 Identities = 167/356 (46%), Positives = 215/356 (60%), Gaps = 45/356 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
              + +  LG GD+G V+LV+LK         FA KV+DK+E++ RNK  R   E+EIL 
Sbjct: 1   KHFKKIKLLGKGDVGRVFLVRLKGTGK----LFALKVLDKKEMIKRNKVKRVLTEQEILA 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            LDHPFLPTLYA+     + CL+ ++CPGG+L  L QRQP K   E   RFYA+EV++AL
Sbjct: 57  TLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLAL 116

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
           E+LH++GI+YRDLKPEN+L+   GHIML+DFDLS     S      VS            
Sbjct: 117 EYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSK---QSDVEPPPVSKA---------- 163

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                                     L    RR     N    E  +E    RS SFVGT
Sbjct: 164 --------------------------LRKGSRRSSV--NSIPSETFSEEPSFRSNSFVGT 195

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
            EY+APE+ISG+GHG+AVDWWTLGI ++E+ YGTTPFKG + + T +N++ + + FP  P
Sbjct: 196 EEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSP 255

Query: 382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
            V   A+DLI +LLVKDP++R+GSK GA  IK+H FF GVNWAL+R   PP IPRP
Sbjct: 256 PVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRP 311

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  270 bits (694), Expect = 6e-89
 Identities = 114/329 (34%), Positives = 161/329 (48%), Gaps = 79/329 (24%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV+ K    + G  +A KV+ K++++ R +      ER IL  ++HPF+ 
Sbjct: 1   LGKGSFGKVLLVRKK----DTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L+          L+ E+ PGG+L     ++   RF E   RFYA+E+V+ALE+LH +GI
Sbjct: 57  KLHYAFQTEEKLYLVLEYAPGGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSLGI 114

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           IYRDLKPEN+L+ +DGHI LTDF L+ +  +  S                          
Sbjct: 115 IYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRT------------------------ 150

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
             N+ C                          GTPE                  YLAPE+
Sbjct: 151 --NTFC--------------------------GTPE------------------YLAPEV 164

Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
           + G+G+G AVDWW+LG+ ++E+  G  PF   D +     ++   L FP+  S    A+D
Sbjct: 165 LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSP--EARD 222

Query: 390 LIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           LI+ LL KDPT+R+GS  GA  IK H FF
Sbjct: 223 LISGLLQKDPTKRLGSG-GAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  245 bits (628), Expect = 1e-78
 Identities = 108/341 (31%), Positives = 160/341 (46%), Gaps = 65/341 (19%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D +F   +G G   +V L + K         +A K++DKR+L+   K    +IE+E+L 
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKE----TNKEYAIKILDKRQLIKEKKVKYVKIEKEVLT 56

Query: 142 MLD-HPFLPTLYATLDCPRWSCL--LTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEV 197
            L+ HP +  LY T        L  + E+ P G+L   +R+        E   RFYA+E+
Sbjct: 57  RLNGHPGIIKLYYTFQDE--ENLYFVLEYAPNGELLQYIRKY---GSLDEKCTRFYAAEI 111

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
           ++ALE+LH  GII+RDLKPEN+L+  D HI +TDF           TA+++   S P  +
Sbjct: 112 LLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFG----------TAKVLDPNSSPESN 161

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
           +                           S +   RRR                      S
Sbjct: 162 KG--------------------DATNIDSQIEKNRRRFA--------------------S 181

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           FVGT EY++PE+++ +  G + D W LG  I+++  G  PF+G +  LT   ++     F
Sbjct: 182 FVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSF 241

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           P  P+ P  AKDLI +LLV DP  R+G   G   +K H FF
Sbjct: 242 P--PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  232 bits (593), Expect = 1e-73
 Identities = 106/335 (31%), Positives = 159/335 (47%), Gaps = 71/335 (21%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +  G  G V+L + KS     G  +A KV+ K +++ +N+  +   ER+IL     P++ 
Sbjct: 1   ISKGAYGRVFLAKKKS----TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            LY +    +   L+ E+ PGGDL  +L          E   R Y +E+V+ALE+LH  G
Sbjct: 57  KLYYSFQGKKNLYLVMEYLPGGDLASLLENVG---SLDEDVARIYIAEIVLALEYLHSNG 113

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQP 268
           II+RDLKP+N+L+ S+GH+ LTDF LS  G        LV  Q             ++  
Sbjct: 114 IIHRDLKPDNILIDSNGHLKLTDFGLSKVG--------LVRRQ-----------INLNDD 154

Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
              +   +                         GTP                  +Y+APE
Sbjct: 155 EKEDKRIV-------------------------GTP------------------DYIAPE 171

Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
           +I G+GH   VDWW+LG  ++E   G  PF G   E    N++   +E+P++  V   A 
Sbjct: 172 VILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAI 231

Query: 389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
           DLI++LLV DP +R+G+K     IK H FF G++W
Sbjct: 232 DLISKLLVPDPEKRLGAK-SIEEIKNHPFFKGIDW 265

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  226 bits (578), Expect = 3e-70
 Identities = 116/356 (32%), Positives = 172/356 (48%), Gaps = 53/356 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D   +  +G G  G V+LV+ K      G  +A KV+ K +++ RN+ +  R ER+IL 
Sbjct: 1   DDFEVIKVIGRGAFGEVWLVRDKDT----GQVYAMKVLRKSDMIKRNQIAHVRAERDILA 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             D P++  LY +        L+ E+ PGGDL  L  R+    F E   RFY +E+V+AL
Sbjct: 57  DADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLAL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
           + +H +G I+RD+KP+N+L+ +DGHI L DF L  K  N     +   + S         
Sbjct: 115 DSVHKLGFIHRDIKPDNILIDADGHIKLADFGLC-KKMNKAKDREYYLNDS-----HNLL 168

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                                         ++R+                 VR+ S VGT
Sbjct: 169 FRDNVLVRR------------------RDHKQRR-----------------VRANSTVGT 193

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPK 379
            +Y+APE++ G  +G   DWW+LG+ ++E+ YG  PF     + T   ++    +L FP 
Sbjct: 194 PDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPP 253

Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
           +P V   A DLI +LL  DP  R+GS      IK H FF G++W  LR  KPPF+P
Sbjct: 254 DPPVSPEAIDLICRLLC-DPEDRLGS---FEEIKSHPFFKGIDWENLRETKPPFVP 305

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  193 bits (493), Expect = 2e-57
 Identities = 112/359 (31%), Positives = 178/359 (49%), Gaps = 39/359 (10%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   V  +G G  G V LVQ K    + G  +A K + K E+  +++ +  + ER++L  
Sbjct: 2   DFHTVKVIGKGAFGEVRLVQKK----DTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAE 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D P++ +LY +    ++  L+ EF PGGDL  +  +     F E   RFY +E V+A+E
Sbjct: 58  SDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIE 115

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL---KGDNSTSTAQLVSDQSPPTGDQQ 259
            +H +G I+RD+KP+N+L+   GHI L+DF LS    K  +S    +L+  +S       
Sbjct: 116 AVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDN 175

Query: 260 PNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV 319
            N  AVD            N  + +   +   ++ ++ +                + S V
Sbjct: 176 RNSVAVDS----------INLTMSSKDQIATWKKNRRLM----------------AYSTV 209

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEF 377
           GT +Y+APEI   +G+G   DWW+LG  +FE   G  PF   +   T   ++     L F
Sbjct: 210 GTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYF 269

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR 436
           P +  +   A+DLI +L+  +   R+G + GA  IK H FF GV+W  +R  + PFIP+
Sbjct: 270 PDDIHLSVEAEDLIRRLIT-NAENRLG-RGGAHEIKSHPFFRGVDWDTIRQIRAPFIPQ 326

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score =  184 bits (469), Expect = 4e-54
 Identities = 108/350 (30%), Positives = 170/350 (48%), Gaps = 46/350 (13%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G V LVQ K    + G  +A K + K E++ + + +  R ER+IL   D+P++ 
Sbjct: 9   IGRGAFGEVRLVQKK----DTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVV 64

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            LY +     +  L+ E+ PGGD+  L  ++    F E   RFY +E ++A++ +H +G 
Sbjct: 65  KLYYSFQDENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKLGY 122

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
           I+RD+KP+N+L+ + GHI L+DF L   LK  + T   +++S   P       N      
Sbjct: 123 IHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALP------SNFLDFIS 176

Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
            P  +S                 KR R+                   + S VGT +Y+AP
Sbjct: 177 KPM-SSKRKAETW----------KRNRRAL-----------------AYSTVGTPDYIAP 208

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFPKEPSVPG 385
           E+    G+    DWW+LG+ ++E+  G  PF   + + T   ++     L+FP E  +  
Sbjct: 209 EVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSP 268

Query: 386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
            AKDLI +L   +  RR+G+  G   IK H FF GV+W  +R    P IP
Sbjct: 269 EAKDLIKRLCC-EAERRLGNN-GVNEIKSHPFFKGVDWEHIRERPAPIIP 316

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  180 bits (458), Expect = 1e-53
 Identities = 93/342 (27%), Positives = 138/342 (40%), Gaps = 89/342 (26%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
              + +LGSG  G+VY  + K      G   A K++ KR   S+  ++  R E  IL  L
Sbjct: 1   YELLRKLGSGSFGTVYKAKHK----GTGKIVAVKILKKRSEKSKKDQTARR-EIRILRRL 55

Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALE 202
            HP +  L    +      L+ E+C GGDL   L +        E   +  A +++  LE
Sbjct: 56  SHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRG---GPLSEDEAKKIALQILRGLE 112

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           +LH  GII+RDLKPEN        I+L                           D+    
Sbjct: 113 YLHSNGIIHRDLKPEN--------ILL---------------------------DENGVV 137

Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
              D   FG +  ++ +                                     +FVGT 
Sbjct: 138 KIAD---FGLAKKLLKS--------------------------------SSSLTTFVGTP 162

Query: 323 EYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKG---IDHELTLANVVARALEFP 378
            Y+APE++  G G+G  VD W+LG+ ++EL  G  PF G   +D    +  ++   LEF 
Sbjct: 163 WYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFD 222

Query: 379 KEPSVPGP--AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           +     G   AKDLI + L KDP++R      A  I +H +F
Sbjct: 223 EPKWSSGSEEAKDLIKKCLNKDPSKR----PTAEEILQHPWF 260

Length = 260

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  164 bits (418), Expect = 2e-47
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 8/164 (4%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D  F+  LG+G  G V LV+ K     +G ++A K++ K ++V   +      E+ IL+
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHK----GSGKYYALKILSKAKIVKLKQVEHVLNEKRILQ 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
            + HPFL  LY +        L+ E+ PGG+L   LR+     RF E   RFYA++VV+A
Sbjct: 57  SIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSG---RFPEPVARFYAAQVVLA 113

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           LE+LH + I+YRDLKPEN+L+ SDG+I +TDF  + +    T T
Sbjct: 114 LEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYT 157

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  156 bits (397), Expect = 9e-45
 Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             + +LG G  G VYL + K      G   A KV+ K+++  +    R   E +IL+ L 
Sbjct: 2   EILEKLGEGSFGKVYLARDK----KTGKLVAIKVIKKKKI--KKDRERILREIKILKKLK 55

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  LY   +      L+ E+C GGDL  L +++   R  E   RFY  +++ ALE+L
Sbjct: 56  HPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKR--GRLSEDEARFYLRQILSALEYL 113

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
           H  GI++RDLKPEN+L+  DGH+ L DF L+ + D        V
Sbjct: 114 HSKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFV 157

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score =  158 bits (401), Expect = 4e-44
 Identities = 107/351 (30%), Positives = 163/351 (46%), Gaps = 40/351 (11%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G V LV    K   N   +A K + K +++ RN+ +  + ER+IL   D+ ++ 
Sbjct: 9   IGIGAFGEVCLV---RKVDTNA-LYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVV 64

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            LY +         + ++ PGGD+  L  R     F E   RFY +E+  A+E +H MG 
Sbjct: 65  KLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKMGF 122

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA-VDQP 268
           I+RD+KP+N+L+  DGHI LTDF L   G   T  ++            Q  D    D  
Sbjct: 123 IHRDIKPDNILIDRDGHIKLTDFGLC-TGFRWTHDSKYY----------QKGDHHRQDSM 171

Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
                   I  C +  +     +RRRK++                 + S VGT  Y+APE
Sbjct: 172 EPSEEWSEIDRCRLKPL-----ERRRKRQ------------HQRCLAHSLVGTPNYIAPE 214

Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGP 386
           ++   G+    DWW++G+ ++E+  G  PF       T   V+     L  P +  +   
Sbjct: 215 VLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSRE 274

Query: 387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA-LLRCAKPPFIPR 436
           A DLI + L      R+G   GA  IK H FF G+++A L+R  K P+IP+
Sbjct: 275 ASDLILR-LCCGAEDRLGKN-GADEIKAHPFFKGIDFASLIRRQKAPYIPK 323

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score =  154 bits (392), Expect = 6e-44
 Identities = 95/355 (26%), Positives = 145/355 (40%), Gaps = 88/355 (24%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V   Q+K      G  +A K +DK+ L  R  E  A  E++ILE +   F+ 
Sbjct: 1   LGKGGFGEVCACQVK----ATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
           +L    +     CL+     GGDL        +  F E+   FYA++++  LE LH   I
Sbjct: 57  SLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRI 116

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           +YRDLKPENVL+   G++ ++D  L+++          +       G             
Sbjct: 117 VYRDLKPENVLLDDHGNVRISDLGLAVE----------LKGGKKIKG------------- 153

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG--TPEIVAEPLDVRSMSFVGTHEYLAP 327
                                      + G PG   PE++                    
Sbjct: 154 ---------------------------RAGTPGYMAPEVL-------------------- 166

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVARALEFPKEPSV 383
               GE +  +VDW+ LG  ++E+  G +PF+     ++ E      +  A+E+P + S 
Sbjct: 167 ---QGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFS- 222

Query: 384 PGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPFIP 435
              AKDL   LL KDP +R+G +   A  ++ H  F  +NW  L      PPFIP
Sbjct: 223 -PEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRLEAGMLEPPFIP 276

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score =  155 bits (393), Expect = 2e-43
 Identities = 107/362 (29%), Positives = 165/362 (45%), Gaps = 89/362 (24%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D      +G G  G V +V+ K+     G  +A KVM K  L+++   S    ER+IL +
Sbjct: 2   DFDVKSLVGRGHFGEVQVVREKA----TGDIYAMKVMKKSVLLAQETVSFFEEERDILSI 57

Query: 143 LDHPFLPTL-YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            + P++P L YA  D      L+ E+ PGGDL  L  R  D+ F E   +FY +E+V+A+
Sbjct: 58  SNSPWIPQLQYAFQDKDNLY-LVMEYQPGGDLLSLLNRYEDQ-FDEDMAQFYLAELVLAI 115

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
             +H MG ++RD+KPENVL+   GHI L DF          S A+L +++          
Sbjct: 116 HSVHQMGYVHRDIKPENVLIDRTGHIKLADFG---------SAARLTANKM--------- 157

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                                  V+   P           GTP+ +A             
Sbjct: 158 -----------------------VNSKLPV----------GTPDYIA------------- 171

Query: 322 HEYLAPEI---ISGEG---HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--R 373
                PE+   ++G+G   +G   DWW+LG+  +E+ YG +PF       T  N++   R
Sbjct: 172 -----PEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQR 226

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPF 433
            L+FP++P V     DLI Q L+     R+G +     +  H FF+ ++W  +R + PPF
Sbjct: 227 FLKFPEDPKVSSDFLDLI-QSLLCGQKERLGYE----GLCCHPFFSKIDWNNIRNSLPPF 281

Query: 434 IP 435
           +P
Sbjct: 282 VP 283

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score =  153 bits (388), Expect = 6e-43
 Identities = 106/354 (29%), Positives = 153/354 (43%), Gaps = 87/354 (24%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           LG G  G V L +LK     +G  +A KV+ K  ++  +       E+ IL +  +HPFL
Sbjct: 3   LGKGSFGKVMLARLKE----SGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             LY     P     + EF  GGDL  H+    Q  +RF E+  RFYA+E+  AL FLH 
Sbjct: 59  TQLYCCFQTPDRLFFVMEFVNGGDLMFHI----QKSRRFDEARARFYAAEITSALMFLHD 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
            GIIYRDLK +NVL+  +GH  L DF +  +G                            
Sbjct: 115 KGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG---------------------------- 146

Query: 267 QPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA 326
                     I N    +  C              GTP+ +A                  
Sbjct: 147 ----------IFNGKTTSTFC--------------GTPDYIA------------------ 164

Query: 327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGP 386
           PEI+    +G +VDWW +G+ ++E+  G  PF+  + +     ++   + +P   S    
Sbjct: 165 PEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQ--D 222

Query: 387 AKDLIAQLLVKDPTRRMGSKM--GATAIKRHQFFNGVNWALL--RCAKPPFIPR 436
           A D++   + K+PT R+GS    G  AI RH FF  ++W  L  R  +PPF PR
Sbjct: 223 AVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNRRQIEPPFRPR 276

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score =  146 bits (371), Expect = 2e-40
 Identities = 105/358 (29%), Positives = 176/358 (49%), Gaps = 67/358 (18%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D   +  + +G  G+VYLV+ K         FA K ++K+ L+ RN+  +  +ER+IL 
Sbjct: 1   EDFETIKLISNGAYGAVYLVRHKETRQR----FAMKKINKQNLILRNQIQQVFVERDILT 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             ++PF+ +++ + +  R  C++ E+  GGD   +L+             R Y +E V+A
Sbjct: 57  FAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGA---LPVDMARMYFAETVLA 113

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQP 260
           LE+LH  GI++RDLKP+N+L+ S GHI LTDF LS  G  S +T   + +       ++ 
Sbjct: 114 LEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTT--NLYEGHIEKDTRE- 170

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
               +D+   G    I P  I+         R+   K            P+D  +M  + 
Sbjct: 171 ---FLDKQVCGTPEYIAPEVIL---------RQGYGK------------PVDWWAMGII- 205

Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK- 379
            +E+L                  +G   F   +G TP      E     V++  +E+P+ 
Sbjct: 206 LYEFL------------------VGCVPF---FGDTP------EELFGQVISDDIEWPEG 238

Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW-ALLRCAKPPFIPR 436
           + ++P  A+DLI++LL ++P  R+G+  GA  +K+H+FF G++W  LLR  K  FIP+
Sbjct: 239 DEALPADAQDLISRLLRQNPLERLGTG-GAFEVKQHRFFLGLDWNGLLR-QKAEFIPQ 294

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score =  146 bits (369), Expect = 8e-40
 Identities = 106/367 (28%), Positives = 174/367 (47%), Gaps = 50/367 (13%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V LVQ K    + G  +A K++ K +++ + + +  R ER+IL  
Sbjct: 2   DFESLKVIGRGAFGEVRLVQKK----DTGHIYAMKILRKADMLEKEQVAHIRAERDILVE 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++  ++ +    R   L+ EF PGGD+  L  ++      E A +FY +E V+A++
Sbjct: 58  ADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAID 115

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL--SLKGDNSTSTAQLVSDQSPPTGDQQP 260
            +H +G I+RD+KP+N+L+ + GH+ L+DF L   LK  + T   + ++  +PP+     
Sbjct: 116 AIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLT-HNPPSD---- 170

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
                                    S  +   +RK +       ++        + S VG
Sbjct: 171 ------------------------FSFQNMNSKRKAETWKKNRRQL--------AYSTVG 198

Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFP 378
           T +Y+APE+    G+    DWW+LG+ ++E+  G  PF     + T   V+     L FP
Sbjct: 199 TPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFP 258

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
            E  +   AKDLI +    D   R+GS  G   IK H FF GV+W  +R  +P  IP  +
Sbjct: 259 PEVPISEKAKDLILRFCT-DSENRIGSN-GVEEIKSHPFFEGVDWGHIR-ERPAAIPIEI 315

Query: 439 TCRDLTT 445
              D T+
Sbjct: 316 KSIDDTS 322

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score =  141 bits (357), Expect = 7e-38
 Identities = 106/356 (29%), Positives = 169/356 (47%), Gaps = 40/356 (11%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG G  G V L    ++  +    +A K + K++++ RN+ +  + ER+IL   D+ 
Sbjct: 6   IKTLGIGAFGEVCL----ARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNE 61

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           ++  LY +         + ++ PGGD+  L  R     F E   RFY +E+  A+E +H 
Sbjct: 62  WVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHK 119

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
           MG I+RD+KP+N+L+  DGHI LTDF L   G   T  ++        +GD    D    
Sbjct: 120 MGFIHRDIKPDNILIDRDGHIKLTDFGLC-TGFRWTHDSKYYQ-----SGDHVRQDSMDF 173

Query: 267 QPPFGNSSCIIPNCIVPAVSC---LHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
              +G+ +    NC      C   L P  RR  +           +     + S VGT  
Sbjct: 174 SNEWGDPA----NC-----RCGDRLKPLERRAAR-----------QHQRCLAHSLVGTPN 213

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFPKEP 381
           Y+APE++   G+    DWW++G+ ++E+  G  PF       T   V+    +L  P + 
Sbjct: 214 YIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQA 273

Query: 382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL-LRCAKPPFIPR 436
            +   A DLI + L + P  R+G K GA  IK H FF  ++++  LR    P+IP+
Sbjct: 274 KLSPEASDLIIK-LCRGPEDRLG-KNGADEIKAHPFFKTIDFSSDLRQQSAPYIPK 327

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  136 bits (346), Expect = 2e-37
 Identities = 68/158 (43%), Positives = 92/158 (58%), Gaps = 10/158 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV++KSK       FA K + KR +V   ++     E+EILE  +HPF+ 
Sbjct: 1   LGVGGFGRVELVKVKSK----NRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            LY T    ++  +L E+C GG+L  +LR R     F E   RFY + VV+A E+LH  G
Sbjct: 57  KLYRTFKDKKYIYMLMEYCLGGELWTILRDR---GLFDEYTARFYIACVVLAFEYLHNRG 113

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTST 244
           IIYRDLKPEN+L+ S+G++ L DF  +  LK    T T
Sbjct: 114 IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT 151

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  136 bits (344), Expect = 1e-36
 Identities = 56/127 (44%), Positives = 74/127 (58%), Gaps = 5/127 (3%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R+ +  GT EYLAPEII  +G+G AVDWW LGI I+E+  G  PF   +       ++  
Sbjct: 154 RTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEG 213

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNW-ALL-RCAK 430
            + FP   S    AKDLI  LL  D T+R+G+ K G   IK H +F G++W ALL R  +
Sbjct: 214 KVRFPSFFS--PDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALLQRKIE 271

Query: 431 PPFIPRP 437
            PFIP+ 
Sbjct: 272 APFIPKV 278

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score =  137 bits (346), Expect = 3e-36
 Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 38/355 (10%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG G  G V L    +   +    +A K + K+++++RN+ +  + ER+IL   D+ 
Sbjct: 6   IKTLGIGAFGEVCL----ACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNE 61

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           ++  LY +         + ++ PGGD+  L  R   + F E   RFY +E+ +A+E +H 
Sbjct: 62  WVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHK 119

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ-QPNDCAV 265
           MG I+RD+KP+N+L+  DGHI LTDF L   G   T  ++     S    D  +P+D   
Sbjct: 120 MGFIHRDIKPDNILIDLDGHIKLTDFGLC-TGFRWTHNSKYYQKGSHIRQDSMEPSDLWD 178

Query: 266 DQPPFGNSSCIIPNCIV-PAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           D          + NC     +  L  +  ++ +                 + S VGT  Y
Sbjct: 179 D----------VSNCRCGDRLKTLEQRATKQHQ--------------RCLAHSLVGTPNY 214

Query: 325 LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFPKEPS 382
           +APE++  +G+    DWW++G+ +FE+  G  PF       T   V+     L  P +  
Sbjct: 215 IAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVK 274

Query: 383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL-LRCAKPPFIPR 436
           +   A DLI +L      R   +  GA  IK H FF+ V+++  +R    P++P+
Sbjct: 275 LSPEAVDLITKLCCSAEERLGRN--GADDIKAHPFFSEVDFSSDIRTQPAPYVPK 327

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  131 bits (333), Expect = 5e-36
 Identities = 76/318 (23%), Positives = 117/318 (36%), Gaps = 110/318 (34%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G+VYL + K      G   A K++ K +  S +       E EIL+ L+HP + 
Sbjct: 1   LGEGGFGTVYLARDK----KTGKKVAIKIIKKED--SSSLLEELLREIEILKKLNHPNIV 54

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            LY   +      L+ E+C GG L  L +     +  E  +     +++  LE+LH  GI
Sbjct: 55  KLYGVFEDENHLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGI 113

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           I+RDLKPEN        I+L   +  +K          ++D                   
Sbjct: 114 IHRDLKPEN--------ILLDSDNGKVK----------LAD------------------- 136

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
           FG S  +  +                                     + VGT  Y+APE+
Sbjct: 137 FGLSKLLTSD--------------------------------KSLLKTIVGTPAYMAPEV 164

Query: 330 ISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
           + G+G+     D W+LG+ ++EL                                    K
Sbjct: 165 LLGKGYYSEKSDIWSLGVILYEL---------------------------------PELK 191

Query: 389 DLIAQLLVKDPTRRMGSK 406
           DLI ++L KDP +R  +K
Sbjct: 192 DLIRKMLQKDPEKRPSAK 209

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score =  135 bits (342), Expect = 7e-36
 Identities = 101/367 (27%), Positives = 169/367 (46%), Gaps = 50/367 (13%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V LVQ K    + G  +A K++ K +++ + +    R ER+IL  
Sbjct: 2   DFESLKVIGRGAFGEVRLVQKK----DTGHVYAMKILRKADMLEKEQVGHIRAERDILVE 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++  ++ +        L+ EF PGGD+  L  ++      E   +FY +E V+A++
Sbjct: 58  ADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAID 115

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL--SLKGDNSTSTAQLVSDQSPPTGDQQP 260
            +H +G I+RD+KP+N+L+ S GH+ L+DF L   LK  + T   + ++   P     Q 
Sbjct: 116 SIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQN 175

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
            +       +                     +R +++L                + S VG
Sbjct: 176 MNSKRKAETW---------------------KRNRRQL----------------AFSTVG 198

Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALEFP 378
           T +Y+APE+    G+    DWW+LG+ ++E+  G  PF     + T   V+     L FP
Sbjct: 199 TPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFP 258

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
            E  +   AKDLI +    +   R+G+  G   IK + FF GV+W  +R  +P  IP  +
Sbjct: 259 PEVPISEKAKDLILRFCC-EWEHRIGAP-GVEEIKTNPFFEGVDWEHIR-ERPAAIPIEI 315

Query: 439 TCRDLTT 445
              D T+
Sbjct: 316 KSIDDTS 322

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  129 bits (327), Expect = 2e-34
 Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 8/164 (4%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DL  +  +G+G  G V+LV+ +     +  ++A KVM   E++   +E     E+ +L+
Sbjct: 1   DDLERIKTVGTGTFGRVHLVRDRI----SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLK 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
            + HPF+  L+ T    R+  +L E+ PGG+L   LR      RF  S   FYASE+V A
Sbjct: 57  EVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS---GRFSNSTGLFYASEIVCA 113

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           LE+LH   I+YRDLKPEN+L+  +GHI LTDF  + K  + T T
Sbjct: 114 LEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWT 157

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  124 bits (313), Expect = 2e-32
 Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 12/139 (8%)

Query: 305 EIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGID 362
           E +AE  + R+ SF GT EY+APE+I G   GH  AVDWW+LG+  FEL  G +PF    
Sbjct: 154 EFLAEEEE-RAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDG 212

Query: 363 HELTLANVVARALE----FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            + + + +  R L+    FPK  S    A+D I +LL KDP +R+G+  GA  IK H FF
Sbjct: 213 EQNSQSEISRRILKSKPPFPKTMSA--EARDFIQKLLEKDPKKRLGAN-GADEIKNHPFF 269

Query: 419 NGVNWALL--RCAKPPFIP 435
            G++W  L  +    PF P
Sbjct: 270 QGIDWDDLAAKRIPAPFKP 288

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  123 bits (310), Expect = 2e-32
 Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 13/160 (8%)

Query: 91  GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPT 150
           G G  G V +VQ +    +    FA K M+K++ V +        ER IL+ L+HPFL  
Sbjct: 9   GKGAFGKVCIVQKR----DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVN 64

Query: 151 LYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
           L+ +        L+ +   GGDL  H+ ++     +F E  V+F+  E+V+ALE+LH  G
Sbjct: 65  LWYSFQDEENMYLVVDLLLGGDLRYHLSQKV----KFSEEQVKFWICEIVLALEYLHSKG 120

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLK---GDNSTSTA 245
           II+RD+KP+N+L+   GH+ +TDF+++ K      +TST+
Sbjct: 121 IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTS 160

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score =  121 bits (305), Expect = 3e-31
 Identities = 63/156 (40%), Positives = 94/156 (60%), Gaps = 7/156 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREILE 141
           +   +  LG+G  G V+LV+ K    + G  +A KV+ K  +V + K +   R ER++LE
Sbjct: 1   NFELLRVLGTGAYGKVFLVR-KVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLE 59

Query: 142 MLDH-PFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
            +   PFL TL+          L+ ++  GG+L   L QR+    F ES VR Y +E+V+
Sbjct: 60  AVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQRE---HFTESEVRVYIAEIVL 116

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           AL+ LH +GIIYRD+K EN+L+ S+GH++LTDF LS
Sbjct: 117 ALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  121 bits (305), Expect = 5e-31
 Identities = 65/128 (50%), Positives = 81/128 (63%), Gaps = 6/128 (4%)

Query: 314 RSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           R+ SF GT EY+APEII G+ GHG AVDWW+LGI IFEL  G +PF       T + V  
Sbjct: 162 RTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR 221

Query: 373 RALEF-PKEPSVPGP-AKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--R 427
           R L+  P  PS  GP A+DL+ +LL KDP +R+G+   GA+ IK H FF G++W  L  R
Sbjct: 222 RILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALALR 281

Query: 428 CAKPPFIP 435
              PPF P
Sbjct: 282 KVNPPFRP 289

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  120 bits (304), Expect = 8e-31
 Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 14/161 (8%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           LG G  G V L +LK         +A KV+ K  ++  +       E+ +L +   HPFL
Sbjct: 3   LGKGSFGKVLLAELKGTDE----LYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             L++          + E+  GGDL  H+ R      RF E   RFYA+E+V+ L+FLH 
Sbjct: 59  TQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSG----RFDEPRARFYAAEIVLGLQFLHE 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
            GIIYRDLK +NVL+ S+GHI + DF +    + G  +TST
Sbjct: 115 RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTST 155

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score =  119 bits (300), Expect = 1e-30
 Identities = 58/132 (43%), Positives = 79/132 (59%), Gaps = 5/132 (3%)

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ L  R+ +  GT EYLAPE+I  +GH  AVDWW LGI I+E+  G  PF   +     
Sbjct: 148 AKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIY 207

Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNW--A 424
             ++A  LEFP+   +   AKDLI +LLV D TRR+G+ K GA  +K H++F  V+W   
Sbjct: 208 EKILAGKLEFPR--HLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDV 265

Query: 425 LLRCAKPPFIPR 436
             R  KPP +P+
Sbjct: 266 PQRKLKPPIVPK 277

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score =  118 bits (298), Expect = 2e-30
 Identities = 88/353 (24%), Positives = 139/353 (39%), Gaps = 81/353 (22%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V   Q+++     G  +A K ++K+ L  R     A +E+ IL  +   F+ 
Sbjct: 1   LGKGGFGEVSACQMRA----TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L          CL+     GGDL  H+    + +  F E    FY ++++  LE LH  
Sbjct: 57  SLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR 116

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
            IIYRDLKPENVL+ +DG++ ++D  L++         +L   QS               
Sbjct: 117 RIIYRDLKPENVLLDNDGNVRISDLGLAV---------ELKDGQS--------------- 152

Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
                                       K  G  GTP  +A  L                
Sbjct: 153 ----------------------------KTKGYAGTPGFMAPEL---------------- 168

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSV--PG 385
             + GE +  +VD++ LG+ ++E+     PF+    ++    +  R L            
Sbjct: 169 --LQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSP 226

Query: 386 PAKDLIAQLLVKDPTRRMGSKMGATA-IKRHQFFNGVNWALLRCA--KPPFIP 435
            +K     LL KDP +R+G + G    ++ H  F  +NW  L      PPF+P
Sbjct: 227 ASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEAGMLPPPFVP 279

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score =  119 bits (299), Expect = 3e-30
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 5/135 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
            V + +F GT +Y+APEI+S + +G AVDWW LG+ ++E+  G +PF+G D +    +++
Sbjct: 150 GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSIL 209

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RC 428
              + +P+  S    AK ++   L K+P +R+G    G   IK H FF  ++W  L  + 
Sbjct: 210 EDEVRYPRWLSK--EAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKE 267

Query: 429 AKPPFIPRPVTCRDL 443
            KPPF P+     D+
Sbjct: 268 IKPPFKPKIKGRFDV 282

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  118 bits (297), Expect = 7e-30
 Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 10/159 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFL 148
           +G G  G V L + K+    +G F+A KV+ K+ ++ + ++     ER +L + + HPFL
Sbjct: 3   IGKGSFGKVLLAKHKA----DGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+ +         + ++  GG+L    QR+  + F E   RFYA+E+  AL +LH + 
Sbjct: 59  VGLHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLN 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTST 244
           IIYRDLKPEN+L+ S GH++LTDF L    ++   +TST
Sbjct: 117 IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTST 155

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  117 bits (294), Expect = 2e-29
 Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES-RARIEREILEMLDHPFL 148
           LG G  G V+ V+ K   ++ G  FA KV+ K  +V   K++   + ER ILE + HPF+
Sbjct: 4   LGKGGYGKVFQVR-KVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI 62

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L           L+ E+  GG+L +  +R+    F E    FY SE+ +ALE LH  G
Sbjct: 63  VDLIYAFQTGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQG 120

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTST 244
           IIYRDLKPEN+L+ + GH+ LTDF L   S+     T T
Sbjct: 121 IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHT 159

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  115 bits (290), Expect = 6e-29
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R +  LG G  G V L + K      G  +A K + K ++++R++      E+ I E  +
Sbjct: 2   RCLAVLGRGHFGKVLLAEYK----KTGELYAIKALKKGDIIARDEVESLMCEKRIFETAN 57

Query: 145 ---HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              HPFL  L+A        C + E+  GGDL  +     D  F E    FYA+ VV+ L
Sbjct: 58  SERHPFLVNLFACFQTEDHVCFVMEYAAGGDL--MMHIHTD-VFSEPRAVFYAACVVLGL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG---DNSTST 244
           ++LH   I+YRDLK +N+L+ ++G + + DF L  +G    + TST
Sbjct: 115 QYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTST 160

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score =  115 bits (290), Expect = 7e-29
 Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 7/156 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK-ESRARIEREILE 141
           +   +  LG+G  G V+LV+ K    + G  +A KV+ K  LV + K     R ER +LE
Sbjct: 1   NFELLKVLGTGAYGKVFLVR-KVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLE 59

Query: 142 ML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
            +   PFL TL+          L+ ++  GG++   L QR     F E  VRFY+ E+++
Sbjct: 60  HVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRD---NFSEDEVRFYSGEIIL 116

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ALE LH +GI+YRD+K EN+L+ S+GH++LTDF LS
Sbjct: 117 ALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  113 bits (286), Expect = 7e-29
 Identities = 86/343 (25%), Positives = 135/343 (39%), Gaps = 98/343 (28%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLD 144
              LG G  GSVYL   K    + G   A K +   EL   ++E    +EREI  L  L 
Sbjct: 5   GELLGRGSFGSVYLALDK----DTGELMAVKSV---ELSGDSEEELEALEREIRILSSLQ 57

Query: 145 HPFLPTLYATLDCPRWS------CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           HP +   Y +              +  E+  GG L  L ++    +  E  +R Y  +++
Sbjct: 58  HPNIVRYYGS----ERDEEKNTLNIFLEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQIL 111

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
             L +LH  GI++RD+K  N+LV         D D  +K          ++D        
Sbjct: 112 EGLAYLHSNGIVHRDIKGANILV---------DSDGVVK----------LAD-------- 144

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      FG +                      K+LG+  T E         + S 
Sbjct: 145 -----------FGCA----------------------KRLGDIETGEG--------TGSV 163

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
            GT  ++APE+I GE +G A D W+LG  + E+  G  P+  + + +     +  + E P
Sbjct: 164 RGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPP 223

Query: 379 KEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
           + P  +   AKD + + L +DP +R       TA +  +H F 
Sbjct: 224 EIPEHLSEEAKDFLRKCLRRDPKKR------PTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  113 bits (285), Expect = 8e-29
 Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 6/109 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
             +  +FVGT EY+APE++ G+G+G AVD W+LG+ ++EL  G  PF G D  L L   +
Sbjct: 150 GEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKI 209

Query: 372 ARALE--FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            +      P E  +   AKDLI +LLVKDP +R    + A    +H FF
Sbjct: 210 GKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKR----LTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  114 bits (288), Expect = 1e-28
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 16/130 (12%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R+ +  GT EYLAPE+I  +GHG AVDWWT+G+ ++E       F+  TPF+        
Sbjct: 171 RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFR------IY 224

Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             ++A  L+FP      G A+DL+  LL  D T+R+G+ K G   +K H +F+G NW  L
Sbjct: 225 EKILAGRLKFPN--WFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDKL 282

Query: 427 RCAK-PPFIP 435
                P  IP
Sbjct: 283 YARYYPAPIP 292

Length = 329

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  114 bits (286), Expect = 2e-28
 Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+LV+ K    + G  +A KV+ K  L  R++  R ++ER+IL  ++HPF+ 
Sbjct: 4   LGQGSFGKVFLVR-KITGPDAGQLYAMKVLKKATLKVRDR-VRTKMERDILAEVNHPFIV 61

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L+          L+ +F  GGDL    +   +  F E  V+FY +E+ +AL+ LH +GI
Sbjct: 62  KLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALALDHLHSLGI 119

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           IYRDLKPEN+L+  +GHI LTDF LS
Sbjct: 120 IYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score =  113 bits (285), Expect = 2e-28
 Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 11/182 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFL 148
           +G G  G V L + KS    +G F+A KV+ K+ ++ + +++    ER +L + L HPFL
Sbjct: 3   IGKGSFGKVLLAKRKS----DGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+ +         + ++  GG+L    QR+  + F E   RFYA+EV  A+ +LH + 
Sbjct: 59  VGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLN 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKG---DNSTSTAQLVSDQ-SPPTGDQQPNDCA 264
           IIYRDLKPEN+L+ S GH++LTDF L  +G   + +TST     +  +P    ++P D  
Sbjct: 117 IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRT 176

Query: 265 VD 266
           VD
Sbjct: 177 VD 178

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  112 bits (282), Expect = 3e-28
 Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 11/117 (9%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID------HELTL 367
           ++ +F GT EY+APEII  +G+  +VD+W+LGI ++EL  G  PF   D      +   L
Sbjct: 148 KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDIL 207

Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNW 423
                  LEFP    +   AKDLI QLL ++P  R+G  K G   IK+H++FNG +W
Sbjct: 208 KGN--GKLEFPN--YIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDW 260

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score =  111 bits (280), Expect = 5e-28
 Identities = 80/326 (24%), Positives = 129/326 (39%), Gaps = 90/326 (27%)

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
           +++G G  G VY       + + G   A K +  ++   +  +  A  E ++LE+L HP 
Sbjct: 6   NKIGGGTFGKVYTAV----NLDTGELMAVKEIRIQDNDPKTIKEIAD-EMKVLELLKHPN 60

Query: 148 LPTLYATLDCPRWS-CLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           L   Y  ++  R    +  E+C GG L  +L   +      E  +R Y  +++  L +LH
Sbjct: 61  LVKYYG-VEVHREKVYIFMEYCSGGTLEELLEHGRILD---EHVIRVYTLQLLEGLAYLH 116

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAV 265
             GI++RD+KP N+ +  +G I L                          GD        
Sbjct: 117 SHGIVHRDIKPANIFLDHNGVIKL--------------------------GD-------- 142

Query: 266 DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL 325
               FG +                       KL N  T   + E +     S  GT  Y+
Sbjct: 143 ----FGCA----------------------VKLKNNTTT--MGEEVQ----SLAGTPAYM 170

Query: 326 APEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS 382
           APE+I+G   +GHG A D W+LG  + E+  G  P+  +D+E  +   V        +P 
Sbjct: 171 APEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVG----AGHKPP 226

Query: 383 VPGPA------KDLIAQLLVKDPTRR 402
           +P         KD + + L  DP +R
Sbjct: 227 IPDSLQLSPEGKDFLDRCLESDPKKR 252

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  111 bits (279), Expect = 6e-28
 Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 7/147 (4%)

Query: 93  GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTL 151
           G  GSVYL + +S     G +FA KV+ K +++++N+ +  + ER I+ +  + P++  L
Sbjct: 7   GAFGSVYLAKKRS----TGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKL 62

Query: 152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIY 211
           Y +     +  L+ E+  GGD   L +        E   + Y +EVV+ +E LH  GII+
Sbjct: 63  YYSFQSKDYLYLVMEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRGIIH 120

Query: 212 RDLKPENVLVRSDGHIMLTDFDLSLKG 238
           RD+KPEN+L+   GH+ LTDF LS  G
Sbjct: 121 RDIKPENLLIDQTGHLKLTDFGLSRNG 147

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  111 bits (279), Expect = 1e-27
 Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 7/149 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREILEMLDH-PF 147
           LG+G  G V+LV+ K    ++G  +A KV+ K  +V + K +   R ER++LE +   PF
Sbjct: 8   LGTGAYGKVFLVR-KVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 66

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           L TL+          L+ ++  GG+L   L QR+   RF E  V+ Y+ E+V+ALE LH 
Sbjct: 67  LVTLHYAFQTDTKLHLILDYINGGELFTHLSQRE---RFKEQEVQIYSGEIVLALEHLHK 123

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +GIIYRD+K EN+L+ S+GH++LTDF LS
Sbjct: 124 LGIIYRDIKLENILLDSNGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  112 bits (281), Expect = 2e-27
 Identities = 86/360 (23%), Positives = 134/360 (37%), Gaps = 87/360 (24%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R + +LG G  G VYL + +          A KV+ K+      +  R   E +IL  L+
Sbjct: 3   RILRKLGEGSFGEVYLARDRKL-------VALKVLAKKLESKSKEVERFLREIQILASLN 55

Query: 145 HP-FLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALE 202
           HP  +  LY          L+ E+  GG L  +L++        ES   F  ++++ ALE
Sbjct: 56  HPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALE 115

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           +LH  GII+RD+KPEN        I+L      +K          + D            
Sbjct: 116 YLHSKGIIHRDIKPEN--------ILLDRDGRVVK----------LID------------ 145

Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FG +  +                                  +     + VGT 
Sbjct: 146 -------FGLAKLL--------------------------PDPGSTSSIPALPSTSVGTP 172

Query: 323 EYLAPEIISGEGHGN---AVDWWTLGIFIFELFYGTTPFKGIDHELT-------LANVVA 372
            Y+APE++ G        + D W+LGI ++EL  G  PF+G  +          +  +  
Sbjct: 173 GYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPT 232

Query: 373 RALEFPKEPSVPGP----AKDLIAQLLVKDPTRRMGSKMGAT-AIKRHQFFNGVNWALLR 427
            +L  P  PS P      A DL+ +LL KDP  R+ S    +  +  H      + + L 
Sbjct: 233 PSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDLSDLL 292

Length = 384

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  110 bits (277), Expect = 3e-27
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 14/161 (8%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM-LDHPFL 148
           LG G  G V L +LK  +     FFA K + K  ++  +      +ER +L +  +HPFL
Sbjct: 3   LGKGSFGKVMLAELKGTNE----FFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             L+ T         + E+  GGDL  H+    Q   RF E+  RFYA+E++  L+FLH 
Sbjct: 59  THLFCTFQTKEHLFFVMEYLNGGDLMFHI----QSSGRFDEARARFYAAEIICGLQFLHK 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF---DLSLKGDNSTST 244
            GIIYRDLK +NVL+  DGHI + DF     ++ G+   ST
Sbjct: 115 KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAST 155

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score =  109 bits (275), Expect = 7e-27
 Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           LSD      LG+G  G V + + K      G ++A K + KRE++   +      E+ IL
Sbjct: 17  LSDFEMGETLGTGSFGRVRIAKHKG----TGEYYAIKCLKKREILKMKQVQHVAQEKSIL 72

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
             L HPF+  +  +         L EF  GG+L   LR+     RF     +FY +E+V+
Sbjct: 73  MELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKA---GRFPNDVAKFYHAELVL 129

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           A E+LH   IIYRDLKPEN+L+ + GH+ +TDF  + K  + T T
Sbjct: 130 AFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFT 174

Length = 329

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score =  109 bits (274), Expect = 1e-26
 Identities = 54/154 (35%), Positives = 74/154 (48%), Gaps = 6/154 (3%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D + + ++G G  G V+L + K    + G   A K M K  L   N+      ER+IL 
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKK----DTGEIVALKRMKKSLLFKLNEVRHVLTERDILT 56

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
                +L  L        +  L  E+ PGGD   L          E   RFY +E+  A+
Sbjct: 57  TTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAV 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + LH +G I+RDLKPEN L+ + GHI LTDF LS
Sbjct: 115 DALHELGYIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score =  107 bits (269), Expect = 4e-26
 Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 25/200 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM-LDHPFL 148
           LG G  G V L +LK         +A KV+ K  ++  +       E+ IL +   HPFL
Sbjct: 3   LGKGSFGKVMLAELKGTDE----VYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+           + E+  GGDL  + Q Q  ++F E   RFYA+EV +AL FLH  G
Sbjct: 59  TALHCCFQTKDRLFFVMEYVNGGDL--MFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHG 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKG---DNSTSTAQLVSDQ-SPPTGDQQPNDCA 264
           +IYRDLK +N+L+ ++GH  L DF +  +G     +T+T     D  +P    +     +
Sbjct: 117 VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPS 176

Query: 265 VD--------------QPPF 270
           VD              QPPF
Sbjct: 177 VDWWALGVLMYEMMAGQPPF 196

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score =  107 bits (268), Expect = 6e-26
 Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)

Query: 309 EPLD--VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
           E +D   ++ SF GT EY+APE+++  GH  + DWW+ G+ +FE+  G+ PF+G D + T
Sbjct: 147 ESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKET 206

Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWAL 425
           +  ++   L  P+  S    A+ L+  L  ++P  R+G+   G   IKRH FF+ ++W  
Sbjct: 207 MTMILKAKLGMPQFLS--PEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNK 264

Query: 426 L--RCAKPPFIP 435
           L  R  KPPF P
Sbjct: 265 LYRREIKPPFKP 276

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  106 bits (265), Expect = 6e-26
 Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KL + G      E        FVGT +YLAPE I G G     DWW+LG  IFE  +G  
Sbjct: 137 KLTDFGLSRNGLENKK-----FVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYP 191

Query: 357 PFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR 414
           PF     +    N+++R + +P+E        A DLI +LL  DP +R+G+  G   IK 
Sbjct: 192 PFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGAN-GYQEIKS 250

Query: 415 HQFFNGVNW 423
           H FF  +NW
Sbjct: 251 HPFFKSINW 259

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score =  107 bits (268), Expect = 8e-26
 Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 12/160 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIEREILEML-DHPF 147
           +G G    V LV+LK         +A KV+ K+ELV+ +++    + E+ + E   +HPF
Sbjct: 3   IGRGSYAKVLLVELKKTRR----IYAMKVI-KKELVNDDEDIDWVQTEKHVFETASNHPF 57

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           L  L++          + EF  GGDL    QRQ  ++  E   RFY++E+ +AL FLH  
Sbjct: 58  LVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHER 115

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTST 244
           GIIYRDLK +NVL+ ++GHI LTD+ +    ++  ++TST
Sbjct: 116 GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTST 155

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score =  106 bits (267), Expect = 1e-25
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++  + +   VDWW LG  ++E+ YG  PF   D      N++ + L 
Sbjct: 155 TFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLR 214

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCAKPPFI 434
               P++   A+ L+  LL KD T+R+G+K     IK H FF+ +NW  L  +   PPF 
Sbjct: 215 LK--PNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPFN 272

Query: 435 PRPVTCRDLTT-----TNSSIDNSI 454
           P      DL       T   + NS+
Sbjct: 273 PNVSGPMDLKHFDPEFTEEPVPNSV 297

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score =  105 bits (264), Expect = 1e-25
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 11/131 (8%)

Query: 314 RSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           R+ SF GT EY+AP+I+ G   GH  AVDWW++G+ ++EL  G +PF     + + A + 
Sbjct: 162 RAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEIS 221

Query: 372 ARALEFPKEPSVP---GP-AKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
            R L+   EP  P      AKD+I +LL+KDP +R+G     A  IK+H FF  +NW  L
Sbjct: 222 RRILK--SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDDL 279

Query: 427 RCAK--PPFIP 435
              K   PF P
Sbjct: 280 AAKKVPAPFKP 290

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score =  105 bits (265), Expect = 2e-25
 Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 5/125 (4%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R+ +F GT E+LAPE+++   +  AVDWW LG+ I+E+  G +PF G D E    ++V  
Sbjct: 157 RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVND 216

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWA--LLRCAK 430
            + +P+  S    +  ++ +LL ++P RR+GS +  A  +K+  FF  +NW   L R  K
Sbjct: 217 EVRYPRFLSREAIS--IMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARKIK 274

Query: 431 PPFIP 435
           PPF+P
Sbjct: 275 PPFVP 279

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score =  106 bits (265), Expect = 2e-25
 Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 12/161 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE---MLDHP 146
           +G G  G VY V+ K    +    +A KV+ K+E+V++ + +    ER IL    + + P
Sbjct: 1   IGKGTFGQVYQVRKK----DTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESP 56

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           F+  L  +        L+T++  GG+L      Q + RF E   +FY +E+V+ALE LH 
Sbjct: 57  FIVGLKFSFQTDSDLYLVTDYMSGGEL--FWHLQKEGRFSEDRAKFYIAELVLALEHLHK 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
             I+YRDLKPEN+L+ + GHI L DF LS   L  + +T+T
Sbjct: 115 YDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNT 155

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score =  105 bits (264), Expect = 2e-25
 Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 11/182 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFL 148
           +G G  G V L    +K   +G  +A KV+ K+ +++R ++     ER +L + + HPFL
Sbjct: 3   IGKGSFGKVLL----AKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+ +         + +F  GG+L    QR+  + F E   RFYA+E+  AL +LH + 
Sbjct: 59  VGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSIN 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKG----DNSTSTAQLVSDQSPPTGDQQPNDCA 264
           I+YRDLKPEN+L+ S GH++LTDF L  +G    D +T+        +P    +QP D  
Sbjct: 117 IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNT 176

Query: 265 VD 266
           VD
Sbjct: 177 VD 178

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score =  105 bits (263), Expect = 3e-25
 Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 5/122 (4%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EY+APEI+   GHG AVDWW+LG  ++++  G  PF   + + T+  ++   L 
Sbjct: 159 TFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLN 218

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMG-ATAIKRHQFFNGVNW--ALLRCAKPPF 433
            P  P +   A+DL+ +LL ++P+ R+G+  G A  ++ H FF  VNW   L R  +PPF
Sbjct: 219 LP--PYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWDDLLARKVEPPF 276

Query: 434 IP 435
            P
Sbjct: 277 KP 278

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score =  105 bits (262), Expect = 3e-25
 Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++ +F GT EYLAPE++ G G+  AVDWWTLG+ ++E+  G  PF   +       ++
Sbjct: 147 DDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKIL 206

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK- 430
              L FP        AKDL+  LL +DPTRR+G   GA  IK H FF+ ++W  L   K 
Sbjct: 207 QEPLRFPD--GFDRDAKDLLIGLLSRDPTRRLGYN-GAQEIKNHPFFSQLSWKKL-LMKG 262

Query: 431 --PPFIPRPVTCRDLTTTNSSIDNSI 454
             PPF P   +  D +  +       
Sbjct: 263 IQPPFKPAVSSAIDTSNFDEEFTREK 288

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score =  108 bits (271), Expect = 4e-25
 Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 14/160 (8%)

Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ +   V  +  G  G VYL + K    NN   +A KV+ K +++++N   + + ER+ 
Sbjct: 2   SIEEFVIVKPISRGAFGKVYLGRKK----NNSKLYAVKVVKKADMINKNMVHQVQAERDA 57

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGD----LHVLRQRQPDKRFHESAVRFYAS 195
           L +   PF+  LY +L       L+ E+  GGD    LH+         F E     Y S
Sbjct: 58  LALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIY------GYFDEEMAVKYIS 111

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           EV +AL++LH  GII+RDLKP+N+L+ ++GHI LTDF LS
Sbjct: 112 EVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLS 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  104 bits (260), Expect = 6e-25
 Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 5/122 (4%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIR 213

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  S    AK L+A LL KDP +R+ G    A  I  H+FF  +NW  +   K  PPF
Sbjct: 214 FPRTLS--PEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLEPPF 271

Query: 434 IP 435
            P
Sbjct: 272 KP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score =  104 bits (260), Expect = 7e-25
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 10/157 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  +L+   HPFL 
Sbjct: 3   LGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLT 58

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
            L          C + E+  GG+L  H+ R+R     F E   RFY +E+V ALE+LH  
Sbjct: 59  ALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAEIVSALEYLHSR 114

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            ++YRD+K EN+++  DGHI +TDF L  +G +  +T
Sbjct: 115 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT 151

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score =  104 bits (260), Expect = 8e-25
 Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
            + ++ +F GT +Y+APEI+ G+ +  +VDWW+ G+ ++E+  G +PF G D +    ++
Sbjct: 149 GEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSI 208

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RC 428
           +     FP+   +   AKD +++L  +DPT+R+G       I++H FF G++W  L  R 
Sbjct: 209 LNDRPHFPR--WISKEAKDCLSKLFERDPTKRLGVD---GDIRQHPFFRGIDWERLEKRE 263

Query: 429 AKPPFIPR 436
             PPF P+
Sbjct: 264 IPPPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score =  103 bits (258), Expect = 1e-24
 Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 10/147 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  +L+   HPFL 
Sbjct: 3   LGKGTFGKVILVREKA----TGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLT 58

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
            L  +       C + E+  GG+L  H+ R+R     F E   RFY +E+V AL +LH  
Sbjct: 59  ALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAEIVSALGYLHSC 114

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDL 234
            ++YRDLK EN+++  DGHI +TDF L
Sbjct: 115 DVVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  104 bits (259), Expect = 1e-24
 Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 5/129 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   ++
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIK 213

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  ++   AK L++ LL+KDP +R+G     A  I RH FF GVNW  +   K  PPF
Sbjct: 214 FPR--TLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQDVYDKKLVPPF 271

Query: 434 IPRPVTCRD 442
            P+  +  D
Sbjct: 272 KPQVTSETD 280

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score =  102 bits (256), Expect = 3e-24
 Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 10/159 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV+ K+    +G ++A K++ K  ++++++ +    E  +L+   HPFL 
Sbjct: 3   LGKGTFGKVILVREKA----SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLT 58

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L  +       C + E+  GG+L  H+ R+R     F E   RFY +E+V AL++LH  
Sbjct: 59  SLKYSFQTKDRLCFVMEYVNGGELFFHLSRERV----FSEDRTRFYGAEIVSALDYLHSG 114

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            I+YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 115 KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMK 153

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score =  102 bits (256), Expect = 3e-24
 Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 9/183 (4%)

Query: 64  KEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCF--FAAKVMDK 121
           K+ +         N +   D  F+  LG+G  G V L   K     N  F   A K  +K
Sbjct: 12  KKDSDSTKEPKRKNKMKYEDFNFIRTLGTGSFGRVILATYK-----NEDFPPVAIKRFEK 66

Query: 122 RELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP 181
            +++ + +      ER+IL  ++HPF   LY +     +  L+ EF  GG+     +R  
Sbjct: 67  SKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRR-- 124

Query: 182 DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           +KRF      FYA+++V+  E+L  + I+YRDLKPEN+L+  DG I +TDF  +   D  
Sbjct: 125 NKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR 184

Query: 242 TST 244
           T T
Sbjct: 185 TYT 187

Length = 340

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  100 bits (252), Expect = 3e-24
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--L 140
               + ++G G  G VY      +    G   A KV+         KE + +I  EI  L
Sbjct: 1   LFEILEKIGKGGFGEVYKA----RHKRTGKEVAIKVIKLES-----KEKKEKIINEIQIL 51

Query: 141 EMLDHPFLPTLYATLDCPR--WSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEV 197
           +   HP +   Y +       W  +  EFC GG L  +L+    ++   ES + +   E+
Sbjct: 52  KKCKHPNIVKYYGSYLKKDELWIVM--EFCSGGSLKDLLKST--NQTLTESQIAYVCKEL 107

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  LE+LH  GII+RD+K  N+L+ SDG + L DF LS
Sbjct: 108 LKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLS 145

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score =  102 bits (255), Expect = 3e-24
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 14/161 (8%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           LG G  G V+L +LK        FFA K + K  ++  +      +E+ +L +  +HPFL
Sbjct: 3   LGKGSFGKVFLAELKG----TNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             LY T         + E+  GGDL  H+    Q   +F      FYA+E++  L+FLH 
Sbjct: 59  THLYCTFQTKENLFFVMEYLNGGDLMFHI----QSCHKFDLPRATFYAAEIICGLQFLHS 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTST 244
            GI+YRDLK +N+L+ +DGHI + DF +   ++ GD  T T
Sbjct: 115 KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCT 155

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score =  102 bits (254), Expect = 4e-24
 Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 11/182 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFL 148
           +G G  G V L + K++      F+A KV+ K+ ++ + +E     ER +L + + HPFL
Sbjct: 3   IGKGSFGKVLLARHKAEEK----FYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+ +         + ++  GG+L    QR+  + F E   RFYA+E+  AL +LH + 
Sbjct: 59  VGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLN 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTSTAQLVSDQ-SPPTGDQQPNDCA 264
           I+YRDLKPEN+L+ S GHI+LTDF L   +++ + +TST     +  +P    +QP D  
Sbjct: 117 IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRT 176

Query: 265 VD 266
           VD
Sbjct: 177 VD 178

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score =  101 bits (253), Expect = 6e-24
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 9/136 (6%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
              + +F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF G D +    +++
Sbjct: 155 GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIM 214

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATA---IKRHQFFNGVNWALL-- 426
              + +PK  S+   A  +   LL K P +R+G   G T    I+ H FF  ++W  L  
Sbjct: 215 EHNVSYPK--SLSKEAVSICKGLLTKHPAKRLGC--GPTGERDIREHAFFRRIDWEKLER 270

Query: 427 RCAKPPFIPRPVTCRD 442
           R  +PPF P+    R 
Sbjct: 271 REIQPPFKPKVKGRRS 286

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score =  100 bits (249), Expect = 2e-23
 Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 5/123 (4%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 213

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNW--ALLRCAKPPF 433
           FP+  ++   AK L+A LL KDP +R+ G    A  +  H+FF  +NW   + +   PPF
Sbjct: 214 FPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF 271

Query: 434 IPR 436
            P+
Sbjct: 272 KPQ 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 98.7 bits (247), Expect = 2e-23
 Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 7/161 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G VYLV  + KS      +  K +D   +  + +E  A  E +IL+ L+HP + 
Sbjct: 8   IGKGSFGKVYLV--RRKSDGK--LYVLKEIDLSNMSEKERE-DALNEVKILKKLNHPNII 62

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
             Y + +     C++ E+  GGDL   + +Q++  K F E  +  +  ++ +AL++LH  
Sbjct: 63  KYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR 122

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
            I++RD+KP+N+ + S+G + L DF +S    ++   A+ V
Sbjct: 123 KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTV 163

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 99.3 bits (247), Expect = 2e-23
 Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 18/234 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V   Q+++     G  +A K ++K+ +  R  ES A  E++ILE ++  F+ 
Sbjct: 8   LGKGGFGEVCACQVRA----TGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVV 63

Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
            L    +     CL+     GGDL  H+     P   F E    FYA+E++  LE LH  
Sbjct: 64  NLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPG--FEEERALFYAAEILCGLEDLHRE 121

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK---GDNSTSTAQLVSDQSPPTGDQQPNDCA 264
             +YRDLKPEN+L+   GHI ++D  L++K   G++       V   +P   + Q    +
Sbjct: 122 NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLS 181

Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
              P +    C+I   I        P R RK+K+        V E  +V S  F
Sbjct: 182 ---PDYWGLGCLIYEMI----EGQSPFRGRKEKVKREEVDRRVLETEEVYSAKF 228

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 99.5 bits (248), Expect = 3e-23
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 25/207 (12%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D  F+  LG G  G V L + K         +A K++ K  ++  +      +E+ +L +
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDE----LYAIKILKKDVIIQDDDVECTMVEKRVLAL 56

Query: 143 LDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              P FL  L++          + E+  GGDL  +   Q   +F E    FYA+E+ + L
Sbjct: 57  PGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGKFKEPHAVFYAAEIAIGL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTSTAQLVSDQ-SPPTGD 257
            FLH  GIIYRDLK +NV++ ++GHI + DF +   ++ G  +T T     D  +P    
Sbjct: 115 FFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIA 174

Query: 258 QQPNDCAVD--------------QPPF 270
            QP   +VD              QPPF
Sbjct: 175 YQPYGKSVDWWAFGVLLYEMLAGQPPF 201

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 99.3 bits (247), Expect = 4e-23
 Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 7/127 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++ +F GT +Y+APEI+ G+ +  +VDWW+ G+ ++E+  G +PF G D E    ++ 
Sbjct: 150 DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIR 209

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P+  +    AKD++ +L V++P RR+G K     I++H FF  ++W+ L  R  
Sbjct: 210 MDNPCYPRWLTR--EAKDILVKLFVREPERRLGVK---GDIRQHPFFREIDWSALEEREI 264

Query: 430 KPPFIPR 436
           +PPF P+
Sbjct: 265 EPPFKPK 271

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 99.1 bits (247), Expect = 5e-23
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 28/155 (18%)

Query: 313 VRSMSFVGTHEYLAPEII----SGEGH-GNAVDWWTLGIFIFELFYGTTPF--------- 358
           V+S   VGT +Y++PEI+     G+G  G   DWW+LG+ ++E+ YG TPF         
Sbjct: 158 VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY 217

Query: 359 -KGIDHELTLANVVARALEFP-KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ 416
            K ++H+           +FP     V   AKDLI +L+   P  R+G + G    K H 
Sbjct: 218 GKIMNHK--------EHFQFPPDVTDVSEEAKDLIRRLICS-PETRLG-RNGLQDFKDHP 267

Query: 417 FFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSID 451
           FF G++W  +R +  P++P   +  D  T+N  +D
Sbjct: 268 FFEGIDWDNIRNSTAPYVPEVSSPTD--TSNFDVD 300

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 97.9 bits (244), Expect = 1e-22
 Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 10/126 (7%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN------V 370
           S VG+ +Y+APE++ G+G+   VD+W+LG  ++E   G  PF G     T  N       
Sbjct: 157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKET 216

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK 430
           + R +      ++   A DLI +L+  DP+RR GS      IK H FF  V+W  LR  K
Sbjct: 217 LQRPVYDDPRFNLSDEAWDLITKLI-NDPSRRFGSL---EDIKNHPFFKEVDWNELRELK 272

Query: 431 PPFIPR 436
           PPF+P 
Sbjct: 273 PPFVPE 278

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 97.7 bits (243), Expect = 1e-22
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 9/158 (5%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G V  V+ +         +A K + K  +VSR++ +    ER +L  ++ PF+ 
Sbjct: 1   IGKGSFGKVMQVRKRDTQR----IYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L  +   P    L+  F  GG+L    QR+   RF  S  RFY +E++ ALE LH   +
Sbjct: 57  PLKFSFQSPEKLYLVLAFINGGELFHHLQRE--GRFDLSRARFYTAELLCALENLHKFNV 114

Query: 210 IYRDLKPENVLVRSDGHIMLTDF---DLSLKGDNSTST 244
           IYRDLKPEN+L+   GHI L DF    L++K D+ T+T
Sbjct: 115 IYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT 152

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 97.8 bits (243), Expect = 1e-22
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  +L+   HPFL 
Sbjct: 3   LGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLT 58

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MG 208
            L  +       C + E+  GG+L     R  ++ F E   RFY +E+V AL++LH    
Sbjct: 59  ALKYSFQTHDRLCFVMEYANGGELFFHLSR--ERVFSEDRARFYGAEIVSALDYLHSEKN 116

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 117 VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 154

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 96.8 bits (241), Expect = 1e-22
 Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE++  E +  + DWW LG  I+E+  G +PF+    ++    V  R  E  
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQ 221

Query: 379 KEPS--VPGPAKDLIAQLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWALLRCAK--PPF 433
           +E S      A+ +  QLL KDP  R+G +  GA  +K H FF   N+  L      PPF
Sbjct: 222 EEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPF 281

Query: 434 IPRP 437
            P P
Sbjct: 282 CPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 96.6 bits (240), Expect = 1e-22
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V  VQ+K    N G  +A K +DK+ L  ++ E  A +E+EILE ++ PF+ 
Sbjct: 1   LGKGGFGEVCAVQVK----NTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIV 56

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L    +     CL+     GGDL        ++      V  Y++++   +  LH M I
Sbjct: 57  NLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDI 116

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +YRD+KPENVL+   G+  L+D  L+++  +  +  Q
Sbjct: 117 VYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQ 153

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 96.9 bits (241), Expect = 2e-22
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 14/161 (8%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           LG G  G V L +LK K    G +FA K + K  ++  +      +E+ +L +  ++PFL
Sbjct: 3   LGKGSFGKVLLAELKGK----GEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFL 58

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             LY T         + EF  GGDL  H+    Q   RF      FYA+E+V  L+FLH 
Sbjct: 59  THLYCTFQTKEHLFFVMEFLNGGDLMFHI----QDKGRFDLYRATFYAAEIVCGLQFLHS 114

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTST 244
            GIIYRDLK +NV++  DGHI + DF +   ++ GDN  ST
Sbjct: 115 KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAST 155

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 96.3 bits (239), Expect = 5e-22
 Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 12/160 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIEREILEMLD-HPF 147
           +G G    V LV+LK     N   +A KV+ K+ELV  +++    + E+ + E    +PF
Sbjct: 3   IGRGSYAKVLLVRLK----KNDQIYAMKVV-KKELVHDDEDIDWVQTEKHVFEQASSNPF 57

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           L  L++         L+ E+  GGDL    QRQ  ++  E   RFYA+E+ +AL FLH  
Sbjct: 58  LVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHER 115

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKG---DNSTST 244
           GIIYRDLK +NVL+ +DGHI LTD+ +  +G    ++TST
Sbjct: 116 GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTST 155

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 95.8 bits (238), Expect = 6e-22
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 7/133 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D R+ +F GT +Y+APEI+ G  +  +VDWW+ G+ ++E+  G +PF G D +    ++ 
Sbjct: 150 DNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIR 209

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P+   +   +KD++ +L  +DPTRR+G       I+ H FF  +NW  L  R  
Sbjct: 210 VDTPHYPR--WITKESKDILEKLFERDPTRRLGV---VGNIRGHPFFKTINWTALEKREL 264

Query: 430 KPPFIPRPVTCRD 442
            PPF P+  +  D
Sbjct: 265 DPPFKPKVKSPSD 277

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 96.4 bits (240), Expect = 8e-22
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 28/151 (18%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGH----GNAVDWWTLGIFIFELFYGTTPF---------- 358
           VR  + VGT +Y++PE++  +G     G   DWW++G+F++E+  G TPF          
Sbjct: 198 VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYS 257

Query: 359 KGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           K +DH+         +L FP +  +   AKDLI   L  D   R+G + G   IK H FF
Sbjct: 258 KIMDHK--------NSLTFPDDIEISKQAKDLICAFLT-DREVRLG-RNGVDEIKSHPFF 307

Query: 419 --NGVNWALLRCAKPPFIPRPVTCRDLTTTN 447
             +   +  +R    P +P   +  D+ T+N
Sbjct: 308 KNDQWTFDNIRETVAPVVPELSS--DIDTSN 336

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 95.4 bits (237), Expect = 1e-21
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +D R+ +  GT EY+APEI+   GHG A DWWTLGIFI+E+  G  PF   +  L  
Sbjct: 178 AKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIY 237

Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             ++   + FPK   +    K L+ +LL  D T+R G+ K GA  +K H +F  ++W  L
Sbjct: 238 QKILEGIIYFPK--FLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSL 295

Query: 427 --RCAKPPFIPR 436
             +  + P+ P+
Sbjct: 296 LHKNVEVPYKPK 307

Length = 340

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 94.7 bits (235), Expect = 1e-21
 Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 155 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIR 214

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  ++   AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PPF
Sbjct: 215 FPR--TLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVYEKKLVPPF 272

Query: 434 IPR 436
            P+
Sbjct: 273 KPQ 275

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 93.4 bits (232), Expect = 2e-21
 Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V   Q+++     G  +A K ++K+ +  R  E+ A  E++ILE ++  F+ 
Sbjct: 8   LGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVV 63

Query: 150 TL---YATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           +L   Y T D     CL+     GGDL  H+     P   F E    FYA+E+   LE L
Sbjct: 64  SLAYAYETKDA---LCLVLTLMNGGDLKFHIYNMGNPG--FDEERAVFYAAEITCGLEDL 118

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           H   I+YRDLKPEN+L+   GHI ++D  L+++
Sbjct: 119 HRERIVYRDLKPENILLDDYGHIRISDLGLAVE 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%)

Query: 289 HPKRRRKKKLGNP-GTPEIVAE-PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
             +  ++ K+G P  TP+ V      V     +GT +YLAPE++ G+ HG AVDWW LG+
Sbjct: 509 LYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGV 568

Query: 347 FIFELFYGTTPFKGIDHELTLANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGS 405
            +FE   G  PF     +    N++ R + +P+ E  +   A++ I  LL  DPT+R G 
Sbjct: 569 CLFEFLTGIPPFNDETPQQVFQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKRAGL 628

Query: 406 KMGATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
           K     +K+H  F+GV+W  L+    PFIP+P
Sbjct: 629 K----ELKQHPLFHGVDWENLQNQTMPFIPQP 656

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 94.5 bits (235), Expect = 3e-21
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 10/179 (5%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +   D   +  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+
Sbjct: 40  MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQ----VYAMKLLSKFEMIKRSDSAFFWEERD 95

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   +  ++  L+      ++  ++ E+ PGGDL  L     +    E   RFY +EVV
Sbjct: 96  IMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNL---MSNYDIPEKWARFYTAEVV 152

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
           +AL+ +H MG I+RD+KP+N+L+   GH+ L DF   +K D   +   +  D +  T D
Sbjct: 153 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMD---ANGMVRCDTAVGTPD 208

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 92.4 bits (229), Expect = 5e-21
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 4/147 (2%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V   Q+++     G  +A K ++K+ +  R  ES A  E++ILE ++  F+ 
Sbjct: 8   LGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVV 63

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
           +L    +     CL+     GGDL        +  F E    FYA+E+   LE LH   I
Sbjct: 64  SLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERI 123

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSL 236
           +YRDLKPEN+L+   GHI ++D  L++
Sbjct: 124 VYRDLKPENILLDDHGHIRISDLGLAV 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 92.8 bits (230), Expect = 7e-21
 Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 9/151 (5%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIEREILEML-DHPF 147
           +G G    V LV+LK         +A KV+ K+ELV+ +++    + E+ + E   +HPF
Sbjct: 3   IGRGSYAKVLLVRLKKTER----IYAMKVV-KKELVNDDEDIDWVQTEKHVFEQASNHPF 57

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           L  L++          + E+  GGDL    QRQ  ++  E   RFY++E+ +AL +LH  
Sbjct: 58  LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER 115

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
           GIIYRDLK +NVL+ S+GHI LTD+ +  +G
Sbjct: 116 GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 146

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 92.7 bits (230), Expect = 9e-21
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 9/144 (6%)

Query: 317 SFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F GT EYLAPE++  E G+   VD+W+LG+ +FE+  G +PF   D +    N+    +
Sbjct: 155 TFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKV 214

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCAKPPF 433
            FPK   +    +  +  LL ++P  R+G+   A  +K H FF  ++W LL  +   PPF
Sbjct: 215 RFPKN-VLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWDLLSKKQITPPF 273

Query: 434 IPR-----PVTCRDLTTTNSSIDN 452
            P       V+  D   TNSS+ N
Sbjct: 274 KPIVDSDEDVSNFDPEFTNSSLLN 297

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 5/129 (3%)

Query: 309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA 368
           EP +  S +F GT EYLAPE++  E +   VDWW LG  ++E+ YG  PF   D      
Sbjct: 148 EPEETTS-TFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYD 206

Query: 369 NVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL-- 426
           N++ + L+ P   +V   A DL+  LL KD  RR+G+K     IK H FF+ +NW  L  
Sbjct: 207 NILHKPLQLPGGKTV--AACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLYH 264

Query: 427 RCAKPPFIP 435
           +   PP+ P
Sbjct: 265 KRITPPYNP 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 92.0 bits (228), Expect = 1e-20
 Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++  + +   VDWW LG  ++E+ YG  PF   +      N++ + L+
Sbjct: 155 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQ 214

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK--PPFI 434
              +P++   A+ L+  LL KD T+R+G+K     IK H FF+ +NW  L   K  PPF 
Sbjct: 215 L--KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDDLINKKITPPFN 272

Query: 435 PRPVTCRDLTT-----TNSSIDNSI 454
           P      DL       T   + NSI
Sbjct: 273 PNVSGPNDLRHFDPEFTEEPVPNSI 297

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V++K    N G  +A K+++K E++ R + +  R ER++L  
Sbjct: 2   DFEILKVIGRGAFGEVAVVKMK----NTGQVYAMKILNKWEMLKRAETACFREERDVLVN 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++  L+          L+ ++  GGDL  L  +  D R  E   RFY +E+V+A++
Sbjct: 58  GDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFED-RLPEDMARFYLAEMVLAID 116

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
            +H +G ++RD+KP+NVL+  +GHI L DF   L+     +    V+  +P
Sbjct: 117 SVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTP 167

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   V  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+I+  
Sbjct: 44  DYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIKRSDSAFFWEERDIMAF 99

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            + P++  L+      R+  ++ E+ PGGDL  L     +    E   RFY +EVV+AL+
Sbjct: 100 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAEVVLALD 156

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            +H MG I+RD+KP+N+L+   GH+ L DF   +K
Sbjct: 157 AIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 191

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 90.5 bits (224), Expect = 4e-20
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           + +F GT EYLAPE+I  + + N VDWW LG  ++E+ YG  PF   D      N++ + 
Sbjct: 153 TTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKP 212

Query: 375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK--PP 432
           L     P     A  ++ +LL KD  RR+G+K     I+ H FF  ++W  L   K  PP
Sbjct: 213 LVL--RPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQKKIPPP 270

Query: 433 FIPRPVTCRDLTT-----TNSSIDNSI 454
           F P      D++      T  ++  S+
Sbjct: 271 FNPNVEGPDDISNFDAVFTEETVPYSV 297

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 89.6 bits (222), Expect = 4e-20
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 11/150 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHP 146
           +G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER +L ++   D P
Sbjct: 2   IGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCP 57

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           F+  +      P     + +   GGDLH  L Q      F E+ +RFYA+E+++ LE +H
Sbjct: 58  FIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEAEMRFYAAEIILGLEHMH 114

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 115 NRFVVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 91.2 bits (226), Expect = 5e-20
 Identities = 52/159 (32%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   V  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+I+  
Sbjct: 44  DYDVVKVIGRGAFGEVQLVRHKSSQK----VYAMKLLSKFEMIKRSDSAFFWEERDIMAF 99

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            + P++  L+      ++  ++ E+ PGGDL  L     +    E   +FY +EVV+AL+
Sbjct: 100 ANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNL---MSNYDVPEKWAKFYTAEVVLALD 156

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            +H MG+I+RD+KP+N+L+   GH+ L DF   +K D +
Sbjct: 157 AIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDET 195

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 88.9 bits (220), Expect = 9e-20
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE+++ + +  + D+W LG  I+E+  G +PF+G   ++    V  R LE  
Sbjct: 162 VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETE 221

Query: 379 KEPSV--PGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCA--KPPF 433
           +  S      AK +   LL KDP +R+G +  GA  +KRH FF  +N+  L      PPF
Sbjct: 222 EVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPF 281

Query: 434 IPRP 437
           +P P
Sbjct: 282 VPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 88.9 bits (220), Expect = 1e-19
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D  F+  LG G  G V L + K         +A K++ K  ++  +      +E+ +L +
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKG----TDELYAIKILKKDVVIQDDDVECTMVEKRVLAL 56

Query: 143 LDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            D P FL  L++          + E+  GGDL  +   Q   +F E    FYA+E+ V L
Sbjct: 57  QDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDL--MYHIQQVGKFKEPQAVFYAAEISVGL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            FLH  GIIYRDLK +NV++ S+GHI + DF +
Sbjct: 115 FFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 88.2 bits (218), Expect = 2e-19
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI-------D 362
           P D  S +F GT  Y+APEI+ GE +G +VDWW LG+ +FE+  G +PF  I        
Sbjct: 149 PGDTTS-TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNT 207

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM--GATAIKRHQFFNG 420
            +     ++ + +  P+  SV   A  ++   L KDP  R+G +   G + IK H FF  
Sbjct: 208 EDYLFQVILEKPIRIPRFLSV--KASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRS 265

Query: 421 VNWALL--RCAKPPFIPR 436
           ++W LL  +   PPF P+
Sbjct: 266 IDWDLLEKKQVTPPFKPQ 283

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V + +F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF G D +    +++ 
Sbjct: 156 VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIME 215

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCA 429
             + +PK  S+   A  +   L+ K P++R+G    G   I+ H FF  ++W  L  R  
Sbjct: 216 HNVSYPK--SLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKLENREI 273

Query: 430 KPPFIPR 436
           +PPF P+
Sbjct: 274 QPPFKPK 280

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 87.8 bits (217), Expect = 2e-19
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 11/150 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHP 146
           +G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER +L ++   D P
Sbjct: 2   IGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCP 57

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           F+  +      P   C + +   GGDLH  L Q      F E  +RFYA+E+++ LE +H
Sbjct: 58  FIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQH---GVFSEKEMRFYATEIILGLEHMH 114

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 115 NRFVVYRDLKPANILLDEHGHVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 87.7 bits (217), Expect = 3e-19
 Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V + +F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF+G D +    +++ 
Sbjct: 156 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIME 215

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCA 429
             + +PK  S+   A  +   L+ K P +R+G    G   IK H FF  ++W  L  +  
Sbjct: 216 HNVAYPK--SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEV 273

Query: 430 KPPFIPR 436
           +PP+ P+
Sbjct: 274 QPPYKPK 280

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 87.6 bits (217), Expect = 4e-19
 Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 16/148 (10%)

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI-------- 361
           P D  S +F GT  Y+APEI+ GE +G +VDWW LG+ +FE+  G +PF  +        
Sbjct: 149 PGDTTS-TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQ 207

Query: 362 DHELTLANVV-ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM--GATAIKRHQFF 418
           + E  L  V+  + +  P+  SV   A  ++   L KDP  R+G     G   IK H FF
Sbjct: 208 NTEDYLFQVILEKQIRIPRSLSV--KASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFF 265

Query: 419 NGVNWALL--RCAKPPFIPRPVTCRDLT 444
             ++W LL  +   PP+ P   + RDL 
Sbjct: 266 RNIDWDLLEQKQVLPPYKPNIESDRDLD 293

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 87.0 bits (215), Expect = 4e-19
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 8/156 (5%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
            R    LG G  G V   Q+++     G  +A K ++K+ +  R  E+ A  E+ ILE +
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEKRILEKV 57

Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVAL 201
           +  F+ +L    +     CL+     GGDL  H+     P   F E    FYA+E+   L
Sbjct: 58  NSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPG--FDEQRAIFYAAELCCGL 115

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           E L    I+YRDLKPEN+L+   GHI ++D  L+++
Sbjct: 116 EDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQ 151

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 87.8 bits (217), Expect = 4e-19
 Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V+LK    N    FA K+++K E++ R + +  R ER++L  
Sbjct: 2   DFEILKVIGRGAFGEVAVVKLK----NADKVFAMKILNKWEMLKRAETACFREERDVLVN 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D+ ++ TL+          L+ ++  GGDL  L  +  D R  E   RFY +E+V+A++
Sbjct: 58  GDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFED-RLPEDMARFYLAEMVIAID 116

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            +H +  ++RD+KP+N+L+  +GHI L DF   LK
Sbjct: 117 SVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 151

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 86.1 bits (214), Expect = 5e-19
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 15/158 (9%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           SDL  V  LG G  G VY V+ K      G  +A K +     V  ++E R ++ RE L+
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKP----TGKIYALKKI----HVDGDEEFRKQLLRE-LK 51

Query: 142 ML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            L   + P++   Y          ++ E+  GG L  L ++    +  E  + + A +++
Sbjct: 52  TLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKK--VGKIPEPVLAYIARQIL 109

Query: 199 VALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L++LH    II+RD+KP N+L+ S G + + DF +S
Sbjct: 110 KGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGIS 147

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 86.6 bits (214), Expect = 9e-19
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 5/171 (2%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V++K         +A K+++K E++ R + +  R ER +L  
Sbjct: 2   DFEIIKVIGRGAFGEVAVVKMKHTER----IYAMKILNKWEMLKRAETACFREERNVLVN 57

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++ TL+       +  L+ ++  GGDL  L  +  D R  E   RFY +E+V+A+ 
Sbjct: 58  GDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFED-RLPEDMARFYIAEMVLAIH 116

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
            +H +  ++RD+KP+NVL+  +GHI L DF   LK +   +    V+  +P
Sbjct: 117 SIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTP 167

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D  F+  LG G  G V L + K         +A K++ K  ++  +      +E+ +L +
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDE----LYAIKILKKDVVIQDDDVECTMVEKRVLAL 56

Query: 143 LDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              P FL  L++          + E+  GGDL  + Q Q   RF E    FYA+E+ + L
Sbjct: 57  SGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYQIQQVGRFKEPHAVFYAAEIAIGL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            FLH  GIIYRDLK +NV++ S+GHI + DF +
Sbjct: 115 FFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LGSG  GSVY       + ++G FFA K +   +     +E+  ++E+EI  L  L HP 
Sbjct: 8   LGSGSFGSVYE----GLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN 63

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +     T        +  E  PGG L  L ++     F E  +R Y  ++++ LE+LH  
Sbjct: 64  IVQYLGTEREEDNLYIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDR 121

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             ++RD+K  N+LV ++G + L DF ++
Sbjct: 122 NTVHRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 12/164 (7%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILE 141
           L    +LG G  G VY   LK K        A K + +      +++      RE  I+ 
Sbjct: 1   LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKE----DASEQQIEEFLREARIMR 56

Query: 142 MLDHPFLPTLY--ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
            LDHP +  L    T + P    ++ E+ PGGDL   LR+ +P K    S +  +A ++ 
Sbjct: 57  KLDHPNIVKLLGVCTEEEPL--MIVMEYMPGGDLLDYLRKNRP-KELSLSDLLSFALQIA 113

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
             +E+L     I+RDL   N LV  +  + ++DF LS    +  
Sbjct: 114 RGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 157

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 73/352 (20%), Positives = 125/352 (35%), Gaps = 100/352 (28%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D   +  +G G    VY       +       A K +D    + + + S   + +E+  
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEK----VAIKRID----LEKCQTSVDELRKEVQA 52

Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGD-LHVLRQRQPDKRFHESAVRFYASEVV 198
           M   +HP +   Y +        L+  +  GG  L +++   P     E+ +     EV+
Sbjct: 53  MSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVL 112

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
             LE+LH  G I+RD+K  N+L+  DG + + D                           
Sbjct: 113 KGLEYLHSNGQIHRDIKAGNILLGEDGSVKIAD--------------------------- 145

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      FG S+ +              ++ RK                     +F
Sbjct: 146 -----------FGVSASLADGGDRT-------RKVRK---------------------TF 166

Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           VGT  ++APE++    G+    D W+ GI   EL  G  P+     +     V+   L+ 
Sbjct: 167 VGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPY----SKYPPMKVLMLTLQN 222

Query: 378 PKEPSVPGPA---------KDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
              PS+   A         + +I+  L KDP++R       TA +  +H+FF
Sbjct: 223 DP-PSLETGADYKKYSKSFRKMISLCLQKDPSKR------PTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 84.1 bits (208), Expect = 5e-18
 Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 15/140 (10%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
            V + +F GT +Y+APEI+    +G +VDWW LG+ ++E+  G  PF+  + +    +++
Sbjct: 150 GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESIL 209

Query: 372 ARALEFP----KEPSVPGPAKDLIAQLLVKDPTRRMG---SKMGATAIKRHQFFNGVNWA 424
              + +P    KE      A  ++   + K+P +R+G   S+ G  AIK+H FF  ++W 
Sbjct: 210 HDDVLYPVWLSKE------AVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWV 263

Query: 425 LL--RCAKPPFIPRPVTCRD 442
           LL  R  KPPF P+  T RD
Sbjct: 264 LLEQRKIKPPFKPKIKTKRD 283

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 82.7 bits (205), Expect = 9e-18
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--I 139
            DL ++  LG+G+ G V  V  +      G   A K +     +  N+  + +I RE  I
Sbjct: 1   DDLEYLGELGAGNSGVVSKVLHRP----TGKIMAVKTI----RLEINEAIQKQILRELDI 52

Query: 140 LEMLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           L   + P++   Y     +     C+  E+  GG L  +  ++   R  E  +   A  V
Sbjct: 53  LHKCNSPYIVGFYGAFYNNGDISICM--EYMDGGSLDKIL-KEVQGRIPERILGKIAVAV 109

Query: 198 VVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L +LH    II+RD+KP N+LV S G I L DF +S
Sbjct: 110 LKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVS 148

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 82.4 bits (203), Expect = 1e-17
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 12/153 (7%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG G  G VY    K+K+   G   AAKV++ +   S  +     +E EIL   +HP
Sbjct: 17  IGELGDGAFGKVY----KAKNKETGALAAAKVIETK---SEEELEDYMVEIEILATCNHP 69

Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++  L      D   W  ++ EFCPGG +  +   + D+   E  ++    +++ AL++L
Sbjct: 70  YIVKLLGAFYWDGKLW--IMIEFCPGGAVDAI-MLELDRGLTEPQIQVICRQMLEALQYL 126

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           H M II+RDLK  NVL+  DG I L DF +S K
Sbjct: 127 HSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAK 159

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP- 378
           GT+ Y+APEI+  E +   VDW+ +G  I+E+  G TPFK    ++    +  R LE   
Sbjct: 156 GTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEV 215

Query: 379 --KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCA--KPPFI 434
             +  +    +KD+    L K P  R+GS+      ++H+FF  +N+  L      PPF+
Sbjct: 216 KFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPRLEAGLIPPPFV 275

Query: 435 PR 436
           P 
Sbjct: 276 PD 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE+I+ E +  + DWW LG  I+E+  G +PF+     +    V  R  E  
Sbjct: 162 VGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQ 221

Query: 379 KEPS--VPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRC--AKPPF 433
           +E S      AK +   LL K+P  R+G +  GA  +K+H  F  +N+  L     +PPF
Sbjct: 222 EEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEPPF 281

Query: 434 IPRP 437
            P P
Sbjct: 282 CPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 83.1 bits (205), Expect = 2e-17
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 12/150 (8%)

Query: 313 VRSMSFVGTHEYLAPEIIS----GEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           V+S   VGT +Y++PEI+     G G +G   DWW+LG+ ++E+ YG TPF       T 
Sbjct: 158 VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETY 217

Query: 368 ANVV--ARALEFPKE-PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA 424
             ++      +FP     V   AKDLI Q L+    RR+G   G    K+H FF G++W 
Sbjct: 218 GKIMNHEERFQFPSHITDVSEEAKDLI-QRLICSRERRLGQN-GIEDFKKHAFFEGIDWE 275

Query: 425 LLRCAKPPFIPRPVTCRDLTTTNSSIDNSI 454
            +R  + P+IP   +  D  T+N  +D+ +
Sbjct: 276 NIRNLEAPYIPDVSSPSD--TSNFDVDDDV 303

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 81.7 bits (202), Expect = 2e-17
 Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G VY  Q K      G F AAK++    + S  +     +E +IL    HP + 
Sbjct: 13  LGDGAFGKVYKAQHK----ETGLFAAAKIIQ---IESEEELEDFMVEIDILSECKHPNIV 65

Query: 150 TLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
            LY     +   W  +L EFC GG L  +   + ++   E  +R+   +++ AL FLH  
Sbjct: 66  GLYEAYFYENKLW--ILIEFCDGGALDSIML-ELERGLTEPQIRYVCRQMLEALNFLHSH 122

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
            +I+RDLK  N+L+  DG + L DF +S K 
Sbjct: 123 KVIHRDLKAGNILLTLDGDVKLADFGVSAKN 153

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D  + S  GT  Y+APE++  +G+  AVDWW+LG+  +E   G  P++G  H  T+ + +
Sbjct: 153 DTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRG--HSRTIRDQI 210

Query: 372 ARALEFPKEPSVPGPAK---DLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               E          +    D I +LL +DP +R+G  +    +K H +F
Sbjct: 211 RAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNL--KDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 82.0 bits (202), Expect = 3e-17
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 16/152 (10%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KL + G  +    P D  S  F GT  Y+APEI+ GE +G +VDWW LG+ +FE+  G +
Sbjct: 136 KLTDYGMCKEGLRPGDTTST-FCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS 194

Query: 357 PFKGI---------DHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG--S 405
           PF  +           +     ++ + +  P+  SV   A  ++   L KDP  R+G   
Sbjct: 195 PFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSV--KAASVLKSFLNKDPKERLGCHP 252

Query: 406 KMGATAIKRHQFFNGVNWALLRCAK--PPFIP 435
           + G   I+ H FF  V+W L+   +  PPF P
Sbjct: 253 QTGFADIQGHPFFRNVDWDLMEQKQVVPPFKP 284

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 13/162 (8%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILE 141
           L    +LG G  G VY  +LK K        A K + +      +++      RE  I+ 
Sbjct: 1   LTLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKE----DASEQQIEEFLREARIMR 56

Query: 142 MLDHPFLPTLY--ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
            LDHP +  L    T + P    ++ E+  GGDL   LR+ +P  +   S +  +A ++ 
Sbjct: 57  KLDHPNVVKLLGVCTEEEPL--YIVMEYMEGGDLLSYLRKNRP--KLSLSDLLSFALQIA 112

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
             +E+L     I+RDL   N LV  +  + ++DF LS    +
Sbjct: 113 RGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD 154

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 80.1 bits (197), Expect = 9e-17
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE++  E +  + DWW LG  ++E+  G +PF+    ++    V     E  
Sbjct: 162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQ 221

Query: 379 KEPS--VPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCA--KPPF 433
           +E S      A+ L   LL KDP  R+G +  GA  +K H  F  +N+  L     +PPF
Sbjct: 222 EEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPPF 281

Query: 434 IPRP 437
            P P
Sbjct: 282 KPDP 285

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM- 142
           L    +LG G  G VY   LK          A K + K       +E       E   M 
Sbjct: 1   LELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTL-KEGASEEEREE---FLEEASIMK 56

Query: 143 -LDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
            L HP +  L    T   P    ++TE+ PGGDL   LR+     +     +   A ++ 
Sbjct: 57  KLSHPNIVRLLGVCTQGEP--LYIVTEYMPGGDLLDFLRKHGE--KLTLKDLLQMALQIA 112

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +E+L     ++RDL   N LV  +  + ++DF LS
Sbjct: 113 KGMEYLESKNFVHRDLAARNCLVTENLVVKISDFGLS 149

Length = 258

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 12/164 (7%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIIS----GEG-HGNAVDWWTLGIFIFEL 351
           +L + G+   + E   V+S   VGT +Y++PEI+     G+G +G   DWW+LG+ ++E+
Sbjct: 142 RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEM 201

Query: 352 FYGTTPFKGIDHELTLANVV--ARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMG 408
            YG TPF       T   ++      +FP + + V   AKDLI +L+      R+G   G
Sbjct: 202 LYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSR-EHRLGQN-G 259

Query: 409 ATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDN 452
               K+H FF G++W  +R  + P+IP   +  D  T+N  +D+
Sbjct: 260 IEDFKQHPFFTGIDWDNIRNCEAPYIPEVSSPTD--TSNFDVDD 301

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 79.7 bits (196), Expect = 3e-16
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + +   VR  + VGT +Y++PE++  +G    +G   DWW++G+F++E+ 
Sbjct: 182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241

Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP +  +   AK+LI   L  D   R+G + G  
Sbjct: 242 VGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVE 299

Query: 411 AIKRHQFFNGVNWAL--LRCAKPPFIPRPVTCRDLTTTN 447
            IKRH FF    WA   LR    P +P      D+ T+N
Sbjct: 300 EIKRHLFFKNDQWAWETLRDTVAPVVPD--LSSDIDTSN 336

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 78.9 bits (194), Expect = 6e-16
 Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 12/159 (7%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + E   VR  + VGT +Y++PE++  +G    +G   DWW++G+F+FE+ 
Sbjct: 182 KLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 241

Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP++  +   AK+LI   L  D   R+G + G  
Sbjct: 242 VGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLT-DREVRLG-RNGVE 299

Query: 411 AIKRHQFF--NGVNWALLRCAKPPFIPRPVTCRDLTTTN 447
            IK+H FF  +  NW  +R    P +P   +  D+ ++N
Sbjct: 300 EIKQHPFFKNDQWNWDNIRETAAPVVPELSS--DIDSSN 336

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  GSVY V+  S +     F+A K +D   +  + +E  A  E  IL  ++HP + 
Sbjct: 8   LGKGSYGSVYKVKRLSDNQ----FYALKEVDLGSMSQKERED-AVNEIRILASVNHPNII 62

Query: 150 TLY-ATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKR-FHESAVRFYASEVVVALEFLHM 206
           +   A LD  +  C++ E+ P GDL   + +R+  ++   E  +     +++  L+ LH 
Sbjct: 63  SYKEAFLDGNKL-CIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHE 121

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RDLK  N+L+ ++  + + D  +S
Sbjct: 122 QKILHRDLKSANILLVANDLVKIGDLGIS 150

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G  G VY  +LK K        A K + +      ++E R    +E  +++ L HP 
Sbjct: 3   LGEGAFGEVYKGKLKGKD-GKTTEVAVKTLKEDA----SEEERKDFLKEARVMKKLGHPN 57

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESA-------VRFYASEVVV 199
           +  L           L+ E+  GGDL   LR+ +P     E +       + F A ++  
Sbjct: 58  VVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSF-AIQIAK 116

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            +E+L     ++RDL   N LV  D  + ++DF LS    + 
Sbjct: 117 GMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD 158

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +G G  G VY    K  +   G F A K +    L    +E+   I +EI  L+ L HP 
Sbjct: 8   IGRGAFGVVY----KGLNLETGDFVAIKQI---SLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH---ESAVRFYASEVVVALEFL 204
           +     +++      ++ E+   G L     RQ  K+F    ES V  Y  +V+  L +L
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSL-----RQIIKKFGPFPESLVAVYVYQVLQGLAYL 115

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK-GDNSTSTAQLV 248
           H  G+I+RD+K  N+L   DG + L DF ++ K  D S   A +V
Sbjct: 116 HEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVV 160

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G  G V L +      N G   A K ++     S  ++ R+  EREI  L 
Sbjct: 6   LKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLN----HSGEEQHRSDFEREIEILR 61

Query: 142 MLDHPFLPTL--YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            LDH  +            R   L+ E+ P G L    QR  D+   +  + F +S++  
Sbjct: 62  TLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF-SSQICK 120

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++L     I+RDL   N+LV S+  + ++DF L+
Sbjct: 121 GMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLA 156

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 70/329 (21%), Positives = 127/329 (38%), Gaps = 101/329 (30%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +G G  G+VY    + K    G   A K+++    +    +  + I+RE+  L  L    
Sbjct: 9   IGRGAYGAVY----RGKHVPTGRVVALKIIN----LDTPDDDVSDIQREVALLSQLRQSQ 60

Query: 148 LP--TLY--ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            P  T Y  + L  PR   ++ E+  GG +  L +  P    + S +     EV+VAL++
Sbjct: 61  PPNITKYYGSYLKGPRL-WIIMEYAEGGSVRTLMKAGPIAEKYISVI---IREVLVALKY 116

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
           +H +G+I+RD+K  N+LV + G++ L DF ++         A L  + S           
Sbjct: 117 IHKVGVIHRDIKAANILVTNTGNVKLCDFGVA---------ALLNQNSS----------- 156

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP--GTPEIVAEPLDVRSMSFVGT 321
                                        +R   +G P    PE++ E            
Sbjct: 157 -----------------------------KRSTFVGTPYWMAPEVITE------------ 175

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
                     G+ +    D W+LGI I+E+  G  P+  +D       ++ ++    K P
Sbjct: 176 ----------GKYYDTKADIWSLGITIYEMATGNPPYSDVD-AFRAMMLIPKS----KPP 220

Query: 382 SVPGPA-----KDLIAQLLVKDPTRRMGS 405
            +         ++ +A  L ++P  R+ +
Sbjct: 221 RLEDNGYSKLLREFVAACLDEEPKERLSA 249

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 74.2 bits (182), Expect = 9e-15
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 13/126 (10%)

Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR---- 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+   H+    + + R    
Sbjct: 156 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ--HKTKDKHEIDRMTLT 213

Query: 374 -ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNW--ALLRCA 429
            A+E P   S     + L+  LL +D  RR+G    GA  +K H FF  ++W    L+  
Sbjct: 214 MAVELPDSFSP--ELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQKY 271

Query: 430 KPPFIP 435
            PP IP
Sbjct: 272 PPPLIP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   ++++G G  G V+ V  K+    +   +A K +D  ++  R +E     E  +L  
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKA----DKRVYAMKQIDLSKMNRREREEAID-EARVLAK 55

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAV-RFYASEVVVAL 201
           LD  ++   Y +        ++ E+   GDLH L + Q  +   E  V RF+  ++++ L
Sbjct: 56  LDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFI-QILLGL 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-LKGDNS 241
             LH   I++RD+K  N+ + +  ++ + D  ++ L  DN+
Sbjct: 115 AHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT 155

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 62  AIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK 121
           A+K+  SEG+      P  L   + + ++G G  G VY    K+     G   A K M  
Sbjct: 7   ALKDIVSEGD------PREL--YKNLEKIGEGASGEVY----KATDRATGKEVAIKKMR- 53

Query: 122 RELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQ 180
              + +  +     E  I++   HP +   Y +        ++ E+  GG L  ++ Q  
Sbjct: 54  ---LRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQN- 109

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
              R +E  + +   EV+  LE+LH   +I+RD+K +N+L+  DG + L DF
Sbjct: 110 -FVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           ++G G  G VY    K++    G   A K +  R   S      A  E ++L+ L+HP +
Sbjct: 6   KIGEGTYGVVY----KARDKLTGEIVAIKKIKLRFE-SEGIPKTALREIKLLKELNHPNI 60

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L           L+ EF       +++ RQ  +   ES ++ Y  +++  L F H  G
Sbjct: 61  IKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHSHG 118

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL--SLKGDNSTSTAQLVS 249
           I++RDLKPEN+L+ ++G + L DF L  S        T  +V+
Sbjct: 119 ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVT 161

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 21/156 (13%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE--SRARIEREI--LEM 142
           + ++G G  G VY    K+++   G   A K +     +   KE      I REI  L+ 
Sbjct: 4   IAQIGEGTYGQVY----KARNKKTGELVALKKIR----MENEKEGFPITAI-REIKLLQK 54

Query: 143 LDHPFLPTLYA-TLDCPRWSC-LLTEFCPGGDLHVLRQ--RQPDKRFHESAVRFYASEVV 198
           L HP +  L        + S  ++ E+      H L      P+ +F ES ++ Y  +++
Sbjct: 55  LRHPNIVRLKEIVTSKGKGSIYMVFEYMD----HDLTGLLDSPEVKFTESQIKCYMKQLL 110

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
             L++LH  GI++RD+K  N+L+ +DG + L DF L
Sbjct: 111 EGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGL 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           +G G  G VY    K++    G   A K+MD  E    ++E   + E  IL    +HP +
Sbjct: 14  IGEGTYGKVY----KARHKKTGQLVAIKIMDIIE----DEEEEIKEEYNILRKYSNHPNI 65

Query: 149 PTLY--------ATLDCPRWSCLLTEFCPGG---DLHVLRQRQPDKRFHESAVRFYASEV 197
            T Y           D   W  +  E C GG   DL V   R+  KR  E  + +   E 
Sbjct: 66  ATFYGAFIKKNPPGNDDQLWLVM--ELCGGGSVTDL-VKGLRKKGKRLKEEWIAYILRET 122

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L +LH   +I+RD+K +N+L+  +  + L DF +S
Sbjct: 123 LRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 11/125 (8%)

Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVAR 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+       HE+    +   
Sbjct: 156 VGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVN 215

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNW--ALLRCAK 430
            +E P   S     K L+  LL +D ++R+G    GA  +K H FF G++W    L+   
Sbjct: 216 -VELPD--SFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYLQKYP 272

Query: 431 PPFIP 435
           PP IP
Sbjct: 273 PPLIP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 22/161 (13%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE--REI----- 139
           +  +G G  G+VY    K++  N G F A K     ++     E    +   REI     
Sbjct: 4   LAEIGEGAYGTVY----KARDLNTGRFVALK-----KVRVPLSEEGIPLSTLREIALLKQ 54

Query: 140 LEMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           LE  +HP +  L      PR        L+ E     DL     + P        ++   
Sbjct: 55  LESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLM 113

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++  ++FLH   I++RDLKP+N+LV SDG + + DF L+
Sbjct: 114 RQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 32/176 (18%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE---SRARIERE-----IL 140
            +G G  G+V  V+ KS    +G     K +D   +  + K+   S   I RE     I+
Sbjct: 7   TIGKGSFGTVRKVRRKS----DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIV 62

Query: 141 EMLDHPFLP---TLYATLDCPRWSCLLTEFCPGGDLHVL--RQRQPDKRFHESAVRFYAS 195
              D        TLY          ++ E+C GGDL  L  + ++  K   E  +    +
Sbjct: 63  RYYDRIIDRSNQTLY----------IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILT 112

Query: 196 EVVVALEFLHM-----MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           ++++AL   H        +++RDLKP N+ + ++ ++ L DF L+    + +S A+
Sbjct: 113 QLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAK 168

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 21/167 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR-------IEREI--L 140
           +GSG  GSVYL      ++++G   A K   + EL S +  S+ R       + REI  L
Sbjct: 8   IGSGSFGSVYL----GMNASSGELMAVK---QVELPSVSASSKDRKRSMLDALAREIALL 60

Query: 141 EMLDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           + L H   +  L ++LD    +  L E+ PGG +  L        F E+ VR +  +++ 
Sbjct: 61  KELQHENIVQYLGSSLDADHLNIFL-EYVPGGSVAALLNNY--GAFEETLVRNFVRQILK 117

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD-NSTSTA 245
            L +LH  GII+RD+K  N+LV + G I ++DF +S K + NS ST 
Sbjct: 118 GLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTK 164

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 68.9 bits (168), Expect = 5e-13
 Identities = 55/162 (33%), Positives = 76/162 (46%), Gaps = 15/162 (9%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG G  G VY    K+++   G   AAKV+D +   S  +     +E +IL   DHP
Sbjct: 10  IGELGDGAFGKVY----KAQNKETGVLAAAKVIDTK---SEEELEDYMVEIDILASCDHP 62

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGG--DLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            +  L           +L EFC GG  D  +L   +P     E  +R    + + AL +L
Sbjct: 63  NIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTEPQIRVVCKQTLEALNYL 119

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           H   II+RDLK  N+L   DG I L DF +S K   +T T Q
Sbjct: 120 HENKIIHRDLKAGNILFTLDGDIKLADFGVSAK---NTRTIQ 158

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 14/136 (10%)

Query: 111 GCFFAAKVMDKRELVSRNKESRARIE--------REI--LEMLDHPFLPTLYATLDCPRW 160
           G  F AK  +  E V+  K +  R+E        REI  L+   HP++  L         
Sbjct: 14  GIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSG 73

Query: 161 SCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV 219
             L+ E+ P  DL  VLR    ++   E+ V+ Y   ++  + ++H  GI++RDLKP N+
Sbjct: 74  FVLVMEYMPS-DLSEVLRDE--ERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANL 130

Query: 220 LVRSDGHIMLTDFDLS 235
           L+ +DG + + DF L+
Sbjct: 131 LISADGVLKIADFGLA 146

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 68.3 bits (167), Expect = 7e-13
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA-------RIEREILEM 142
           +G G  G VYL    + +   G   A K ++    ++   +SR        R E E L+ 
Sbjct: 9   IGKGTYGRVYL----ALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKD 64

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDH  +           +  +  E+ PGG +    +     RF E  VRF+  +V+  L 
Sbjct: 65  LDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLA 122

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ 251
           +LH  GI++RDLK +N+LV +DG   ++DF +S K D+     Q +S Q
Sbjct: 123 YLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQ 171

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G +YL   K+KS +  C    K +D  ++  + KE+ ++ E  +L  + HP
Sbjct: 5   IKKIGEGSFGKIYLA--KAKSDSEHCVI--KEIDLTKMPVKEKEA-SKKEVILLAKMKHP 59

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + T +A+        ++ E+C GGDL     RQ    F E  +  +  ++ + L+ +H 
Sbjct: 60  NIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD 119

Query: 207 MGIIYRDLKPENVLVRSDGHIM-LTDFDLSLKGDNSTSTAQ 246
             I++RD+K +N+ +  +G +  L DF ++ + ++S   A 
Sbjct: 120 RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY 160

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            RLG G  G+VYLV+ K K+         K +   EL + N+  +A  E ++L  LDHP 
Sbjct: 6   QRLGKGSFGTVYLVKDK-KAVAEERLKVLKEIPVGEL-NPNETVQANQEAQLLSKLDHPA 63

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +   +A+       C++TE+C G DL   +   +   K   E+ V  +  ++++ + ++H
Sbjct: 64  IVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH 123

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I++RDLK +N+ ++++  + + DF +S
Sbjct: 124 QRRILHRDLKAKNIFLKNN-LLKIGDFGVS 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHP 146
           RLG G  GSV   +LK    N G  FA K +        N + + +I RE  I +    P
Sbjct: 8   RLGEGAGGSVTKCRLK----NTGMIFALKTI----TTDPNPDLQKQILRELEINKSCKSP 59

Query: 147 FLPTLYATLDCPRWSCL--LTEFCPGGDLHVL--RQRQPDKRFHESAVRFYASEVVVALE 202
           ++   Y        S +    E+C GG L  +  + ++   R  E  +   A  V+  L 
Sbjct: 60  YIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLS 119

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +LH   II+RD+KP N+L+   G + L DF +S
Sbjct: 120 YLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVS 152

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 19/152 (12%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
            +G G  G VY      K +N     A KV+D  E     ++    I++EI  L     P
Sbjct: 8   CIGKGSFGEVYKAI--DKRTNQVV--AIKVIDLEE----AEDEIEDIQQEIQFLSQCRSP 59

Query: 147 FLPTLYAT--LDCPRWSCLLTEFCPGGD-LHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
           ++   Y +       W  ++ E+C GG  L +L+      +  E+ + F   EV++ LE+
Sbjct: 60  YITKYYGSFLKGSKLW--IIMEYCGGGSCLDLLKPG----KLDETYIAFILREVLLGLEY 113

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           LH  G I+RD+K  N+L+  +G + L DF +S
Sbjct: 114 LHEEGKIHRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEML 143
            +  +G G  G V    LK ++   G   A K   + E    +++ +    RE+  L  L
Sbjct: 5   VLGVVGEGAYGVV----LKCRNKATGEIVAIKKFKESE---DDEDVKKTALREVKVLRQL 57

Query: 144 DHPFLPTLYATLDCPRWS---CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
            H  +  L    +  R      L+ E+     L +L +  P       AVR Y  +++ A
Sbjct: 58  RHENIVNL---KEAFRRKGRLYLVFEYVERTLLELL-EASP-GGLPPDAVRSYIWQLLQA 112

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           + + H   II+RD+KPEN+LV   G + L DF
Sbjct: 113 IAYCHSHNIIHRDIKPENILVSESGVLKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 19/158 (12%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   + R+GSG  G VY    K+++ N G   A KV+          E  A +++EI+ M
Sbjct: 10  DFELIQRIGSGTYGDVY----KARNVNTGELAAIKVIKLEP-----GEDFAVVQQEIIMM 60

Query: 143 LD--HPFLPTLYATL--DCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
            D  H  +   + +       W C+  EFC GG L  +     P     ES + + + E 
Sbjct: 61  KDCKHSNIVAYFGSYLRRDKLWICM--EFCGGGSLQDIYHVTGP---LSESQIAYVSRET 115

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L +LH  G ++RD+K  N+L+  +GH+ L DF +S
Sbjct: 116 LQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D+++   LG G+ G+VY    K+         A KV+     V   K+  +  E EIL  
Sbjct: 2   DIQYQEILGHGNGGTVY----KAYHLLTRRILAVKVIPLDITVELQKQIMS--ELEILYK 55

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D P++   Y          + TEF  GG L V R      +  E  +   A  VV  L 
Sbjct: 56  CDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLT 109

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           +L  + I++RD+KP N+LV + G + L DF +S +  NS + 
Sbjct: 110 YLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAK 151

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 21/112 (18%)

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-------L 367
             + VGT  ++APE+I+G+ +    D W+LGI   EL  G  P+     EL        +
Sbjct: 154 RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPY----SELPPMKALFKI 209

Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATA--IKRHQF 417
           A      L  P++ S     KD + + L K+P +R       TA  + +H F
Sbjct: 210 ATNGPPGLRNPEKWSD--EFKDFLKKCLQKNPEKR------PTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 63.7 bits (156), Expect = 3e-11
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 33/162 (20%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------- 136
           + +LG G  G VY    K++    G   A K +              R++          
Sbjct: 4   LEKLGEGTYGVVY----KARDKKTGEIVALKKI--------------RLDNEEEGIPSTA 45

Query: 137 -REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
            REI  L+ L HP +  L   +   R   L+ E+C   DL     ++P      + ++  
Sbjct: 46  LREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRP-GPLSPNLIKSI 103

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +++  L + H   I++RDLKP+N+L+  DG + L DF L+
Sbjct: 104 MYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 83/349 (23%), Positives = 132/349 (37%), Gaps = 107/349 (30%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S L    ++G G  G V +   KS     G   A K MD R+     ++ R  +  E++ 
Sbjct: 19  SYLDNFVKIGEGSTGIVCIATDKS----TGRQVAVKKMDLRK-----QQRRELLFNEVVI 69

Query: 142 MLD--HPFLPTLYAT--LDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASE 196
           M D  HP +  +Y++  +    W  ++ EF  GG L  ++       R +E  +      
Sbjct: 70  MRDYQHPNIVEMYSSYLVGDELW--VVMEFLEGGALTDIVTH----TRMNEEQIATVCLA 123

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTG 256
           V+ AL FLH  G+I+RD+K +++L+ SDG + L+DF            AQ+  +      
Sbjct: 124 VLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGF---------CAQVSKE------ 168

Query: 257 DQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP--GTPEIVAEPLDVR 314
                                    VP         RRK  +G P    PE+++      
Sbjct: 169 -------------------------VP---------RRKSLVGTPYWMAPEVISR----- 189

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
                               +G  VD W+LGI + E+  G  P+   +     A    R 
Sbjct: 190 ------------------LPYGTEVDIWSLGIMVIEMVDGEPPY--FNEPPLQAMKRIRD 229

Query: 375 LEFP--KEPSVPGPA-KDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
              P  K      P  +  + ++LV+DP +R      ATA +   H F 
Sbjct: 230 NLPPKLKNLHKVSPRLRSFLDRMLVRDPAQR------ATAAELLNHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           +LG G  GSVYL + K      G   A K M K++  S  +    R  + + ++ +HP +
Sbjct: 6   QLGDGTFGSVYLARNKE----TGELVAIKKM-KKKFYSWEECMNLREVKSLRKLNEHPNI 60

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L            + E+  G    +++ R+  K F ES +R    +++  L  +H  G
Sbjct: 61  VKLKEVFRENDELYFVFEYMEGNLYQLMKDRKG-KPFSESVIRSIIYQILQGLAHIHKHG 119

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +RDLKPEN+LV     + + DF L+
Sbjct: 120 FFHRDLKPENLLVSGPEVVKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--L 140
               + +LG G  GSVY    K+     G   A KV+         +E    I +EI  L
Sbjct: 4   VFDILEKLGEGSYGSVY----KAIHKETGQVVAIKVV-------PVEEDLQEIIKEISIL 52

Query: 141 EMLDHPFLPTLYATL--DCPRWSCLLTEFCPGG---DLHVLRQRQPDKRFHESAVRFYAS 195
           +  D P++   Y +   +   W  ++ E+C  G   D+  +      K   E  +     
Sbjct: 53  KQCDSPYIVKYYGSYFKNTDLW--IVMEYCGAGSVSDIMKITN----KTLTEEEIAAILY 106

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +  LE+LH    I+RD+K  N+L+  +G   L DF +S
Sbjct: 107 QTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCF-FAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
           +LG G  G V   + +  +S       A K + K + +S   +   + E  I+  LDH  
Sbjct: 2   KLGDGSFGVVR--RGEWSTSGGKVIPVAVKCL-KSDKLSDIMDDFLK-EAAIMHSLDHEN 57

Query: 148 LPTLYA-TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           L  LY   L  P    ++TE  P G L   LR+      F  S +  YA ++   + +L 
Sbjct: 58  LIRLYGVVLTHP--LMMVTELAPLGSLLDRLRKDALGH-FLISTLCDYAVQIANGMRYLE 114

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS----LKGDNSTSTAQL 247
               I+RDL   N+L+ SD  + + DF L        D+      L
Sbjct: 115 SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHL 160

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
             D   + R+GSG  G VY    K++    G   A KV+          +    I++EI 
Sbjct: 2   QEDYELIQRIGSGTYGDVY----KARDIATGELVAIKVIKLEP-----GDDFEIIQQEI- 51

Query: 141 EML---DHPFLPTLYAT--LDCPRWSCLLTEFCPGGDL----HVLRQRQPDKRFHESAVR 191
            ML    HP +   + +       W  +  E+C GG L     V R         E  + 
Sbjct: 52  SMLKECRHPNIVAYFGSYLRRDKLWIVM--EYCGGGSLQDIYQVTRGPLS-----ELQIA 104

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           +   E +  L +LH  G I+RD+K  N+L+  DG + L DF +S +   + +
Sbjct: 105 YVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA 156

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREILEMLDHPFL 148
           LG G  G   L +     S        K ++   L    KE R A  E  IL +L HP +
Sbjct: 8   LGKGAFGEATLYRRTEDDS----LVVWKEVNLTRLSE--KERRDALNEIVILSLLQHPNI 61

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              Y          +  E+  GG L+    RQ  + F E  V +Y  ++V A+ ++H  G
Sbjct: 62  IAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG 121

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
           I++RD+K  N+ +   G I L DF +S    +  S A+ V
Sbjct: 122 ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETV 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 14/159 (8%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           ++L  +  LGSG  G+VY      +        A KV+ +      NKE    I  E   
Sbjct: 7   TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKE----ILDEAYV 62

Query: 142 M--LDHPFLPTLYATLDCPRWS-CLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           M  +DHP +  L     C      L+T+  P G L  +V   R          +  +  +
Sbjct: 63  MASVDHPHVVRLLGI--CLSSQVQLITQLMPLGCLLDYV---RNHKDNIGSQYLLNWCVQ 117

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +   + +L    +++RDL   NVLV++  H+ +TDF L+
Sbjct: 118 IAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--I 139
            DL  +  LG+G+ GSV  V    K    G   A KV+     +      R +I RE  I
Sbjct: 5   EDLETISDLGAGNGGSVSKV----KHIPTGTVMAKKVV----HIGAKSSVRKQILRELQI 56

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
           +     P++ + Y         C+  EF   G L  + ++  P        +   A  VV
Sbjct: 57  MHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGP---IPVEILGKIAVAVV 113

Query: 199 VALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L +L+ +  I++RD+KP N+LV S G I L DF +S
Sbjct: 114 EGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVS 151

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 31/176 (17%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN--KESRARIEREILEM----- 142
           LGSG  G VY V+   K +N     A K ++          +E    I   + E+     
Sbjct: 8   LGSGAFGCVYKVR---KKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKE 64

Query: 143 -LDHP--------FLPT--LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVR 191
            L HP        FL    LY  +D       L E  P G+ H    ++  +RF E  + 
Sbjct: 65  QLRHPNIVRYYKTFLENDRLYIVMD-------LIEGAPLGE-HFNSLKEKKQRFTEERIW 116

Query: 192 FYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLS-LKGDNSTSTA 245
               ++V+AL +LH    I++RDL P N+++  D  + +TDF L+  K   S  T+
Sbjct: 117 NIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTS 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC-FFAAKVMDKRELVSRNKESRARIER 137
           + LS +RF+  LG G  G VY  +L   +        A K + +       +E R   E 
Sbjct: 2   IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQ--EA 59

Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH---VLRQRQPDKRFHESAVRFY- 193
           E++  L HP +  L       + +C+L E+   GDLH   V      D            
Sbjct: 60  ELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKS 119

Query: 194 ----------ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                     A ++   +E+L     ++RDL   N LV     + ++DF LS
Sbjct: 120 SLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 14/171 (8%)

Query: 66  ATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM-DKREL 124
           ++S  + +  +   +LS+L  V+R+GSG  G+VY V  +      G  +A KV+    E 
Sbjct: 58  SSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHRP----TGRLYALKVIYGNHED 113

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR 184
             R +  R   E EIL  ++HP +   +   D      +L EF  GG L           
Sbjct: 114 TVRRQICR---EIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHI------ 164

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             E  +   A +++  + +LH   I++RD+KP N+L+ S  ++ + DF +S
Sbjct: 165 ADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V ++G G  G   LV    KS  +G  +  K ++  ++  + +E  +R E  +L  + HP
Sbjct: 5   VKKIGEGSFGKAILV----KSKEDGKQYVIKEINISKMSPKERE-ESRKEVAVLSNMKHP 59

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +     + +      ++ ++C GGDL+     Q    F E  +  +  ++ +AL+ +H 
Sbjct: 60  NIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHD 119

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RD+K +N+ +  DG I L DF ++
Sbjct: 120 RKILHRDIKSQNIFLTKDGTIKLGDFGIA 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 59.1 bits (143), Expect = 8e-10
 Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 16/152 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR---ELVSRNKESRARIEREILEMLDHP 146
           +G G  G V+L + K+            V+ K+   E +++++   A+ E ++L++L HP
Sbjct: 8   VGRGAFGIVHLCRRKADQ--------KLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHP 59

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +   Y      +   ++ E+ PGG L    Q++ +    E  +  +  ++++AL  +H 
Sbjct: 60  NIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHT 119

Query: 207 MGIIYRDLKPENVLVRSDGHIM---LTDFDLS 235
             I++RDLK +N+L+  D H M   + DF +S
Sbjct: 120 KLILHRDLKTQNILL--DKHKMVVKIGDFGIS 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
              V  +G+G  G VY    K +    G   A KVMD    V+ ++E   ++E  +L+  
Sbjct: 18  FELVEVVGNGTYGQVY----KGRHVKTGQLAAIKVMD----VTEDEEEEIKLEINMLKKY 69

Query: 144 DH---------PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
            H          F+       D   W  L+ EFC  G +  L +        E  + +  
Sbjct: 70  SHHRNIATYYGAFIKKSPPGHDDQLW--LVMEFCGAGSVTDLVKNTKGNALKEDWIAYIC 127

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            E++  L  LH   +I+RD+K +NVL+  +  + L DF +S + D +
Sbjct: 128 REILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT 174

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 58.7 bits (143), Expect = 9e-10
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFK-GIDHELTLANVVAR-ALEF 377
           GT +Y +PE I G  +  + DWW +G+  +EL  G  PFK   D EL L +++ R   + 
Sbjct: 168 GTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKL 227

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
           P   +V   A D +  +L  +   R+ +      I +H F  
Sbjct: 228 PFIKNVSKNANDFVQSMLKYNINYRLTN---YNEIIKHPFLK 266

Length = 267

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + VGT  YL+PE+   + +    D W+LG  ++EL     PF+G ++ L LA  + +  +
Sbjct: 162 TVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEG-ENLLELALKILKG-Q 219

Query: 377 FPKEPSVPGPA-KDLIAQLLVKDPTRR 402
           +P  PS      ++L++ LL KDP  R
Sbjct: 220 YPPIPSQYSSELRNLVSSLLQKDPEER 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-----LANV 370
            +FVGT  Y+APE I G  +    D W+LG+ + EL  G  P+   +         L  +
Sbjct: 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYI 216

Query: 371 VARALEFPKEPS--VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN 422
           V      P+ PS       +D +   L+KDP  R   K     +  H F     
Sbjct: 217 VNE--PPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKE----LLEHPFIKKYE 264

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
           FV  +G G  G V LV+ ++        +  K ++ R    R +++ A  E ++L  L H
Sbjct: 4   FVRVVGKGSYGEVSLVRHRTDGKQ----YVIKKLNLRNASRRERKA-AEQEAQLLSQLKH 58

Query: 146 PFLPTLYATL---DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           P +     +    D   +  ++  FC GGDL+   + Q  K   E+ V  +  ++ +AL+
Sbjct: 59  PNIVAYRESWEGEDGLLY--IVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQ 116

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +LH   I++RDLK +NV +     I + D  ++
Sbjct: 117 YLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIA 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 20/142 (14%)

Query: 281 IVPAVSCLHPKRR---RKKKLGN-----PGTPEI-------VAEPLDVRSMSFVGTHEYL 325
           I+  +  LH KR    R  K  N      G  +I       V E    +  +FVGT  Y+
Sbjct: 108 ILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYM 167

Query: 326 APEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG 385
           +PE I GE +  A D W+LG+ + E   G  PF     + +   ++    + P       
Sbjct: 168 SPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPG-QPSFFELMQAICDGPPPSLPAE 226

Query: 386 PA----KDLIAQLLVKDPTRRM 403
                 +D I+  L KDP +R 
Sbjct: 227 EFSPEFRDFISACLQKDPKKRP 248

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
           +FVGT  ++APE+I   G+    D W+LGI   EL  G  P   +           R L 
Sbjct: 157 TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP--------MRVLF 208

Query: 376 EFPKE--PSVPG-----PAKDLIAQLLVKDPTRR 402
             PK   PS+ G     P KD ++  L KDP  R
Sbjct: 209 LIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKER 242

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV L +      N G   A K     +L     E     EREI  L+
Sbjct: 6   LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVK-----KLQHSTAEHLRDFEREIEILK 60

Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   +  YAS++  
Sbjct: 61  SLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLL-LYASQICK 119

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     ++RDL   N+LV S+  + + DF L+
Sbjct: 120 GMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLT 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 36/163 (22%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR----ELVSRNKESRARIEREIL 140
           + + ++G G    V    LK++S   G ++A K M K     E V+  +E +A      L
Sbjct: 2   KILGKIGEGTFSEV----LKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQA------L 51

Query: 141 EML-DHPFLPTLYATLDCPRWSCL----------LTEFCPGGDLHVLRQRQPDKRFHESA 189
             L  HP +  L   L   +   L          L E   G       +++P     E  
Sbjct: 52  RRLSPHPNILRLIEVLFDRKTGRLALVFELMDMNLYELIKG-------RKRP---LPEKR 101

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           V+ Y  +++ +L+ +H  GI +RD+KPEN+L++ D  + L DF
Sbjct: 102 VKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKDD-ILKLADF 143

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S VGT  ++APE+I   G   A D W+LG  + EL  G  P+    ++L     + R ++
Sbjct: 158 SVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPY----YDLNPMAALFRIVQ 213

Query: 377 FPKEPSVPG----PAKDLIAQLLVKDPTRRMGSK 406
               P +P       KD + Q   KDP  R  +K
Sbjct: 214 -DDHPPLPEGISPELKDFLMQCFQKDPNLRPTAK 246

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 30/159 (18%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-------NKESRARI-----ER 137
           LG G  G VYL           C+    V   REL  +       + E++  +     E 
Sbjct: 10  LGQGAFGRVYL-----------CY---DVDTGRELAVKQVPFDPDSPETKKEVNALECEI 55

Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASE 196
           ++L+ L H  +   Y  L       +  E+ PGG +   L+         E+  R Y  +
Sbjct: 56  QLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGA---LTETVTRKYTRQ 112

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++  +E+LH   I++RD+K  N+L  S G++ L DF  S
Sbjct: 113 ILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 91  GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--LDHPFL 148
              D+  V+L   K K +N         + K  L S +KE    +++EI+    L HP +
Sbjct: 9   CFEDLMIVHLA--KHKPTNT-----LVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNI 61

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
                +        +++     G    L +    +   E A+ F   +V+ AL+++H  G
Sbjct: 62  LPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKG 121

Query: 209 IIYRDLKPENVLVRSDGHIMLTDF 232
            I+R +K  ++L+  DG ++L+  
Sbjct: 122 FIHRSVKASHILLSGDGKVVLSGL 145

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 163 LLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL 220
           L+ +   GG L  H+ +         E  V+ +A+E+VVAL+ LH  GI+ RDL P N+L
Sbjct: 62  LVLQHAEGGKLWSHISKF----LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNIL 117

Query: 221 VRSDGHIMLTDF 232
           +   GHI LT F
Sbjct: 118 LDDRGHIQLTYF 129

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
              V  +G+G  G VY    K +    G   A KVMD    V+ ++E   + E  +L+  
Sbjct: 8   FELVELVGNGTYGQVY----KGRHVKTGQLAAIKVMD----VTGDEEEEIKQEINMLKKY 59

Query: 144 DH---------PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
            H          F+      +D   W  L+ EFC  G +  L +        E  + +  
Sbjct: 60  SHHRNIATYYGAFIKKNPPGMDDQLW--LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYIC 117

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            E++  L  LH   +I+RD+K +NVL+  +  + L DF +S + D +
Sbjct: 118 REILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT 164

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 32/135 (23%)

Query: 134 RIEREI--LEMLDHP--------FLP-------TLYATLDCPRWSCLLTEFCPGGDLH-V 175
           RI REI  L  L H           P        +Y          ++TE     DLH V
Sbjct: 45  RILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY----------IVTELMET-DLHKV 93

Query: 176 LRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++  QP     +  ++++  +++  L++LH   +I+RDLKP N+LV S+  + + DF L+
Sbjct: 94  IKSPQP---LTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLA 150

Query: 236 LKGDNSTSTAQLVSD 250
              D        +++
Sbjct: 151 RGVDPDEDEKGFLTE 165

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P  L+DL  +  +GSG  G VY ++ K          A K M +    + NKE   RI  
Sbjct: 11  PADLNDLENLGEIGSGTCGQVYKMRFKKTGH----VMAVKQMRR----TGNKEENKRILM 62

Query: 138 EILEML---DHPFLPTLYATL--DCPRWSCL-LTEFCPGGDLHVLRQRQPDKRFHESAVR 191
           ++  +L   D P++   Y     D   + C+ L   C   D  + R + P     E  + 
Sbjct: 63  DLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMSTC--LDKLLKRIQGP---IPEDILG 117

Query: 192 FYASEVVVALEFL---HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                +V AL +L   H  G+I+RD+KP N+L+ + G++ L DF +S
Sbjct: 118 KMTVAIVKALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 63/247 (25%), Positives = 92/247 (37%), Gaps = 85/247 (34%)

Query: 166 EFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
           E  PGG L  +LR +    + +E  + FY  +++  L++LH   I++RD+          
Sbjct: 85  EQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDI---------- 134

Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
                       KGDN      LV+  S   G  + +D       FG S           
Sbjct: 135 ------------KGDNV-----LVNTYS---GVVKISD-------FGTS----------- 156

Query: 285 VSCLHPKRRRKKKLG--NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVD 340
                      K+L   NP T             +F GT +Y+APE+I     G+G   D
Sbjct: 157 -----------KRLAGINPCTE------------TFTGTLQYMAPEVIDKGPRGYGAPAD 193

Query: 341 WWTLGIFIFELFYGTTPFKGIDHELTLANVVA-RALEFPKEPSVP----GPAKDLIAQLL 395
            W+LG  I E+  G  PF     EL        +   F   P +P      AK+ I +  
Sbjct: 194 IWSLGCTIVEMATGKPPF----IELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCF 249

Query: 396 VKDPTRR 402
             DP +R
Sbjct: 250 EPDPDKR 256

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF-------KGIDHELTLAN 369
           +FVGT  Y++PE I G  +    D W+LGI I EL  G  PF        G D  + + +
Sbjct: 161 TFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILD 220

Query: 370 VVARAL--EFPKEPS--VPGPAKDLIAQLLVKDPTRR 402
           ++ + +    P+ PS   P   +D +   L+KDPT R
Sbjct: 221 LLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTER 257

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 19/102 (18%)

Query: 324 YLAPEI--ISGEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVARALEF 377
           Y APE+  IS E    A DWW+LG  +FEL  G T  +    GI+   T        L  
Sbjct: 148 YCAPEVGGISEETE--ACDWWSLGAILFELLTGKTLVECHPSGINTHTT--------LNI 197

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKM-GATAIKRHQFF 418
           P+   V   A+ L+ QLL  +PT R+G+ + G   IK H FF
Sbjct: 198 PE--WVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 10/150 (6%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
           ++G G    VY    K+    +G   A K +   E++  + ++R    +EI  L+ LDHP
Sbjct: 9   KIGKGQFSVVY----KAICLLDGRVVALKKVQIFEMM--DAKARQDCLKEIDLLKQLDHP 62

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKR-FHESAVRFYASEVVVALEFL 204
            +    A+        ++ E    GDL  +++  +  KR   E  +  Y  ++  ALE +
Sbjct: 63  NVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHM 122

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           H   I++RD+KP NV + + G + L D  L
Sbjct: 123 HSKRIMHRDIKPANVFITATGVVKLGDLGL 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 82/359 (22%), Positives = 126/359 (35%), Gaps = 119/359 (33%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-----KRELVSRNKESRARIEREILE 141
             ++G G  G+VY     +     G   A K M+     K+EL          I  EIL 
Sbjct: 24  FEKIGQGASGTVYT----AIDVATGQEVAIKQMNLQQQPKKEL----------IINEILV 69

Query: 142 M--LDHP-FLPTLYATLDCPR-WSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASE 196
           M    HP  +  L + L     W  ++ E+  GG L  V+ +   D    E  +     E
Sbjct: 70  MRENKHPNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRE 123

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTG 256
            + ALEFLH   +I+RD+K +N+L+  DG + LTDF            AQ+  +QS    
Sbjct: 124 CLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF---------CAQITPEQS---- 170

Query: 257 DQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP--GTPEIVAEPLDVR 314
                                               +R   +G P    PE+V       
Sbjct: 171 ------------------------------------KRSTMVGTPYWMAPEVVTR----- 189

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR- 373
                             + +G  VD W+LGI   E+  G  P+   ++ L    ++A  
Sbjct: 190 ------------------KAYGPKVDIWSLGIMAIEMVEGEPPYLN-ENPLRALYLIATN 230

Query: 374 -ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKP 431
              E      +    +D + + L  D  +R      A  + +H F        L+ AKP
Sbjct: 231 GTPELQNPEKLSAIFRDFLNRCLEMDVEKR----GSAKELLQHPF--------LKIAKP 277

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
             LG G+ GSV       KS       A K + +  + +  KE     E  ++  LDHP 
Sbjct: 1   KELGHGNFGSVVKGVYLMKS-GKEVEVAVKTLKQEHIAAGKKEFLR--EASVMAQLDHPC 57

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +  L           L+ E  P G L    +++ +     S ++  A +V + + +L   
Sbjct: 58  IVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRRE--IPVSDLKELAHQVAMGMAYLESK 114

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             ++RDL   NVL+ +     ++DF +S
Sbjct: 115 HFVHRDLAARNVLLVNRHQAKISDFGMS 142

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 31/189 (16%)

Query: 77  NPLTLSDLRFVHRLGSGDIGSVYLVQLKS------KSSNNGCFFAAKVMDKRELVSRNKE 130
           NP   S+L F+  LGSG  G V+L + ++      K+ N G       ++          
Sbjct: 2   NP---SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIE---------- 48

Query: 131 SRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESA 189
                E +++  L HP L  LY      +   ++TEF   G L + LRQRQ   +  +  
Sbjct: 49  -----EAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQ--GKLSKDM 101

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDN--STSTA 245
           +     +V   +E+L     I+RDL   N LV S G + ++DF ++  +  D   S+S A
Sbjct: 102 LLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGA 161

Query: 246 QLVSDQSPP 254
           +     SPP
Sbjct: 162 KFPVKWSPP 170

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           M D+P    LY ++   +   L+ ++   GDL  L ++  + +  E+ V+    ++V AL
Sbjct: 65  MKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKK--EGKLSEAEVKKIIRQLVEAL 122

Query: 202 EFLHMMGIIYRDLKPENVL-VRSDGHIMLTDFDLS 235
             LH   II+ D+K ENVL  R+   I L D+ L 
Sbjct: 123 NDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLC 157

Length = 267

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G   LVQ  +        +A K  + R   S +    +R E  +L  + HP + 
Sbjct: 8   VGEGSFGRALLVQHVNSDQK----YAMK--EIRLPKSSSAVEDSRKEAVLLAKMKHPNIV 61

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
               + +      ++ E+C GGDL    + Q  K F E  +  +  ++ + ++ +H   +
Sbjct: 62  AFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRV 121

Query: 210 IYRDLKPENVLVRSDGHIMLTDF 232
           ++RD+K +N+ +  +G + L DF
Sbjct: 122 LHRDIKSKNIFLTQNGKVKLGDF 144

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 137 REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           REI  L+ L HP L  L       R   L+ E+C    L+ L +    +   E  ++   
Sbjct: 49  REIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNP--RGVPEHLIKKII 106

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            + + A+ F H    I+RD+KPEN+L+   G I L DF
Sbjct: 107 WQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 53.5 bits (128), Expect = 7e-08
 Identities = 81/369 (21%), Positives = 137/369 (37%), Gaps = 111/369 (30%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V + + K    ++G   A K+MD R+     ++ R  +  E++ M D  H 
Sbjct: 28  KIGEGSTGIVCIAREK----HSGRQVAVKMMDLRK-----QQRRELLFNEVVIMRDYQHQ 78

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
            +  +Y +        +L EF  GG L  ++ Q     R +E  +      V+ AL +LH
Sbjct: 79  NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLH 134

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAV 265
             G+I+RD+K +++L+  DG + L+DF            AQ+  D               
Sbjct: 135 SQGVIHRDIKSDSILLTLDGRVKLSDFGF---------CAQISKD--------------- 170

Query: 266 DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP--GTPEIVAEPLDVRSMSFVGTHE 323
                           VP         +RK  +G P    PE+++               
Sbjct: 171 ----------------VP---------KRKSLVGTPYWMAPEVISRTP------------ 193

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP----K 379
                      +G  VD W+LGI + E+  G  P+       +    + R  + P    K
Sbjct: 194 -----------YGTEVDIWSLGIMVIEMVDGEPPY----FSDSPVQAMKRLRDSPPPKLK 238

Query: 380 EPSVPGPA-KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPP-FIPRP 437
                 P  +D + ++L ++P  R      A  +  H F       LL+   P   +P  
Sbjct: 239 NAHKISPVLRDFLERMLTREPQER----ATAQELLDHPF-------LLQTGLPECLVPLI 287

Query: 438 VTCRDLTTT 446
              R  T+T
Sbjct: 288 QQYRKRTST 296

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 53.5 bits (128), Expect = 8e-08
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + +LG G   +VY    K KS  NG   A KV+  +E         A  E  +L+ L H 
Sbjct: 10  LEKLGEGSYATVY----KGKSKVNGKLVALKVIRLQE--EEGTPFTAIREASLLKGLKHA 63

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  L+  +       L+ E+    DL     + P    H   V+ +  +++  L ++H 
Sbjct: 64  NIVLLHDIIHTKETLTLVFEYV-HTDLCQYMDKHPGG-LHPENVKLFLFQLLRGLSYIHQ 121

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RDLKP+N+L+   G + L DF L+
Sbjct: 122 RYILHRDLKPQNLLISDTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK--ESRARIEREILEMLD 144
           + ++G G  G VY    K ++   G   A   M K  L S  +   S A  E  +L+ L 
Sbjct: 5   IEKIGEGTYGVVY----KGRNKKTGQIVA---MKKIRLESEEEGVPSTAIREISLLKELQ 57

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  L   L       L+ EF        L      +      V+ Y  +++  + F 
Sbjct: 58  HPNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFC 117

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H   +++RDLKP+N+L+ + G I L DF L+
Sbjct: 118 HSRRVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 24/158 (15%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L+ L+HP
Sbjct: 5   VEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLLKELNHP 59

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VRFYASEV 197
            +  L   +       L+ EF     LH     Q  K+F +++         ++ Y  ++
Sbjct: 60  NIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASPLSGIPLPLIKSYLFQL 109

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 110 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 57/264 (21%), Positives = 93/264 (35%), Gaps = 85/264 (32%)

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           E  +     E + ALEFLH   +I+RD+K +N+L+  DG + LTDF            AQ
Sbjct: 115 EGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF---------CAQ 165

Query: 247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI 306
           +  +QS                                        +R   +G P     
Sbjct: 166 ITPEQS----------------------------------------KRSTMVGTP----- 180

Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
                            ++APE+++ + +G  VD W+LGI   E+  G  P+   +    
Sbjct: 181 ----------------YWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA 224

Query: 367 LANVVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL 425
           L  +      E      +    +D + + L  D  +R  +K     + +HQF        
Sbjct: 225 LYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAK----ELLQHQF-------- 272

Query: 426 LRCAKP--PFIPRPVTCRDLTTTN 447
           L+ AKP     P     ++ T  N
Sbjct: 273 LKIAKPLSSLTPLIAAAKEATKNN 296

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 317 SFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           SF G+  ++APE+I    G+G A D W+LG  + E+  G  P+     +L     V +  
Sbjct: 160 SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPW----SQLEGVAAVFKIG 215

Query: 376 EFPKEPSVP----GPAKDLIAQLLVKDPTRR 402
              + P +P      AKD I + L +DP+ R
Sbjct: 216 RSKELPPIPDHLSDEAKDFILKCLQRDPSLR 246

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 37/133 (27%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF--------------KGID 362
           S VGT  ++APE+I  + +G  VD W+LGI   E+  G  P+              KGI 
Sbjct: 175 SVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGI- 233

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN 422
             L      +               KD + + LVKDP +R  ++     + +H F     
Sbjct: 234 PPLKNPEKWSPEF------------KDFLNKCLVKDPEKRPSAEE----LLQHPFLK--- 274

Query: 423 WALLRCAKPPFIP 435
                C K  F P
Sbjct: 275 ---KACPKEEFAP 284

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF--KGIDH----ELTLA 368
           + +F GT  Y+APE I G+ +    D W+LG+ + E+     PF  +G       EL   
Sbjct: 160 AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSY 219

Query: 369 NVVARALEFPKEPSVP----GPAKDLIAQLLVKDPTRRMGSK 406
            V     E   EP          KD I Q L KDPTRR    
Sbjct: 220 IVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPW 261

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 82/335 (24%), Positives = 130/335 (38%), Gaps = 100/335 (29%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LGSG  G+V    L +K  ++G  FA KV+D  E +S   ++RA+ E   L   D     
Sbjct: 40  LGSGATGTV----LCAKRVSDGEPFAVKVVD-MEGMSEADKNRAQAEVCCLLNCDF---- 90

Query: 150 TLYATLDC--------PR------WSCLLTEFCPGGDL-HVLRQRQPDKRF---HESAVR 191
             ++ + C        PR         L+ ++   GDL   ++ R    R    HE+ + 
Sbjct: 91  --FSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLL 148

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ 251
           F   +V++A+  +H   +I+RD+K  N+L+ S+G + L DF        S   A  VSD 
Sbjct: 149 FI--QVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGF------SKMYAATVSDD 200

Query: 252 SPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL 311
                              G + C                          GTP  VA   
Sbjct: 201 ------------------VGRTFC--------------------------GTPYYVA--- 213

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
                          PEI   + +    D ++LG+ ++EL     PF G + E  +   +
Sbjct: 214 ---------------PEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTL 258

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
           A   + P  PS+    ++++  LL  DP RR  S 
Sbjct: 259 AGRYD-PLPPSISPEMQEIVTALLSSDPKRRPSSS 292

Length = 496

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 170 GGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
             DLH ++   QP     E  +R++  +++  L+++H   +I+RDLKP N+LV  D  + 
Sbjct: 91  ESDLHHIIHSDQP---LTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELR 147

Query: 229 LTDF 232
           + DF
Sbjct: 148 IGDF 151

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLH + +    +  H    R+   +++ AL+++H   +I+RDLKP N+L+ SD  + L D
Sbjct: 94  DLHAVIRANILEDVH---KRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLAD 150

Query: 232 FDLS 235
           F L+
Sbjct: 151 FGLA 154

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 18/159 (11%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA-RIEREI-----L 140
           V  +G G  G+VY    K++  ++G F A K +     V  N++       RE+     L
Sbjct: 5   VAEIGVGAYGTVY----KARDPHSGHFVALKSVR----VQTNEDGLPLSTVREVALLKRL 56

Query: 141 EMLDHPFLPTLY---ATLDCPRWSCLLTEF-CPGGDLHVLRQRQPDKRFHESAVRFYASE 196
           E  DHP +  L    AT    R + +   F     DL     + P        ++    +
Sbjct: 57  EAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQ 116

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +  L+FLH   I++RDLKPEN+LV S G + L DF L+
Sbjct: 117 FLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR---IERE 138
            ++  +  LG G+ GSVY V  +              M  +E+     ES+     +E +
Sbjct: 1   DEIEVLDELGKGNYGSVYKVLHRP---------TGVTMAMKEIRLELDESKFNQIIMELD 51

Query: 139 ILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYAS 195
           IL     P++   Y    ++   + C+  E+   G L  L       +   E  +R    
Sbjct: 52  ILHKAVSPYIVDFYGAFFIEGAVYMCM--EYMDAGSLDKLYAGGVATEGIPEDVLRRITY 109

Query: 196 EVVVALEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            VV  L+FL     II+RD+KP NVLV  +G + L DF +S
Sbjct: 110 AVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L++ R   ++G G    VY    ++    +G   A K +   +L+     +    E ++L
Sbjct: 1   LANFRIEKKIGRGQFSEVY----RATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL 56

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRF-HESAVRFYASEVV 198
           + L+HP +   YA+        ++ E    GDL  +++  +  KR   E  V  Y  ++ 
Sbjct: 57  KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLC 116

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            ALE +H   +++RD+KP NV + + G + L D  L     + T+ A 
Sbjct: 117 SALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH 164

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + +      G +  A  M K   +S   E     E +++  
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWR------GQYDVAIKMIKEGSMS---EDEFIEEAKVMMK 55

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G L + LR+    KRF  S +     +V   +
Sbjct: 56  LSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHG--KRFQPSQLLEMCKDVCEGM 113

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I+RDL   N LV   G + ++DF LS
Sbjct: 114 AYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 27/165 (16%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LE 141
           DL  +  LG G  G V     K +    G   A K +  R  V+  ++ R  ++ +I + 
Sbjct: 2   DLEVIEELGRGAYGVVD----KMRHVPTGTIMAVKRI--RATVNSQEQKRLLMDLDISMR 55

Query: 142 MLDHPFLPTLYATL----DCPRWSCL------LTEFCPGGDLHVLRQRQPDKRFHESAVR 191
            +D P+  T Y  L    D   W C+      L +F       V           E  + 
Sbjct: 56  SVDCPYTVTFYGALFREGDV--WICMEVMDTSLDKFYK----KVY---DKGLTIPEDILG 106

Query: 192 FYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             A  +V ALE+LH  + +I+RD+KP NVL+  +G + L DF +S
Sbjct: 107 KIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGIS 151

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +G G  G V    +K K    G   A K   + E    +K  +    REI  L+ L H  
Sbjct: 9   VGEGSYGMV----MKCKHKETGQIVAIKKFLESE---DDKMVKKIAMREIRMLKQLRHEN 61

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLR--QRQPDKRFHESAVRFYASEVVVALEFLH 205
           L  L       +   L+ EF    D  VL   ++ P+    ES VR Y  +++  +EF H
Sbjct: 62  LVNLIEVFRRKKRLYLVFEFV---DHTVLDDLEKYPNG-LDESRVRKYLFQILRGIEFCH 117

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDF 232
              II+RD+KPEN+LV   G + L DF
Sbjct: 118 SHNIIHRDIKPENILVSQSGVVKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L F+  LGSG  G V+L + + K        A K++ +  +     E     E +++ 
Sbjct: 4   SELTFLKELGSGQFGVVHLGKWRGKID-----VAIKMIREGAM----SEDDFIEEAKVMM 54

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
            L HP L  LY      R   ++TE+   G L + LR+R+   +     +    S+V  A
Sbjct: 55  KLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERK--GKLGTEWLLDMCSDVCEA 112

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +E+L   G I+RDL   N LV  D  + ++DF L+
Sbjct: 113 MEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +   K    + G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 29  KIGEGSTGIVCIATEK----HTGKQVAVKKMDLRK-----QQRRELLFNEVVIMRDYHHE 79

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL +LH 
Sbjct: 80  NVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHN 136

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+ SDG I L+DF
Sbjct: 137 QGVIHRDIKSDSILLTSDGRIKLSDF 162

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
           LDV S SF GT  YLAPE+   + +    D W+LG+ ++EL     PFKG      +  V
Sbjct: 225 LDVAS-SFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQV 283

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           +    + P    V    K L+  LL K+P  R
Sbjct: 284 LYGKYD-PFPCPVSSGMKALLDPLLSKNPALR 314

Length = 478

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   + R+GSG  G VY    K+++ + G   A K++          +  + I++EI  +
Sbjct: 10  DYELIQRVGSGTYGDVY----KARNLHTGELAAVKIIKLEP-----GDDFSLIQQEIFMV 60

Query: 143 LD--HPFLPTLYATLDCPR--WSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
            +  H  +   + +       W C+  E+C GG L  +     P     E  + +   E 
Sbjct: 61  KECKHCNIVAYFGSYLSREKLWICM--EYCGGGSLQDIYHVTGP---LSELQIAYVCRET 115

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           +  L +LH  G ++RD+K  N+L+  +G + L DF ++ K
Sbjct: 116 LQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAK 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 20/154 (12%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKV--MDKRELVSRNKESRARIEREILEMLDHP 146
           +LG G   +VY    K ++   G   A K   +D  E       S A  E  +++ L H 
Sbjct: 7   KLGEGTYATVY----KGRNRTTGEIVALKEIHLDAEE----GTPSTAIREISLMKELKHE 58

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-----VRFYASEVVVAL 201
            +  L+  +       L+ E+    DL    ++  D      A     V+ +  +++  +
Sbjct: 59  NIVRLHDVIHTENKLMLVFEYMDK-DL----KKYMDTHGVRGALDPNTVKSFTYQLLKGI 113

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            F H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 114 AFCHENRVLHRDLKPQNLLINKRGELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA-RIEREI-----L 140
           V  +G G  G V+    K++   NG  F A    KR  V   +E       RE+     L
Sbjct: 6   VAEIGEGAYGKVF----KARDLKNGGRFVAL---KRVRVQTGEEGMPLSTIREVAVLRHL 58

Query: 141 EMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  +HP +  L+      R        L+ E     DL     + P+       ++    
Sbjct: 59  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMF 117

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  L+FLH   +++RDLKP+N+LV S G I L DF L+
Sbjct: 118 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAK-VMDKRELVSRNKESRARIEREI--LEMLDHP 146
           LG+G   S Y  +        G   A K V   R   S  +E    + +EI  +  L+HP
Sbjct: 8   LGTGAFSSCYQAR----DVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHP 63

Query: 147 FLPTLY-ATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            +  +  AT +   ++ L  E+  GG + H+L +      F E+ +  Y  +++  L +L
Sbjct: 64  HIIRMLGATCEDSHFN-LFVEWMAGGSVSHLLSKYGA---FKEAVIINYTEQLLRGLSYL 119

Query: 205 HMMGIIYRDLKPENVLVRSDGHIM-LTDF 232
           H   II+RD+K  N+L+ S G  + + DF
Sbjct: 120 HENQIIHRDVKGANLLIDSTGQRLRIADF 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G+ G V+   LK K+          V   +E + +  + +   E  IL+  DHP + 
Sbjct: 3   LGKGNFGEVFKGTLKDKTP-------VAVKTCKEDLPQELKIKFLSEARILKQYDHPNIV 55

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L       +   ++ E  PGGD     +++ D+   +  V+F A +    + +L     
Sbjct: 56  KLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKF-ALDAAAGMAYLESKNC 114

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
           I+RDL   N LV  +  + ++DF +S + D+
Sbjct: 115 IHRDLAARNCLVGENNVLKISDFGMSRQEDD 145

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 297 KLGNPGTPEIVAEPLDVRSM---SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY 353
           KLG+ G    +A+ L   S    ++VGT  Y++PE ++   +    D W+LG  I+EL  
Sbjct: 150 KLGDFG----LAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCA 205

Query: 354 GTTPFKGIDHELTLANVVARALEFPKEPSVPGPA-KDLIAQLLVKDPTRR 402
            + PF   +  L LA+ +    +F + P        ++I  +L  DP +R
Sbjct: 206 LSPPFTARNQ-LQLASKIKEG-KFRRIPYRYSSELNEVIKSMLNVDPDKR 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  +KS    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 27  KIGEGSTGIVCIATVKS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 77

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 78  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHA 134

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 135 QGVIHRDIKSDSILLTHDGRVKLSDF 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 24/167 (14%)

Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P    +L  V   GSG  G V      +  +  G   A K +  R   S     R   E 
Sbjct: 14  PDRYQNLSPV---GSGAYGQV----CSAFDTKTGRKVAIKKLS-RPFQSAIHAKRTYREL 65

Query: 138 EILEMLDHP--------FLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHES 188
            +L+ +DH         F P   ++L+  +   L+T    G DL+ +++     ++  + 
Sbjct: 66  RLLKHMDHENVIGLLDVFTPA--SSLEDFQDVYLVTHLM-GADLNNIVKC----QKLSDD 118

Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++F   +++  L+++H  GII+RDLKP N+ V  D  + + DF L+
Sbjct: 119 HIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLA 165

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K          A K +  +E     +E     E  +++
Sbjct: 6   TDITMKHKLGGGQYGEVYEGVWK----KYSLTVAVKTL--KEDTMEVEEFLK--EAAVMK 57

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY-ASEVV 198
            + HP L  L    T + P +  ++TEF   G+L +   R+ +++   + V  Y A+++ 
Sbjct: 58  EIKHPNLVQLLGVCTREPPFY--IITEFMTYGNL-LDYLRECNRQEVNAVVLLYMATQIS 114

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
            A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 115 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 163

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)

Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGC-------FFAAKVMDKRELVSRNKESRARIERE 138
            +  LG G  G V   +    S             F+ K++ KR L            RE
Sbjct: 4   LIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRAL------------RE 51

Query: 139 ILEML---DHPFLPTLYATLDCPRWSCL----LTEFCPGGDLH-VLRQRQPDKRFHESAV 190
           +  +     H  +  LY  +D           L E     DLH ++R  QP    H    
Sbjct: 52  LKLLRHFRGHKNITCLY-DMDIVFPGNFNELYLYEELMEADLHQIIRSGQPLTDAH---F 107

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +  +++  L+++H   +++RDLKP N+LV +D  + + DF L+
Sbjct: 108 QSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLA 152

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KLG+ G    + + +++ + + VGT  YL+PEI     + N  D W+LG  ++EL     
Sbjct: 142 KLGDFGIARQLNDSMEL-AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKH 200

Query: 357 PFKGID-HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           PF+G + H+L L   + +    P  P+     + LI+QL    P  R
Sbjct: 201 PFEGNNLHQLVLK--ICQGYFAPISPNFSRDLRSLISQLFKVSPRDR 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S  GT  +++PE+ISGEG+G   D W++G  + E+     P+   +    +  +  +   
Sbjct: 166 SVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTN 225

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
                 V   A++ + +  V++  +R      A  + RH F 
Sbjct: 226 PQLPSHVSPDARNFLRRTFVENAKKR----PSAEELLRHFFV 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DH 145
           +  +G G  G VY V  K     +G   A K++D    V    E+    E  IL+ L +H
Sbjct: 27  IETIGKGTYGKVYKVTNK----KDGSLAAVKILDPISDVDEEIEA----EYNILQSLPNH 78

Query: 146 P----FLPTLYATLDC---PRWSCLLTEFCPGGDLHVLRQ--RQPDKRFHESAVRFYASE 196
           P    F    Y          W  L+ E C GG +  L +      +R  E+ + +    
Sbjct: 79  PNVVKFYGMFYKADKLVGGQLW--LVLELCNGGSVTELVKGLLICGQRLDEAMISYILYG 136

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ L+ LH   II+RD+K  N+L+ ++G + L DF +S
Sbjct: 137 ALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 137 REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           REI  L+ L HP +  L           L+ EF    DL  +  +        + ++ Y 
Sbjct: 51  REIKLLQELKHPNIIGLLDVFGHKSNINLVFEFMET-DLEKV-IKDKSIVLTPADIKSYM 108

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              +  LE+LH   I++RDLKP N+L+ SDG + L DF L+
Sbjct: 109 LMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 5/101 (4%)

Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYA 194
           E ++L+ L H  + +L      P           G DLH L   +P +K+F    ++++ 
Sbjct: 59  ELKLLKHLRHENIISLSDIFISPLEDIYFVTELLGTDLHRLLTSRPLEKQF----IQYFL 114

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++  L+++H  G+++RDLKP N+L+  +  + + DF L+
Sbjct: 115 YQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLA 155

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 19/96 (19%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
           + +GT  ++APE+I   G+ N  D W+LGI   E+  G  P+  I H +       RA+ 
Sbjct: 158 TVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI-HPM-------RAIF 209

Query: 376 EFPKEPSVPG---PAK------DLIAQLLVKDPTRR 402
             P +P  P    P K      D + + LVKDP  R
Sbjct: 210 MIPNKPP-PTLSDPEKWSPEFNDFVKKCLVKDPEER 244

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 136 EREILEMLDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           E  I+   DHP +  L   + + P W  ++ E  P G+L    Q         S +  Y+
Sbjct: 57  EAYIMRQFDHPHIVKLIGVITENPVW--IVMELAPLGELRSYLQVNKYSLDLASLI-LYS 113

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++  AL +L     ++RD+   NVLV S   + L DF LS
Sbjct: 114 YQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLS 154

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARAL 375
           S VGT  Y++PE I   G+    D W+LG  ++E+    +PF G    L +L   + +  
Sbjct: 165 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKC- 223

Query: 376 EFPKEPS--VPGPAKDLIAQLLVKDPTRR 402
           ++P  P+       +DL+++ +  DP +R
Sbjct: 224 DYPPLPADHYSEELRDLVSRCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 17/172 (9%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L LS +RF+  LG    G +Y   L     ++    A K +  +++ +  +    + E  
Sbjct: 2   LPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTL--KDINNPQQWGEFQQEAS 59

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH---VLRQRQPD------------K 183
           ++  L HP +  L   +   +  C+L E+   GDLH   ++R    D             
Sbjct: 60  LMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKS 119

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                     A ++   +E+L     +++DL   N+L+    H+ ++D  LS
Sbjct: 120 SLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLS 171

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%)

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVS--CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
           N+C V +   GN+  ++PN I+  +   C     RR   +G  GT   +     ++SM  
Sbjct: 120 NNCVVHRDIKGNNVMLMPNGIIKLIDFGC----ARRLAWVGLHGTHSNM-----LKSMH- 169

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
            GT  ++APE+I+  G+G   D W++G  +FE+  G  P   +D    +  + A     P
Sbjct: 170 -GTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMP 228

Query: 379 KEP-SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
           + P S    A D +   L +D   R      A  + RH F
Sbjct: 229 RLPDSFSAAAIDFVTSCLTRDQHER----PSALQLLRHDF 264

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 23/173 (13%)

Query: 84  LRFVHRLGSGDIGSVYLVQLK------------SKSSNNGCFFAAKVMDKRELVSRNKES 131
           L F  +LG G  G V+L + +              S N     A K++  RE  ++N  +
Sbjct: 7   LTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKML--REDANKNARN 64

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR--------QPDK 183
               E +I+  L  P +  L A        C++TE+   GDL+    R        + D 
Sbjct: 65  DFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADV 124

Query: 184 RFHE-SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                S + F A+++   +++L  +  ++RDL   N LV  +  I + DF +S
Sbjct: 125 VTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 29/158 (18%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAK---VMDKRELVSRNKESRARIEREILEMLDH 145
           ++G G  G+V+    K+K+       A K   + D  E V     S A  E  +L+ L H
Sbjct: 7   KIGEGTYGTVF----KAKNRETHEIVALKRVRLDDDDEGVP----SSALREICLLKELKH 58

Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES--------AVRFYASEV 197
             +  LY  L   +   L+ E+C           Q  K++ +S         V+ +  ++
Sbjct: 59  KNIVRLYDVLHSDKKLTLVFEYC----------DQDLKKYFDSCNGDIDPEIVKSFMFQL 108

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L F H   +++RDLKP+N+L+  +G + L DF L+
Sbjct: 109 LKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DH 145
           +  +G G  G V+ V  K     NG   A K++D    +    E+    E  IL+ L DH
Sbjct: 23  IETIGKGTYGKVFKVLNKK----NGSKAAVKILDPIHDIDEEIEA----EYNILKALSDH 74

Query: 146 PFLPTLYATL---DCPR----WSCLLTEFCPGGDLHVLRQ--RQPDKRFHESAVRFYASE 196
           P +   Y      D       W  L+ E C GG +  L +   +  +R  E  + +   E
Sbjct: 75  PNVVKFYGMYYKKDVKNGDQLW--LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHE 132

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ L+ LH+   I+RD+K  N+L+ ++G + L DF +S
Sbjct: 133 ALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS 171

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 25/152 (16%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--P 146
            L  G    VYL+  K +       +  K+       SR K +    E  IL++L     
Sbjct: 5   LLKGGLTNRVYLLGTKDED------YVLKI-----NPSREKGADREREVAILQLLARKGL 53

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH- 205
            +P + A+ +   WS LL E+  G  L      +  +   E        ++   L  LH 
Sbjct: 54  PVPKVLASGESDGWSYLLMEWIEGETL-----DEVSEEEKEDIAE----QLAELLAKLHQ 104

Query: 206 --MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             ++ + + DL P N+LV     + + D++ +
Sbjct: 105 LPLLVLCHGDLHPGNILVDDGKILGIIDWEYA 136

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGC-FFAAKVMDKRELVSRNKESRARIEREILE 141
            +     LG G  G V+L +       N     A K +  +E  S +       E E+L 
Sbjct: 6   TIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTL--KETASNDARKDFEREAELLT 63

Query: 142 MLDHPFLPTLYATLDCPRWSCLLT--EFCPGGDLH-VLRQRQPDKRF-----------HE 187
              H  +   Y    C      +   E+   GDL+  LR   PD  F             
Sbjct: 64  NFQHENIVKFYGV--CTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL 121

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           S +   A ++   + +L     ++RDL   N LV  D  + + DF +S
Sbjct: 122 SQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARAL 375
            +GT  ++APE++ GE +G + D W++G  I E+     P+    H   L L   +A A 
Sbjct: 168 LLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT 227

Query: 376 EFPKEPSVPGPA-KDLIAQLLVKDPTRRMGSK 406
             P  P    P  +D+  + L   P  R  S+
Sbjct: 228 TAPSIPEHLSPGLRDVTLRCLELQPEDRPPSR 259

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++L+ V  LGSG  G+VY      +        A K++++      N E     E  
Sbjct: 4   LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD--EAL 61

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+  +DHP L  L      P    L+T+  P G L        D       +  +  ++ 
Sbjct: 62  IMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDN-IGSQLLLNWCVQIA 119

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
             + +L    +++RDL   NVLV+S  H+ +TDF L+  L+GD     A
Sbjct: 120 KGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNA 168

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 16/153 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVM----DKRELVSRNKESRA-RIEREILEMLD 144
           LG G  G VYL       ++ G   A K +    D +E    +KE  A   E ++L+ L 
Sbjct: 10  LGRGAFGEVYLCY----DADTGRELAVKQVPFDPDSQE---TSKEVNALECEIQLLKNLR 62

Query: 145 HPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           H  +   Y  L  P  +   +  E+ PGG   +  Q +      E+  R Y  +++  + 
Sbjct: 63  HDRIVQYYGCLRDPEEKKLSIFVEYMPGGS--IKDQLKAYGALTENVTRRYTRQILQGVS 120

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +LH   I++RD+K  N+L  S G++ L DF  S
Sbjct: 121 YLHSNMIVHRDIKGANILRDSAGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 59/285 (20%), Positives = 94/285 (32%), Gaps = 75/285 (26%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------REIL 140
           LG G  G V     K+  +  G   A K +   E+ +   + R  +          RE+ 
Sbjct: 17  LGEGTYGKVE----KAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELK 72

Query: 141 EM--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            M  + H  +  L        +  L+ +     DL  +  R+   R  ES V+    +++
Sbjct: 73  IMNEIKHENIMGLVDVYVEGDFINLVMDIM-ASDLKKVVDRK--IRLTESQVKCILLQIL 129

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
             L  LH    ++RDL P N+ + S G   + DF L+                       
Sbjct: 130 NGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLA----------------------- 166

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                              P            +RR +       T ++V           
Sbjct: 167 --------------RRYGYPPYSDTLSKDETMQRREEM------TSKVV----------- 195

Query: 319 VGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGID 362
             T  Y APE++ G E +  AVD W++G    EL  G   F G +
Sbjct: 196 --TLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGEN 238

Length = 335

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVM--DKRELVSRNKESRARIEREILEMLDHPF 147
           LG G  G VYL        + G   AAK +  D     +  + S    E ++L+ L H  
Sbjct: 10  LGQGAFGRVYLCY----DVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHER 65

Query: 148 LPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +   Y  L     +   +  E+ PGG   V  Q +      ES  R Y  +++  + +LH
Sbjct: 66  IVQYYGCLRDRAEKTLTIFMEYMPGGS--VKDQLKAYGALTESVTRKYTRQILEGMSYLH 123

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I++RD+K  N+L  S G++ L DF  S
Sbjct: 124 SNMIVHRDIKGANILRDSAGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLD 144
           V ++G G  G VY    K++    G   A K   K  L + ++   +   REI  L+ L+
Sbjct: 4   VEKIGEGTYGVVY----KARDKLTGEIVALK---KIRLETEDEGVPSTAIREISLLKELN 56

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  L   +       L+ EF    DL       P        ++ Y  +++  + + 
Sbjct: 57  HPNIVRLLDVVHSENKLYLVFEFL-DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYC 115

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           H   +++RDLKP+N+L+  +G + L DF L
Sbjct: 116 HSHRVLHRDLKPQNLLIDREGALKLADFGL 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 41/168 (24%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           ++G G  G V+    K++        A K    + L+   KE     A  E +IL++L H
Sbjct: 19  KIGQGTFGEVF----KARHKKTKQIVALK----KVLMENEKEGFPITALREIKILQLLKH 70

Query: 146 P------------------FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHE 187
                              +  + Y          L+ EFC   DL  L     + +F  
Sbjct: 71  ENVVNLIEICRTKATPYNRYKGSFY----------LVFEFCEH-DLAGLLS-NKNVKFTL 118

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           S ++     ++  L ++H   I++RD+K  N+L+  DG + L DF L+
Sbjct: 119 SEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 115 AAKVMDKRELVSRNKESRARIEREI--LEMLDHPFLPTLYATLDCPRWSCLLT--EFCPG 170
           A K++  R      +  RAR  RE      L HP +  L  + + P    L    E+ PG
Sbjct: 7   AIKLL--RTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPP-GLLFAVFEYVPG 63

Query: 171 GDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---H 226
                LR+    D             +V+ AL   H  GI++RDLKP+N++V   G   H
Sbjct: 64  ---RTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPH 120

Query: 227 IMLTDFDLS 235
             + DF + 
Sbjct: 121 AKVLDFGIG 129

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE 217
           P   CL  EF   G    +    P  +   + ++    +V+  L  LH +GI++RD+KPE
Sbjct: 282 PFPGCL-EEFMMAG--KKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPE 338

Query: 218 NVLVRSDGHIMLTDF----DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPF 270
           N+LV  DG + + DF    D+    + +     L    SPP     P  C     P 
Sbjct: 339 NLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPA 395

Length = 507

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+ +  LG G  G V L      +   G   A K + KRE   +N     + E  IL+ L
Sbjct: 6   LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTL-KRECGQQNTSGWKK-EINILKTL 63

Query: 144 DHPFLPTLYATLDCPRWS----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            H  +        C         L+ E+ P G L   R   P  + + + +  +A ++  
Sbjct: 64  YHENIVKYKGC--CSEQGGKGLQLIMEYVPLGSL---RDYLPKHKLNLAQLLLFAQQICE 118

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            + +LH    I+RDL   NVL+ +D  + + DF L+
Sbjct: 119 GMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLA 154

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+G+ G  ++++      + + VGT  YL+PE+   + +    D W LG+ ++E   G  
Sbjct: 141 KIGDLGVAKLLS-DNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKH 199

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAK----DLIAQLLVKDPTRR 402
           PF   +++  L   + R       P V          LI Q L KD  +R
Sbjct: 200 PFD-ANNQGALILKIIRG----VFPPVSQMYSQQLAQLIDQCLTKDYRQR 244

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 115 AAKVMDKRELVSRNKESR-ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
             KV+ K  +++  +++  AR E   L   DH  +   +          L+ E+  GGDL
Sbjct: 93  KEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDL 152

Query: 174 HV-----LRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
           +      L++  P +  +E  + FY  ++V+AL+ +H   +++RDLK  N+ +   G I 
Sbjct: 153 NKQIKQRLKEHLPFQE-YEVGLLFY--QIVLALDEVHSRKMMHRDLKSANIFLMPTGIIK 209

Query: 229 LTDFDLSLKGDNSTS 243
           L DF  S +  +S S
Sbjct: 210 LGDFGFSKQYSDSVS 224

Length = 478

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI 361
           ++VGT+ Y+APE ISGE +G   D W+LGI   EL  G  P+  I
Sbjct: 152 TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQI 196

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 27/142 (19%)

Query: 281 IVPAVSCLHPK---------------RRRKKKLGNPGTPEIVAEPLDVRSM--SFVGTHE 323
           IV AVS +H                 +    KLG+ G  +I+       SM  + VGT  
Sbjct: 110 IVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILG---SEYSMAETVVGTPY 166

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSV 383
           Y++PE+  G  +    D W LG  ++EL      F   +      N+V + ++    P V
Sbjct: 167 YMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN----PLNLVVKIVQGNYTPVV 222

Query: 384 PGPAKDLIA---QLLVKDPTRR 402
              + +LI+    LL +DP +R
Sbjct: 223 SVYSSELISLVHSLLQQDPEKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 30/117 (25%)

Query: 318 FVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH------------- 363
           +V T  Y APEI +S + +  A+D W++G  + EL      FKG D+             
Sbjct: 169 YVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGT 228

Query: 364 --ELTLANV-VARALEF----PKEPSVPGP---------AKDLIAQLLVKDPTRRMG 404
             E TL+ +   +A  +    P  P  P           A DL+ +LL  DPT+R+ 
Sbjct: 229 PDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRIS 285

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 16/173 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAK--VMDKRELVSRNKESRA-RIEREILEMLDHP 146
           LG G  G+VY        +N G   A K   +D   +++  KE    + E ++L+ L H 
Sbjct: 8   LGKGAYGTVYC-----GLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHV 62

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
            +     T        +  EF PGG +  +L +  P     E     Y  +++  + +LH
Sbjct: 63  NIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGP---LPEPVFCKYTKQILDGVAYLH 119

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDF----DLSLKGDNSTSTAQLVSDQSPP 254
              +++RD+K  NV++  +G I L DF     L+  G + T +  L S    P
Sbjct: 120 NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTP 172

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 13/151 (8%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K   +      A K++D  E  + ++    + E  +L   D P
Sbjct: 9   LEKIGKGSFGEVF----KGIDNRTQKVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSP 62

Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++   Y +   D   W  ++ E+  GG    L +  P     E+ +     E++  L++L
Sbjct: 63  YVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 117

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H    I+RD+K  NVL+   G + L DF ++
Sbjct: 118 HSEKKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H  GII+RDLKP NV V  D  + +
Sbjct: 103 GADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRI 159

Query: 230 TDFDLSLKGDNSTS 243
            DF L+ + D+  +
Sbjct: 160 LDFGLARQADDEMT 173

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 10/158 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK-VMDKRELVSRNKESRA-RIEREI 139
           ++ R    LG G  G VYL       ++ G   A K V    E    +KE  A   E ++
Sbjct: 2   TNWRLGKLLGQGAFGRVYLCY----DADTGRELAVKQVQFDPESPETSKEVNALECEIQL 57

Query: 140 LEMLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           L+ L H  +   Y  L  P  R   +  E  PGG +    Q +      E+  R Y  ++
Sbjct: 58  LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIK--DQLKSYGALTENVTRKYTRQI 115

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  + +LH   I++RD+K  N+L  S G++ L DF  S
Sbjct: 116 LEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGAS 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + R+G G  G VY    K   +      A K++D  E  + ++    + E  +L   D P
Sbjct: 9   LERIGKGSFGEVY----KGIDNRTKEVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSP 62

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           ++   Y +        ++ E+  GG    L +  P     E+ +     E++  L++LH 
Sbjct: 63  YITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYLHS 119

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I+RD+K  NVL+   G + L DF ++
Sbjct: 120 ERKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + R+G G  G V+    K   +      A K++D  E  + ++    + E  +L   D P
Sbjct: 9   LERIGKGSFGEVF----KGIDNRTQQVVAIKIIDLEE--AEDEIEDIQQEITVLSQCDSP 62

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           ++   Y +        ++ E+  GG    L +  P   F E  +     E++  L++LH 
Sbjct: 63  YVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHS 119

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I+RD+K  NVL+   G + L DF ++
Sbjct: 120 EKKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 19/172 (11%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  +D++F   +G G+ G V    LK++   +G    A +   +E  S++       E E
Sbjct: 4   LEWNDIKFQDVIGEGNFGQV----LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 59

Query: 139 ILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQR---QPDKRF---HESAV 190
           +L  L  HP +  L    +   +  L  E+ P G+L   LR+    + D  F   + +A 
Sbjct: 60  VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 119

Query: 191 RF-------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                    +A++V   +++L     I+RDL   N+LV  +    + DF LS
Sbjct: 120 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 171

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 23/159 (14%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIERE 138
           ++ + +LG+G  G V+         NN    A K      MD ++ ++         E +
Sbjct: 8   IQLLRKLGAGQFGEVW-----EGLWNNTTPVAVKTLKPGTMDPKDFLA---------EAQ 53

Query: 139 ILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
           I++ L HP L  LYA  TL+ P +  ++TE    G L    Q    +      +   A++
Sbjct: 54  IMKKLRHPKLIQLYAVCTLEEPIY--IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQ 111

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           V   + +L     I+RDL   NVLV  +    + DF L+
Sbjct: 112 VASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLA 150

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query: 183 KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
           ++  E  ++F   +++  L+++H  GII+RDLKP N+ V  D  + + DF L+ + D+
Sbjct: 113 EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS 170

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 26/115 (22%)

Query: 317 SFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           SF+GT  ++APE+ + E   G+    D W LGI   EL     P   +           R
Sbjct: 160 SFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH--------PMR 211

Query: 374 ALEF-PKEPSVPGPAKD----------LIAQLLVKDPTRRMGSKMGATAIKRHQF 417
           AL    K    P   KD           I + L KDP +R      AT + +H F
Sbjct: 212 ALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKR----PTATKLLQHPF 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R  S VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 172 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 229

Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  +     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 230 DNLPPKLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
            S  GT  +++PE+ISGEG+G   D W++G  + E+     P+   +    +  +  +  
Sbjct: 167 KSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPT 226

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
                P V    +D + ++ V+   R       A  + RH F
Sbjct: 227 NPVLPPHVSDHCRDFLKRIFVEAKLRPS-----ADELLRHTF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++  +FVGT  ++APE+I    +    D W+LGI   EL  G  P   + H + +  ++ 
Sbjct: 156 IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDL-HPMRVLFLIP 214

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
           +      E     P K+ +   L KDP  R  +K     + +H+F
Sbjct: 215 KNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAK----ELLKHKF 255

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 22/172 (12%)

Query: 84  LRFVHRLGSGDIGSVYLVQLK----------SKSSNNGCFFAAKVMDKRELVSRNKESRA 133
           LR   +LG G  G V+L + +           +        A K++  R  V++   +  
Sbjct: 7   LRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKML--RADVTKTARNDF 64

Query: 134 RIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESA--- 189
             E +I+  L +P +  L          C++TE+   GDL+  L QR+ +  F  +    
Sbjct: 65  LKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIP 124

Query: 190 ------VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                 + + A ++   +++L  +  ++RDL   N LV +   I + DF +S
Sbjct: 125 SVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMS 176

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 90  LGSGDIGSVY--LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
           LGSG+ G V   + +++ K  +     A KV+       ++       E EI+  LD+P+
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQID----VAIKVLKNEN--EKSVRDEMMREAEIMHQLDNPY 56

Query: 148 LPTLYATLDCPRWSCLLT-EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  +     C   + +L  E   GG L+     + D+    + V     +V + +++L  
Sbjct: 57  IVRMIGV--CEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELM-HQVSMGMKYLEG 113

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              ++RDL   NVL+ +  +  ++DF LS  L  D+S   A+
Sbjct: 114 KNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKAR 155

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 38/183 (20%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVM-------DKRELVSRNKE 130
           L    L     LG G  G V   +     + N     A K++       D  +LVS    
Sbjct: 9   LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVS---- 64

Query: 131 SRARIEREILEML-DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQP----- 181
                E E+++M+  H  +  L    T + P +  ++ E+   G+L   LR R+P     
Sbjct: 65  -----EMEMMKMIGKHKNIINLLGVCTQEGPLY--VVVEYAAHGNLRDFLRARRPPGEYA 117

Query: 182 ---DKRFHESAVRFY-----ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDF 232
              D R  E  +        A +V   +EFL     I+RDL   NVLV ++ H+M + DF
Sbjct: 118 SPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLV-TEDHVMKIADF 176

Query: 233 DLS 235
            L+
Sbjct: 177 GLA 179

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 21/161 (13%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--I 139
            D   +  LG+G+ G V  V  +     +G   A K++   E+       R +I RE  +
Sbjct: 1   DDFEKLGELGAGNGGVVTKVLHRP----SGLIMARKLI-HLEI---KPAIRNQIIRELKV 52

Query: 140 LEMLDHPFLPTLYATLDCPRWS----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           L   + P++   Y       +S     +  E   GG L  + ++    R  E+ +   + 
Sbjct: 53  LHECNSPYIVGFYGAF----YSDGEISICMEHMDGGSLDQVLKKA--GRIPENILGKISI 106

Query: 196 EVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            V+  L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 107 AVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 147

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S  GT  +++PE+ISGEG+G   D W+LG  + E+     P+   +    +  +  +   
Sbjct: 168 SVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQ--- 224

Query: 377 FPKEPSVPG----PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
            P  P +P      A+D +  + V+   R       A  + RH F
Sbjct: 225 -PTNPQLPSHISEHARDFLGCIFVEARHRP-----SAEELLRHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 85  RFVHR---LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           RF+ R   LG G  G V L +   +  N G   A K +        N  +  + E EIL 
Sbjct: 4   RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILR 61

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +       T D      L+ EF P G L     R  +K   +  ++ YA ++  
Sbjct: 62  NLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLK-YAVQICK 120

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++L     ++RDL   NVLV S+  + + DF L+
Sbjct: 121 GMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 156

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD 239
             E  V++   +++  L+++H  GII+RDLKP N+ V  D  + + DF L+   D
Sbjct: 114 LSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHAD 168

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
            ++ LH  GII+RDLKP N++V+SD  + + DF L+     S  
Sbjct: 130 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM 173

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 27/181 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV----------SRNKES 131
             L F  +LG G  G V+L ++ +        F   V   R L+          ++N  +
Sbjct: 5   GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARN 64

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHES-- 188
               E +IL  L  P +  L          C++TE+   GDL+  L     D +      
Sbjct: 65  DFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGND 124

Query: 189 --------------AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
                         ++   A ++   +++L  +  ++RDL   N LV  +  I + DF +
Sbjct: 125 AVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGM 184

Query: 235 S 235
           S
Sbjct: 185 S 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 14/159 (8%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G+ GSV   QL     +     A K M          E     E   ++  DHP + 
Sbjct: 7   LGEGEFGSVMEGQLSQDDGSQL-KVAVKTMKLDIHTYSEIEEFLS-EAACMKDFDHPNVM 64

Query: 150 TLY------ATLDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFH---ESAVRFYASEVV 198
            L       ++L       ++  F   GDLH  +L  R          ++ ++F   ++ 
Sbjct: 65  KLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKF-MVDIA 123

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           + +E+L     I+RDL   N ++R D  + + DF LS K
Sbjct: 124 LGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKK 162

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 20/60 (33%), Positives = 37/60 (61%)

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD 250
           +F+  +++ AL+++H   + +RDLKP+N+L  +D  + + DF L+    N T TA   +D
Sbjct: 106 QFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTD 165

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 21/166 (12%)

Query: 80  TLSDLRFVHRLGSGDIGSVY-LVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARI 135
            L D   + +LG G  G VY   Q+K+            V  K+ L+   K+     A  
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTG---------RVVALKKILMHNEKDGFPITALR 56

Query: 136 EREILEMLDHP-FLPTLYATLDCP------RWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           E +IL+ L HP  +P +   ++ P      R S  +       DL  L +  P  +  ES
Sbjct: 57  EIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLE-NPSVKLTES 115

Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            ++ Y  +++  + +LH   I++RD+K  N+L+ + G + + DF L
Sbjct: 116 QIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGL 161

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)

Query: 317 SFVGTHEYLAPEIISGEGHGNA-----VDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           +F+GT  ++APE+++ E   +       D W+LGI + EL     P     HEL    V+
Sbjct: 162 TFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPP----HHELNPMRVL 217

Query: 372 ARALEFPKEPSVPGPA------KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
            + L+    P++  P+       D +   LVKDP  R      A  + +H F +
Sbjct: 218 LKILKSEP-PTLDQPSKWSSSFNDFLKSCLVKDPDDR----PTAAELLKHPFVS 266

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 38/136 (27%)

Query: 318 FVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--HELTL------- 367
           +V T  Y APE++ S   +  A+D W++G    EL      F G D   +L L       
Sbjct: 166 YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGT 225

Query: 368 ---------ANVVARA--LEFPKEPSVP--------GP-AKDLIAQLLVKDPTRRMGSKM 407
                     +  AR      PK+P  P         P A DL+ ++LV DP +R+    
Sbjct: 226 PSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRI---- 281

Query: 408 GATAIK--RHQFFNGV 421
             TA +   H +   +
Sbjct: 282 --TADEALAHPYLAQL 295

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 33/130 (25%)

Query: 319 VGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV------ 371
           V T  Y APE++ G       VD W +G    EL  G+  F G +    LA V       
Sbjct: 161 VATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTP 220

Query: 372 -------------ARALEFPKE---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGA 409
                           + FP+          P     A DL+  LLV DP++R    + A
Sbjct: 221 NEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKR----LSA 276

Query: 410 TAIKRHQFFN 419
               RH +F 
Sbjct: 277 AEALRHPYFT 286

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++  +FVGT  ++APE+I    + +  D W+LGI   EL  G  P   + H + +  ++ 
Sbjct: 156 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL-HPMKVLFLIP 214

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
           +      E +   P K+ +   L K+P+ R  +K     + +H+F
Sbjct: 215 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK----ELLKHKF 255

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 20/162 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G+ GSV   QLKS+   +    A K++      S + E   R E   ++  DHP + 
Sbjct: 7   LGKGEFGSVREAQLKSED-GSFQKVAVKMLKADIFSSSDIEEFLR-EAACMKEFDHPNVI 64

Query: 150 TLYAT---------LDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFH---ESAVRFYAS 195
            L            L  P    ++  F   GDLH  +L  R  ++ F    ++ VRF   
Sbjct: 65  KLIGVSLRSRAKGRLPIPM---VILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI- 120

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           ++   +E+L     I+RDL   N ++  +  + + DF LS K
Sbjct: 121 DIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKK 162

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 40/126 (31%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR---- 373
           +V T  Y APE+I G G+   VD W++G  + EL  G+  F+G DH      V+ +    
Sbjct: 182 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 241

Query: 374 ALEF------------PKEPSVPG------------------------PAKDLIAQLLVK 397
           + EF               P  PG                         A+DL++++LV 
Sbjct: 242 SAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVI 301

Query: 398 DPTRRM 403
           DP +R+
Sbjct: 302 DPDKRI 307

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIF 347
            +  K+ + G   I+A+ +D  + S VGT  Y++PE I+     G   G A D W+LG+ 
Sbjct: 204 AKNVKIADFGVSRILAQTMDPCNSS-VGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVS 262

Query: 348 IFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPA----KDLIAQLLVKDPTRR 402
           I E + G  PF G+  +   A+++  A+   + P  P  A    +  I+  L ++P +R
Sbjct: 263 ILEFYLGRFPF-GVGRQGDWASLMC-AICMSQPPEAPATASREFRHFISCCLQREPAKR 319

Length = 353

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           +GT  Y+APE+  G  +    D W+LG  ++E+     PF+    +  L   V R  ++P
Sbjct: 162 IGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ-DLRYKVQRG-KYP 219

Query: 379 KEPSVPGPAKDL---IAQLLVKDPTRRMG 404
             P +   ++DL   I  +L   P  R  
Sbjct: 220 PIPPI--YSQDLQNFIRSMLQVKPKLRPN 246

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 16/96 (16%)

Query: 319 VGTHEYLAPEIISGEGHGNAV------DWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           +G   Y+APE I   G           D W+LG+ I E+  G  P+       T AN+ A
Sbjct: 162 IGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYP----PETYANIFA 217

Query: 373 R--ALEFPKEPSVP----GPAKDLIAQLLVKDPTRR 402
           +  A+     P++P      A+D +A+ L K P RR
Sbjct: 218 QLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRR 253

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
           S VGT  ++APE+IS   +G  VD W+LGI + E+  G  P+
Sbjct: 177 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPY 218

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-ER 137
           L + +L+ +  +G G+ G V L          G +   KV  K   +  +  ++A + E 
Sbjct: 3   LNMKELKLLQTIGKGEFGDVML----------GDYRGNKVAVK--CIKNDATAQAFLAEA 50

Query: 138 EILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
            ++  L H  L  L   +   +    ++TE+   G L   LR R       +  ++F + 
Sbjct: 51  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SL 109

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
           +V  A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L    + P
Sbjct: 110 DVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP 168

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           F ES V+    +++  L++LH   II+RDLK  N+L+   G + + DF L+
Sbjct: 105 FSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES----RARIEREILEM 142
           + +LG G   +VY    K  S  NG   A KV      +S   E      A  E  +L+ 
Sbjct: 10  LEKLGEGSYATVY----KGISRINGQLVALKV------ISMKTEEGVPFTAIREASLLKG 59

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           L H  +  L+  +        + E+    DL     + P    H   VR +  +++  L 
Sbjct: 60  LKHANIVLLHDIIHTKETLTFVFEYMHT-DLAQYMIQHPGG-LHPYNVRLFMFQLLRGLA 117

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++H   I++RDLKP+N+L+   G + L DF L+
Sbjct: 118 YIHGQHILHRDLKPQNLLISYLGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+G+ G   ++    D+ S + +GT  Y++PE+ S + +    D W LG  ++E+     
Sbjct: 142 KVGDLGIARVLENQCDMAS-TLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKH 200

Query: 357 PFKGIDHELTLANVVARALE--FPKEPSVPGPA-KDLIAQLLVKDPTRR 402
            F   D    + ++V R +E   P  P    P   +LIA +L K P +R
Sbjct: 201 AFNAKD----MNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKR 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 295 KKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG 354
           K KLG+ G+  ++  P    + ++VGT  Y+ PEI     + N  D W+LG  ++EL   
Sbjct: 138 KVKLGDFGSARLLTSPGAY-ACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTL 196

Query: 355 TTPFK 359
             PF+
Sbjct: 197 KHPFQ 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APEI+    H N  VD W++G  + EL  G T F G DH
Sbjct: 175 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDH 221

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 41/126 (32%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------------- 363
           +V T  Y APE+I G G+   VD W++G  + E+  GT  F G DH              
Sbjct: 177 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTP 236

Query: 364 --------ELTLANVV-------ARALE-------FPKEPSVPGP-----AKDLIAQLLV 396
                   + T+ N V         + E       FP +           A+DL++++LV
Sbjct: 237 SDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLV 296

Query: 397 KDPTRR 402
            DP +R
Sbjct: 297 IDPEKR 302

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 131 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           E+ +     E + ALEFLH   +I+RD+K +NVL+  DG + LTDF            AQ
Sbjct: 114 EAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGF---------CAQ 164

Query: 247 LVSDQS 252
           +  +QS
Sbjct: 165 ITPEQS 170

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L  V  +GSG  G V+L     K          KV  K        E     E +++ 
Sbjct: 4   SELTLVQEIGSGQFGLVWLGYWLEKR---------KVAIKTIREGAMSEEDFIEEAQVMM 54

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q  K F +  +     +V   +
Sbjct: 55  KLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGK-FSQETLLGMCLDVCEGM 113

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  + ++DF ++
Sbjct: 114 AYLESSNVIHRDLAARNCLVGENQVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 91  GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPFL 148
           G G  G VY    K K+  +G  +A K   K +       S++   REI  L  L H  +
Sbjct: 9   GRGTYGRVYKA--KRKNGKDGKEYAIKKF-KGDKEQYTGISQSAC-REIALLRELKHENV 64

Query: 149 PTLYATL--DCPRWSCLLTEFCPGGDLHVLR-QRQPDKR-FHESAVRFYASEVVVALEFL 204
            +L         +   LL ++       +++  RQ  +     S V+    +++  + +L
Sbjct: 65  VSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYL 124

Query: 205 HMMGIIYRDLKPENVLVRSDG 225
           H   +++RDLKP N+LV  +G
Sbjct: 125 HSNWVLHRDLKPANILVMGEG 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 105 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 161

Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 162 LDFGLARHTDDEMT 175

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 31/177 (17%)

Query: 84  LRFVHRLGSGDIGSVYLVQ------------LKSKSSNNGCFFAAKVMDKRELVSRNKES 131
           L FV +LG G  G V+L +             ++ +++     A KV+        +  +
Sbjct: 7   LNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVL----RPDASDNA 62

Query: 132 RARIERE--ILEMLDHPFLPTLYATLDCPRWS--CLLTEFCPGGDL-HVLRQRQPDKRFH 186
           R    +E  IL  L  P +  L     C      C++ E+   GDL   L++   +    
Sbjct: 63  REDFLKEVKILSRLSDPNIARLLGV--CTVDPPLCMIMEYMENGDLNQFLQKHVAETSGL 120

Query: 187 ESAVR--------FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
               +        + A+++   + +L  +  ++RDL   N LV  +  I + DF +S
Sbjct: 121 ACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            +     +LGSG  G V+    K++        A K++ K +     K+   + E + L+
Sbjct: 6   EEFTLERKLGSGYFGEVWEGLWKNRVR-----VAIKIL-KSD--DLLKQQDFQKEVQALK 57

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY-ASEVV 198
            L H  L +L+A  ++  P +  ++TE    G L     R P+ +    A     A +V 
Sbjct: 58  RLRHKHLISLFAVCSVGEPVY--IITELMEKGSLLAF-LRSPEGQVLPVASLIDMACQVA 114

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +L     I+RDL   N+LV  D    + DF L+
Sbjct: 115 EGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLA 151

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 20/164 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVM-------DKRELVSRNKESRARIEREILEM 142
           +G+G+ G V   +LK        F A K +        +R+ +S         E  I+  
Sbjct: 12  IGAGEFGEVCRGRLKLPGKRE-IFVAIKTLKSGYTEKQRRDFLS---------EASIMGQ 61

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            DHP +  L   +   R   ++TEF   G L     RQ D +F    +      +   ++
Sbjct: 62  FDHPNIIHLEGVVTKSRPVMIITEFMENGALDSF-LRQNDGQFTVIQLVGMLRGIAAGMK 120

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTST 244
           +L  M  ++RDL   N+LV S+    ++DF LS  L+ D S  T
Sbjct: 121 YLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPT 164

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
           P   +  + VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+
Sbjct: 167 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L++ +   ++G G    VY    ++    +    A K +   E++          E ++L
Sbjct: 1   LANFQIEKKIGRGQFSEVY----RATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLL 56

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRF-HESAVRFYASEVV 198
           + L+HP +     +        ++ E    GDL  +++  +  KR   E  V  Y  ++ 
Sbjct: 57  KQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLC 116

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            A+E +H   +++RD+KP NV + + G + L D  L     + T+ A 
Sbjct: 117 SAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH 164

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++L+ V  LGSG  G+VY         N     A KV+  RE  S         E  
Sbjct: 4   LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVL--RENTSPKANKEILDEAY 61

Query: 139 ILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYAS 195
           ++  +  P++  L     C   +  L+T+  P G L  +V   R+   R     +  +  
Sbjct: 62  VMAGVGSPYVCRLLGI--CLTSTVQLVTQLMPYGCLLDYV---RENKDRIGSQDLLNWCV 116

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++   + +L  + +++RDL   NVLV+S  H+ +TDF L+
Sbjct: 117 QIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
           P   +  + VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+
Sbjct: 167 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPY 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 9/66 (13%)

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           E  +     E + AL+FLH   +I+RD+K +N+L+  DG + LTDF            AQ
Sbjct: 114 EGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF---------CAQ 164

Query: 247 LVSDQS 252
           +  +QS
Sbjct: 165 ITPEQS 170

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 19/172 (11%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA--KVMDKRELVSRNKESRARIE 136
           + LS +RF+  LG    G VY   L   +        A   + DK E   R +    + E
Sbjct: 2   INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREE---FKHE 58

Query: 137 REILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQP--------DKRFHE 187
             +   L HP +  L   +   +   ++  +C   DLH  L  R P        D +  +
Sbjct: 59  AMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVK 118

Query: 188 SAVR-----FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           S +         +++   +EFL    ++++DL   NVLV    ++ ++D  L
Sbjct: 119 STLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LGSG+ G+V     K K S      A K++         K+   R E  +++ LD+P++ 
Sbjct: 3   LGSGNFGTVKKGMYKMKKSEKTV--AVKILKNDNNDPALKDELLR-EANVMQQLDNPYIV 59

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            +    +   W  L+ E    G L+   Q+  +K   E  +     +V + +++L     
Sbjct: 60  RMIGICEAESW-MLVMELAELGPLNKFLQK--NKHVTEKNITELVHQVSMGMKYLEETNF 116

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
           ++RDL   NVL+ +  +  ++DF LS  L  D +   A+
Sbjct: 117 VHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAK 155

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 28/160 (17%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L++   + ++G+G  G V+LV+ K        FF  K +  R L  R K S+  IE  ++
Sbjct: 12  LNEYEVIKKIGNGRFGEVFLVKHKRTQE----FFCWKAISYRGLKEREK-SQLVIEVNVM 66

Query: 141 EMLDHP--------FLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAV 190
             L H         FL      L       +L EFC  GDL  ++ +  +   +  E A+
Sbjct: 67  RELKHKNIVRYIDRFLNKANQKL------YILMEFCDAGDLSRNIQKCYKMFGKIEEHAI 120

Query: 191 RFYASEVVVALEFLHMMG-------IIYRDLKPENVLVRS 223
                +++ AL + H +        +++RDLKP+N+ + +
Sbjct: 121 VDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLST 160

Length = 1021

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 7/82 (8%)

Query: 172 DLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT 230
           DLH ++   QP    H   V+ +  +++  L++LH  GI++RD+KP N+LV S+  + + 
Sbjct: 89  DLHKIIVSPQPLSSDH---VKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKIC 145

Query: 231 DFDLSLKGDNSTS---TAQLVS 249
           DF L+   +   S   T ++V+
Sbjct: 146 DFGLARVEEPDESKHMTQEVVT 167

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 36/139 (25%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KL + G    ++E  +     +V T  Y +PE++ G  +G AVD W++G  + EL  G  
Sbjct: 140 KLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQP 199

Query: 357 PFKG---IDHELTLANVVARALEFPKE----------------PSVPGPAK--------- 388
            F G   ID   T+  V+      P E                P+V  P           
Sbjct: 200 LFPGESEIDQLFTIQKVLG---PLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGIL 256

Query: 389 -----DLIAQLLVKDPTRR 402
                DL+  LL  +PT R
Sbjct: 257 SGVLLDLMKNLLKLNPTDR 275

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 134 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 173

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 182 DKRFHESAVRFYASEVVVALEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                E  +   A   V AL +L   + II+RD+KP N+L+  +G+I L DF +S
Sbjct: 101 KSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +H +G G  G+VY     + +S+     A K M      +  K      E + L+ L HP
Sbjct: 26  LHEIGHGSFGAVYF----ATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHP 81

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYASEVVVALEFLH 205
                         + L+ E+C G    +L   ++P +    +A+   A +    L +LH
Sbjct: 82  NTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQ---GLAYLH 138

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDF 232
              +I+RD+K  N+L+   G + L DF
Sbjct: 139 SHNMIHRDIKAGNILLTEPGQVKLADF 165

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 127 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++  +FVGT  ++APE+I    + +  D W+LGI   EL  G  P    + ++    V+ 
Sbjct: 156 IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP----NSDMHPMRVLF 211

Query: 373 RALEFPKEPSVPGP----AKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
              +    P++ G      K+ I   L KDP+ R  +K     + +H+F
Sbjct: 212 LIPKNNP-PTLTGEFSKPFKEFIDACLNKDPSFRPTAK----ELLKHKF 255

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 18/152 (11%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           +LG G   +VY  + +SK ++N       ++  +E+   ++E     A  E  +L+ L H
Sbjct: 13  KLGEGTYATVY--KGRSKLTDN-------LVALKEIRLEHEEGAPCTAIREVSLLKDLKH 63

Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPD--KRFHESAVRFYASEVVVALEF 203
             + TL+  +   +   L+ E+        L+Q   D     +   V+ +  +++  L +
Sbjct: 64  ANIVTLHDIIHTEKSLTLVFEYLDKD----LKQYLDDCGNSINMHNVKLFLFQLLRGLNY 119

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 120 CHRRKVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-E 141
           D++F   +G G+ G V    +++    +G    A +   +E  S N       E E+L +
Sbjct: 3   DIKFEDVIGEGNFGQV----IRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCK 58

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-------HVLRQRQPDKRFHESAVRF-- 192
           +  HP +  L    +   +  +  E+ P G+L        VL       + H +A     
Sbjct: 59  LGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTS 118

Query: 193 -----YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                +AS+V   +++L     I+RDL   NVLV  +    + DF LS
Sbjct: 119 QQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLS 166

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 37/132 (28%), Positives = 51/132 (38%), Gaps = 39/132 (29%)

Query: 321 THE-----YLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           THE     Y APEI+ G + +  AVD W+LG    E+      F G D E+     + R 
Sbjct: 158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPG-DSEIDQLFRIFRT 216

Query: 375 LEFPKEPSVPG----------------------------PAKDLIAQLLVKDPTRRMGSK 406
           L  P E   PG                              +DL++Q+L  DP +R+ +K
Sbjct: 217 LGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAK 276

Query: 407 MGATAIKRHQFF 418
                   H FF
Sbjct: 277 AALA----HPFF 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S  GT  +++PE+ISGEG+G   D W++   + E+     P+   +    +A +   A +
Sbjct: 168 SVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYE---AMAAIFKIATQ 224

Query: 377 FPKEPSVP----GPAKDLIAQLLVKDPTR 401
            P +P +P       +D + Q+ V++  R
Sbjct: 225 -PTKPMLPDGVSDACRDFLKQIFVEEKRR 252

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 27/165 (16%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAA-------KVMDKRELVSRNKESRARIERE--ILEMLD 144
           D+GS Y+        +NG  F+A       +V  K+ +V  + +S     RE  I+  LD
Sbjct: 2   DLGSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKK-IVLTDPQSVKHALREIKIIRRLD 60

Query: 145 HPFLPTLYATL-----DCPRWSCLLTEF--------CPGGDLHVLRQRQPDKRFHESAVR 191
           H  +  +Y  L     D       LTE             DL  + ++ P     E   R
Sbjct: 61  HDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGP---LSEEHAR 117

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDFDLS 235
            +  +++  L+++H   +++RDLKP NV + ++  ++ + DF L+
Sbjct: 118 LFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA 162

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 35/152 (23%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGT 355
           KL + G    +A P +V +  +V T  Y APE++ G+  +G AVD W +G  + E+  G 
Sbjct: 140 KLCDFGFARTLAAPGEVYT-DYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGE 198

Query: 356 TPFKG---ID--HELT--LANVVAR--------------ALEFPKE--------PSVPGP 386
             F G   ID  + +   L N++ R               L   KE        P + G 
Sbjct: 199 PLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGL 258

Query: 387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
             DL  Q L  DP  R  S    + +  H+FF
Sbjct: 259 VLDLAKQCLRIDPDDRPSS----SQLLHHEFF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDHEL 365
           +A   D     +V T  Y APE+I    H N  VD W++G  + E+  G T FKG D+  
Sbjct: 163 LARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD 222

Query: 366 TLANVVARALEFPKEPSVPGP 386
            L  ++       K   VPGP
Sbjct: 223 QLTQIL-------KVTGVPGP 236

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 40.8 bits (95), Expect = 9e-04
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           P+K      VR Y  +++ A+ + H   I++RD+KPEN+L+  +  + L DF
Sbjct: 99  PEK------VRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDF 144

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 35/131 (26%)

Query: 318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
           +V T  Y APE++ G +G+   VD W++G    EL      F G   E+     + R L 
Sbjct: 158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPG-KSEIDQLFKIFRTLG 216

Query: 376 -------------------EFPKEPSVP---------GPAKDLIAQLLVKDPTRRMGSKM 407
                               FPK+  +P           A DL++Q+L  DP +R    +
Sbjct: 217 TPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKR----I 272

Query: 408 GATAIKRHQFF 418
            A     H +F
Sbjct: 273 TAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+G+ G   ++    D+ + +F GT  Y++PE +  +G+ +  D W+LG  ++E+     
Sbjct: 145 KIGDFGVSRLLMGSCDL-ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAH 203

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVP----GPAKDLIAQLLVKDPTRR 402
            F+G +      +VV R +E P  PS+P         ++  +L KDP+ R
Sbjct: 204 AFEGQN----FLSVVLRIVEGPT-PSLPETYSRQLNSIMQSMLNKDPSLR 248

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 39/132 (29%)

Query: 321 THE-----YLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKG---IDHELT----- 366
           THE     Y APEI+ G  H   AVD W++G    E+  G   F G   ID +L      
Sbjct: 156 THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID-QLFKIFQI 214

Query: 367 -----------LANVVARALEFPKEPSVP---------GPAKDLIAQLLVKDPTRRMGSK 406
                      +  +      FPK P                DL++++L  +P +R+ +K
Sbjct: 215 LGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAK 274

Query: 407 MGATAIKRHQFF 418
               A+K H +F
Sbjct: 275 ---EALK-HPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S VGT  Y++PE I   G+    D W+LG  ++E+    +PF G   ++ L ++  + +E
Sbjct: 165 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG--DKMNLFSLCQK-IE 221

Query: 377 FPKEPSVPG-----PAKDLIAQLLVKDPTRR 402
               P +P        ++L++  +  DP +R
Sbjct: 222 QCDYPPLPTEHYSEKLRELVSMCIYPDPDQR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 41.3 bits (96), Expect = 0.001
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 297 KLGNPGTPEIVAEPLDVRSM--SFVGTHEYLAPEIISGE--GHGNAVDWWTLGIFIFELF 352
           K+G+ G    +++ + + SM  S VGT  Y +PE++  E   + +  D W LG  I+EL 
Sbjct: 182 KIGDFG----LSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELC 237

Query: 353 YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD 398
            G TPF   ++   L + + R  + P    + G +K+L   +L+K+
Sbjct: 238 SGKTPFHKANNFSQLISELKRGPDLP----IKGKSKEL--NILIKN 277

Length = 1021

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  +L+ L H  + TL+  +   R   L+ E+        L         H   V+ +  
Sbjct: 53  EVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCGNLMSMHN--VKIFMF 110

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           +++  L + H   I++RDLKP+N+L+   G + L DF L+      T T
Sbjct: 111 QLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT 159

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V  VQ K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 6   DFERISELGAGNGGVVTKVQHKP----SGLIMARKLIHLEIKPAIRNQIIR---ELQVLH 58

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             + P++   Y          +  E   GG L  VL++    KR  E  +   +  V+  
Sbjct: 59  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA---KRIPEEILGKVSIAVLRG 115

Query: 201 LEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             L+   +LG+G  G V++      + N     A K +      + + E+  + E +I++
Sbjct: 6   ESLKLERKLGAGQFGEVWM-----GTWNGTTKVAVKTLKPG---TMSPEAFLQ-EAQIMK 56

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  L  LYA  + + P +  ++TE+   G L    +    K+     +   A+++  
Sbjct: 57  KLRHDKLVQLYAVCSEEEPIY--IVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAE 114

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDFDLS 235
            + +L     I+RDL   N+LV  +  +  + DF L+
Sbjct: 115 GMAYLESRNYIHRDLAARNILV-GENLVCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LGSG  G+VY      +        A K +  RE  S         E  ++  +D+P + 
Sbjct: 15  LGSGAFGTVYKGLWIPEGEKVKIPVAIKEL--REATSPKANKEILDEAYVMASVDNPHVC 72

Query: 150 TLYATLDCPRWSC-LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            L     C   +  L+T+  P G L +   R+         +  +  ++   + +L    
Sbjct: 73  RLLGI--CLTSTVQLITQLMPFGCL-LDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERR 129

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++RDL   NVLV++  H+ +TDF L+
Sbjct: 130 LVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           AL +LH  GII+RD+K EN+ +    + +L DF  + K D    T Q
Sbjct: 197 ALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQ 243

Length = 392

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           V+ +  +++  L + H   +++RDLKP+N+L+   G + L DF L+      T T
Sbjct: 106 VKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT 160

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
           S  G+  ++APE++    +    D W+LG  + E+  G  PF        +  +   A  
Sbjct: 171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASP 230

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           E P   S    A D + +    D  +R
Sbjct: 231 EIPSNISS--EAIDFLEKTFEIDHNKR 255

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           S VGT  Y++PE I   G+    D W+LG  ++E+    +PF G    L          +
Sbjct: 165 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD 224

Query: 377 FPKEPS--VPGPAKDLIAQLLVKDPTRR 402
           +P  PS       + L+   +  DP +R
Sbjct: 225 YPPLPSDHYSEELRQLVNMCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 30/127 (23%)

Query: 307 VAEPLDVRSMSFVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-- 363
           +A   D +   +V T  Y APEI ++ + +   VD W+ G    E+  G   F G DH  
Sbjct: 154 LARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN 213

Query: 364 ------------------ELTLANVVARALEFPKEPSVP---------GPAKDLIAQLLV 396
                              +   N +      PK   VP           A DL+ ++LV
Sbjct: 214 QFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLV 273

Query: 397 KDPTRRM 403
            DP +R+
Sbjct: 274 FDPQKRI 280

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APEI+    H N  VD W++G  + EL  G T F G DH
Sbjct: 177 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 223

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 74  NNNNPLTL-SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR 132
           + ++P  L +DLR    +G G  G+VY     ++        A K M      S  K   
Sbjct: 9   SKDDPEKLFTDLR---EIGHGSFGAVYF----ARDVRTNEVVAIKKMSYSGKQSNEKWQD 61

Query: 133 ARIEREILEMLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAV 190
              E   L+ L HP           +   W  L+ E+C G    +L   +  K   E  +
Sbjct: 62  IIKEVRFLQQLRHPNTIEYKGCYLREHTAW--LVMEYCLGSASDILEVHK--KPLQEVEI 117

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
                  +  L +LH    I+RD+K  N+L+   G + L DF
Sbjct: 118 AAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
           P L AT        L+  +  G  LH+ R    D  +  SA R        AL  LH  G
Sbjct: 85  PQLLATGK----DGLVRGWTEGVPLHLARPHG-DPAWFRSAHR--------ALRDLHRAG 131

Query: 209 IIYRDL-KPENVLVRSDGHIMLTDFDLSL 236
           I + DL KP+N L+  DG   + DF L+ 
Sbjct: 132 ITHNDLAKPQNWLMGPDGEAAVIDFQLAS 160

Length = 365

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           ++G G+ G VY   LK          A K   +  L    K    + E EIL+  DHP +
Sbjct: 2   KIGKGNFGDVYKGVLKGN-----TEVAVKTC-RSTLPPDLKRKFLQ-EAEILKQYDHPNI 54

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L       +   ++ E  PGG L +   R+   R     +   + +    +E+L    
Sbjct: 55  VKLIGVCVQKQPIYIVMELVPGGSL-LTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN 113

Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
            I+RDL   N LV  +  + ++DF +S + +    T      Q P
Sbjct: 114 CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIP 158

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)

Query: 136 EREILEMLDHP-FLPTL----YATLDC---PRWSCLLTEFCPGGDLHVLRQRQPDKRFHE 187
           E  +L  L HP  L  L       L C   P++   L  +       +  + +P      
Sbjct: 210 EARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLYTY-------LGARLRPLGLAQV 262

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           +AV   A +++ A++++H  GII+RD+K ENVLV     I L DF
Sbjct: 263 TAV---ARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDF 304

Length = 461

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            SDLR    +G G  G+VY     ++   N    A K M      S  K      E   L
Sbjct: 17  FSDLR---EIGHGSFGAVYF----ARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYASEVVV 199
           + L HP              + L+ E+C G    +L   ++P +    +AV   A +   
Sbjct: 70  QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQ--- 126

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            L +LH   +I+RD+K  N+L+   G + L DF
Sbjct: 127 GLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 14/165 (8%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-EREILEM 142
           L+ V +LG+G  G V++        N     A K + +  +        A + E  +++ 
Sbjct: 8   LKLVKKLGAGQFGEVWM-----GYYNGHTKVAIKSLKQGSM-----SPEAFLAEANLMKQ 57

Query: 143 LDHPFLPTLYATLDC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L HP L  LYA +   P +  ++TE+   G L    +     +   + +   A+++   +
Sbjct: 58  LQHPRLVRLYAVVTQEPIY--IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGM 115

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            F+     I+RDL+  N+LV       + DF L+   +++  TA+
Sbjct: 116 AFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAR 160

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA- 194
           E  IL  ++HP +  L  T    +++CL           +L + + D   + +A R  A 
Sbjct: 133 EAHILRAINHPSIIQLKGTFTYNKFTCL-----------ILPRYKTDLYCYLAAKRNIAI 181

Query: 195 -------SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
                    V+ A+++LH   II+RD+K EN+ +   G + L DF
Sbjct: 182 CDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDF 226

Length = 391

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 38/163 (23%)

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI----EREILEML 143
            +LG G   +VY    K +S   G   A K       +    E  A      E  +L+ L
Sbjct: 11  DKLGEGSYATVY----KGRSKLTGQLVALKE------IRLEHEEGAPFTAIREASLLKDL 60

Query: 144 DHPFLPTLYATLDCPRWSCLLTEF-----------CPGGDLHVLRQRQPDKRFHESAVRF 192
            H  + TL+  +   +   L+ E+           C GG                  VR 
Sbjct: 61  KHANIVTLHDIIHTKKTLTLVFEYLDTDLKQYMDDCGGG-------------LSMHNVRL 107

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  +++  L + H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 108 FLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 179 RQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDFDLS 235
           R P +      ++ +  +++  +   H  G+++RDLKP+N+LV     ++ + D  L 
Sbjct: 101 RGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLG 158

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 90  LGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G  G V+L +  +     +    A K + +    +R    R   E E+L +L H  +
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR---EAELLTVLQHQHI 69

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHE------------SAVRFYAS 195
              Y      R   ++ E+   GDL+  LR   PD +                 +   AS
Sbjct: 70  VRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIAS 129

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++   + +L  +  ++RDL   N LV     + + DF +S
Sbjct: 130 QIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 37/144 (25%)

Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKG---ID 362
           +          +V T  Y APE++ G+  +G  VD W +G  + EL  G   F G   ID
Sbjct: 150 LRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDID 209

Query: 363 H----------------ELTLANVVARALEFPKEPSVP------------GPAKDLIAQL 394
                            EL  +N     + FP EPS P             PA D +   
Sbjct: 210 QLYLIQKCLGPLPPSHQELFSSNPRFAGVAFP-EPSQPESLERRYPGKVSSPALDFLKAC 268

Query: 395 LVKDPTRRMGSKMGATAIKRHQFF 418
           L  DP  R    +    + +H +F
Sbjct: 269 LRMDPKER----LTCDELLQHPYF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 39/132 (29%)

Query: 321 THE-----YLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           THE     Y APEI+ G       VD W++G    E+      F G D E+     + R 
Sbjct: 157 THEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPG-DSEIDQLFRIFRT 215

Query: 375 LEFPKEPSVPG--------------PAK--------------DLIAQLLVKDPTRRMGSK 406
           L  P E   PG                +              DL++++LV DP +R+ +K
Sbjct: 216 LGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAK 275

Query: 407 MGATAIKRHQFF 418
                  +H +F
Sbjct: 276 AAL----QHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           F E  ++ +  +++  L + H    ++RD+K  N+L+ + G I L DF L+
Sbjct: 113 FSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            +DLR    +G G  G+VY     ++        A K M      S  K      E + L
Sbjct: 27  FTDLR---EIGHGSFGAVYF----ARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFL 79

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYASEVVV 199
           + + HP              + L+ E+C G    +L   ++P +    +A+   A +   
Sbjct: 80  QRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQ--- 136

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            L +LH   +I+RD+K  N+L+   G + L DF
Sbjct: 137 GLAYLHSHNMIHRDIKAGNILLTEPGQVKLADF 169

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           D+     LG G  G V+L +  + S + +    A K +    L +R    R   E E+L 
Sbjct: 6   DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR---EAELLT 62

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDK-------------RFHE 187
            L H  +   Y          ++ E+   GDL+  LR   PD                  
Sbjct: 63  NLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGL 122

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           S +   AS++   + +L     ++RDL   N LV ++  + + DF +S
Sbjct: 123 SQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 170

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL--VSRNKESRARIEREIL 140
           D   +  LG+G+ G V+ V  K           A+ +   E+    RN+  R   E ++L
Sbjct: 6   DFEKISELGAGNGGVVFKVSHKPSG-----LIMARKLIHLEIKPAIRNQIIR---ELQVL 57

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQ--RQPDKRFHESAVRFYASEV 197
              + P++   Y          +  E   GG L  VL++  R P++   + ++      V
Sbjct: 58  HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AV 112

Query: 198 VVALEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 113 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 151

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 30/116 (25%)

Query: 318 FVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--HELTLANVV--- 371
           +V T  Y APEI ++ +G+  A+D W++G  + E+      F G D  H+L L   V   
Sbjct: 169 YVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGT 228

Query: 372 -----------ARALEF----PKEPSVP---------GPAKDLIAQLLVKDPTRRM 403
                       RA  +    P +P VP           A DL+ ++L  +P +R+
Sbjct: 229 PSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRI 284

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFE 350
           K +   K+G+ G  +I++     ++ + VGT  Y++PE+  G+ +    D W LG  ++E
Sbjct: 136 KHKMVVKIGDFGISKILSS--KSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYE 193

Query: 351 LFYGTTPFKGIDHELTLANVVARALEF------PKEPSVPGPAKDLIAQLLVKDPTRR 402
           L      F+        AN+ A  L+       P         + LI  +L  DP++R
Sbjct: 194 LASLKRAFEA-------ANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKR 244

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTP 357
           +D  + SFVGT  Y++PE + G  +    D W++G+ + EL  G  P
Sbjct: 155 IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYP 201

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 38/132 (28%)

Query: 321 THE-----YLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           THE     Y APE++ G  H    VD W++G    E+      F G D EL     + + 
Sbjct: 169 THEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPG-DSELQQLLHIFKL 227

Query: 375 LEFPKEPSVPGPAK---------------------------DLIAQLLVKDPTRRMGSKM 407
           L  P E   PG +K                           DL+ ++L  DP +R+ +K 
Sbjct: 228 LGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAK- 286

Query: 408 GATAIKRHQFFN 419
              A+  H +F+
Sbjct: 287 --AALT-HPYFD 295

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTL 367
           +D  + SFVGT  Y++PE + G  +    D W++G+ + E+  G  P    D    EL  
Sbjct: 155 IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMF 214

Query: 368 ANVVAR---ALEFPKEPSVPG 385
              V       E    P  PG
Sbjct: 215 GCPVEGDPAESETSPRPRPPG 235

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI----ER 137
             +  +  LG G  G VY    K            +V  K   V+ N   R RI    E 
Sbjct: 6   EKITLIRELGQGSFGMVYEGLAKGVVKGEP---ETRVAIK--TVNENASMRERIEFLNEA 60

Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHE-----SAVR 191
            +++  +   +  L   +   + + ++ E    GDL   LR R+P+   +      +  +
Sbjct: 61  SVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQK 120

Query: 192 FY--ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           F   A+E+   + +L     ++RDL   N +V  D  + + DF ++
Sbjct: 121 FIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMT 166

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           ++TE+C  GDL    +R+ +       +  ++ +V   + FL     I+RDL   NVL+ 
Sbjct: 116 VITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLL- 174

Query: 223 SDGHIM-LTDFDLS 235
           + G I+ + DF L+
Sbjct: 175 THGKIVKICDFGLA 188

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	100.0
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	100.0
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.96
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.96
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.95
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.95
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.95
PRK09188	365	serine/threonine protein kinase; Provisional	99.94
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.92
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.91
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.91
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.9
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.9
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.9
PRK12274	218	serine/threonine protein kinase; Provisional	99.89
PRK10345	210	hypothetical protein; Provisional	99.86
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.85
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.85
smart00090	237	RIO RIO-like kinase.	99.84
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.82
PRK14879	211	serine/threonine protein kinase; Provisional	99.82
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.81
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.81
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.81
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.8
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.76
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.75
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.75
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.7
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.66
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.58
KOG1243	690	consensus Protein kinase [General function predict	99.53
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.53
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.5
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.49
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.48
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.47
KOG3087	229	consensus Serine/threonine protein kinase [General	99.36
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.34
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.29
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.28
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.18
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.18
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.07
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.95
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.95
PRK09902	216	hypothetical protein; Provisional	98.86
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.76
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.72
COG4248	637	Uncharacterized protein with protein kinase and he	98.7
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.67
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.65
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.61
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.57
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.49
PF01636	239	APH: Phosphotransferase enzyme family This family	98.46
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.45
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.41
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.39
PLN02876	822	acyl-CoA dehydrogenase	98.29
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.23
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.19
PRK10593	297	hypothetical protein; Provisional	97.97
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.91
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.88
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.87
KOG2270	520	consensus Serine/threonine protein kinase involved	97.82
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.81
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.81
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.8
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.79
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.66
PRK05231	319	homoserine kinase; Provisional	97.63
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.41
PLN02236	344	choline kinase	97.33
PLN02756	418	S-methyl-5-thioribose kinase	97.28
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.27
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.16
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.06
PRK12396	409	5-methylribose kinase; Reviewed	97.05
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.94
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.93
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.89
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.78
PTZ00384	383	choline kinase; Provisional	96.48
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.46
KOG1236	565	consensus Predicted unusual protein kinase [Genera	96.25
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	96.18
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	96.17
PRK06148	1013	hypothetical protein; Provisional	96.02
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	95.94
PRK11768	325	serine/threonine protein kinase; Provisional	95.86
PTZ00296	442	choline kinase; Provisional	95.74
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	95.08

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-68  Score=505.49  Aligned_cols=358  Identities=59%  Similarity=1.063  Sum_probs=304.8

Q ss_pred             CCChhHHHHHHhhhcCCCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHH
Q 012762           55 NDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR  134 (457)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~  134 (457)
                      ..|..|..+.....     .....+.+++|++++.||.|.-|+||+|+++.    +++.+|+||+.+..+..+.+..+..
T Consensus        55 ~~d~~w~a~~~~~~-----~~~~~l~l~~f~llk~LG~GdiG~VyL~~l~~----t~~~fAmKVmdK~~l~~rkKl~Ra~  125 (459)
T KOG0610|consen   55 GNDVRWEAISSIRN-----SKDGSLGLRHFRLLKRLGCGDIGTVYLVELRG----TNCLFAMKVMDKESLASRKKLKRAQ  125 (459)
T ss_pred             CCchhhhhhccccc-----cCCCccCHHHHHHHHHcCCCCceeEEEEEecC----CCceEEEEEecHHHHhhhhHHHHHH
Confidence            34557777765442     24566788999999999999999999999984    6789999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecC
Q 012762          135 IEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDL  214 (457)
Q Consensus       135 ~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDI  214 (457)
                      .|.+||.+++||.++.+|+.|+.+.+.|||||||.||+|..++++++.+.+++..++.|+.+++.||+|||.+|||.|||
T Consensus       126 tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDL  205 (459)
T KOG0610|consen  126 TEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDL  205 (459)
T ss_pred             HHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcc---
Q 012762          215 KPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK---  291 (457)
Q Consensus       215 Kp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  291 (457)
                      ||+||||.++|++.|+||.|+....-.. +......   +....            .+.+|.     ....+|+.+.   
T Consensus       206 KPENILvredGHIMLsDFDLS~~~~~~P-t~~~s~~---~~~~~------------~~~~~~-----~~~~s~f~~r~~~  264 (459)
T KOG0610|consen  206 KPENILVREDGHIMLSDFDLSLRCPVSP-TLVKSSS---PRSSG------------SQPSCR-----SRQPSCFSPRCLS  264 (459)
T ss_pred             CcceeEEecCCcEEeeeccccccCCCCC-eeeccCC---CCCCC------------CCcccc-----cccccccccchhc
Confidence            9999999999999999999998773211 1111000   00000            011221     1222333322   


Q ss_pred             --hhccc--cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHH
Q 012762          292 --RRRKK--KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL  367 (457)
Q Consensus       292 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~  367 (457)
                        +++++  .......+..+.++.+.+.++|+||-.|+|||++.|.+++.++|+|+|||++|||++|..||.|.++++.+
T Consensus       265 ~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl  344 (459)
T KOG0610|consen  265 SSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETL  344 (459)
T ss_pred             cccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhH
Confidence              21111  11113345677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      .+++.....+|..+.++..++|||+++|..||++|......++||.+||||++++|++++...||+||.|.....
T Consensus       345 ~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWaLir~~~PP~iP~~~d~~~  419 (459)
T KOG0610|consen  345 RNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWALIRCARPPEIPKPVDGGL  419 (459)
T ss_pred             HHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCChhheeccCCCcCCCccccCc
Confidence            999999999999989999999999999999999999999999999999999999999999999999999987765

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-62  Score=462.23  Aligned_cols=290  Identities=38%  Similarity=0.718  Sum_probs=260.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|+++++||+|+||+||+++.+    ++++.||+|+++|+.+.........+.|..||..++||+||+++..|++
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~----dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt   96 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKK----DTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT   96 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEc----ccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc
Confidence            466789999999999999999999977    5899999999999999988888999999999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+.+|||+||+.||.|...+++.  +.++|..++.|+.+|+.||.|||++|||||||||+||||+.+|+++|+|||+++.
T Consensus        97 ~~kLylVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~  174 (357)
T KOG0598|consen   97 EEKLYLVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKE  174 (357)
T ss_pred             CCeEEEEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchh
Confidence            99999999999999999988876  8899999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ....                                                                      +..+.+
T Consensus       175 ~~~~----------------------------------------------------------------------~~~t~t  184 (357)
T KOG0598|consen  175 DLKD----------------------------------------------------------------------GDATRT  184 (357)
T ss_pred             cccC----------------------------------------------------------------------CCcccc
Confidence            4321                                                                      112235


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      +|||+.|||||++.+.+|+..+|+||||+++|||++|.+||.+.+...++.+++.+....+. .-++.+++++++++|..
T Consensus       185 fcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p-~~ls~~ardll~~LL~r  263 (357)
T KOG0598|consen  185 FCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPP-GYLSEEARDLLKKLLKR  263 (357)
T ss_pred             ccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCC-ccCCHHHHHHHHHHhcc
Confidence            79999999999999999999999999999999999999999999999999999888733332 23889999999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          398 DPTRRMGSKMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      ||++|......+.+|.+||||.+++|..+  +...|||.|.-...++.+
T Consensus       264 dp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~~~~~~  312 (357)
T KOG0598|consen  264 DPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTGLEDTS  312 (357)
T ss_pred             CHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCCccccc
Confidence            99999865556999999999999999866  678899999876665543

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-62  Score=474.70  Aligned_cols=288  Identities=38%  Similarity=0.648  Sum_probs=260.4

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      .....||.+.+.||+|+|++|++|+.+    .+++.|||||+.|+.+....+.+-+.+|.++|.+| +||.|++||..|+
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~----~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQ  144 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREK----ATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQ  144 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeec----CCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEee
Confidence            455679999999999999999999987    48999999999999999999999999999999999 8999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ++..+|+|+||+++|+|..+++..  +.|++..++.++.||+.||+|||++|||||||||+||||+.||++||+|||-|+
T Consensus       145 D~~sLYFvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK  222 (604)
T KOG0592|consen  145 DEESLYFVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAK  222 (604)
T ss_pred             cccceEEEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccc
Confidence            999999999999999999999886  889999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+.+......                           .+..+                              ...+.+..
T Consensus       223 ~l~~~~~~~~---------------------------~~~~~------------------------------~~a~s~~~  245 (604)
T KOG0592|consen  223 ILSPSQKSQE---------------------------NPVDP------------------------------NQASSRRS  245 (604)
T ss_pred             cCChhhcccc---------------------------CccCc------------------------------ccccCccc
Confidence            8865433211                           00000                              00111234


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      +|+||..|++||+|.....+..+|||+||||||+|+.|.+||.+.++..++.+|+...+.+|..  +++.+++||+++|.
T Consensus       246 SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~--fp~~a~dLv~KLLv  323 (604)
T KOG0592|consen  246 SFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEG--FPEDARDLIKKLLV  323 (604)
T ss_pred             ceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHc
Confidence            7899999999999999999999999999999999999999999999999999999999999876  89999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFI  434 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~  434 (457)
                      .||.+|++    ++||.+||||.+++|..++...||-+
T Consensus       324 ~dp~~Rlt----~~qIk~HpFF~~Vdw~nlw~~~PP~l  357 (604)
T KOG0592|consen  324 RDPSDRLT----SQQIKAHPFFEGVDWENLWQQTPPKL  357 (604)
T ss_pred             cCcccccc----HHHHhhCcccccCChhhhhhcCCCcc
Confidence            99999999    99999999999999999998887765

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3e-61  Score=471.27  Aligned_cols=339  Identities=35%  Similarity=0.610  Sum_probs=272.9

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..+||.++..||+|+||.||+|+.+    .+|..||+|+++|..+....+...++.|..||...++|.||+||..|
T Consensus       135 R~r~~~~DFe~Lk~IgkGAfGeVrLarKk----~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsF  210 (550)
T KOG0605|consen  135 RTRLSLDDFELLKVIGKGAFGEVRLARKK----DTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSF  210 (550)
T ss_pred             cccCCcccchhheeeccccceeEEEEEEc----cCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEe
Confidence            34668899999999999999999999977    48999999999999999999999999999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ++.+++||||||++||++..++.+.  +.+++..++.++.+++.|++-||+.|+|||||||+|+||+..|++||+||||+
T Consensus       211 QD~~~LYLiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs  288 (550)
T KOG0605|consen  211 QDKEYLYLIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLS  288 (550)
T ss_pred             cCCCeeEEEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeecccccc
Confidence            9999999999999999999999886  88999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC-CCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNC-IVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      .-+..........       .+..... .  +....+.   ..++ ..+. +...    +...      ...-......-
T Consensus       289 ~gl~~~~~~~~~~-------~~~~~~~-~--~~~~~~~---~~~~~~~~~-~~~~----~~~~------~~~w~~nrr~~  344 (550)
T KOG0605|consen  289 TGLDKKHRIESYR-------LDEQMQI-N--LSEAKPS---DFPKFNTPR-STMS----RREQ------LQTWKRNRRQL  344 (550)
T ss_pred             chhhhhhhhhhhc-------chhhhhh-h--hccCCCc---ccccccccc-chhh----HHHH------HHHHHhhhhhh
Confidence            5433211100000       0000000 0  0000000   0000 0000 0000    0000      00001112233


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~  392 (457)
                      ..+++|||.|||||++.+.+|+..+|+||||||+||||.|.+||.+.+..+.+.+|+.-.  +.+|....++++++|||.
T Consensus       345 a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~  424 (550)
T KOG0605|consen  345 AYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLIT  424 (550)
T ss_pred             hhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHH
Confidence            346799999999999999999999999999999999999999999999999999999765  777887888999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccccccc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (457)
                      +||. ||++|.. ...++||.+||||++++|..|....|||+|......|-+.-
T Consensus       425 rll~-d~~~RLG-~~G~~EIK~HPfF~~v~W~~l~~~~apfvP~v~~~~DT~yF  476 (550)
T KOG0605|consen  425 RLLC-DPENRLG-SKGAEEIKKHPFFKGVDWDHLREMPAPFVPQVNSELDTQYF  476 (550)
T ss_pred             HHhc-CHHHhcC-cccHHHHhcCCccccCCcchhhcCCCCCCCCCCCccccccc
Confidence            9999 9999998 66799999999999999999999999999998887775543

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-60  Score=435.37  Aligned_cols=278  Identities=41%  Similarity=0.779  Sum_probs=259.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+..++||++++.||.|+||.|.+++.+    .+|..||+|+++++++..-...+...+|..+|+.+.||+++++++.|.
T Consensus        39 ~~~~l~dfe~~~tlGtGSFGrV~LVr~k----~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~  114 (355)
T KOG0616|consen   39 NPYSLQDFERLKTLGTGSFGRVHLVREK----HSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFK  114 (355)
T ss_pred             CCcchhhhhheeeeccCccceEEEEEEc----cCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeec
Confidence            3488899999999999999999999988    489999999999999988888889999999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +.+.+||||||++||.|..++++.  +++++..++.++.||+.||+|||+++|++|||||+||||+.+|.+||+|||+|+
T Consensus       115 d~~~lymvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  115 DNSNLYMVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             cCCeEEEEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceE
Confidence            999999999999999999999876  889999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ....                                                                         ++.
T Consensus       193 ~v~~-------------------------------------------------------------------------rT~  199 (355)
T KOG0616|consen  193 RVSG-------------------------------------------------------------------------RTW  199 (355)
T ss_pred             EecC-------------------------------------------------------------------------cEE
Confidence            6543                                                                         244


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ++||||.|+|||++...+|+.++|.|||||++|||+.|.+||.......++.+|+.+.+.+|.-  ++.++++||.++|+
T Consensus       200 TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~--fs~~~kdLl~~LL~  277 (355)
T KOG0616|consen  200 TLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSY--FSSDAKDLLKKLLQ  277 (355)
T ss_pred             EecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcc--cCHHHHHHHHHHHh
Confidence            7799999999999999999999999999999999999999999999999999999999999986  89999999999999


Q ss_pred             hCCCCCCCC-CcChHHHhcCCCCCCCCchhh--hccCCCCCC
Q 012762          397 KDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAKPPFIP  435 (457)
Q Consensus       397 ~dP~~Rps~-~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~  435 (457)
                      .|-.+|..- .....+|.+||||++++|..+  +...+|+.|
T Consensus       278 vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~p  319 (355)
T KOG0616|consen  278 VDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEP  319 (355)
T ss_pred             hhhHhhhcCcCCCccccccCcccccccHHHHhhccccCCCCC
Confidence            999999543 446899999999999999877  567789988

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-60  Score=474.35  Aligned_cols=296  Identities=37%  Similarity=0.720  Sum_probs=271.5

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      ..+.+++|+++++||+|.||+|++++.+    .+++.||||+++|..+..++..+..+.|.+|+... +||.++.++.+|
T Consensus       363 ~~~~l~~F~~l~vLGkGsFGkV~lae~k----~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~f  438 (694)
T KOG0694|consen  363 GPLTLDDFRLLAVLGRGSFGKVLLAELK----GTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCF  438 (694)
T ss_pred             CcccccceEEEEEeccCcCceEEEEEEc----CCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccc
Confidence            5788899999999999999999999998    48889999999999999999999999999999888 599999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      +..+++|+||||+.||++..+++   ...+++..++.|+..|+.||+|||++|||+||||.+|||||.+|++||+|||++
T Consensus       439 QT~~~l~fvmey~~Ggdm~~~~~---~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlc  515 (694)
T KOG0694|consen  439 QTKEHLFFVMEYVAGGDLMHHIH---TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLC  515 (694)
T ss_pred             ccCCeEEEEEEecCCCcEEEEEe---cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccc
Confidence            99999999999999999654433   378999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +..-.                                                                      .+.++
T Consensus       516 Ke~m~----------------------------------------------------------------------~g~~T  525 (694)
T KOG0694|consen  516 KEGMG----------------------------------------------------------------------QGDRT  525 (694)
T ss_pred             cccCC----------------------------------------------------------------------CCCcc
Confidence            75421                                                                      12345


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      .++|||+.|||||++.+..|+.++|.|||||+|||||.|+.||.+.++++++..|+.....+|..  ++.++.++|+++|
T Consensus       526 sTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~--ls~ea~~il~~ll  603 (694)
T KOG0694|consen  526 STFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRF--LSKEAIAIMRRLL  603 (694)
T ss_pred             ccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCc--ccHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999987  9999999999999


Q ss_pred             hhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccccCCCC
Q 012762          396 VKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTTNSSID  451 (457)
Q Consensus       396 ~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  451 (457)
                      ..||++|..+. .++++|.+||||+.++|..|  +..+|||+|.....+|.++-..+-.
T Consensus       604 ~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P~i~~~~D~snFd~eFt  662 (694)
T KOG0694|consen  604 RKNPEKRLGSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPEDVSNFDEEFT  662 (694)
T ss_pred             ccCcccccCCCCCCchhhhhCCccccCCHHHHhhccCCCCCCcccCChhhhcccchhhh
Confidence            99999999973 57899999999999999987  6789999999999999887665443

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3e-60  Score=450.17  Aligned_cols=262  Identities=29%  Similarity=0.445  Sum_probs=230.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh----hhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS----RNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~----~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+.|.+.+.||+|+||.|-+|..+    .+|+.||||+++++....    .+....+++|++||++|+|||||+++++|
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~----~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f  245 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEK----KTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFF  245 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEc----ccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeee
Confidence            3457899999999999999999987    599999999999987655    23455567999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEecc
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDF  232 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DF  232 (457)
                      ...+..||||||++||+|.+.+-.+  +.+.+...+.++.||+.||.|||++||+||||||+|||+..+   ..+||+||
T Consensus       246 ~~~ds~YmVlE~v~GGeLfd~vv~n--k~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDF  323 (475)
T KOG0615|consen  246 EVPDSSYMVLEYVEGGELFDKVVAN--KYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDF  323 (475)
T ss_pred             ecCCceEEEEEEecCccHHHHHHhc--cccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEeccc
Confidence            9999999999999999999888775  778999999999999999999999999999999999999866   68999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+|+....                                                                       .
T Consensus       324 GlAK~~g~-----------------------------------------------------------------------~  332 (475)
T KOG0615|consen  324 GLAKVSGE-----------------------------------------------------------------------G  332 (475)
T ss_pred             chhhcccc-----------------------------------------------------------------------c
Confidence            99976642                                                                       2


Q ss_pred             cccccccCCCCccCchhhcCCCC---CccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCC--CCCCCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGH---GNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEF--PKEPSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~---~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~  386 (457)
                      ..+.++|||+.|.|||++.+..+   ..++||||+||+||-+|+|.+||.+..... ..++|..+.+.+  +.+..++++
T Consensus       333 sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Isee  412 (475)
T KOG0615|consen  333 SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEE  412 (475)
T ss_pred             eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHH
Confidence            23347899999999999987753   458899999999999999999998876555 677777777665  456789999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ..+||..||..||++||+    ++++|+||||+...
T Consensus       413 a~dlI~~mL~VdP~~R~s----~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  413 ALDLINWMLVVDPENRPS----ADEALNHPWFKDAP  444 (475)
T ss_pred             HHHHHHHhhEeCcccCcC----HHHHhcChhhhccc
Confidence            999999999999999999    99999999999765

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.4e-59  Score=461.59  Aligned_cols=256  Identities=29%  Similarity=0.500  Sum_probs=241.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+|...+.||+|+|+.||.+++.    .+|..||+|++.+..+......+.+.+|++|.+.|+|||||+++++|++.+++
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~----~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nV   93 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDL----DTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNV   93 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEc----CCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCce
Confidence            57999999999999999999986    48999999999999998888999999999999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||+|+|..++|..++++.  +.++|.+++.+++||+.||.|||+++|||||||..|+||+++.+|||+|||||..+.. 
T Consensus        94 YivLELC~~~sL~el~Krr--k~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~-  170 (592)
T KOG0575|consen   94 YIVLELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEY-  170 (592)
T ss_pred             EEEEEecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecC-
Confidence            9999999999999999865  7899999999999999999999999999999999999999999999999999865542 


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                           .+.+.+++|||
T Consensus       171 ---------------------------------------------------------------------~~Erk~TlCGT  181 (592)
T KOG0575|consen  171 ---------------------------------------------------------------------DGERKKTLCGT  181 (592)
T ss_pred             ---------------------------------------------------------------------cccccceecCC
Confidence                                                                                 24566789999


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |.|+|||++.+..++..+||||+||+||-||.|++||+...-++.+.+|....+.+|..  ++.++++||.+||..||.+
T Consensus       182 PNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~--ls~~A~dLI~~lL~~~P~~  259 (592)
T KOG0575|consen  182 PNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSH--LSAEAKDLIRKLLRPNPSE  259 (592)
T ss_pred             CcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccc--cCHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999985  9999999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~  419 (457)
                      ||+    +++||+|+||+
T Consensus       260 Rps----l~~vL~h~Ff~  273 (592)
T KOG0575|consen  260 RPS----LDEVLDHPFFK  273 (592)
T ss_pred             CCC----HHHHhcCHhhh
Confidence            999    99999999993

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-57  Score=426.82  Aligned_cols=261  Identities=32%  Similarity=0.452  Sum_probs=229.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++++.+..||+|..|+||+|.++    .+++.+|+|++...  ......+++.+|++||+.++||+||.+|++|.
T Consensus        74 ~~i~~~dle~~~~lG~G~gG~V~kv~Hk----~t~~i~AlK~I~~~--~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   74 NGISLSDLERLGVLGSGNGGTVYKVRHK----PTGKIYALKVILLN--IDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             cccCHHHhhhhhhcccCCCcEEEEEEEc----CCCeEEEEEeeccc--CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            4467789999999999999999999988    58999999999332  44566788899999999999999999999999


Q ss_pred             cCCc-EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          157 CPRW-SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       157 ~~~~-~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      .++. ++|+||||+||+|..+++..  ++++|.....++.++++||.|||+ ++||||||||.||||++.|.|||||||.
T Consensus       148 ~~~~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGV  225 (364)
T KOG0581|consen  148 SNGEEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGV  225 (364)
T ss_pred             eCCceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccc
Confidence            9985 99999999999999998876  789999999999999999999995 9999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.+.+.                                                                        -
T Consensus       226 S~~lvnS------------------------------------------------------------------------~  233 (364)
T KOG0581|consen  226 SGILVNS------------------------------------------------------------------------I  233 (364)
T ss_pred             cHHhhhh------------------------------------------------------------------------h
Confidence            8766432                                                                        1


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC-----ChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI-----DHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                      ..+++||..|||||.+.+..|+.++||||||+.++|+++|++||...     ...+.+..|+...........+++++++
T Consensus       234 a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~  313 (364)
T KOG0581|consen  234 ANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRS  313 (364)
T ss_pred             cccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHH
Confidence            23678999999999999999999999999999999999999999874     3445666666643332222259999999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ||..||+.||.+|++    +.|+++|||++..
T Consensus       314 FV~~CL~Kdp~~R~s----~~qLl~Hpfi~~~  341 (364)
T KOG0581|consen  314 FVSCCLRKDPSERPS----AKQLLQHPFIKKF  341 (364)
T ss_pred             HHHHHhcCCcccCCC----HHHHhcCHHHhhc
Confidence            999999999999999    9999999999864

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-54  Score=411.45  Aligned_cols=259  Identities=26%  Similarity=0.481  Sum_probs=228.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|.+.++||.|+||+||+|+++.    ++..||||.+.+..+ .....+.+..|++||+.++|||||.+++++..++
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~----~~~~VAIK~i~~~~l-~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~   82 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKK----SGTEVAIKCIAKKKL-NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD   82 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEecc----CCceEEeeeehhhcc-CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC
Confidence            45789999999999999999999884    778999999988765 3345566788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC------CCEEEeccC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD------GHIMLTDFD  233 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~------~~vkl~DFG  233 (457)
                      ++|||||||+||+|..+++..  +.+++..++.++.||+.||++||+++||||||||+||||+..      -.+||+|||
T Consensus        83 ~i~lVMEyC~gGDLs~yi~~~--~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFG  160 (429)
T KOG0595|consen   83 FIYLVMEYCNGGDLSDYIRRR--GRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFG  160 (429)
T ss_pred             eEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccc
Confidence            999999999999999999986  689999999999999999999999999999999999999865      458999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +|+.+.+.....                                                                    
T Consensus       161 fAR~L~~~~~a~--------------------------------------------------------------------  172 (429)
T KOG0595|consen  161 FARFLQPGSMAE--------------------------------------------------------------------  172 (429)
T ss_pred             hhhhCCchhHHH--------------------------------------------------------------------
Confidence            998886433322                                                                    


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-CCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-PSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~  392 (457)
                         +++|++.|||||++....|+-|+|+||+|+|+|+|++|+.||...+..+.+..+..+....+.. ..++....+|+.
T Consensus       173 ---tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~  249 (429)
T KOG0595|consen  173 ---TLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLI  249 (429)
T ss_pred             ---HhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhh
Confidence               5689999999999999999999999999999999999999999988888887766655444432 345667789999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ..|..|+.+|.+    ..+-+.|+|...
T Consensus       250 ~ll~~~~~~~~~----~~~~~~~~~l~~  273 (429)
T KOG0595|consen  250 SLLQRNPKDRIS----FEDFFDHPFLAA  273 (429)
T ss_pred             HHHhcCccccCc----hHHhhhhhhccc
Confidence            999999999999    888888988765

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5.1e-55  Score=399.59  Aligned_cols=258  Identities=27%  Similarity=0.419  Sum_probs=219.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.|..+.++|+|+||+||+|+++    .+|+.||||.+...+ .+....+...+|+++|++|+|+|+|.++.+|...+.+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk----~TgqIVAIKkF~Ese-dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrkl   76 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNK----DTGQIVAIKKFVESE-DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKL   76 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccC----CcccEEEEEeeccCC-ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhccee
Confidence            57889999999999999999987    599999999996543 2234556778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      +||+|||+..-|.++ ++.+ .+++...++.++.|++.|+.|+|++++|||||||+||||+..|.+||||||+|+.+..+
T Consensus        77 hLVFE~~dhTvL~eL-e~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~p  154 (396)
T KOG0593|consen   77 HLVFEYCDHTVLHEL-ERYP-NGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAP  154 (396)
T ss_pred             EEEeeecchHHHHHH-Hhcc-CCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCC
Confidence            999999977666554 4443 66899999999999999999999999999999999999999999999999999876521


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .                                                                      .-.+.++.|
T Consensus       155 g----------------------------------------------------------------------d~YTDYVAT  164 (396)
T KOG0593|consen  155 G----------------------------------------------------------------------DNYTDYVAT  164 (396)
T ss_pred             c----------------------------------------------------------------------chhhhhhhh
Confidence            1                                                                      112356889


Q ss_pred             CCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-------------------CCC-
Q 012762          322 HEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-------------------PKE-  380 (457)
Q Consensus       322 ~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-------------------~~~-  380 (457)
                      .+|+|||.+.| ..|+.++||||+||++.||++|++.|++.++.+.+..|+.....+                   |.. 
T Consensus       165 RWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~  244 (396)
T KOG0593|consen  165 RWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPE  244 (396)
T ss_pred             hhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCC
Confidence            99999999998 679999999999999999999999999998887777666543322                   221 


Q ss_pred             ---------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          381 ---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       381 ---------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                               +.++..+.||+.+||..||.+|++    .+|+|.|+||++
T Consensus       245 ~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~s----c~qll~H~yFd~  289 (396)
T KOG0593|consen  245 HPEPLERKYPKISNVLLDLLKKCLKMDPDDRLS----CEQLLHHPYFDG  289 (396)
T ss_pred             CccchhhhcccchHHHHHHHHHHhcCCcccccc----HHHHhcChHHHH
Confidence                     234456889999999999999999    999999999965

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-52  Score=415.24  Aligned_cols=260  Identities=31%  Similarity=0.572  Sum_probs=232.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh--hHHHHHHHHHHHHHHcC-CCCCceEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEMLD-HPFLPTLYATL  155 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~--~~~~~~~~E~~il~~l~-H~nIv~l~~~~  155 (457)
                      ...+.|.+.+.||+|+||+|++|++..    ++..||+|+++++.....  .....+.+|+.+++++. ||||+++++++
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~----t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~   89 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRL----TGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVF   89 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeecc----CCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEE
Confidence            456789999999999999999999873    779999998877633212  34566778999999998 99999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDL  234 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~  234 (457)
                      .....+|||||||.||+|.+++...  +++.|..++.+++||+.||+|||++||+||||||+|||++.+ +++||+|||+
T Consensus        90 ~t~~~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~  167 (370)
T KOG0583|consen   90 ATPTKIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGL  167 (370)
T ss_pred             ecCCeEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccc
Confidence            9999999999999999999999884  889999999999999999999999999999999999999999 9999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                      +..
T Consensus       168 s~~~~~~----------------------------------------------------------------------~~~  177 (370)
T KOG0583|consen  168 SAISPGE----------------------------------------------------------------------DGL  177 (370)
T ss_pred             ccccCCC----------------------------------------------------------------------CCc
Confidence            8655200                                                                      112


Q ss_pred             cccccCCCCccCchhhcCCC-C-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCC-ChHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEG-H-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSV-PGPAKDLI  391 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~-~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll  391 (457)
                      ..+++||+.|+|||++.+.. | +.++||||+||+||.|++|+.||...+....+..+..+.+.+|..  + +.++++|+
T Consensus       178 l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~--~~S~~~~~Li  255 (370)
T KOG0583|consen  178 LKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSY--LLSPEARSLI  255 (370)
T ss_pred             ccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCC--cCCHHHHHHH
Confidence            23578999999999999988 8 589999999999999999999999988888888888888888887  5 99999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+||..||.+|++    +.+|++||||+.
T Consensus       256 ~~mL~~~P~~R~t----~~~i~~h~w~~~  280 (370)
T KOG0583|consen  256 EKMLVPDPSTRIT----LLEILEHPWFQK  280 (370)
T ss_pred             HHHcCCCcccCCC----HHHHhhChhhcc
Confidence            9999999999999    999999999996

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=7.6e-52  Score=408.35  Aligned_cols=278  Identities=36%  Similarity=0.707  Sum_probs=235.3

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||+||+|+++    .+|+.||+|++.+...........+..|+++|+.++||||+++++++...+.+||||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   76 (323)
T cd05571           1 KLLGKGTFGKVILVREK----ATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEY   76 (323)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeC
Confidence            36899999999999976    47889999999876655555566778899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +.+++|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......     
T Consensus        77 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~-----  149 (323)
T cd05571          77 ANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDG-----  149 (323)
T ss_pred             CCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCC-----
Confidence            9999998888764  678999999999999999999999999999999999999999999999999975321100     


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                       .....++||+.|+||
T Consensus       150 -----------------------------------------------------------------~~~~~~~gt~~y~aP  164 (323)
T cd05571         150 -----------------------------------------------------------------ATMKTFCGTPEYLAP  164 (323)
T ss_pred             -----------------------------------------------------------------CcccceecCccccCh
Confidence                                                                             001134699999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC-
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~-  406 (457)
                      |++.+..++.++|||||||++|||++|..||...+.......+......++.  .++.++.+||.+||..||++||+.. 
T Consensus       165 E~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~~~~  242 (323)
T cd05571         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGP  242 (323)
T ss_pred             hhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHccCCHHHcCCCCC
Confidence            9999999999999999999999999999999988777777777766666554  4889999999999999999999321 


Q ss_pred             cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          407 MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                      ..+.++++||||..++|..+.  ...||+.|...+..+.
T Consensus       243 ~~~~~ll~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (323)
T cd05571         243 EDAKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETDT  281 (323)
T ss_pred             CCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcchh
Confidence            129999999999999998774  4556777766555443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-53  Score=393.28  Aligned_cols=292  Identities=36%  Similarity=0.699  Sum_probs=264.7

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|.++++||+|.||+|.+|+-++    +++.||+|+++|.-+........-..|-++|+.++||.+..+.-.
T Consensus       161 ~~~kvTm~dFdfLKvLGkGTFGKVIL~rEKa----t~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYs  236 (516)
T KOG0690|consen  161 RKNKVTMEDFDFLKVLGKGTFGKVILCREKA----TGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYS  236 (516)
T ss_pred             ccceeccchhhHHHHhcCCccceEEEEeecc----cCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhh
Confidence            4456788999999999999999999999885    899999999999888877777777889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      |+..+++|+||||++||.|...+.+.  +.+++...+.+..+|+.||.|||+++||.||||.+|+|++.||++||+|||+
T Consensus       237 FQt~drlCFVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGL  314 (516)
T KOG0690|consen  237 FQTQDRLCFVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGL  314 (516)
T ss_pred             hccCceEEEEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeeccc
Confidence            99999999999999999998777775  7899999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++..-.                                                                      .+..
T Consensus       315 CKE~I~----------------------------------------------------------------------~g~t  324 (516)
T KOG0690|consen  315 CKEEIK----------------------------------------------------------------------YGDT  324 (516)
T ss_pred             chhccc----------------------------------------------------------------------ccce
Confidence            864321                                                                      1223


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ..+|||||.|+|||++....|+.++|.|.+||++|||++|+.||+..+....+.-|+...+++|..  ++++++.|+..+
T Consensus       325 ~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~--ls~eAktLLsGL  402 (516)
T KOG0690|consen  325 TKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRT--LSPEAKTLLSGL  402 (516)
T ss_pred             eccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCcc--CCHHHHHHHHHH
Confidence            447899999999999999999999999999999999999999999999999999999999999986  999999999999


Q ss_pred             hhhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          395 LVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       395 L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      |..||.+|..-. .++.+|.+|+||.+++|...  +...|||.|+-.+..|-+
T Consensus       403 L~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqVtSetDTr  455 (516)
T KOG0690|consen  403 LKKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKKIEPPFKPQVTSETDTR  455 (516)
T ss_pred             hhcChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhccCCCCCCCcccccchh
Confidence            999999998763 57999999999999999754  788999999877666543

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.3e-51  Score=407.74  Aligned_cols=269  Identities=38%  Similarity=0.716  Sum_probs=236.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ....++|.+.+.||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|+.++||||+++++++..
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   89 (329)
T PTZ00263         14 SWKLSDFEMGETLGTGSFGRVRIAKHK----GTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQD   89 (329)
T ss_pred             CCCchheEEEEEEEecCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEc
Confidence            345689999999999999999999987    4788999999988765555556778889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++.+|+||||+.+++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        90 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~  167 (329)
T PTZ00263         90 ENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKK  167 (329)
T ss_pred             CCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceE
Confidence            99999999999999999888764  6789999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ....                                                                         ...
T Consensus       168 ~~~~-------------------------------------------------------------------------~~~  174 (329)
T PTZ00263        168 VPDR-------------------------------------------------------------------------TFT  174 (329)
T ss_pred             cCCC-------------------------------------------------------------------------cce
Confidence            3211                                                                         012


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ..||+.|+|||++.+..++.++|||||||++|||++|..||.+......+..+......++..  ++..+++||.+||+.
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~--~~~~~~~li~~~L~~  252 (329)
T PTZ00263        175 LCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNW--FDGRARDLVKGLLQT  252 (329)
T ss_pred             ecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCC--CCHHHHHHHHHHhhc
Confidence            469999999999999999999999999999999999999999888777777777776665544  888999999999999


Q ss_pred             CCCCCCCC-CcChHHHhcCCCCCCCCchhhh
Q 012762          398 DPTRRMGS-KMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       398 dP~~Rps~-~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      ||.+|++. ...+++|++||||+..+|..+.
T Consensus       253 dP~~R~~~~~~~~~~ll~hp~f~~~~~~~~~  283 (329)
T PTZ00263        253 DHTKRLGTLKGGVADVKNHPYFHGANWDKLY  283 (329)
T ss_pred             CHHHcCCCCCCCHHHHhcCCccCCCCHHHHH
Confidence            99999973 2347999999999999998764

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.6e-51  Score=408.68  Aligned_cols=287  Identities=35%  Similarity=0.676  Sum_probs=245.4

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|.+.+.||+|+||.||+|.++.   ..+..||+|++.+...........+..|+++++.++||||++++++
T Consensus        23 ~~~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~   99 (340)
T PTZ00426         23 RKNKMKYEDFNFIRTLGTGSFGRVILATYKN---EDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGS   99 (340)
T ss_pred             cCCCCChhhcEEEEEEeecCCeEEEEEEEEC---CCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEE
Confidence            4456778899999999999999999998763   2346899999987765555566778889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +..++.+|+||||+.+|+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus       100 ~~~~~~~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~  177 (340)
T PTZ00426        100 FKDESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGF  177 (340)
T ss_pred             EEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCC
Confidence            99999999999999999999998775  5799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       178 a~~~~~~-------------------------------------------------------------------------  184 (340)
T PTZ00426        178 AKVVDTR-------------------------------------------------------------------------  184 (340)
T ss_pred             CeecCCC-------------------------------------------------------------------------
Confidence            7543210                                                                         


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ..+.+||+.|||||++.+..++.++|||||||++|||++|..||.+.+....+..+......+|..  ++..+.++|.+|
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~--~~~~~~~li~~~  262 (340)
T PTZ00426        185 TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKF--LDNNCKHLMKKL  262 (340)
T ss_pred             cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCC--CCHHHHHHHHHH
Confidence            012469999999999999889999999999999999999999999888777788887776666544  889999999999


Q ss_pred             hhhCCCCCCCC-CcChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcc
Q 012762          395 LVKDPTRRMGS-KMGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCR  441 (457)
Q Consensus       395 L~~dP~~Rps~-~~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~  441 (457)
                      |+.||++|++. ...++++++||||++++|..+.  ...+|+.|+.....
T Consensus       263 l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~~~~~~~~~~~p~~~~~~  312 (340)
T PTZ00426        263 LSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNVEVPYKPKYKNVF  312 (340)
T ss_pred             cccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCCc
Confidence            99999999621 1129999999999999998664  45678888765443

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-52  Score=402.90  Aligned_cols=313  Identities=33%  Similarity=0.567  Sum_probs=248.1

Q ss_pred             hhHHHHHHhhhcCCCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh----------
Q 012762           58 PCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR----------  127 (457)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~----------  127 (457)
                      ..|..++................+.+|++++.||+|.||.|-+|++.    .+++.||||++.+......          
T Consensus        73 ~~~~~vket~k~~~~~~~~~~k~lNqy~l~~eiG~G~yGkVkLar~~----~~~~l~AiKil~K~~~~~~~~~~~~~a~~  148 (576)
T KOG0585|consen   73 RSWRRVKETNKIVRYDDDQDRKQLNQYELIKEIGSGQYGKVKLARDE----VDGKLYAIKILPKKELRRQYGFPRQPAMK  148 (576)
T ss_pred             ccccccceeeeeeeecCcccceehhheehhhhhcCCccceEEEEeec----CCCcEEEEEeechhhhhhhcccccccccc
Confidence            33444444433323334455667789999999999999999999987    4889999999988755332          


Q ss_pred             -hHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--CcEEEEEeecCCCChHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Q 012762          128 -NKESRARIEREILEMLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEF  203 (457)
Q Consensus       128 -~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~~~lV~E~~~~~sL~~~~~~~~~~~-~~~~~~~~i~~qi~~~L~y  203 (457)
                       ...+.+++|+.||++|+|||||+|+.+..+.  +.+|||+|||..|.+.+.-   .... +.+.+++.|+++++.||+|
T Consensus       149 ~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p---~d~~els~~~Ar~ylrDvv~GLEY  225 (576)
T KOG0585|consen  149 LMPIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCP---PDKPELSEQQARKYLRDVVLGLEY  225 (576)
T ss_pred             cCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCC---CCcccccHHHHHHHHHHHHHHHHH
Confidence             1235788999999999999999999999764  5899999999999885432   2344 9999999999999999999


Q ss_pred             HHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 012762          204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVP  283 (457)
Q Consensus       204 LH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (457)
                      ||.+|||||||||.|+||+.+|+|||+|||.+.........                                       
T Consensus       226 LH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~---------------------------------------  266 (576)
T KOG0585|consen  226 LHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDE---------------------------------------  266 (576)
T ss_pred             HHhcCeeccccchhheEEcCCCcEEeeccceeeecccCCcc---------------------------------------
Confidence            99999999999999999999999999999997644211000                                       


Q ss_pred             cccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC----CCccchhhhhhHHHHHHhcCCCCCC
Q 012762          284 AVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFK  359 (457)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~----~~~~sDiwSlG~il~elltG~~Pf~  359 (457)
                                                ..+......+|||.|||||.+.+..    .+.+.||||+||+||.|+.|+.||.
T Consensus       267 --------------------------~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~  320 (576)
T KOG0585|consen  267 --------------------------GSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFF  320 (576)
T ss_pred             --------------------------ccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcc
Confidence                                      0000111247999999999998732    3779999999999999999999999


Q ss_pred             CCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCC
Q 012762          360 GIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVT  439 (457)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~  439 (457)
                      +....+.+.+|+...+.+|..+.+.++++|||.+||..||+.|.+    +.+|..|||...-       -.-|..-.+-.
T Consensus       321 ~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~----l~~ik~Hpwvt~~-------g~~~~~s~~~~  389 (576)
T KOG0585|consen  321 DDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRIT----LPDIKLHPWVTRD-------GDSPQSSEPSS  389 (576)
T ss_pred             cchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheee----hhhheecceeccC-------CCCCccCCccc
Confidence            999999999999999999999889999999999999999999999    9999999997642       11123334445


Q ss_pred             ccccccccCCCCCC
Q 012762          440 CRDLTTTNSSIDNS  453 (457)
Q Consensus       440 ~~~~~~~~~~~~~~  453 (457)
                      |..+..+++.++|+
T Consensus       390 c~~v~v~eeev~~s  403 (576)
T KOG0585|consen  390 CSRVEVTEEEVNNS  403 (576)
T ss_pred             ceeeeeeccccccc
Confidence            55555555555554

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3.7e-51  Score=409.92  Aligned_cols=315  Identities=29%  Similarity=0.518  Sum_probs=239.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+..|++++..++|+||+++++.+.+...+
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~   76 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKK----DTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNL   76 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEEC----CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeE
Confidence            47999999999999999999876    47889999999887655555667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||+||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        77 ~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~  154 (363)
T cd05628          77 YLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKA  154 (363)
T ss_pred             EEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccc
Confidence            9999999999999988765  67999999999999999999999999999999999999999999999999998765422


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..........     ...+....                      ......        ..................+||
T Consensus       155 ~~~~~~~~~~-----~~~~~~~~----------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~Gt  199 (363)
T cd05628         155 HRTEFYRNLN-----HSLPSDFT----------------------FQNMNS--------KRKAETWKRNRRQLAFSTVGT  199 (363)
T ss_pred             cccccccccc-----cccccccc----------------------cccccc--------ccccchhhhccccccccccCC
Confidence            1110000000     00000000                      000000        000000000011112346899


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+......+.+++..  ...+|....++++++++|.+|+. +|
T Consensus       200 ~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~~  278 (363)
T cd05628         200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCC-EW  278 (363)
T ss_pred             ccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcC-Ch
Confidence            9999999999999999999999999999999999999988777777777653  34455555578999999999875 55


Q ss_pred             CC---CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          400 TR---RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       400 ~~---Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      .+   ||+    ++||++||||++++|..++...+++-++..+..+
T Consensus       279 ~~r~~r~~----~~ei~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  320 (363)
T cd05628         279 EHRIGAPG----VEEIKTNPFFEGVDWEHIRERPAAIPIEIKSIDD  320 (363)
T ss_pred             hhcCCCCC----HHHHhCCCCCCCCCHHHHHhCCCCCCccCCCcch
Confidence            54   577    9999999999999999886654444333333333

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.8e-54  Score=390.27  Aligned_cols=252  Identities=26%  Similarity=0.392  Sum_probs=218.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE-EEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA-TLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~-~~~  156 (457)
                      ...+.+|+++++||.|+||.||++.+.    .+|..||.|.+.-. ..+....+....|+.+|++|+|||||++++ .|.
T Consensus        15 ~~~l~~y~Il~~IG~GsFg~vykv~~~----~~g~l~a~K~i~f~-~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~   89 (375)
T KOG0591|consen   15 QKTLADYQILKKIGRGSFGEVYKVQCL----LDGKLVALKKIQFG-MMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFI   89 (375)
T ss_pred             cccHHHHHHHHHHcCCcchheEEeeec----cCcchhhhhhcchh-hccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhh
Confidence            445678999999999999999999987    48999999999844 344555666777999999999999999999 555


Q ss_pred             cCCc-EEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHH--cC--ceeecCCCCCeEEccCCCEEE
Q 012762          157 CPRW-SCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHM--MG--IIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       157 ~~~~-~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~--~~--iiHrDIKp~NIll~~~~~vkl  229 (457)
                      .+.. ++||||||.+|+|..+++..  ..+.++|..++.++.|+|.||..+|.  .+  |+||||||.||+|+..|.|||
T Consensus        90 ~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKL  169 (375)
T KOG0591|consen   90 EDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKL  169 (375)
T ss_pred             ccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceee
Confidence            5554 89999999999999998763  34679999999999999999999998  45  999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||+++.+......+                                                                
T Consensus       170 GDfGL~r~l~s~~tfA----------------------------------------------------------------  185 (375)
T KOG0591|consen  170 GDFGLGRFLSSKTTFA----------------------------------------------------------------  185 (375)
T ss_pred             ccchhHhHhcchhHHH----------------------------------------------------------------
Confidence            9999998876544322                                                                


Q ss_pred             CCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                            .+++|||.||+||.+.+.+|+.++||||+||++|||+.-+.||.+.+-.+...+|..+.+..-.....+.++..
T Consensus       186 ------~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS~~l~~  259 (375)
T KOG0591|consen  186 ------HSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYSTDLRE  259 (375)
T ss_pred             ------HhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhhhHHHH
Confidence                  25789999999999999999999999999999999999999999997777888888776543222457889999


Q ss_pred             HHHHHhhhCCCCCCC
Q 012762          390 LIAQLLVKDPTRRMG  404 (457)
Q Consensus       390 ll~~~L~~dP~~Rps  404 (457)
                      ||..|+..||+.||+
T Consensus       260 li~~ci~vd~~~RP~  274 (375)
T KOG0591|consen  260 LINMCIAVDPEQRPD  274 (375)
T ss_pred             HHHHHccCCcccCCC
Confidence            999999999999998

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-52  Score=416.35  Aligned_cols=259  Identities=27%  Similarity=0.505  Sum_probs=236.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .+-|++.+.||.|+.|.|-+|++.    .+|+.+|||++.+...........+.+|+-||+.+.||||+++|+++.+..+
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~----~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~   86 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHA----ETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQH   86 (786)
T ss_pred             ccceeccccccCCCCceehhhhcc----cccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCce
Confidence            456999999999999999999877    5999999999998855566667788889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|+|+||++||.|++++-+.  +++++.+++++++||+.|+.|+|..+|+||||||+|+||+..+++||+|||+|-...+
T Consensus        87 lylvlEyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   87 LYLVLEYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             EEEEEEecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            99999999999999998876  8899999999999999999999999999999999999999999999999999743321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                       -..+.||
T Consensus       165 gk-----------------------------------------------------------------------lLeTSCG  173 (786)
T KOG0588|consen  165 GK-----------------------------------------------------------------------LLETSCG  173 (786)
T ss_pred             Cc-----------------------------------------------------------------------cccccCC
Confidence            11                                                                       1124589


Q ss_pred             CCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ++.|.|||++.|.+| +.++||||.|||||.||+|..||++.+....+.++..+.+.+|..  ++.++++||.+||..||
T Consensus       174 SPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~--Is~eaQdLLr~ml~VDp  251 (786)
T KOG0588|consen  174 SPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSN--ISSEAQDLLRRMLDVDP  251 (786)
T ss_pred             CcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCc--CCHHHHHHHHHHhccCc
Confidence            999999999999998 889999999999999999999999999899999999999999965  99999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ++|.|    .+||++|||+.+..
T Consensus       252 ~~RiT----~~eI~kHP~l~g~~  270 (786)
T KOG0588|consen  252 STRIT----TEEILKHPFLSGYT  270 (786)
T ss_pred             ccccc----HHHHhhCchhhcCC
Confidence            99999    99999999998743

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.6e-51  Score=397.33  Aligned_cols=279  Identities=32%  Similarity=0.573  Sum_probs=231.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |++.+.||+|+||+||+|.++    .+++.||+|++.+...........+.+|+++|+.++|+||+++++++..++..|+
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~l   77 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCL   77 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEe----cCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEE
Confidence            788999999999999999987    3788999999987665444445567789999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+++|+|..++.......+++..+..++.||+.||+|||+.||+||||||+|||++.++.++|+|||++........
T Consensus        78 v~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05631          78 VLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET  157 (285)
T ss_pred             EEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe
Confidence            99999999998877665445799999999999999999999999999999999999999999999999999754321100


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                             .....||..
T Consensus       158 -----------------------------------------------------------------------~~~~~g~~~  166 (285)
T cd05631         158 -----------------------------------------------------------------------VRGRVGTVG  166 (285)
T ss_pred             -----------------------------------------------------------------------ecCCCCCCC
Confidence                                                                                   012358999


Q ss_pred             ccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh--cccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       324 y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |+|||++.+..++.++|||||||++|||++|+.||.+.........+..  ..........++.++.+|+.+||..||++
T Consensus       167 y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~  246 (285)
T cd05631         167 YMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKE  246 (285)
T ss_pred             ccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHH
Confidence            9999999999999999999999999999999999987654322222111  11122223458899999999999999999


Q ss_pred             CCCCCc-ChHHHhcCCCCCCCCchhhhcc--CCCCCCCC
Q 012762          402 RMGSKM-GATAIKRHQFFNGVNWALLRCA--KPPFIPRP  437 (457)
Q Consensus       402 Rps~~~-~~~~ll~hp~f~~~~~~~~~~~--~~~~~~~~  437 (457)
                      ||+... .++++++||||++++|..+...  .|||.|.+
T Consensus       247 R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05631         247 RLGCRGNGAAGVKQHPIFKNINFKRLEANMLEPPFCPDP  285 (285)
T ss_pred             hcCCCCCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCCC
Confidence            997432 3899999999999999988654  78999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-51  Score=399.59  Aligned_cols=274  Identities=42%  Similarity=0.740  Sum_probs=236.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||+|++.............+.+|+++|+.++||||+++++++.+.+.+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   76 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDR----ISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFL   76 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEc----CCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeE
Confidence            47999999999999999999986    37889999999876554444566788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++......
T Consensus        77 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~  154 (291)
T cd05612          77 YMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR  154 (291)
T ss_pred             EEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCC
Confidence            9999999999999988765  57899999999999999999999999999999999999999999999999997543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                               ....+||
T Consensus       155 -------------------------------------------------------------------------~~~~~gt  161 (291)
T cd05612         155 -------------------------------------------------------------------------TWTLCGT  161 (291)
T ss_pred             -------------------------------------------------------------------------cccccCC
Confidence                                                                                     0123589


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......++..  ++..+++||.+||+.||.+
T Consensus       162 ~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~li~~~l~~dp~~  239 (291)
T cd05612         162 PEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRH--LDLYAKDLIKKLLVVDRTR  239 (291)
T ss_pred             hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCcc--CCHHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999999999988777788887776666544  7889999999999999999


Q ss_pred             CCCC-CcChHHHhcCCCCCCCCchhhh--ccCCCCCCC
Q 012762          402 RMGS-KMGATAIKRHQFFNGVNWALLR--CAKPPFIPR  436 (457)
Q Consensus       402 Rps~-~~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~  436 (457)
                      |++. ...++++++||||+.++|..+.  ...|+++|.
T Consensus       240 R~~~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~p~  277 (291)
T cd05612         240 RLGNMKNGADDVKNHRWFKSVDWDDVPQRKLKPPIVPK  277 (291)
T ss_pred             ccCCccCCHHHHhcCccccCCCHHHHhcCCCCCCEeCC
Confidence            9952 2349999999999999998653  344555553

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-51  Score=412.03  Aligned_cols=327  Identities=33%  Similarity=0.577  Sum_probs=244.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|+++++||+|+||+||+|.++    .+++.||||++.+...........+.+|+++++.++||||+++++++.+++++
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~   76 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKK----DTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYL   76 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEEC----CCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCee
Confidence            47999999999999999999887    47889999999877655555667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ||||||++||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        77 ~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~  154 (377)
T cd05629          77 YLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQ  154 (377)
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccc
Confidence            9999999999999888764  67999999999999999999999999999999999999999999999999998654321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ........               ...............      .....  .......+..................+||
T Consensus       155 ~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  211 (377)
T cd05629         155 HDSAYYQK---------------LLQGKSNKNRIDNRN------SVAVD--SINLTMSSKDQIATWKKNRRLMAYSTVGT  211 (377)
T ss_pred             cccccccc---------------ccccccccccccccc------ccccc--cccccccchhhhhhhhhcccccccccCCC
Confidence            11100000               000000000000000      00000  00000000000000000011111235799


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh--cccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..++.++|||||||++|||++|.+||.+......+..+..  ..+.++....++.++.+||.+||. +|
T Consensus       212 ~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~  290 (377)
T cd05629         212 PDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NA  290 (377)
T ss_pred             ccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CH
Confidence            999999999999999999999999999999999999988776666666654  234445545678899999999997 77


Q ss_pred             CCCC---CCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          400 TRRM---GSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       400 ~~Rp---s~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      .+|+   +    +.++++||||++++|..++...+|++|......+
T Consensus       291 ~~r~~r~~----~~~~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (377)
T cd05629         291 ENRLGRGG----AHEIKSHPFFRGVDWDTIRQIRAPFIPQLKSITD  332 (377)
T ss_pred             hhcCCCCC----HHHHhcCCCcCCCCHHHHccCCCCcccCCCCccc
Confidence            7765   7    9999999999999999999999999987644433

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.7e-51  Score=402.83  Aligned_cols=277  Identities=35%  Similarity=0.574  Sum_probs=239.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||.||+|+++    .+++.||+|++.+...........+..|+++|+.++||||+++++++...+..
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~   76 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKK----DTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYL   76 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEE
Confidence            47999999999999999999987    47889999999887655445566788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ||||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..... 
T Consensus        77 ~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-  153 (333)
T cd05600          77 YLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-  153 (333)
T ss_pred             EEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc-
Confidence            9999999999999998764  5789999999999999999999999999999999999999999999999999754321 


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                              .....+||
T Consensus       154 ------------------------------------------------------------------------~~~~~~gt  161 (333)
T cd05600         154 ------------------------------------------------------------------------YANSVVGS  161 (333)
T ss_pred             ------------------------------------------------------------------------ccCCcccC
Confidence                                                                                    01134699


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCC----CCCChHHHHHHHHHh
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKE----PSVPGPAKDLIAQLL  395 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~ll~~~L  395 (457)
                      +.|+|||++.+..++.++|||||||++|||++|..||.+.+..+....+....  +..+..    ..+++++.+||.+||
T Consensus       162 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l  241 (333)
T cd05600         162 PDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLI  241 (333)
T ss_pred             ccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999877666655554322  222222    246889999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCcc
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCR  441 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~  441 (457)
                      ..+|.+||+    +.++++||||+.++|..+....||++|......
T Consensus       242 ~~~~~rr~s----~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (333)
T cd05600         242 NDPSRRFGS----LEDIKNHPFFKEVDWNELRELKPPFVPELESEI  283 (333)
T ss_pred             hChhhhcCC----HHHHHhCcccCCCCHHHHhhCCCCCCCCCCCcc
Confidence            999999999    999999999999999999988999998765443

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-53  Score=406.18  Aligned_cols=258  Identities=29%  Similarity=0.462  Sum_probs=222.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~  158 (457)
                      ..++|.++++||.|+||.||+|..+    .+|..||||.++++-. ... +..-.+|+..|++|+ ||||+++.+++.+.
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~----~~~~~VAIK~MK~Kf~-s~e-e~~nLREvksL~kln~hpniikL~Evi~d~   81 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSK----ETGELVAIKKMKKKFY-SWE-ECMNLREVKSLRKLNPHPNIIKLKEVIRDN   81 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeec----CCCceeeHHHHHhhhc-cHH-HHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Confidence            4568999999999999999999876    4888999999976543 322 233456999999998 99999999999888


Q ss_pred             C-cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 R-WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~-~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      + .+|+||||| ..+|+++++.+ ++.|++..++.|+.||++||+|+|.+|+.||||||+|||+.....+||+|||+|+.
T Consensus        82 ~~~L~fVfE~M-d~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARe  159 (538)
T KOG0661|consen   82 DRILYFVFEFM-DCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLARE  159 (538)
T ss_pred             CceEeeeHHhh-hhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccc
Confidence            7 999999999 88999999987 78999999999999999999999999999999999999999888999999999987


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                       .+.
T Consensus       160 v~SkpP-----------------------------------------------------------------------YTe  168 (538)
T KOG0661|consen  160 VRSKPP-----------------------------------------------------------------------YTE  168 (538)
T ss_pred             cccCCC-----------------------------------------------------------------------cch
Confidence            653322                                                                       224


Q ss_pred             ccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-------------------ccCC
Q 012762          318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-------------------ALEF  377 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-------------------~~~~  377 (457)
                      ++.|.+|+|||++.... |+.++|||++|||++|+++-++.|.|.++.+.+.+|..-                   .+++
T Consensus       169 YVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~  248 (538)
T KOG0661|consen  169 YVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRF  248 (538)
T ss_pred             hhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCC
Confidence            67899999999997665 899999999999999999999999999888777776642                   2233


Q ss_pred             CCC---------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          378 PKE---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       378 ~~~---------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |..         +.++.++.+||.+||.+||.+|||    +.|+|+||||+.
T Consensus       249 P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpT----A~~al~~pffq~  296 (538)
T KOG0661|consen  249 PQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPT----ASQALQHPFFQV  296 (538)
T ss_pred             CcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCcc----HHHHhcCccccc
Confidence            321         335678999999999999999999    999999999986

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-51  Score=392.28  Aligned_cols=271  Identities=27%  Similarity=0.390  Sum_probs=235.8

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+....++|.+..+||.|..++||+|++.    ..+..||||+++..+...  ..+.+++|+..|+.++||||++++..
T Consensus        19 ~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~----p~~e~VAIK~inLEkc~~--~ld~l~kE~~~msl~~HPNIv~~~~s   92 (516)
T KOG0582|consen   19 KEFPLNAKDYELQEVIGVGASAVVYLARCI----PTNEVVAIKIINLEKCNN--DLDALRKEVQTMSLIDHPNIVTYHCS   92 (516)
T ss_pred             ccCCCCccceeEEEEEeccceeEeeeeeec----ccCCEEEEEEeehhhhhh--hHHHHHHHHHHhhhcCCCCcceEEEE
Confidence            446677889999999999999999999987    477999999999886643  36788999999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      |..+..+|+||.||.+|++.++++.....++.|..+..+++++++||.|||.+|.||||||+.||||+.+|.|||+|||.
T Consensus        93 Fvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgv  172 (516)
T KOG0582|consen   93 FVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGV  172 (516)
T ss_pred             EEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCcee
Confidence            99999999999999999999999988778899999999999999999999999999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +..+.....                                                                  ....+
T Consensus       173 sa~l~~~G~------------------------------------------------------------------R~~~r  186 (516)
T KOG0582|consen  173 SASLFDSGD------------------------------------------------------------------RQVTR  186 (516)
T ss_pred             eeeecccCc------------------------------------------------------------------eeeEe
Confidence            755432110                                                                  00112


Q ss_pred             cccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--------CCCC
Q 012762          315 SMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--------PSVP  384 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--------~~~~  384 (457)
                      ..+++||++|||||++..  .+|+.|+||||||++..||.+|..||......+++...+.+....+..        ..++
T Consensus       187 f~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~  266 (516)
T KOG0582|consen  187 FNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFS  266 (516)
T ss_pred             eccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhc
Confidence            246799999999999643  469999999999999999999999999998888888877776653332        2345


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ..++.++..||+.||.+||+    +.++|+|+||+..
T Consensus       267 ksf~e~i~~CL~kDP~kRpt----AskLlkh~FFk~~  299 (516)
T KOG0582|consen  267 KSFREMIALCLVKDPSKRPT----ASKLLKHAFFKKA  299 (516)
T ss_pred             HHHHHHHHHHhhcCcccCCC----HHHHhccHHHhhc
Confidence            57999999999999999999    9999999999874

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-52  Score=370.94  Aligned_cols=263  Identities=33%  Similarity=0.583  Sum_probs=243.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .....+++|.+.+.||.|.||.||+|+.+    +++-.||+||+-|..+.......++++|++|...|+||||+++|++|
T Consensus        16 ~~~~~l~dfeigr~LgkgkFG~vYlarek----ks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~f   91 (281)
T KOG0580|consen   16 TKTWTLDDFEIGRPLGKGKFGNVYLAREK----KSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYF   91 (281)
T ss_pred             ccccchhhccccccccCCccccEeEeeec----cCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhhe
Confidence            34567789999999999999999999977    47889999999999888888889999999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+...+||++||..+|+|+..+.......+++.....++.|++.||.|+|.++||||||||+|+|++..|.+||+|||-+
T Consensus        92 hd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGws  171 (281)
T KOG0580|consen   92 HDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWS  171 (281)
T ss_pred             eccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCce
Confidence            99999999999999999999999777789999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ....                                                                        ..+.
T Consensus       172 V~~p------------------------------------------------------------------------~~kR  179 (281)
T KOG0580|consen  172 VHAP------------------------------------------------------------------------SNKR  179 (281)
T ss_pred             eecC------------------------------------------------------------------------CCCc
Confidence            4332                                                                        2233


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      .++|||..|.+||...+..++..+|+|++|+++||++.|.+||......+.+.+|....+.+|.  .++.++.|+|.+||
T Consensus       180 ~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~--~is~~a~dlI~~ll  257 (281)
T KOG0580|consen  180 KTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPS--TISGGAADLISRLL  257 (281)
T ss_pred             eeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCc--ccChhHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999999999999999999888884  49999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ..+|.+|..    +.|+++|||...
T Consensus       258 ~~~p~~r~~----l~~v~~hpwI~a  278 (281)
T KOG0580|consen  258 VKNPIERLA----LTEVMDHPWIVA  278 (281)
T ss_pred             ccCcccccc----HHHHhhhHHHHh
Confidence            999999999    999999999753

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-50  Score=405.52  Aligned_cols=321  Identities=33%  Similarity=0.602  Sum_probs=244.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|+++    .+++.||||++.+...........+..|+++|+.++|+||+++++++..++.+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~   76 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKK----DTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYL   76 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeE
Confidence            47999999999999999999987    47889999999877655555566778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||.||+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.++|+|||++......
T Consensus        77 ~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  154 (364)
T cd05599          77 YLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKS  154 (364)
T ss_pred             EEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccc
Confidence            9999999999999988764  56999999999999999999999999999999999999999999999999998654321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ........               ............        .+.......         ..............+.+||
T Consensus       155 ~~~~~~~~---------------~~~~~~~~~~~~--------~~~~~~~~~---------~~~~~~~~~~~~~~~~~gt  202 (364)
T cd05599         155 HRTEFYRI---------------LSHALPSNFLDF--------ISKPMSSKR---------KAETWKRNRRALAYSTVGT  202 (364)
T ss_pred             cccccccc---------------cccccccccccc--------ccccccccc---------cccchhhcccccccccccC
Confidence            11000000               000000000000        000000000         0000000011122245799


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..++.++|||||||++|||++|..||.+.........++...  +.++....+++++++||.+||. +|
T Consensus       203 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p  281 (364)
T cd05599         203 PDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EA  281 (364)
T ss_pred             ccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CH
Confidence            99999999999999999999999999999999999999887776666665533  3344444578999999999996 99


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      .+|++. ..+.++++||||++++|..+....++++|......|
T Consensus       282 ~~R~~~-~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (364)
T cd05599         282 ERRLGN-NGVNEIKSHPFFKGVDWEHIRERPAPIIPELKSITD  323 (364)
T ss_pred             hhcCCC-CCHHHHhcCCCcCCCCHHHHhhcCCCCCCCCCCchh
Confidence            999963 349999999999999999888888888876554443

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-53  Score=378.05  Aligned_cols=258  Identities=28%  Similarity=0.487  Sum_probs=230.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      -+.|.+.++||+|.|++||+|.++    .+|+.||+|+++...+... ..+.+.+|++|.++|+|||||++.+.+.....
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~----~tg~~fa~kiin~~k~~~~-~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~   84 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHK----TTGLEFAAKIINTKKLSAR-DFQKLEREARICRKLQHPNIVRLHDSIQEESF   84 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhc----cchHHHHHHHhhhhhhccc-cHHHHHHHHHHHHhcCCCcEeehhhhhcccce
Confidence            357999999999999999988765    6899999999998877665 56677889999999999999999999999999


Q ss_pred             EEEEEeecCCCChH-HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEeccCCCc
Q 012762          161 SCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDFDLSL  236 (457)
Q Consensus       161 ~~lV~E~~~~~sL~-~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DFG~s~  236 (457)
                      .|||+|++.|++|. ++.++   -.++|..+-.+++||+++|.|+|.+||||||+||+|+|+.+.   .-+||+|||++.
T Consensus        85 ~ylvFe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi  161 (355)
T KOG0033|consen   85 HYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAI  161 (355)
T ss_pred             eEEEEecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEE
Confidence            99999999999994 55555   568999999999999999999999999999999999999743   469999999987


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                       ..
T Consensus       162 ~l~~g~~-----------------------------------------------------------------------~~  170 (355)
T KOG0033|consen  162 EVNDGEA-----------------------------------------------------------------------WH  170 (355)
T ss_pred             EeCCccc-----------------------------------------------------------------------cc
Confidence            6542111                                                                       12


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~  394 (457)
                      .++|||.|||||+++..+|+..+|||+.|||||-|+.|++||++.+....+++|+.+.+.++.  ++.+++++++|+++|
T Consensus       171 G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrM  250 (355)
T KOG0033|consen  171 GFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRM  250 (355)
T ss_pred             cccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999888764  678999999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |..||.+|.|    +.|.|+|||....
T Consensus       251 L~~dP~kRIt----a~EAL~HpWi~~r  273 (355)
T KOG0033|consen  251 LTVNPKKRIT----ADEALKHPWICNR  273 (355)
T ss_pred             hccChhhhcc----HHHHhCCchhcch
Confidence            9999999999    9999999999873

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-52  Score=409.59  Aligned_cols=257  Identities=26%  Similarity=0.415  Sum_probs=224.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ....|....+||+|+.|.||.|...    .+++.||||.+.....   ...+.+.+|+.+|+..+|+|||.+++.|...+
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~----~~~~~VaiK~m~l~~Q---~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~d  343 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKI----STKQEVAIKRMDLRKQ---PKKELLLNEILVMRDLHHPNIVNFLDSYLVGD  343 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeec----cCCceEEEEEEEeccC---CchhhhHHHHHHHHhccchHHHHHHHHhcccc
Confidence            3456888999999999999999877    4788899999987644   45566788999999999999999999998889


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+++||||++||+|.+++..   ..++|.++..++++++.||+|||.+||+|||||.+|||++.+|.+||+||||+..+.
T Consensus       344 eLWVVMEym~ggsLTDvVt~---~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~  420 (550)
T KOG0578|consen  344 ELWVVMEYMEGGSLTDVVTK---TRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQIS  420 (550)
T ss_pred             eeEEEEeecCCCchhhhhhc---ccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccc
Confidence            99999999999999998877   569999999999999999999999999999999999999999999999999986554


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      +..+++
T Consensus       421 ~~~~----------------------------------------------------------------------KR~TmV  430 (550)
T KOG0578|consen  421 EEQS----------------------------------------------------------------------KRSTMV  430 (550)
T ss_pred             cccC----------------------------------------------------------------------cccccc
Confidence            2211                                                                      233678


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH-HHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ||++|||||+.....|+.++||||||++++||+-|++||........+.. .-.+...+.....++..+++||.+||+.|
T Consensus       431 GTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~d  510 (550)
T KOG0578|consen  431 GTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVD  510 (550)
T ss_pred             CCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999986544433333 33455566667789999999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +++|++    +.+||+||||+.
T Consensus       511 v~~Ras----A~eLL~HpFl~~  528 (550)
T KOG0578|consen  511 VEQRAS----AKELLEHPFLKM  528 (550)
T ss_pred             hhcCCC----HHHHhcChhhhh
Confidence            999999    999999999953

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-50  Score=403.50  Aligned_cols=310  Identities=37%  Similarity=0.681  Sum_probs=249.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|.+.+.||+|+||+||+|++.    .+++.||+|++.+...........+..|+++|+.++|+||+++++++.+++++
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   76 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDK----DTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHL   76 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEEC----CCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeE
Confidence            47999999999999999999986    37889999999887665556667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  154 (350)
T cd05573          77 YLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKA  154 (350)
T ss_pred             EEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCccc
Confidence            9999999999999998775  67999999999999999999999999999999999999999999999999998765432


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...........          .   .....                       ....     ................||
T Consensus       155 ~~~~~~~~~~~----------~---~~~~~-----------------------~~~~-----~~~~~~~~~~~~~~~~gt  193 (350)
T cd05573         155 KDREYYLNDSH----------N---LLFRD-----------------------NVLV-----RRRDHKQRRVRANSTVGT  193 (350)
T ss_pred             Ccccccccccc----------c---ccccc-----------------------cccc-----cccccccccccccccccC
Confidence            21100000000          0   00000                       0000     000000001112245699


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh--cccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||...........+..  ....++....+++++.+||.+||. ||
T Consensus       194 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp  272 (350)
T cd05573         194 PDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DP  272 (350)
T ss_pred             ccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-Ch
Confidence            999999999999999999999999999999999999998887777777776  555666666679999999999997 99


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      .+|++.   +.++++||||+.++|.......||++|......+
T Consensus       273 ~~R~~s---~~~ll~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (350)
T cd05573         273 EDRLGS---FEEIKSHPFFKGIDWENLRETKPPFVPELSSPLD  312 (350)
T ss_pred             hhcCCC---HHHHhcCCCcCCCCHHHHhhCCCCcCCCCCCchh
Confidence            999996   9999999999999999998888888886555443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.4e-52  Score=407.70  Aligned_cols=255  Identities=28%  Similarity=0.493  Sum_probs=230.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|.+.+.||+|+||+||+|+-|    ++.+.||+|.+.|..- .+.....+++|++|++.|+|||||.++++|+...++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK----~t~~~vAik~i~K~gr-~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~   76 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRK----YTIQVVAIKFIDKSGR-NEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHL   76 (808)
T ss_pred             cchhHHHHhcCCccceeeecccc----cceeEEEEEEehhcCC-chHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceE
Confidence            57999999999999999999866    5889999999988653 344567788999999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+|+|||.| +|..++...  +.++|+.++.++.|++.||.|||+.+|+|||+||.|||+...|.+|+||||+++.+...
T Consensus        77 ~vVte~a~g-~L~~il~~d--~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~  153 (808)
T KOG0597|consen   77 WVVTEYAVG-DLFTILEQD--GKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN  153 (808)
T ss_pred             EEEehhhhh-hHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccC
Confidence            999999965 999999885  88999999999999999999999999999999999999999999999999999877643


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      +...                                                                      ..+-||
T Consensus       154 t~vl----------------------------------------------------------------------tsikGt  163 (808)
T KOG0597|consen  154 TSVL----------------------------------------------------------------------TSIKGT  163 (808)
T ss_pred             ceee----------------------------------------------------------------------eeccCc
Confidence            3211                                                                      134599


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |.|||||...+.+|+..+|+||||||+|||++|++||...+-.+....|+.....+|.  ..+.++.+|++.+|..||..
T Consensus       164 PlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~--~~S~~f~nfl~gLL~kdP~~  241 (808)
T KOG0597|consen  164 PLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPS--TASSSFVNFLQGLLIKDPAQ  241 (808)
T ss_pred             ccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcc--cccHHHHHHHHHHhhcChhh
Confidence            9999999999999999999999999999999999999988877788888877777666  48899999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~  420 (457)
                      |.+    ..+++.|||.++
T Consensus       242 Rlt----W~~Ll~HpF~k~  256 (808)
T KOG0597|consen  242 RLT----WTDLLGHPFWKG  256 (808)
T ss_pred             ccc----HHHHhcChHHhh
Confidence            999    999999999886

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.7e-50  Score=398.30  Aligned_cols=279  Identities=37%  Similarity=0.713  Sum_probs=235.6

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|.+++..+ +||||+++++++...+.+|+|||
T Consensus         1 ~~lg~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~E   76 (320)
T cd05590           1 RVLGKGSFGKVMLARLK----ESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVME   76 (320)
T ss_pred             CeeeeCCCeEEEEEEEc----CCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEc
Confidence            36899999999999987    47889999999876554555566677788888876 79999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 y~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~----  150 (320)
T cd05590          77 FVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNG----  150 (320)
T ss_pred             CCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCC----
Confidence            99999999888764  679999999999999999999999999999999999999999999999999975321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .......||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (320)
T cd05590         151 ------------------------------------------------------------------KTTSTFCGTPDYIA  164 (320)
T ss_pred             ------------------------------------------------------------------CcccccccCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|+.||.+......+..+......++.  .++.++.++|.+||+.||++|++..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~L~~dP~~R~~~~  242 (320)
T cd05590         165 PEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPT--WLSQDAVDILKAFMTKNPTMRLGSL  242 (320)
T ss_pred             HHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHcccCHHHCCCCC
Confidence            99999999999999999999999999999999998888788877776655554  3889999999999999999999931


Q ss_pred             c--ChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          407 M--GATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       407 ~--~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      .  ..+++++||||+.++|..+  +...||+.|+.....+.+
T Consensus       243 ~~~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
T cd05590         243 TLGGEEAILRHPFFKELDWEKLNRRQIEPPFRPRIKSREDVS  284 (320)
T ss_pred             CCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcchhh
Confidence            1  1289999999999999776  356788888876655544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=4e-50  Score=404.31  Aligned_cols=322  Identities=30%  Similarity=0.528  Sum_probs=240.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|+++++||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|+.++|+||+++++.+..++.+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~   76 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKV----DTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNL   76 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEEC----CCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEE
Confidence            47999999999999999999976    47889999999876655555667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||++|+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~  154 (376)
T cd05598          77 YFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (376)
T ss_pred             EEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccc
Confidence            9999999999999998764  67899999999999999999999999999999999999999999999999998544211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .........     ........  ......     ....    .+......++           ............++||
T Consensus       155 ~~~~~~~~~-----~~~~~~~~--~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~gt  207 (376)
T cd05598         155 HDSKYYQKG-----DHHRQDSM--EPSEEW-----SEID----RCRLKPLERR-----------RKRQHQRCLAHSLVGT  207 (376)
T ss_pred             ccccccccc-----cccccccc--cccccc-----cccc----cccccchhhh-----------hhhhcccccccccCCC
Confidence            111000000     00000000  000000     0000    0000000000           0000011112346899


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|||||++.+..++.++|||||||++|||++|+.||.+.........+...  ....+....++.++.++|.+|+ .+|
T Consensus       208 ~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p  286 (376)
T cd05598         208 PNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGA  286 (376)
T ss_pred             ccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCH
Confidence            9999999999999999999999999999999999999987766665555443  2334444568899999999976 599


Q ss_pred             CCCC---CCCcChHHHhcCCCCCCCCchhh-hccCCCCCCCCCCcc
Q 012762          400 TRRM---GSKMGATAIKRHQFFNGVNWALL-RCAKPPFIPRPVTCR  441 (457)
Q Consensus       400 ~~Rp---s~~~~~~~ll~hp~f~~~~~~~~-~~~~~~~~~~~~~~~  441 (457)
                      .+|+   +    +.++++||||++++|..+ ....+|.+|+.....
T Consensus       287 ~~R~~~~t----~~ell~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (376)
T cd05598         287 EDRLGKNG----ADEIKAHPFFKGIDFASLIRRQKAPYIPKITHPT  328 (376)
T ss_pred             hhcCCCCC----HHHHhCCCCcCCCCHHHHhhcCCCCCCCcCCCcc
Confidence            9999   7    999999999999999877 566677777654433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.4e-50  Score=405.50  Aligned_cols=323  Identities=29%  Similarity=0.530  Sum_probs=237.9

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|+++++||+|+||+||+|.++    .+++.||+|++.+...........+..|+++|+.++|+||+++++++.+.+++|
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~----~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~   77 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKV----DTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLY   77 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEE
Confidence            6899999999999999999876    478899999998876666666778889999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||++||+|.+++...  ..+++..++.++.||+.||+|||+.||+||||||+||||+.++.+||+|||++.......
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~  155 (381)
T cd05626          78 FVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTH  155 (381)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccc
Confidence            999999999999988765  569999999999999999999999999999999999999999999999999986543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..........-.........             .....    ..+.....     ....... ...........+++||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~----~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~gt~  212 (381)
T cd05626         156 NSKYYQKGSHIRQDSMEPSD-------------LWDDV----SNCRCGDR-----LKTLEQR-ATKQHQRCLAHSLVGTP  212 (381)
T ss_pred             ccccccccccccccccCccc-------------ccccc----cccccccc-----cchhhcc-ccccccccccccccCCc
Confidence            11000000000000000000             00000    00000000     0000000 00000111123568999


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhh--C
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVK--D  398 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~--d  398 (457)
                      .|+|||++.+..++.++|||||||++|||++|..||...........++..  ....+....++.++.+||.+||..  +
T Consensus       213 ~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~  292 (381)
T cd05626         213 NYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEE  292 (381)
T ss_pred             cccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCccc
Confidence            999999999989999999999999999999999999987766666665542  344555556889999999996654  5


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCCCchh-hhccCCCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGVNWAL-LRCAKPPFIPRPV  438 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~~~~~-~~~~~~~~~~~~~  438 (457)
                      +..|++    +.+|++||||+.++|.. ++...+|++|...
T Consensus       293 ~~~R~~----~~~~l~hp~f~~~~~~~~~~~~~~~~~p~~~  329 (381)
T cd05626         293 RLGRNG----ADDIKAHPFFSEVDFSSDIRTQPAPYVPKIS  329 (381)
T ss_pred             ccCCCC----HHHHhcCcccCCCChhHHhhcCCCCccCcCC
Confidence            555999    99999999999999965 4555567776643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.4e-50  Score=398.46  Aligned_cols=274  Identities=38%  Similarity=0.738  Sum_probs=230.6

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|+.++||||+++++++..++.+|+||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey   76 (328)
T cd05593           1 KLLGKGTFGKVILVREK----ASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEY   76 (328)
T ss_pred             CeeeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeC
Confidence            36899999999999986    47889999999876555555567778899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......    
T Consensus        77 ~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~----  150 (328)
T cd05593          77 VNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA----  150 (328)
T ss_pred             CCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc----
Confidence            9999998887664  5799999999999999999999999999999999999999999999999999754221000    


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        .....+||+.|+||
T Consensus       151 ------------------------------------------------------------------~~~~~~gt~~y~aP  164 (328)
T cd05593         151 ------------------------------------------------------------------TMKTFCGTPEYLAP  164 (328)
T ss_pred             ------------------------------------------------------------------ccccccCCcCccCh
Confidence                                                                              01124699999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC-
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~-  406 (457)
                      |++.+..++.++|||||||++|+|++|+.||...........+......++.  .++.++.++|.+||..||++|++.. 
T Consensus       165 E~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~~~~  242 (328)
T cd05593         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPR--TLSADAKSLLSGLLIKDPNKRLGGGP  242 (328)
T ss_pred             hhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCC--CCCHHHHHHHHHHcCCCHHHcCCCCC
Confidence            9999999999999999999999999999999887777666666666555554  4889999999999999999998211 


Q ss_pred             cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          407 MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                      ..+.+|++||||.+++|..+.  ...||+.|....
T Consensus       243 ~~~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (328)
T cd05593         243 DDAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQVTS  277 (328)
T ss_pred             CCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCC
Confidence            129999999999999998663  345666665543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.4e-51  Score=367.92  Aligned_cols=275  Identities=26%  Similarity=0.389  Sum_probs=228.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|..+++||+|.||+||+|++.    .+|+.||||.++..+.. +.......+|+++|+.++|+||+.++++|...+.+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~----~t~~~VAIKKIkl~~~k-dGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l   76 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDT----ETGKRVAIKKIKLGNAK-DGINRTALREIKLLQELKHPNIIELIDVFPHKSNL   76 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEec----CCCcEEEEEEeeccccc-cCccHHHHHHHHHHHHccCcchhhhhhhccCCCce
Confidence            47888999999999999999977    58999999999877543 33455667799999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      -||+||+ ..+|+..++.. ...++...++.|+.+++.||+|||++.|+||||||.|+||+.+|.+||+|||+++....+
T Consensus        77 ~lVfEfm-~tdLe~vIkd~-~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p  154 (318)
T KOG0659|consen   77 SLVFEFM-PTDLEVVIKDK-NIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSP  154 (318)
T ss_pred             EEEEEec-cccHHHHhccc-ccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCC
Confidence            9999999 78999888764 578999999999999999999999999999999999999999999999999999877543


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .....                                                                      ..+-|
T Consensus       155 ~~~~~----------------------------------------------------------------------~~V~T  164 (318)
T KOG0659|consen  155 NRIQT----------------------------------------------------------------------HQVVT  164 (318)
T ss_pred             Ccccc----------------------------------------------------------------------cceee
Confidence            22111                                                                      11579


Q ss_pred             CCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--------------------
Q 012762          322 HEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--------------------  380 (457)
Q Consensus       322 ~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--------------------  380 (457)
                      .+|+|||.+.|.. |+..+||||.|||+.||+-|.+-|.|.++.+.+..+..... .|..                    
T Consensus       165 RWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LG-TP~~~~WP~~~~lpdY~~~~~~P~  243 (318)
T KOG0659|consen  165 RWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALG-TPTPDQWPEMTSLPDYVKIQQFPK  243 (318)
T ss_pred             eeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcC-CCCcccCccccccccHHHHhcCCC
Confidence            9999999999875 99999999999999999999999999888777776664321 1111                    


Q ss_pred             -------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          381 -------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       381 -------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                             +..++++.|||.+||.+||.+|++    +.|+|+|+||+...-    ...|.-+|+|.+..+
T Consensus       244 ~~~~~lf~aas~d~ldLl~~m~~ynP~~Rit----a~qaL~~~yf~~~P~----pt~~~~lp~p~~~~~  304 (318)
T KOG0659|consen  244 PPLNNLFPAASSDALDLLSKMLTYNPKKRIT----ASQALKHPYFKSLPL----PTPPSKLPIPSTKSN  304 (318)
T ss_pred             CccccccccccHHHHHHHHhhhccCchhccc----HHHHhcchhhhcCCC----CCChhhCcCCcccCC
Confidence                   233457899999999999999999    999999999996322    223445566665333

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=1.9e-50  Score=398.32  Aligned_cols=278  Identities=36%  Similarity=0.700  Sum_probs=233.9

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||.||+|+++    .+|..||+|++.+...........+..|+++++.++||||+++++++...+.+||||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~   76 (323)
T cd05595           1 KLLGKGTFGKVILVREK----ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEY   76 (323)
T ss_pred             CeeeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeC
Confidence            36899999999999976    47889999999876554445556677899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++........    
T Consensus        77 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~----  150 (323)
T cd05595          77 ANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA----  150 (323)
T ss_pred             CCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC----
Confidence            9999998887764  5789999999999999999999999999999999999999999999999998753211000    


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......||+.|+||
T Consensus       151 ------------------------------------------------------------------~~~~~~gt~~y~aP  164 (323)
T cd05595         151 ------------------------------------------------------------------TMKTFCGTPEYLAP  164 (323)
T ss_pred             ------------------------------------------------------------------ccccccCCcCcCCc
Confidence                                                                              01124699999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC-
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~-  406 (457)
                      |++.+..++.++|||||||++|||++|+.||...+.......+......++.  .+++++.++|.+||..||++|++.. 
T Consensus       165 E~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~~~~  242 (323)
T cd05595         165 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGP  242 (323)
T ss_pred             ccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHccCCHHHhCCCCC
Confidence            9999999999999999999999999999999988777777777766666664  4889999999999999999998211 


Q ss_pred             cChHHHhcCCCCCCCCchhhhc--cCCCCCCCCCCcccc
Q 012762          407 MGATAIKRHQFFNGVNWALLRC--AKPPFIPRPVTCRDL  443 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~~~~~~~  443 (457)
                      ..+.++++|+||.+++|..+..  ..||+.|......+.
T Consensus       243 ~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (323)
T cd05595         243 SDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDT  281 (323)
T ss_pred             CCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCChhhh
Confidence            1299999999999999987643  446777766554443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3.9e-50  Score=396.33  Aligned_cols=282  Identities=35%  Similarity=0.694  Sum_probs=237.1

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH---HcCCCCCceEEEEEEcCCc
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE---MLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~---~l~H~nIv~l~~~~~~~~~  160 (457)
                      |++++.||+|+||.||+|.++    .+++.||||++++...........+..|++++.   .++||||+++++++...+.
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~   76 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYK----KTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDH   76 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCE
Confidence            788999999999999999986    478899999998775544455566777777664   5679999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus        77 ~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05589          77 VCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG  153 (324)
T ss_pred             EEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCC
Confidence            9999999999999877754   5699999999999999999999999999999999999999999999999998753211


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                      .....++|
T Consensus       154 ~~----------------------------------------------------------------------~~~~~~~g  163 (324)
T cd05589         154 FG----------------------------------------------------------------------DRTSTFCG  163 (324)
T ss_pred             CC----------------------------------------------------------------------Cccccccc
Confidence            00                                                                      01113569


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      ++.|+|||++.+..++.++|||||||++|||++|+.||.+.........+......++.  .++.++.++|.+||..||.
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L~~dP~  241 (324)
T cd05589         164 TPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPR--FLSREAISIMRRLLRRNPE  241 (324)
T ss_pred             CccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHhhcCHh
Confidence            99999999999999999999999999999999999999988877777777776666554  4889999999999999999


Q ss_pred             CCCCCCc-ChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          401 RRMGSKM-GATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       401 ~Rps~~~-~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      +||++.. .+.++++||||+.++|..+  +...||++|......|..
T Consensus       242 ~R~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~~  288 (324)
T cd05589         242 RRLGSGEKDAEDVKKQPFFRDINWDDLLARKIKPPFVPTIKGPEDVS  288 (324)
T ss_pred             HcCCCCCCCHHHHhhCCCcCCCCHHHHHhCCCCcCccCCCCCcchhh
Confidence            9996543 4999999999999999765  345677777655555443

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-50  Score=394.94  Aligned_cols=269  Identities=39%  Similarity=0.714  Sum_probs=229.7

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||+|+||+||+|+++    .+++.||+|++.+...........+..|+++|++++||||+++++++...+..|+||||++
T Consensus         1 lg~G~~g~Vy~~~~~----~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   76 (312)
T cd05585           1 IGKGSFGKVMQVRKR----DTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFIN   76 (312)
T ss_pred             CCcCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCC
Confidence            799999999999976    4788999999987665555566778889999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      +++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......       
T Consensus        77 ~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~-------  147 (312)
T cd05585          77 GGELFHHLQRE--GRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD-------  147 (312)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCC-------
Confidence            99999888764  679999999999999999999999999999999999999999999999999975422110       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                     ......+||+.|+|||+
T Consensus       148 ---------------------------------------------------------------~~~~~~~gt~~y~aPE~  164 (312)
T cd05585         148 ---------------------------------------------------------------DKTNTFCGTPEYLAPEL  164 (312)
T ss_pred             ---------------------------------------------------------------CccccccCCcccCCHHH
Confidence                                                                           00113469999999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcCh
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA  409 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~  409 (457)
                      +.+..++.++|||||||++|||++|..||.+.........++.....++.  .++.++.++|.+||..||++||+.. .+
T Consensus       165 ~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~dp~~R~~~~-~~  241 (312)
T cd05585         165 LLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPD--GFDRDAKDLLIGLLSRDPTRRLGYN-GA  241 (312)
T ss_pred             HcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCC--cCCHHHHHHHHHHcCCCHHHcCCCC-CH
Confidence            99999999999999999999999999999988877777777776665554  4889999999999999999998632 28


Q ss_pred             HHHhcCCCCCCCCchhh--hccCCCCCCCC
Q 012762          410 TAIKRHQFFNGVNWALL--RCAKPPFIPRP  437 (457)
Q Consensus       410 ~~ll~hp~f~~~~~~~~--~~~~~~~~~~~  437 (457)
                      .++++||||+..+|..+  +...+++.|..
T Consensus       242 ~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~  271 (312)
T cd05585         242 QEIKNHPFFSQLSWKKLLMKGIQPPFKPAV  271 (312)
T ss_pred             HHHHcCCCcCCCCHHHHHhCCCCCCcCCCC
Confidence            99999999999999755  34455665544

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=3.3e-50  Score=396.34  Aligned_cols=278  Identities=36%  Similarity=0.691  Sum_probs=234.2

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|.+++..+ +||||+++++++..++.+|||||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E   76 (321)
T cd05591           1 KVLGKGSFGKVMLAELK----GTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVME   76 (321)
T ss_pred             CccccCCCeEEEEEEEC----CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEe
Confidence            36899999999999976    47889999999876555555566677899998876 89999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......    
T Consensus        77 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~----  150 (321)
T cd05591          77 YVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNG----  150 (321)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCC----
Confidence            99999998887664  678999999999999999999999999999999999999999999999999875321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .......||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (321)
T cd05591         151 ------------------------------------------------------------------VTTTTFCGTPDYIA  164 (321)
T ss_pred             ------------------------------------------------------------------ccccccccCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|+.||........+..+......++..  ++.++.++|.+||..||++|++..
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~--~~~~~~~ll~~~L~~dp~~R~~~~  242 (321)
T cd05591         165 PEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVW--LSKEAVSILKAFMTKNPNKRLGCV  242 (321)
T ss_pred             HHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHHhccCHHHcCCCC
Confidence            999999999999999999999999999999999988888888887776655543  789999999999999999999322


Q ss_pred             c---ChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          407 M---GATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       407 ~---~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                      .   .++++++||||..++|..+.  ...+|+.|......+.
T Consensus       243 ~~~~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (321)
T cd05591         243 ASQGGEDAIKQHPFFKEIDWVLLEQRKIKPPFKPKIKTKRDV  284 (321)
T ss_pred             CCCCCHHHHhcCCccCCCCHHHHHhCCCCCCCCCCCCCcchh
Confidence            1   29999999999999998774  4556777766554444

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.8e-50  Score=398.26  Aligned_cols=284  Identities=35%  Similarity=0.629  Sum_probs=241.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|.+.+.||+|+||+||+|.++    .+++.||+|++++...........+..|+++++.++|+||+++++++.+.+..
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~   76 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREK----ATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNL   76 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeE
Confidence            47999999999999999999877    47889999999887655555667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ||||||+++++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++......
T Consensus        77 ~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~  155 (330)
T cd05601          77 YLVMEYQPGGDLLSLLNRY-EDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTAN  155 (330)
T ss_pred             EEEECCCCCCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCC
Confidence            9999999999999998775 256999999999999999999999999999999999999999999999999998654311


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                     ......||
T Consensus       156 ~~~---------------------------------------------------------------------~~~~~~gt  166 (330)
T cd05601         156 KMV---------------------------------------------------------------------NSKLPVGT  166 (330)
T ss_pred             Cce---------------------------------------------------------------------eeecccCC
Confidence            100                                                                     00123589


Q ss_pred             CCccCchhhc------CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHHHH
Q 012762          322 HEYLAPEIIS------GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       322 ~~y~aPE~l~------~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~  393 (457)
                      +.|+|||++.      +..++.++|||||||++|||++|..||........+.+++...  ..++....++.++.+||++
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  246 (330)
T cd05601         167 PDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQS  246 (330)
T ss_pred             ccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHH
Confidence            9999999997      4457899999999999999999999999877777766665432  3455555688999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccccc
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (457)
                      ||. ||.+||+    ++++++||||..++|..+....|++.|......+..
T Consensus       247 ll~-~p~~R~t----~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (330)
T cd05601         247 LLC-GQKERLG----YEGLCCHPFFSKIDWNNIRNSLPPFVPTLKSDDDTS  292 (330)
T ss_pred             Hcc-ChhhCCC----HHHHhCCCCcCCCCHHHHhhCCCCccCcCCCcchhh
Confidence            998 9999999    999999999999999999888888887665555433

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=7.7e-50  Score=394.20  Aligned_cols=277  Identities=33%  Similarity=0.672  Sum_probs=233.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC-CCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP-FLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~-nIv~l~~~~~~~~~~  161 (457)
                      +|++++.||+|+||.||+|.++    .+++.||+|++.+...........+..|++++..++|+ +|+.+++++...+.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~   76 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERK----GTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   76 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEE
Confidence            5899999999999999999976    37789999999876554455566778899999999764 588999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~  154 (324)
T cd05587          77 YFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG  154 (324)
T ss_pred             EEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCC
Confidence            9999999999998888764  56899999999999999999999999999999999999999999999999987532100


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .                                                                      ......+||
T Consensus       155 ~----------------------------------------------------------------------~~~~~~~gt  164 (324)
T cd05587         155 G----------------------------------------------------------------------KTTRTFCGT  164 (324)
T ss_pred             C----------------------------------------------------------------------CceeeecCC
Confidence            0                                                                      001134699


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+......++.  .++.++.+++.+||..||.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~l~~~P~~  242 (324)
T cd05587         165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPK--SLSKEAVSICKGLLTKHPAK  242 (324)
T ss_pred             ccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhhcCHHH
Confidence            9999999999999999999999999999999999999988877777777766655554  48899999999999999999


Q ss_pred             CCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCC
Q 012762          402 RMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRP  437 (457)
Q Consensus       402 Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~  437 (457)
                      |++.. ...+++++||||+.++|..+.  ...+|+.|..
T Consensus       243 R~~~~~~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~  281 (324)
T cd05587         243 RLGCGPTGERDIREHAFFRRIDWEKLERREIQPPFKPKV  281 (324)
T ss_pred             cCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCccCcC
Confidence            99842 234899999999999998774  3445666554

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=6.2e-50  Score=403.81  Aligned_cols=327  Identities=30%  Similarity=0.533  Sum_probs=241.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.++++||+|+||+||+|+++    .+++.||+|++.+...........+..|+++|+.++|+||+++++++.+++++|
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~----~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~   77 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKV----DTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLY   77 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEEC----CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEE
Confidence            6899999999999999999986    478899999998876655566778888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ||||||++|+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||++.......
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~  155 (382)
T cd05625          78 FVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH  155 (382)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccc
Confidence            999999999999888765  568999999999999999999999999999999999999999999999999976442111


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ........     ......     ...+.........|...  ....           ..+.............+++||+
T Consensus       156 ~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~gt~  212 (382)
T cd05625         156 DSKYYQSG-----DHVRQD-----SMDFSNEWGDPANCRCG--DRLK-----------PLERRAARQHQRCLAHSLVGTP  212 (382)
T ss_pred             cccccccc-----cccccc-----ccccccccccccccccc--cccc-----------chhhhhccccccccccccccCc
Confidence            11000000     000000     00000000000000000  0000           0000000000111123467999


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      .|+|||++.+..++.++|||||||++|||++|+.||.+.........++..  ....|....+++++.++|.+|+ .||+
T Consensus       213 ~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~  291 (382)
T cd05625         213 NYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPE  291 (382)
T ss_pred             ccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHh
Confidence            999999999999999999999999999999999999988776666666643  3344545568899999999986 5999


Q ss_pred             CCCCCCcChHHHhcCCCCCCCCchh-hhccCCCCCCCCCCc
Q 012762          401 RRMGSKMGATAIKRHQFFNGVNWAL-LRCAKPPFIPRPVTC  440 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~~~~~~-~~~~~~~~~~~~~~~  440 (457)
                      +|++. ..++++++||||+.++|.. +....+|++|.....
T Consensus       292 ~R~~~-~~~~ei~~hp~f~~~~~~~~~~~~~~~~~~~~~~~  331 (382)
T cd05625         292 DRLGK-NGADEIKAHPFFKTIDFSSDLRQQSAPYIPKITHP  331 (382)
T ss_pred             HcCCC-CCHHHHhcCCCcCCcChHHHHhcCCCCccCcCCCc
Confidence            99862 3489999999999999974 456677777765443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=6.6e-50  Score=400.42  Aligned_cols=307  Identities=33%  Similarity=0.605  Sum_probs=236.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+..|++++..++|+||+++++++...+.+
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~   76 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKK----DTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNL   76 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            47999999999999999999987    47889999999876655555667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ||||||++||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.++|+|||++......
T Consensus        77 ~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~  154 (360)
T cd05627          77 YLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             EEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccc
Confidence            9999999999999988764  67999999999999999999999999999999999999999999999999998755322


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ............+     +...     ++                 .....++        ..............+.+||
T Consensus       155 ~~~~~~~~~~~~~-----~~~~-----~~-----------------~~~~~~~--------~~~~~~~~~~~~~~~~~gt  199 (360)
T cd05627         155 HRTEFYRNLTHNP-----PSDF-----SF-----------------QNMNSKR--------KAETWKKNRRQLAYSTVGT  199 (360)
T ss_pred             cccccccccccCC-----cccc-----cc-----------------ccccccc--------ccccccccccccccccCCC
Confidence            1111000000000     0000     00                 0000000        0000000111122346799


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+......+..++..  ...++....++.++++||.+|+ .||
T Consensus       200 ~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p  278 (360)
T cd05627         200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEVPISEKAKDLILRFC-TDS  278 (360)
T ss_pred             ccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhc-cCh
Confidence            9999999999999999999999999999999999999988777777666643  3344544457889999999987 499


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCchhhhccCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKP  431 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~  431 (457)
                      .+|++. ..++++++||||++++|..+....+
T Consensus       279 ~~R~~~-~~~~ei~~hp~f~~~~~~~~~~~~~  309 (360)
T cd05627         279 ENRIGS-NGVEEIKSHPFFEGVDWGHIRERPA  309 (360)
T ss_pred             hhcCCC-CCHHHHhcCCCCCCCCHHHHhcCCC
Confidence            999962 2389999999999999998865443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-51  Score=392.86  Aligned_cols=287  Identities=34%  Similarity=0.628  Sum_probs=254.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..++....|+.-++||+|+||.||-|+.++    +|+.||+|.+.|+.+..+..+....+|..||.++..+.||.+--+|
T Consensus       179 ~qpvt~n~F~~~RvlGkGGFGEV~acqvra----TGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAf  254 (591)
T KOG0986|consen  179 LQPVTKNTFRVYRVLGKGGFGEVCACQVRA----TGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAF  254 (591)
T ss_pred             hhhccccceeeeEEEecccccceeEEEEec----chhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeee
Confidence            356777889999999999999999999884    8999999999999998888888899999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      +..+.+|+||..|+||+|.-.|....+.++++..++.++.+|+.||++||..+||.|||||+|||||..|+|+|+|.|+|
T Consensus       255 eTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLA  334 (591)
T KOG0986|consen  255 ETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLA  334 (591)
T ss_pred             cCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceE
Confidence            99999999999999999988888777789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ..+......                                                                       
T Consensus       335 vei~~g~~~-----------------------------------------------------------------------  343 (591)
T KOG0986|consen  335 VEIPEGKPI-----------------------------------------------------------------------  343 (591)
T ss_pred             EecCCCCcc-----------------------------------------------------------------------
Confidence            766543221                                                                       


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH----HHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE----LTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                      ...+||.+|||||++.+..|+...|.|||||+||||+.|+.||......    ++-.+++.....++  ..+++++++|+
T Consensus       344 ~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~--~kFS~eakslc  421 (591)
T KOG0986|consen  344 RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYS--DKFSEEAKSLC  421 (591)
T ss_pred             ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcc--cccCHHHHHHH
Confidence            1237999999999999999999999999999999999999999765433    33444444555555  45899999999


Q ss_pred             HHHhhhCCCCCCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          392 AQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                      +.+|..||++|..-+ ..++++.+||||+++||.++.  ...|||+|.|..
T Consensus       422 ~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~a  472 (591)
T KOG0986|consen  422 EGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPGA  472 (591)
T ss_pred             HHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCccc
Confidence            999999999999976 579999999999999999885  467999998864

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4e-50  Score=396.38  Aligned_cols=278  Identities=36%  Similarity=0.708  Sum_probs=232.5

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|+++++.++||||+++++++...+.+||||||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~   76 (325)
T cd05594           1 KLLGKGTFGKVILVKEK----ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEY   76 (325)
T ss_pred             CeeeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeC
Confidence            36899999999999876    47889999999876554445556777899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      +++++|..++...  ..+++..++.++.||+.||.|||+ .||+||||||+|||++.+|.+||+|||+++.......   
T Consensus        77 ~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~---  151 (325)
T cd05594          77 ANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA---  151 (325)
T ss_pred             CCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc---
Confidence            9999998887664  579999999999999999999997 7999999999999999999999999998753211000   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                         ......||+.|+|
T Consensus       152 -------------------------------------------------------------------~~~~~~gt~~y~a  164 (325)
T cd05594         152 -------------------------------------------------------------------TMKTFCGTPEYLA  164 (325)
T ss_pred             -------------------------------------------------------------------ccccccCCcccCC
Confidence                                                                               0112469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||.+.........+......++.  .++.++.+||.+||..||++|++..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L~~dP~~R~~~~  242 (325)
T cd05594         165 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPR--TLSPEAKSLLSGLLKKDPKQRLGGG  242 (325)
T ss_pred             HHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHhhcCHHHhCCCC
Confidence            99999999999999999999999999999999988777777777666666654  4889999999999999999997211


Q ss_pred             -cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          407 -MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       407 -~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                       ..+.++++||||+++.|....  ...||+.|......+.
T Consensus       243 ~~~~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (325)
T cd05594         243 PDDAKEIMQHKFFAGIVWQDVYEKKLVPPFKPQVTSETDT  282 (325)
T ss_pred             CCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCCcchh
Confidence             019999999999999998663  3457777766554443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=9.6e-50  Score=393.36  Aligned_cols=278  Identities=33%  Similarity=0.671  Sum_probs=236.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~  161 (457)
                      +|.+++.||+|+||+||+|+++    .+++.||+|++.+...........+..|.+++..+ +|++|+.+++++...+.+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~   76 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERK----GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRL   76 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEE
Confidence            5899999999999999999976    47889999999876554444555667788888877 589999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++|+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        77 ~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~  154 (323)
T cd05616          77 YFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWD  154 (323)
T ss_pred             EEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCC
Confidence            9999999999998888764  56999999999999999999999999999999999999999999999999997532110


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .                                                                      ......+||
T Consensus       155 ~----------------------------------------------------------------------~~~~~~~gt  164 (323)
T cd05616         155 G----------------------------------------------------------------------VTTKTFCGT  164 (323)
T ss_pred             C----------------------------------------------------------------------CccccCCCC
Confidence            0                                                                      001134699


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+.........+......+|.  .++.++.+++.+||+.||++
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~l~~~p~~  242 (323)
T cd05616         165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK--SMSKEAVAICKGLMTKHPGK  242 (323)
T ss_pred             hhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--cCCHHHHHHHHHHcccCHHh
Confidence            9999999999999999999999999999999999999998888888888777666664  48899999999999999999


Q ss_pred             CCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCC
Q 012762          402 RMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPV  438 (457)
Q Consensus       402 Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~  438 (457)
                      |++.. ....++++||||+.++|..+.  ...||+.|+..
T Consensus       243 R~~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~~~~~  282 (323)
T cd05616         243 RLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPYKPKAC  282 (323)
T ss_pred             cCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCC
Confidence            99842 236899999999999998774  45667777654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.4e-49  Score=392.29  Aligned_cols=276  Identities=37%  Similarity=0.698  Sum_probs=231.3

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH-HHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-ILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~-il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|.++    .+|+.||+|++.+...........+..|.. +++.++||||+++++++...+..|+|||
T Consensus         1 ~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e   76 (323)
T cd05575           1 KVIGKGSFGKVLLAKHK----ADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLD   76 (323)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEc
Confidence            36899999999999986    478999999998765544444455555655 4577999999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~----  150 (323)
T cd05575          77 YVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHS----  150 (323)
T ss_pred             CCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCC----
Confidence            99999998888764  679999999999999999999999999999999999999999999999999875321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (323)
T cd05575         151 ------------------------------------------------------------------KTTSTFCGTPEYLA  164 (323)
T ss_pred             ------------------------------------------------------------------CccccccCChhhcC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||.+.+..+....++......+  ..++..+.++|.+||+.||.+||+..
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         165 PEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLK--PNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             hhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence            9999999999999999999999999999999998887777777776655544  34789999999999999999999976


Q ss_pred             cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcc
Q 012762          407 MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCR  441 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~  441 (457)
                      ..+.++++||||..++|..+.  ...+|+.|......
T Consensus       243 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (323)
T cd05575         243 DDFLEIKNHVFFSSINWDDLVNKKITPPFNPNVSGPM  279 (323)
T ss_pred             CCHHHHHcCCCcCCCCHHHHhhccCCCCcCCCCCCcc
Confidence            667899999999999998764  45567776655443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1.6e-49  Score=398.91  Aligned_cols=284  Identities=32%  Similarity=0.609  Sum_probs=239.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||+||+|+++    .++..||+|++.+...........+..|+++++.++||||+++++++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~  112 (370)
T cd05596          37 KLRMKAEDFDVIKVIGRGAFGEVQLVRHK----SSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAF  112 (370)
T ss_pred             cCCCCHHHcEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            34567789999999999999999999987    47889999999876555545556677899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+++.+|+||||++||+|..++..   ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~  189 (370)
T cd05596         113 QDDKYLYMVMEYMPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (370)
T ss_pred             ecCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccce
Confidence            999999999999999999998876   45899999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                     ...
T Consensus       190 ~~~~~~~~---------------------------------------------------------------------~~~  200 (370)
T cd05596         190 MKMDANGM---------------------------------------------------------------------VRC  200 (370)
T ss_pred             eeccCCCc---------------------------------------------------------------------ccC
Confidence            54321100                                                                     001


Q ss_pred             ccccCCCCccCchhhcCC----CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHH
Q 012762          316 MSFVGTHEYLAPEIISGE----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKD  389 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~----~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  389 (457)
                      ...+||+.|+|||++.+.    .++.++|||||||++|||++|..||.+......+..++...  +.++....++.++++
T Consensus       201 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  280 (370)
T cd05596         201 DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKD  280 (370)
T ss_pred             CCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHH
Confidence            134699999999999754    37889999999999999999999999888777777776643  445555568999999


Q ss_pred             HHHHHhhhCCCC--CCCCCcChHHHhcCCCCCCCCchh--hhccCCCCCCCCCC
Q 012762          390 LIAQLLVKDPTR--RMGSKMGATAIKRHQFFNGVNWAL--LRCAKPPFIPRPVT  439 (457)
Q Consensus       390 ll~~~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~--~~~~~~~~~~~~~~  439 (457)
                      ||.+||..+|.+  |++    ++++++||||+..+|..  ++...+|++|....
T Consensus       281 li~~~L~~~p~r~~R~s----~~ell~h~~~~~~~~~~~~~~~~~~~~~p~~~~  330 (370)
T cd05596         281 LICAFLTDREVRLGRNG----VDEIKSHPFFKNDQWTFDNIRETVAPVVPELSS  330 (370)
T ss_pred             HHHHHccChhhccCCCC----HHHHhcCcccCCCChhhHHhcCCCcCccCcCCC
Confidence            999999999987  999    99999999999988864  45666788776433

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2e-49  Score=398.05  Aligned_cols=286  Identities=33%  Similarity=0.635  Sum_probs=237.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||.||+|+++    .+++.||+|++.+...........+..|+++++.++||||+++++++.
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~  113 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHK----SSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQ  113 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEE
Confidence            3456679999999999999999999987    478899999998765555555666788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .++.+|+|||||++|+|..++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.
T Consensus       114 ~~~~~~lv~Ey~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~  190 (370)
T cd05621         114 DDKYLYMVMEYMPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCM  190 (370)
T ss_pred             cCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccce
Confidence            99999999999999999998865   458999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                     ....
T Consensus       191 ~~~~~~~---------------------------------------------------------------------~~~~  201 (370)
T cd05621         191 KMDETGM---------------------------------------------------------------------VRCD  201 (370)
T ss_pred             ecccCCc---------------------------------------------------------------------eecc
Confidence            5421100                                                                     0111


Q ss_pred             cccCCCCccCchhhcCCC----CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDL  390 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~----~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l  390 (457)
                      +.+||+.|+|||++.+..    ++.++|||||||++|||++|+.||.+.+....+..++...  +.++....++..++++
T Consensus       202 ~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~l  281 (370)
T cd05621         202 TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNL  281 (370)
T ss_pred             cCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHH
Confidence            346999999999997643    7889999999999999999999999888777777777643  4455555678999999


Q ss_pred             HHHHhhhCCCC--CCCCCcChHHHhcCCCCCCCCch--hhhccCCCCCCCCCCccc
Q 012762          391 IAQLLVKDPTR--RMGSKMGATAIKRHQFFNGVNWA--LLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       391 l~~~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~--~~~~~~~~~~~~~~~~~~  442 (457)
                      +.+||..++.+  |++    +.++++||||+...|.  .++...+|++|......+
T Consensus       282 i~~~L~~~~~r~~R~~----~~e~l~hp~~~~~~~~~~~~~~~~~~~~p~~~~~~~  333 (370)
T cd05621         282 ICAFLTDREVRLGRNG----VEEIKQHPFFKNDQWNWDNIRETAAPVVPELSSDID  333 (370)
T ss_pred             HHHHccCchhccCCCC----HHHHhcCcccCCCCcChHhcCCCCCCcCCCCCCcch
Confidence            99999855443  788    9999999999986654  445667788876654443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-51  Score=429.15  Aligned_cols=288  Identities=38%  Similarity=0.691  Sum_probs=257.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..+||.++++||+|+||.|.+++++.    +++.||+|+++|-.+........|..|..||..-+.+=|+.++-+|++
T Consensus        71 rl~~~DfeilKvIGrGaFGEV~lVr~k~----t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   71 RLKAEDFEILKVIGRGAFGEVALVRHKS----TEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             hCCHHhhHHHHHhcccccceeEEEEeec----cccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            4567899999999999999999999984    889999999999888888888899999999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++++||||||++||+|-.++...  .++++..+++|+..|+.||.-||+.|+|||||||+||||+..|++||+|||.+..
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~--~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClk  224 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKF--DRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLK  224 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHh
Confidence            99999999999999999999886  3799999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      +....                                                                     ..+...
T Consensus       225 m~~dG---------------------------------------------------------------------~V~s~~  235 (1317)
T KOG0612|consen  225 MDADG---------------------------------------------------------------------TVRSSV  235 (1317)
T ss_pred             cCCCC---------------------------------------------------------------------cEEecc
Confidence            54211                                                                     122224


Q ss_pred             ccCCCCccCchhhc----C-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHH
Q 012762          318 FVGTHEYLAPEIIS----G-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       318 ~~gt~~y~aPE~l~----~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  390 (457)
                      -+|||.|++||+++    + ..|+..+|+||+||++|||++|..||+..+-.+.+.+|+.-  .+.||....++.++++|
T Consensus       236 aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdL  315 (1317)
T KOG0612|consen  236 AVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDL  315 (1317)
T ss_pred             ccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHH
Confidence            47999999999996    3 45899999999999999999999999999999999999987  77888767899999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      |.++| .+|+.|.. +..++++.+||||.+++|..|+...||++|.-.+-.|
T Consensus       316 I~~ll-~~~e~RLg-rngiedik~HpFF~g~~W~~iR~~~pP~vPevssd~D  365 (1317)
T KOG0612|consen  316 IEALL-CDREVRLG-RNGIEDIKNHPFFEGIDWDNIRESVPPVVPEVSSDDD  365 (1317)
T ss_pred             HHHHh-cChhhhcc-cccHHHHHhCccccCCChhhhhhcCCCCCCcCCCCCc
Confidence            99987 58889987 5669999999999999999999999999997654444

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-50  Score=393.76  Aligned_cols=255  Identities=28%  Similarity=0.476  Sum_probs=221.0

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCce-EEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCF-FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~-vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ..+.++.+++.+.+.||.|+||+||+|.++      |.. ||+|++......... ...+.+|+.+|.+|+|||||+++|
T Consensus        34 ~~~~i~~~~l~~~~~iG~G~~g~V~~~~~~------g~~~vavK~~~~~~~~~~~-~~~f~~E~~il~~l~HpNIV~f~G  106 (362)
T KOG0192|consen   34 PEEEIDPDELPIEEVLGSGSFGTVYKGKWR------GTDVVAVKIISDPDFDDES-RKAFRREASLLSRLRHPNIVQFYG  106 (362)
T ss_pred             cceecChHHhhhhhhcccCCceeEEEEEeC------CceeEEEEEecchhcChHH-HHHHHHHHHHHHhCCCCCeeeEEE
Confidence            345566677888888999999999999985      445 999999876554444 778999999999999999999999


Q ss_pred             EEEcCC-cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-ceeecCCCCCeEEccCC-CEEEe
Q 012762          154 TLDCPR-WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG-IIYRDLKPENVLVRSDG-HIMLT  230 (457)
Q Consensus       154 ~~~~~~-~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~-iiHrDIKp~NIll~~~~-~vkl~  230 (457)
                      ++.... .++|||||+++|+|..+++....+.++...+..++.||+.||.|||+++ ||||||||+||||+.++ ++||+
T Consensus       107 ~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~  186 (362)
T KOG0192|consen  107 ACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIA  186 (362)
T ss_pred             EEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEEC
Confidence            999887 7999999999999999998854588999999999999999999999999 99999999999999997 99999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.......                                                                   
T Consensus       187 DFGlsr~~~~~~~-------------------------------------------------------------------  199 (362)
T KOG0192|consen  187 DFGLSREKVISKT-------------------------------------------------------------------  199 (362)
T ss_pred             CCccceeeccccc-------------------------------------------------------------------
Confidence            9999875542210                                                                   


Q ss_pred             CccccccccCCCCccCchhhc--CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIIS--GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~--~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                         ..+...||+.|||||++.  ...|+.++||||||++||||+||+.||.+.........++....+.+.+..++..+.
T Consensus       200 ---~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~  276 (362)
T KOG0192|consen  200 ---SMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPHLS  276 (362)
T ss_pred             ---cccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHH
Confidence               011135999999999999  568999999999999999999999999999887777777777777766666999999


Q ss_pred             HHHHHHhhhCCCCCCCCC
Q 012762          389 DLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~  406 (457)
                      .||.+||..||+.||++.
T Consensus       277 ~l~~~CW~~dp~~RP~f~  294 (362)
T KOG0192|consen  277 SLMERCWLVDPSRRPSFL  294 (362)
T ss_pred             HHHHHhCCCCCCcCCCHH
Confidence            999999999999999943

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=2.1e-49  Score=389.70  Aligned_cols=270  Identities=36%  Similarity=0.720  Sum_probs=226.7

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||.||+|+++    .+|+.||+|++++..............|.+++..+ +||||+++++++...+++|+|||
T Consensus         1 ~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   76 (316)
T cd05620           1 KVLGKGSFGKVLLAELK----GKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEEC
Confidence            46999999999999987    47889999999876544444555667788888764 89999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+.+++|..++...  ..+++..+..++.||+.||+|||++||+||||||+|||++.++.++|+|||+++......    
T Consensus        77 ~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----  150 (316)
T cd05620          77 FLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGD----  150 (316)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCC----
Confidence            99999998888764  678999999999999999999999999999999999999999999999999875321000    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (316)
T cd05620         151 ------------------------------------------------------------------NRASTFCGTPDYIA  164 (316)
T ss_pred             ------------------------------------------------------------------CceeccCCCcCccC
Confidence                                                                              01113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||.+.+.......+......++.  .++.+++++|.+||..||++|++  
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~dP~~R~~--  240 (316)
T cd05620         165 PEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPR--WITKESKDILEKLFERDPTRRLG--  240 (316)
T ss_pred             HHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHccCCHHHcCC--
Confidence            99999999999999999999999999999999988777777666655544444  37889999999999999999999  


Q ss_pred             cCh-HHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          407 MGA-TAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       407 ~~~-~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                        + +++++||||+.++|..+.  ...+|+.|+...
T Consensus       241 --~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~~~  274 (316)
T cd05620         241 --VVGNIRGHPFFKTINWTALEKRELDPPFKPKVKS  274 (316)
T ss_pred             --ChHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence              6 689999999999998663  345677766544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-50  Score=385.35  Aligned_cols=262  Identities=28%  Similarity=0.464  Sum_probs=214.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR-  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~-  159 (457)
                      ..++...+.||+|+||+||++..+    ++|..+|||.+.....   ...+.+.+|+.+|.+|+|||||+++|...... 
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~----~~g~~~AvK~v~~~~~---~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~   88 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNK----KTGELMAVKSVELEDS---PTSESLEREIRILSRLNHPNIVQYYGSSSSREN   88 (313)
T ss_pred             cchhhhhccccCccceEEEEEEec----CCCcceeeeeeecccc---hhHHHHHHHHHHHHhCCCCCEEeeCCccccccC
Confidence            346888999999999999999987    3689999999976521   11566788999999999999999999854444 


Q ss_pred             -cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcC
Q 012762          160 -WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLK  237 (457)
Q Consensus       160 -~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~  237 (457)
                       .+++.|||+.+|+|.+++.+..+ .+++..++.+.+||++||.|||++||||+||||+||||+. ++.+||+|||+++.
T Consensus        89 ~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~  167 (313)
T KOG0198|consen   89 DEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKK  167 (313)
T ss_pred             eeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccc
Confidence             68999999999999999998755 8999999999999999999999999999999999999999 69999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                   ......
T Consensus       168 ~~~~~~~-------------------------------------------------------------------~~~~~~  180 (313)
T KOG0198|consen  168 LESKGTK-------------------------------------------------------------------SDSELS  180 (313)
T ss_pred             ccccccc-------------------------------------------------------------------cccccc
Confidence            5420000                                                                   011124


Q ss_pred             ccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCC-CChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKG-IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      +.||+.|||||++... ..+.++|||||||++.||+||..||.. ......+..+.........+..++.++++||.+||
T Consensus       181 ~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~  260 (313)
T KOG0198|consen  181 VQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCF  260 (313)
T ss_pred             ccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHh
Confidence            5799999999999953 334599999999999999999999987 33333344444333222334458999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ..||+.|||    +.++|+|||.+..
T Consensus       261 ~~~p~~Rpt----a~eLL~hpf~~~~  282 (313)
T KOG0198|consen  261 KRDPEKRPT----AEELLEHPFLKQN  282 (313)
T ss_pred             hcCcccCcC----HHHHhhChhhhcc
Confidence            999999999    9999999999763

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.6e-49  Score=388.10  Aligned_cols=269  Identities=37%  Similarity=0.758  Sum_probs=224.7

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++++..............|.+++..+ +||||+++++++..++.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e   76 (316)
T cd05592           1 KVLGKGSFGKVMLAELK----GTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVME   76 (316)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEc
Confidence            36999999999999986    37889999999876544444555566677777754 89999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |++|++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......    
T Consensus        77 ~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~----  150 (316)
T cd05592          77 YLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE----  150 (316)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC----
Confidence            99999999888764  579999999999999999999999999999999999999999999999999975332110    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (316)
T cd05592         151 ------------------------------------------------------------------GKASTFCGTPDYIA  164 (316)
T ss_pred             ------------------------------------------------------------------CccccccCCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|+.||.+.+.......+......++  ..++.++.++|.+||..||++||++ 
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ll~~~l~~~P~~R~~~-  241 (316)
T cd05592         165 PEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFP--RWISKEAKDCLSKLFERDPTKRLGV-  241 (316)
T ss_pred             HHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCC--CCCCHHHHHHHHHHccCCHHHcCCC-
Confidence            9999999999999999999999999999999998887777766655544444  3488899999999999999999983 


Q ss_pred             cChHHHhcCCCCCCCCchhhh--ccCCCCCCCC
Q 012762          407 MGATAIKRHQFFNGVNWALLR--CAKPPFIPRP  437 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~  437 (457)
                        ..++++||||+.++|..+.  ...|++.|..
T Consensus       242 --~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~  272 (316)
T cd05592         242 --DGDIRQHPFFRGIDWERLEKREIPPPFKPKV  272 (316)
T ss_pred             --hHHHHcCcccCCCCHHHHHhCCCCCCcCCCC
Confidence              4589999999999998764  3445665543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=3.7e-49  Score=388.39  Aligned_cols=278  Identities=37%  Similarity=0.712  Sum_probs=232.1

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .++..||+|++++...........+..|+++++.+ +||||+++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e   76 (318)
T cd05570           1 KVLGKGSFGKVLLAELK----GTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVME   76 (318)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEc
Confidence            46999999999999986    37889999999887655555566777899999888 79999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |++|++|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~----  150 (318)
T cd05570          77 YVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGG----  150 (318)
T ss_pred             CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCC----
Confidence            99999998887764  579999999999999999999999999999999999999999999999999875321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||..|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~g~~~y~a  164 (318)
T cd05570         151 ------------------------------------------------------------------VTTSTFCGTPDYIA  164 (318)
T ss_pred             ------------------------------------------------------------------CcccceecCccccC
Confidence                                                                              00113468999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|+|++|+.||.+.........+......++.  .++.++.+||.+||..||.+||+..
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~l~~dP~~R~s~~  242 (318)
T cd05570         165 PEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPR--WLSKEAKSILKSFLTKNPEKRLGCL  242 (318)
T ss_pred             HHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCC--cCCHHHHHHHHHHccCCHHHcCCCC
Confidence            99999999999999999999999999999999988877777777766655554  4889999999999999999999921


Q ss_pred             -cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          407 -MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       407 -~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                       ..+.++++||||+.++|....  ...||+.|......+.
T Consensus       243 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (318)
T cd05570         243 PTGEQDIKGHPFFREIDWDKLERKEIKPPFKPKIKGRFDV  282 (318)
T ss_pred             CCCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCCCCCcchh
Confidence             112999999999999997653  4556666655444433

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=4.5e-49  Score=389.61  Aligned_cols=277  Identities=36%  Similarity=0.691  Sum_probs=226.3

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++++...........+..|+.+++.+ +||||+++++++...+.+|||||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e   76 (329)
T cd05588           1 RVIGRGSYAKVLLVELK----KTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIE   76 (329)
T ss_pred             CeEeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEe
Confidence            46899999999999987    47889999999876555555566778899999988 79999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~----  150 (329)
T cd05588          77 FVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG----  150 (329)
T ss_pred             CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCC----
Confidence            99999998887664  679999999999999999999999999999999999999999999999999875321000    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .....++||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (329)
T cd05588         151 ------------------------------------------------------------------DTTSTFCGTPNYIA  164 (329)
T ss_pred             ------------------------------------------------------------------CccccccCCccccC
Confidence                                                                              01113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC---------hHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---------HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ||++.+..++.++|||||||++|+|++|+.||....         .......+.......|.  .++..+.++|.+||..
T Consensus       165 PE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~  242 (329)
T cd05588         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPR--SLSVKASSVLKGFLNK  242 (329)
T ss_pred             HHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhcc
Confidence            999999999999999999999999999999996321         11233444444445443  4888999999999999


Q ss_pred             CCCCCCCCC--cChHHHhcCCCCCCCCchhhhc--cCCCCCCCCCCccc
Q 012762          398 DPTRRMGSK--MGATAIKRHQFFNGVNWALLRC--AKPPFIPRPVTCRD  442 (457)
Q Consensus       398 dP~~Rps~~--~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~~~~~~  442 (457)
                      ||.+|++..  ..++++++||||..++|..+..  ..|++.|......+
T Consensus       243 dP~~R~~~~~~~~~~~i~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (329)
T cd05588         243 DPKERLGCHPQTGFRDIKSHPFFRNIDWDLLEQKQVLPPYKPNIESDRD  291 (329)
T ss_pred             CHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHhCCCCCCccccCCCcch
Confidence            999999732  2378999999999999987753  34566665544433

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.3e-50  Score=389.08  Aligned_cols=263  Identities=28%  Similarity=0.421  Sum_probs=221.2

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ....+.|..+++||+|+||.||+|++.    .+|+.||+|.+..... .+.......+||.||++|+||||++|.+....
T Consensus       113 ~r~~~~feki~kIGeGTyg~VYkAr~~----~tgkivALKKvr~d~~-~~~~~~t~~REI~ILr~l~HpNIikL~eivt~  187 (560)
T KOG0600|consen  113 PRRADSFEKIEKIGEGTYGQVYKARDL----ETGKIVALKKVRFDNE-KEGFPITAIREIKILRRLDHPNIIKLEEIVTS  187 (560)
T ss_pred             ccchHHHHHHHHhcCcchhheeEeeec----ccCcEEEEEEeecccC-CCcchHHHHHHHHHHHhcCCCcccceeeEEEe
Confidence            455678999999999999999999876    5899999999976643 23345566779999999999999999998876


Q ss_pred             C--CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          158 P--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       158 ~--~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .  +.+|||+||| .-+|..++.. +.-.|++.+++.|+.||+.||+|+|++||+|||||..||||+.+|.+||+|||||
T Consensus       188 ~~~~siYlVFeYM-dhDL~GLl~~-p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLA  265 (560)
T KOG0600|consen  188 KLSGSIYLVFEYM-DHDLSGLLSS-PGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLA  265 (560)
T ss_pred             cCCceEEEEEecc-cchhhhhhcC-CCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccce
Confidence            5  6899999999 5678777655 3467999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +........                                                                     ..
T Consensus       266 r~y~~~~~~---------------------------------------------------------------------~~  276 (560)
T KOG0600|consen  266 RFYTPSGSA---------------------------------------------------------------------PY  276 (560)
T ss_pred             eeccCCCCc---------------------------------------------------------------------cc
Confidence            866532211                                                                     12


Q ss_pred             ccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC----------CCC-----
Q 012762          316 MSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE----------FPK-----  379 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~----------~~~-----  379 (457)
                      +..+-|.+|+|||.+.|.. |+.++|+||.||||.||++|++.|.+.++.+.+..|......          +|.     
T Consensus       277 T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~k  356 (560)
T KOG0600|consen  277 TSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFK  356 (560)
T ss_pred             ccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccC
Confidence            2346899999999999875 999999999999999999999999999888887777653211          111     


Q ss_pred             ------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          380 ------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       380 ------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                  ...++....+|+..||..||.+|.|    +.++|+|+||..
T Consensus       357 p~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~t----A~~aL~seyF~t  405 (560)
T KOG0600|consen  357 PQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGT----ASSALQSEYFTT  405 (560)
T ss_pred             CCCcccchHHHHhccCCHHHHHHHHHHhccCcccccc----HHHHhcCccccc
Confidence                        0233567889999999999999999    999999999955

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=4e-49  Score=389.23  Aligned_cols=275  Identities=37%  Similarity=0.672  Sum_probs=229.8

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH-HHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-ILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~-il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|.++    .+|+.||+|++.+...........+..|.. +++.++||||+++++++..++..|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e   76 (325)
T cd05604           1 KVIGKGSFGKVLLAKRK----LDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLD   76 (325)
T ss_pred             CceeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEc
Confidence            36899999999999876    478899999998765544445555566665 4677899999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+.+++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++......    
T Consensus        77 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~----  150 (325)
T cd05604          77 FVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQS----  150 (325)
T ss_pred             CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCC----
Confidence            99999998877654  679999999999999999999999999999999999999999999999999975321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (325)
T cd05604         151 ------------------------------------------------------------------DTTTTFCGTPEYLA  164 (325)
T ss_pred             ------------------------------------------------------------------CCcccccCChhhCC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||...+..+....++......+  +..+..+.++|.+||..||.+||+..
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         165 PEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLR--PGASLTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             HHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCC--CCCCHHHHHHHHHHhccCHHhcCCCC
Confidence            9999999999999999999999999999999998877777777766554443  34788999999999999999999987


Q ss_pred             cChHHHhcCCCCCCCCchhhhc--cCCCCCCCCCCc
Q 012762          407 MGATAIKRHQFFNGVNWALLRC--AKPPFIPRPVTC  440 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~~~~  440 (457)
                      ..+.++++||||+.++|..+..  ..+|+.|.....
T Consensus       243 ~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~  278 (325)
T cd05604         243 EDFLEIQEHPFFESLSWTDLEQKKIPPPFNPNVEGP  278 (325)
T ss_pred             CCHHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCCc
Confidence            7789999999999999987653  345666655433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6.7e-49  Score=387.38  Aligned_cols=277  Identities=34%  Similarity=0.674  Sum_probs=235.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~  161 (457)
                      +|.+.+.||+|+||+||+|+++    .+++.||+|++.+...........+..|+++++.+. |++|+++++++...+.+
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~   76 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERK----GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRL   76 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEE
Confidence            4788999999999999999986    478899999998765545555666778999998885 57788999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||++|++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        77 ~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~  154 (323)
T cd05615          77 YFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD  154 (323)
T ss_pred             EEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCC
Confidence            9999999999999888764  66999999999999999999999999999999999999999999999999987532110


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......||
T Consensus       155 ~~----------------------------------------------------------------------~~~~~~gt  164 (323)
T cd05615         155 GV----------------------------------------------------------------------TTRTFCGT  164 (323)
T ss_pred             Cc----------------------------------------------------------------------cccCccCC
Confidence            00                                                                      01124599


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+.........+......++.  .++.++.+++.+||..||.+
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~l~~~p~~  242 (323)
T cd05615         165 PDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPK--SLSKEAVSICKGLMTKHPSK  242 (323)
T ss_pred             ccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc--cCCHHHHHHHHHHcccCHhh
Confidence            9999999999989999999999999999999999999998877777887777666554  48899999999999999999


Q ss_pred             CCCCC-cChHHHhcCCCCCCCCchhhhc--cCCCCCCCC
Q 012762          402 RMGSK-MGATAIKRHQFFNGVNWALLRC--AKPPFIPRP  437 (457)
Q Consensus       402 Rps~~-~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~  437 (457)
                      |++.. ...+++++||||+.++|..+..  ..+|+.|+.
T Consensus       243 R~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~  281 (323)
T cd05615         243 RLGCGPEGERDIREHAFFRRIDWDKLENREIQPPFKPKV  281 (323)
T ss_pred             CCCCCCCCHHHHhcCcccCCCCHHHHhcCCCCcCccCcc
Confidence            99853 2468999999999999987744  457777754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=5.6e-49  Score=387.93  Aligned_cols=280  Identities=37%  Similarity=0.697  Sum_probs=230.2

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-hHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||.||+|+... ...+++.||+|++.+...... .....+..|+++|+.++||||+++++++..++..|+|||
T Consensus         2 ~~lg~G~~g~V~~~~~~~-~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVT-GADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             ceeeecCCeEEEEEEEcc-cCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            689999999999998642 224788999999987654322 234556789999999999999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+.+++|..++...  +.+.+..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++......    
T Consensus        81 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----  154 (323)
T cd05584          81 YLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG----  154 (323)
T ss_pred             CCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCC----
Confidence            99999999888764  668899999999999999999999999999999999999999999999999875321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .......||+.|+|
T Consensus       155 ------------------------------------------------------------------~~~~~~~gt~~y~a  168 (323)
T cd05584         155 ------------------------------------------------------------------TVTHTFCGTIEYMA  168 (323)
T ss_pred             ------------------------------------------------------------------CcccccCCCccccC
Confidence                                                                              00112469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|+.||.+.........+......++.  .+++++.++|.+||..||++||+..
T Consensus       169 PE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~~R~~~~  246 (323)
T cd05584         169 PEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPP--YLTPEARDLLKKLLKRNPSSRLGAG  246 (323)
T ss_pred             hhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHcccCHhHcCCCC
Confidence            99999988999999999999999999999999988877777777776655554  4889999999999999999999321


Q ss_pred             -cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCccc
Q 012762          407 -MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRD  442 (457)
Q Consensus       407 -~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~  442 (457)
                       ..++++++||||+..+|..+.  ...+|+.+......+
T Consensus       247 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (323)
T cd05584         247 PGDAAEVQSHPFFRHVNWDDLLARKVEPPFKPLLQSEED  285 (323)
T ss_pred             CCCHHHHhcCCCcCCCCHHHHhcCCCCCCcCCCCCCcch
Confidence             129999999999999997664  334555554444443

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-49  Score=381.06  Aligned_cols=280  Identities=33%  Similarity=0.579  Sum_probs=228.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|++.++||+|+||+||++.+.    .+++.||+|++.............+.+|+++++.++|+||+++++++..++.+|
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   76 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC   76 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEc----CCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEE
Confidence            3889999999999999999876    378899999998765544444456678999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++.......+++..+..++.||+.||.|||+.||+||||||+||+++.++.++|+|||++.......
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05605          77 LVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE  156 (285)
T ss_pred             EEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCC
Confidence            99999999999888776555679999999999999999999999999999999999999999999999999975432100


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                       ....+|+.
T Consensus       157 ~-----------------------------------------------------------------------~~~~~~~~  165 (285)
T cd05605         157 T-----------------------------------------------------------------------IRGRVGTV  165 (285)
T ss_pred             c-----------------------------------------------------------------------cccccCCC
Confidence            0                                                                       01235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      .|+|||++.+..++.++|||||||++|||++|+.||.+.........+....  ........++..+.+||.+||..||.
T Consensus       166 ~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  245 (285)
T cd05605         166 GYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPG  245 (285)
T ss_pred             CccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHH
Confidence            9999999998889999999999999999999999998765433322222111  11122235888999999999999999


Q ss_pred             CCCCCC-cChHHHhcCCCCCCCCchhhhc--cCCCCCCCC
Q 012762          401 RRMGSK-MGATAIKRHQFFNGVNWALLRC--AKPPFIPRP  437 (457)
Q Consensus       401 ~Rps~~-~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~  437 (457)
                      +||++. ..++++++||||...+|..++.  ..||+.|.|
T Consensus       246 ~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05605         246 FRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCPDP  285 (285)
T ss_pred             HhcCCCCCCHHHHhcCcCccCCCHHHHhhCCCCCCCCCCC
Confidence            999321 1299999999999999987754  446777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1e-48  Score=387.35  Aligned_cols=283  Identities=40%  Similarity=0.733  Sum_probs=225.9

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      +|++++.||+|+||+||+|+... +..+++.||+|++.+..... ......+..|+++|+.+ +|+||+++++++..++.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~-~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVT-GHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAK   79 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcc-cCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCE
Confidence            58999999999999999998642 33478899999998754332 23345677899999999 59999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|+||||+.+|+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus        80 ~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          80 LHLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence            99999999999998888764  5699999999999999999999999999999999999999999999999999754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                     .....++|
T Consensus       158 ~~~---------------------------------------------------------------------~~~~~~~g  168 (332)
T cd05614         158 EEK---------------------------------------------------------------------ERTYSFCG  168 (332)
T ss_pred             cCC---------------------------------------------------------------------CccccccC
Confidence            100                                                                     01113469


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      |+.|+|||++.+.. ++.++|||||||++|||++|..||.....    ......+......+  ...++..+.++|.+||
T Consensus       169 t~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l  246 (332)
T cd05614         169 TIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPF--PSFIGPEAQDLLHKLL  246 (332)
T ss_pred             CccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHc
Confidence            99999999998764 78999999999999999999999975322    22333333333333  3458899999999999


Q ss_pred             hhCCCCCCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          396 VKDPTRRMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       396 ~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                      ..||++||+.. ..++++++||||+..+|..+.  ...+++.|....
T Consensus       247 ~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (332)
T cd05614         247 RKDPKKRLGAGPQGASEIKEHPFFKGLDWEALALRKVNPPFRPSIRN  293 (332)
T ss_pred             CCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999421 128999999999999997653  345666654433

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-48  Score=384.25  Aligned_cols=312  Identities=53%  Similarity=0.968  Sum_probs=254.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.+..    +++.||+|.+.+...........+..|+++|++++|+||+++++.+..+...
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~----~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   76 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKG----TGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYL   76 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcC----CCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEE
Confidence            479999999999999999998763    6889999999876554444667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+++|.+++.......+++..++.++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++......
T Consensus        77 ~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  156 (316)
T cd05574          77 CLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVE  156 (316)
T ss_pred             EEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccc
Confidence            99999999999999988766678999999999999999999999999999999999999999999999999998654321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...........  +...              +                         ..--.......+.......++||
T Consensus       157 ~~~~~~~~~~~--~~~~--------------~-------------------------~~~~~~~~~~~~~~~~~~~~~g~  195 (316)
T cd05574         157 PPPVSKALRKG--SRRS--------------S-------------------------VNSIPSETFSEEPSFRSNSFVGT  195 (316)
T ss_pred             ccccccccccc--cccc--------------c-------------------------ccccchhhhcccccCCCCCCcCc
Confidence            11000000000  0000              0                         00000011111222333456799


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      ..|+|||++.+..++.++|||||||++|+|++|..||.+......+..+......++....++..+.++|.+||..||++
T Consensus       196 ~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  275 (316)
T cd05574         196 EEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSK  275 (316)
T ss_pred             cCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhH
Confidence            99999999999889999999999999999999999999888777777777776666666567899999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV  438 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~  438 (457)
                      ||++...++++|+||||++.+|..+....||.+|.|.
T Consensus       276 R~s~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  312 (316)
T cd05574         276 RLGSKRGAAEIKQHPFFRGVNWALIRHTTPPIIPRPD  312 (316)
T ss_pred             CCCchhhHHHHHcCchhhcCChhhcccCCCCCCCCcc
Confidence            9999999999999999999999999999999998774

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=6.9e-49  Score=388.26  Aligned_cols=275  Identities=35%  Similarity=0.677  Sum_probs=224.4

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|+.++.++ +||||+++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E   76 (329)
T cd05618           1 RVIGRGSYAKVLLVRLK----KTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIE   76 (329)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEe
Confidence            46999999999999987    47889999999876554444556677888888776 89999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~----  150 (329)
T cd05618          77 YVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG----  150 (329)
T ss_pred             CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCC----
Confidence            99999998877664  679999999999999999999999999999999999999999999999999975321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .....+.||..|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (329)
T cd05618         151 ------------------------------------------------------------------DTTSTFCGTPNYIA  164 (329)
T ss_pred             ------------------------------------------------------------------CccccccCCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC---------ChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI---------DHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ||++.+..++.++|||||||++|||++|+.||...         ........+......+|.  .++..+.++|.+||..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~ll~~~L~~  242 (329)
T cd05618         165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR--SLSVKAASVLKSFLNK  242 (329)
T ss_pred             HHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999531         111233344445555554  4788999999999999


Q ss_pred             CCCCCCCCC--cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCc
Q 012762          398 DPTRRMGSK--MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTC  440 (457)
Q Consensus       398 dP~~Rps~~--~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~  440 (457)
                      ||++|++..  ..++++++||||+.++|..+.  ...|++.|.....
T Consensus       243 dP~~R~~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  289 (329)
T cd05618         243 DPKERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKPNISGE  289 (329)
T ss_pred             CHHHcCCCCCCCCHHHHhcCCCCCCCCHHHHHcCCCCcCccCCCCCc
Confidence            999999832  235899999999999998664  3556777655443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-48  Score=386.19  Aligned_cols=283  Identities=34%  Similarity=0.636  Sum_probs=234.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+..|+.+++.++|+||+++++++..++++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   76 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMK----NTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNL   76 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEEC----CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeE
Confidence            47999999999999999999987    47889999999876665556667788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.|++|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (331)
T cd05597          77 YLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLAD  155 (331)
T ss_pred             EEEEecCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCC
Confidence            9999999999999988753 356899999999999999999999999999999999999999999999999997543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                     ......+||
T Consensus       156 ~~---------------------------------------------------------------------~~~~~~~gt  166 (331)
T cd05597         156 GT---------------------------------------------------------------------VQSNVAVGT  166 (331)
T ss_pred             CC---------------------------------------------------------------------ccccceecc
Confidence            10                                                                     000123599


Q ss_pred             CCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc--CCCC-CCCCChHHHHHHHH
Q 012762          322 HEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL--EFPK-EPSVPGPAKDLIAQ  393 (457)
Q Consensus       322 ~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~ll~~  393 (457)
                      +.|+|||++.+     ..++.++|||||||++|||++|+.||.+....+.+..++....  .++. ...++.+++++|++
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~  246 (331)
T cd05597         167 PDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRR  246 (331)
T ss_pred             ccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHH
Confidence            99999999974     3478899999999999999999999998776666666655432  2222 23478899999999


Q ss_pred             HhhhCCCC--CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          394 LLVKDPTR--RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       394 ~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      ||..++++  |++    +.++++||||.+++|..+....+|++|...+..+
T Consensus       247 ll~~~~~r~~r~~----~~~~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (331)
T cd05597         247 LICSPETRLGRNG----LQDFKDHPFFEGIDWDNIRNSTAPYVPEVSSPTD  293 (331)
T ss_pred             HccCcccccCCCC----HHHHhcCCCCCCCCHHHHhhCCCCccCcCCCcch
Confidence            99754433  678    9999999999999999998888888876555443

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.8e-49  Score=390.19  Aligned_cols=277  Identities=36%  Similarity=0.670  Sum_probs=230.5

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEEcCCcEEEEEe
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      ||+|+||+||+|+++    .+++.||+|++.+..............|..++.++   +||||+++++++......|+|||
T Consensus         1 lG~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e   76 (330)
T cd05586           1 IGKGTFGQVYQVRKK----DTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTD   76 (330)
T ss_pred             CCCCCceEEEEEEEC----CCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEc
Confidence            799999999999986    47889999999876654444455556677777765   79999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+.+++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.++|+|||++.......    
T Consensus        77 ~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~----  150 (330)
T cd05586          77 YMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDN----  150 (330)
T ss_pred             CCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCC----
Confidence            99999998887764  679999999999999999999999999999999999999999999999999975321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (330)
T cd05586         151 ------------------------------------------------------------------KTTNTFCGTTEYLA  164 (330)
T ss_pred             ------------------------------------------------------------------CCccCccCCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCC
Q 012762          327 PEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       327 PE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~  405 (457)
                      ||++.+. .++.++|||||||++|+|++|..||.+......+..+......++.. .+++++.++|.+||..||.+||+.
T Consensus       165 PE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~li~~~L~~~P~~R~~~  243 (330)
T cd05586         165 PEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKN-VLSDEGRQFVKGLLNRNPQHRLGA  243 (330)
T ss_pred             HHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCc-cCCHHHHHHHHHHcCCCHHHCCCC
Confidence            9999765 48999999999999999999999999887777777777666666543 478899999999999999999976


Q ss_pred             CcChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          406 KMGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       406 ~~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                      ...+.++++||||...+|..+.  ...+|+.|......+.
T Consensus       244 ~~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (330)
T cd05586         244 HRDAVELKEHPFFADIDWDLLSKKQITPPFKPIVDSDEDV  283 (330)
T ss_pred             CCCHHHHhcCccccCCCHHHHHhCCCCCCccCCCCCCcch
Confidence            6669999999999999998764  3456676665444443

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.1e-50  Score=381.43  Aligned_cols=254  Identities=29%  Similarity=0.497  Sum_probs=235.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      ..+|.+.+.||+|.||+|-+|+.+    ..|+.||||.+++.++.+......+++|++||..|+||||+.+|.+|++.+.
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~----~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdK  127 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEH----KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDK  127 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhc----cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCce
Confidence            357999999999999999998865    4899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +.|||||..+|.|++++.+.  +.+++.+++.+++||..|+.|+|.++++|||||.+|||++.++++||+|||++..+..
T Consensus       128 IvivMEYaS~GeLYDYiSer--~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  128 IVIVMEYASGGELYDYISER--GSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEEEEecCCccHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            99999999999999999986  7899999999999999999999999999999999999999999999999999865543


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                       -..+|||
T Consensus       206 ~k-----------------------------------------------------------------------fLqTFCG  214 (668)
T KOG0611|consen  206 KK-----------------------------------------------------------------------FLQTFCG  214 (668)
T ss_pred             cc-----------------------------------------------------------------------HHHHhcC
Confidence            22                                                                       2237899


Q ss_pred             CCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ++.|.+||++.|.+| ++.+|-|||||+||-|..|.+||++.+......+|..+.++-|.   -|.++..||+.||-.||
T Consensus       215 SPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~---~PSdA~gLIRwmLmVNP  291 (668)
T KOG0611|consen  215 SPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPE---TPSDASGLIRWMLMVNP  291 (668)
T ss_pred             CcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCC---CCchHHHHHHHHHhcCc
Confidence            999999999999998 88999999999999999999999999999999999999888776   56789999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f  418 (457)
                      ++|.|    +++|-.|=|.
T Consensus       292 ~RRAT----ieDiAsHWWv  306 (668)
T KOG0611|consen  292 ERRAT----IEDIASHWWV  306 (668)
T ss_pred             ccchh----HHHHhhhhee
Confidence            99999    9999999663

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.2e-48  Score=384.49  Aligned_cols=272  Identities=34%  Similarity=0.729  Sum_probs=226.5

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++++..............|..++..+ +||||+++++++.+.+.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~e   76 (316)
T cd05619           1 KMLGKGSFGKVFLAELK----GTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVME   76 (316)
T ss_pred             CeeeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEe
Confidence            46999999999999987    37889999999876544444455666788888764 89999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++|+|..++...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......    
T Consensus        77 y~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----  150 (316)
T cd05619          77 YLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGD----  150 (316)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCC----
Confidence            99999999888764  568999999999999999999999999999999999999999999999999875321000    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .......||..|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (316)
T cd05619         151 ------------------------------------------------------------------AKTCTFCGTPDYIA  164 (316)
T ss_pred             ------------------------------------------------------------------CceeeecCCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||.+.+.......+......++.  .++.+++++|.+||..||++|++  
T Consensus       165 PE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~l~~~P~~R~~--  240 (316)
T cd05619         165 PEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPR--WLTREAKDILVKLFVREPERRLG--  240 (316)
T ss_pred             HHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCc--cCCHHHHHHHHHHhccCHhhcCC--
Confidence            99999999999999999999999999999999988776666665544444443  47889999999999999999999  


Q ss_pred             cChH-HHhcCCCCCCCCchhhh--ccCCCCCCCCCCcc
Q 012762          407 MGAT-AIKRHQFFNGVNWALLR--CAKPPFIPRPVTCR  441 (457)
Q Consensus       407 ~~~~-~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~  441 (457)
                        +. ++++||||+.++|..+.  ...||+.|......
T Consensus       241 --~~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (316)
T cd05619         241 --VKGDIRQHPFFREIDWSALEEREIEPPFKPKVKSAN  276 (316)
T ss_pred             --ChHHHHcCcccCCCCHHHHHhCCCCCCcCCCCCCcc
Confidence              75 99999999999998764  44567776544433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.6e-48  Score=391.70  Aligned_cols=282  Identities=34%  Similarity=0.638  Sum_probs=235.6

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||.||+|+++    .+++.||+|++.+...........+..|+++++.++||||+++++++
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~----~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~  112 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF  112 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEEC----CCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            34566789999999999999999999987    47889999999876555555556678899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..++.+|+||||++||+|..++..   ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++
T Consensus       113 ~~~~~~~lv~Ey~~gg~L~~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a  189 (371)
T cd05622         113 QDDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTC  189 (371)
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCce
Confidence            999999999999999999998876   45899999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                     ...
T Consensus       190 ~~~~~~~~---------------------------------------------------------------------~~~  200 (371)
T cd05622         190 MKMNKEGM---------------------------------------------------------------------VRC  200 (371)
T ss_pred             eEcCcCCc---------------------------------------------------------------------ccc
Confidence            64421100                                                                     001


Q ss_pred             ccccCCCCccCchhhcCCC----CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKD  389 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~----~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  389 (457)
                      ...+||+.|||||++.+..    ++.++|||||||++|||++|..||.+.+....+..++...  ..++....++..+++
T Consensus       201 ~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  280 (371)
T cd05622         201 DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKN  280 (371)
T ss_pred             cCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHH
Confidence            1346999999999997643    7889999999999999999999999887777777776543  445555678999999


Q ss_pred             HHHHHhhhCCCC---CCCCCcChHHHhcCCCCCCCCc--hhhhccCCCCCCCCC
Q 012762          390 LIAQLLVKDPTR---RMGSKMGATAIKRHQFFNGVNW--ALLRCAKPPFIPRPV  438 (457)
Q Consensus       390 ll~~~L~~dP~~---Rps~~~~~~~ll~hp~f~~~~~--~~~~~~~~~~~~~~~  438 (457)
                      +|.+||. +|..   |++    +++|++|+||++..|  ..++...+|++|...
T Consensus       281 li~~~L~-~~~~r~~r~~----~~ei~~h~~~~~~~~~~~~~~~~~~~~~~~~~  329 (371)
T cd05622         281 LICAFLT-DREVRLGRNG----VEEIKRHLFFKNDQWAWETLRDTVAPVVPDLS  329 (371)
T ss_pred             HHHHHcC-ChhhhcCCCC----HHHHhcCcccCCCChhHHhcCCCCCCCCCCCC
Confidence            9999998 5554   567    999999999998665  445566677777543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.3e-48  Score=376.88  Aligned_cols=270  Identities=32%  Similarity=0.602  Sum_probs=223.0

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||+|+||+||+++++    .+|+.||+|++.+...........+..|+++|++++||||+++++++..+.+.|+||||++
T Consensus         1 lg~G~~g~Vy~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~   76 (277)
T cd05607           1 LGKGGFGEVCAVQVK----NTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMN   76 (277)
T ss_pred             CCCCCceEEEEEEEc----cCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCC
Confidence            799999999999987    3788999999987655444445556679999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      |++|..++.......+++..+..++.||+.||+|||+.||+||||||+|||++.++.++|+|||++........      
T Consensus        77 g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~------  150 (277)
T cd05607          77 GGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT------  150 (277)
T ss_pred             CCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce------
Confidence            99998888765556689999999999999999999999999999999999999999999999998754321100      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                       .....|+..|+|||+
T Consensus       151 -----------------------------------------------------------------~~~~~~~~~y~aPE~  165 (277)
T cd05607         151 -----------------------------------------------------------------ITQRAGTNGYMAPEI  165 (277)
T ss_pred             -----------------------------------------------------------------eeccCCCCCccCHHH
Confidence                                                                             001248999999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH----HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCC
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE----LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~  405 (457)
                      +.+..++.++|||||||++|||++|..||......    .............+ ...++.++++||.+||+.||++||+.
T Consensus       166 ~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~~P~~R~~~  244 (277)
T cd05607         166 LKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFE-HQNFTEESKDICRLFLAKKPEDRLGS  244 (277)
T ss_pred             HccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccc-cccCCHHHHHHHHHHhccCHhhCCCC
Confidence            99888999999999999999999999999764332    22333333332222 23578999999999999999999996


Q ss_pred             CcChHHHhcCCCCCCCCchhhhc--cCCCCCC
Q 012762          406 KMGATAIKRHQFFNGVNWALLRC--AKPPFIP  435 (457)
Q Consensus       406 ~~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~  435 (457)
                      ++.++++++|+||++++|..++.  ..|||.|
T Consensus       245 ~~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~  276 (277)
T cd05607         245 REKNDDPRKHEFFKTINFPRLEAGLIPPPFVP  276 (277)
T ss_pred             ccchhhhhcChhhcCCCHHHHhcCcCCCCCCC
Confidence            66668999999999999998874  4567665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1e-48  Score=378.17  Aligned_cols=270  Identities=30%  Similarity=0.593  Sum_probs=220.4

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||+|+||+||+|.++    .+++.||+|++.+...........+..|+++|+.++|+||+++.+++..+...|+||||++
T Consensus         1 lg~G~~g~Vy~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   76 (280)
T cd05608           1 LGKGGFGEVSACQMR----ATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMN   76 (280)
T ss_pred             CCCCCceeEEEEEEc----cCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCC
Confidence            699999999999887    3788999999987655444445667789999999999999999999999999999999999


Q ss_pred             CCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          170 GGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       170 ~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++|..++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.++.++|+|||++........    
T Consensus        77 ~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~----  152 (280)
T cd05608          77 GGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS----  152 (280)
T ss_pred             CCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc----
Confidence            99998776432  235689999999999999999999999999999999999999999999999999754321100    


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......||+.|+||
T Consensus       153 ------------------------------------------------------------------~~~~~~g~~~y~aP  166 (280)
T cd05608         153 ------------------------------------------------------------------KTKGYAGTPGFMAP  166 (280)
T ss_pred             ------------------------------------------------------------------cccccCCCcCccCH
Confidence                                                                              00123589999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH----HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE----LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRM  403 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rp  403 (457)
                      |++.+..++.++|||||||++|||++|+.||......    .....+.......  ...++.++.+++.+||..||++||
T Consensus       167 E~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~l~~~P~~R~  244 (280)
T cd05608         167 ELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTY--PDKFSPASKSFCEALLAKDPEKRL  244 (280)
T ss_pred             HHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCC--cccCCHHHHHHHHHHhcCCHHHhc
Confidence            9999999999999999999999999999999865432    2222222222222  235889999999999999999999


Q ss_pred             CCCc-ChHHHhcCCCCCCCCchhhhc--cCCCCCC
Q 012762          404 GSKM-GATAIKRHQFFNGVNWALLRC--AKPPFIP  435 (457)
Q Consensus       404 s~~~-~~~~ll~hp~f~~~~~~~~~~--~~~~~~~  435 (457)
                      +.+. .++++++||||++++|..+..  ..+||.|
T Consensus       245 ~~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~  279 (280)
T cd05608         245 GFRDGNCDGLRTHPLFRDLNWRQLEAGMLPPPFVP  279 (280)
T ss_pred             CCCCCCHHHHhcChhhhcCCHhHHhhccCCCCCCC
Confidence            6443 499999999999999987643  4456665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.9e-48  Score=384.38  Aligned_cols=270  Identities=37%  Similarity=0.699  Sum_probs=224.9

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH-HHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-ILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~-il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|.. +++.++|+||+++++++...+..|+|||
T Consensus         1 ~~lg~G~fg~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e   76 (325)
T cd05602           1 KVIGKGSFGKVLLARHK----AEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLD   76 (325)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEe
Confidence            36999999999999976    377899999998765443333444444544 5677899999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  ..+.+..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~----  150 (325)
T cd05602          77 YINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN----  150 (325)
T ss_pred             CCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCC----
Confidence            99999999888764  668899999999999999999999999999999999999999999999999975321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .....++||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (325)
T cd05602         151 ------------------------------------------------------------------GTTSTFCGTPEYLA  164 (325)
T ss_pred             ------------------------------------------------------------------CCcccccCCccccC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|+|++|..||.+......+..+.......+  +.++..+.++|.+||+.||.+|++..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~~~  242 (325)
T cd05602         165 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLK--PNITNSARHLLEGLLQKDRTKRLGAK  242 (325)
T ss_pred             HHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCC--CCCCHHHHHHHHHHcccCHHHCCCCC
Confidence            9999999999999999999999999999999998887777777766554443  35889999999999999999999977


Q ss_pred             cChHHHhcCCCCCCCCchhhhc--cCCCCCC
Q 012762          407 MGATAIKRHQFFNGVNWALLRC--AKPPFIP  435 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~  435 (457)
                      ..+.++++|+||..++|..+..  ..+|+.|
T Consensus       243 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  273 (325)
T cd05602         243 DDFMEIKNHIFFSPINWDDLINKKITPPFNP  273 (325)
T ss_pred             CCHHHHhcCcccCCCCHHHHHhCCCCcCcCC
Confidence            7788999999999999987642  3344444

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2.1e-48  Score=383.46  Aligned_cols=270  Identities=39%  Similarity=0.723  Sum_probs=225.7

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH-HHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-ILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~-il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|+. +++.++||||+++++++...+..|+|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   76 (321)
T cd05603           1 KVIGKGSFGKVLLAKRK----SDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLD   76 (321)
T ss_pred             CeeeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEc
Confidence            36999999999999986    478899999998765544444455555554 5788999999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|...+...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++.......   
T Consensus        77 ~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~---  151 (321)
T cd05603          77 YVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE---  151 (321)
T ss_pred             CCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC---
Confidence            99999998877654  6789999999999999999999999999999999999999999999999998753211000   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                         ....++||+.|+|
T Consensus       152 -------------------------------------------------------------------~~~~~~gt~~y~a  164 (321)
T cd05603         152 -------------------------------------------------------------------TTSTFCGTPEYLA  164 (321)
T ss_pred             -------------------------------------------------------------------ccccccCCcccCC
Confidence                                                                               0113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ||++.+..++.++|||||||++|||++|..||.+.+.......+......++.  ..+.++.++|.+||+.||.+|++..
T Consensus       165 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         165 PEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPG--GKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             HHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCC--CCCHHHHHHHHHHccCCHhhcCCCC
Confidence            99999988999999999999999999999999988777777777766554443  4788999999999999999999976


Q ss_pred             cChHHHhcCCCCCCCCchhhh--ccCCCCCC
Q 012762          407 MGATAIKRHQFFNGVNWALLR--CAKPPFIP  435 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~  435 (457)
                      ..+.++++|+||..++|..+.  ...|++.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T cd05603         243 ADFLEIKNHVFFSPINWDDLYHKRITPPYNP  273 (321)
T ss_pred             CCHHHHhCCCCcCCCCHHHHhcCCCCCCcCC
Confidence            667899999999999998764  23455544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.4e-48  Score=384.78  Aligned_cols=280  Identities=33%  Similarity=0.631  Sum_probs=233.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|+++    .+++.||+|++.+...........+..|+.++..++|+||+.+++++..++..
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~   76 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMK----HTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYL   76 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            47999999999999999999876    47889999999876555555566678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.||+|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~Ey~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  155 (331)
T cd05624          77 YLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQD  155 (331)
T ss_pred             EEEEeCCCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCC
Confidence            9999999999999998763 256899999999999999999999999999999999999999999999999997644311


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                     ......||
T Consensus       156 ~~~---------------------------------------------------------------------~~~~~~gt  166 (331)
T cd05624         156 GTV---------------------------------------------------------------------QSSVAVGT  166 (331)
T ss_pred             Cce---------------------------------------------------------------------eeccccCC
Confidence            100                                                                     00123599


Q ss_pred             CCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC--CC-CCCCChHHHHHHHH
Q 012762          322 HEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--PK-EPSVPGPAKDLIAQ  393 (457)
Q Consensus       322 ~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ll~~  393 (457)
                      +.|+|||++.+     ..++.++|||||||++|||++|+.||......+.+..+.....++  +. ...++.+++++|.+
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~  246 (331)
T cd05624         167 PDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQR  246 (331)
T ss_pred             cccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHH
Confidence            99999999976     457889999999999999999999999877777777766544333  22 13468899999999


Q ss_pred             HhhhCCCC--CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCC
Q 012762          394 LLVKDPTR--RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVT  439 (457)
Q Consensus       394 ~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~  439 (457)
                      ||..++.+  |++    ++++++|+||++++|..++...+|++|....
T Consensus       247 ll~~~~~~~~~~~----~~~~~~h~~f~~~~~~~~~~~~~~~~p~~~~  290 (331)
T cd05624         247 LICSRERRLGQNG----IEDFKKHAFFEGIDWENIRNLEAPYIPDVSS  290 (331)
T ss_pred             HccCchhhcCCCC----HHHHhcCCCcCCCCHHHHhhCCCCccCCCCC
Confidence            99865543  345    9999999999999999998888888876433

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=2e-48  Score=384.61  Aligned_cols=275  Identities=37%  Similarity=0.691  Sum_probs=226.0

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|+++    .+++.||+|++.+...........+..|+.++.++ +|+||+.+++++...+.+|||||
T Consensus         1 ~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   76 (327)
T cd05617           1 RVIGRGSYAKVLLVRLK----KNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIE   76 (327)
T ss_pred             CeeeeCCCeEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEe
Confidence            47999999999999986    47889999999887655555566788899999888 69999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......    
T Consensus        77 ~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~----  150 (327)
T cd05617          77 YVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPG----  150 (327)
T ss_pred             CCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCC----
Confidence            99999998887664  579999999999999999999999999999999999999999999999999875321100    


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        ......+||+.|+|
T Consensus       151 ------------------------------------------------------------------~~~~~~~gt~~y~a  164 (327)
T cd05617         151 ------------------------------------------------------------------DTTSTFCGTPNYIA  164 (327)
T ss_pred             ------------------------------------------------------------------CceecccCCcccCC
Confidence                                                                              00113469999999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-------hHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-------HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||++.+..++.++|||||||++|||++|..||....       .......+.......|.  .++..+.++|.+||..||
T Consensus       165 PE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~li~~~L~~dP  242 (327)
T cd05617         165 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPR--FLSVKASHVLKGFLNKDP  242 (327)
T ss_pred             HHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHhccCH
Confidence            999999999999999999999999999999996421       12233444444444443  488899999999999999


Q ss_pred             CCCCCCC--cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCc
Q 012762          400 TRRMGSK--MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTC  440 (457)
Q Consensus       400 ~~Rps~~--~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~  440 (457)
                      .+|++..  ..++++++||||+.++|..+.  ...|++.|.....
T Consensus       243 ~~R~~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (327)
T cd05617         243 KERLGCQPQTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKPQITDD  287 (327)
T ss_pred             HHcCCCCCCCCHHHHHcCCCCCCCCHHHHHhCCCCCCccCCCCCC
Confidence            9999842  336799999999999999875  3455666665433

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=4.8e-48  Score=382.72  Aligned_cols=279  Identities=34%  Similarity=0.633  Sum_probs=232.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||+|+||+||+++++    .+++.||+|++.+...........+..|+.++..++|+||+++++++...+.+
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   76 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLK----NADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNL   76 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEEC----CCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEE
Confidence            47999999999999999999986    47789999999876555555556678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+|+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus        77 ~lv~ey~~~g~L~~~l~~~-~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~  155 (332)
T cd05623          77 YLVMDYYVGGDLLTLLSKF-EDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED  155 (332)
T ss_pred             EEEEeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccC
Confidence            9999999999999998763 256899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                     ......+||
T Consensus       156 ~~---------------------------------------------------------------------~~~~~~~gt  166 (332)
T cd05623         156 GT---------------------------------------------------------------------VQSSVAVGT  166 (332)
T ss_pred             Cc---------------------------------------------------------------------ceecccccC
Confidence            00                                                                     001123699


Q ss_pred             CCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC--CCC-CCCChHHHHHHHH
Q 012762          322 HEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--PKE-PSVPGPAKDLIAQ  393 (457)
Q Consensus       322 ~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~ll~~  393 (457)
                      +.|+|||++.+     ..++.++|||||||++|||++|+.||...+..+.+..+.......  +.. ..++.++++||.+
T Consensus       167 ~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~  246 (332)
T cd05623         167 PDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRR  246 (332)
T ss_pred             ccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHH
Confidence            99999999863     357889999999999999999999999888777777776654332  222 3578999999999


Q ss_pred             HhhhCCCC--CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCC
Q 012762          394 LLVKDPTR--RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV  438 (457)
Q Consensus       394 ~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~  438 (457)
                      ||..++.+  |++    ++++++||||.+++|..+....+|++|...
T Consensus       247 ll~~~~~r~~r~~----~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~  289 (332)
T cd05623         247 LICSREHRLGQNG----IEDFKQHPFFTGIDWDNIRNCEAPYIPEVS  289 (332)
T ss_pred             HccChhhhcCCCC----HHHHhCCCCcCCCCHHHHhhCCCCccCCCC
Confidence            99765444  577    999999999999999999887778777543

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=2e-49  Score=367.24  Aligned_cols=266  Identities=23%  Similarity=0.312  Sum_probs=221.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...-.+++|+.+.+|++|+||.||+|+++    .+++.||+|.++.... ....----.+|+.+|.+++|||||.+-.+.
T Consensus        70 ~gCrsv~efe~lnrI~EGtyGiVYRakdk----~t~eIVALKr~kmeke-k~GFPItsLREIniLl~~~H~NIV~vkEVV  144 (419)
T KOG0663|consen   70 GGCRSVEEFEKLNRIEEGTYGVVYRAKDK----KTDEIVALKRLKMEKE-KEGFPITSLREINILLKARHPNIVEVKEVV  144 (419)
T ss_pred             cCcccHHHHHHHhhcccCcceeEEEeccC----CcceeEEeeecccccc-cCCCcchhHHHHHHHHhcCCCCeeeeEEEE
Confidence            34456678999999999999999999887    4889999999976542 222333456799999999999999998887


Q ss_pred             Ec--CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          156 DC--PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       156 ~~--~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ..  -+.+||||||| ..+|..++..-+ .+|...+++.++.|++.||+|||.++|+|||||++|+|++..|.+||+|||
T Consensus       145 vG~~~d~iy~VMe~~-EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFG  222 (419)
T KOG0663|consen  145 VGSNMDKIYIVMEYV-EHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFG  222 (419)
T ss_pred             eccccceeeeeHHHH-HhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccc
Confidence            54  35699999999 678988888754 689999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +|+....+..                                                                      
T Consensus       223 LAR~ygsp~k----------------------------------------------------------------------  232 (419)
T KOG0663|consen  223 LAREYGSPLK----------------------------------------------------------------------  232 (419)
T ss_pred             hhhhhcCCcc----------------------------------------------------------------------
Confidence            9987753311                                                                      


Q ss_pred             ccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC----------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE----------------  376 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~----------------  376 (457)
                      ..+.++-|.+|+|||.+.|.. |+.++||||+|||+.||+++++.|.|..+.+.+.+|......                
T Consensus       233 ~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k  312 (419)
T KOG0663|consen  233 PYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVK  312 (419)
T ss_pred             cCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhh
Confidence            122457899999999999876 999999999999999999999999999888777777653211                


Q ss_pred             ---CCCC-----------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          377 ---FPKE-----------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       377 ---~~~~-----------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                         ++..           ..+++...+|++.+|.+||.+|.|    +.|.|+|.||....
T Consensus       313 ~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~t----A~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  313 KMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRIT----AEDGLKHEYFRETP  368 (419)
T ss_pred             ccccCCCCchhhhhhccccccchhHHHHHHHHhccCcccccc----HHHhhcccccccCC
Confidence               1100           013467889999999999999999    99999999999843

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-50  Score=379.23  Aligned_cols=293  Identities=32%  Similarity=0.649  Sum_probs=260.6

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      ....+...||.++.+||+|+||+|.+|+-+    .+.+.||||++++.-+..++..+--..|.++|... +-|.++.++.
T Consensus       342 ~~d~i~~tDFnFl~VlGKGSFGKVlLaerk----gtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHS  417 (683)
T KOG0696|consen  342 KRDRIKATDFNFLMVLGKGSFGKVLLAERK----GTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHS  417 (683)
T ss_pred             cccceeecccceEEEeccCccceeeeeccc----CcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHH
Confidence            344677889999999999999999999876    47789999999998887777777778899999877 4688999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +|+.-+++|+||||+.||+|-..++.-  +.+.|..+..++.+|+-||-|||++|||.||||.+||||+.+|++||+|||
T Consensus       418 cFQTmDRLyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFG  495 (683)
T KOG0696|consen  418 CFQTMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFG  495 (683)
T ss_pred             HhhhhhheeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecc
Confidence            999999999999999999997766664  889999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++..--.                                                                      +.
T Consensus       496 mcKEni~~----------------------------------------------------------------------~~  505 (683)
T KOG0696|consen  496 MCKENIFD----------------------------------------------------------------------GV  505 (683)
T ss_pred             cccccccC----------------------------------------------------------------------Cc
Confidence            98643211                                                                      22


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .+.+++||+.|+|||++...+|+..+|.||+||+||||+.|++||++.++.+.+..|.+....+|..  ++.++.+++..
T Consensus       506 TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKs--lSkEAv~ickg  583 (683)
T KOG0696|consen  506 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKS--LSKEAVAICKG  583 (683)
T ss_pred             ceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCccc--ccHHHHHHHHH
Confidence            2347899999999999999999999999999999999999999999999999999999999998876  99999999999


Q ss_pred             HhhhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcccccc
Q 012762          394 LLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTT  445 (457)
Q Consensus       394 ~L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~  445 (457)
                      .|...|.+|.... ..-.+|..||||+.+||..+  +.+.|||.|++...++.+.
T Consensus       584 ~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~k~~r~~eN  638 (683)
T KOG0696|consen  584 LLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERREIQPPFKPKIKCGRDAEN  638 (683)
T ss_pred             HhhcCCccccCCCCccccchhhCcchhhccHHHHhhccCCCCCCCccccCCchhh
Confidence            9999999998753 34678999999999999988  5789999999977766543

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-48  Score=386.75  Aligned_cols=259  Identities=32%  Similarity=0.553  Sum_probs=234.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~  159 (457)
                      ...|.+.+.||.|.||+||+|+.+.    +|+.||+|++.+...........+.+|++||+++. |||||.++++|++..
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~----tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~  109 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKS----TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD  109 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecC----CCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC
Confidence            3579999999999999999999874    79999999999988766666678899999999998 999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC----CCEEEeccCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD----GHIMLTDFDLS  235 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~----~~vkl~DFG~s  235 (457)
                      .+++|||+|.||.|.+.+...   .+++..+..++.|++.++.|||+.||+||||||+|+|+...    +.+|++|||++
T Consensus       110 ~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla  186 (382)
T KOG0032|consen  110 SVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLA  186 (382)
T ss_pred             eEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCc
Confidence            999999999999999888775   39999999999999999999999999999999999999743    47999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      .....                                                                       ..+.
T Consensus       187 ~~~~~-----------------------------------------------------------------------~~~~  195 (382)
T KOG0032|consen  187 KFIKP-----------------------------------------------------------------------GERL  195 (382)
T ss_pred             eEccC-----------------------------------------------------------------------CceE
Confidence            76653                                                                       1123


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQ  393 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~  393 (457)
                      ...+||+.|+|||++.+.+|+..+||||+|+++|.|++|.+||.+........++..+.+.+.  .+..++..++++|.+
T Consensus       196 ~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~  275 (382)
T KOG0032|consen  196 HTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRK  275 (382)
T ss_pred             eeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999998888889998887665  456789999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ||..||..|++    +.++|+|||+++.
T Consensus       276 ll~~dp~~R~t----a~~~L~HpWi~~~  299 (382)
T KOG0032|consen  276 LLEFDPRKRLT----AAQALQHPWIKSI  299 (382)
T ss_pred             hcccCcccCCC----HHHHhcCccccCC
Confidence            99999999999    9999999998864

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.1e-47  Score=383.25  Aligned_cols=259  Identities=27%  Similarity=0.385  Sum_probs=207.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .....++|.++++||+|+||+||+|+++    .+++.||||++....  .......+.+|+++|+.++|+||+++++++.
T Consensus        69 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  142 (353)
T PLN00034         69 AAKSLSELERVNRIGSGAGGTVYKVIHR----PTGRLYALKVIYGNH--EDTVRRQICREIEILRDVNHPNVVKCHDMFD  142 (353)
T ss_pred             CCCCHHHHhhhhhccCCCCeEEEEEEEC----CCCCEEEEEEEecCC--cHHHHHHHHHHHHHHHhCCCCCcceeeeEec
Confidence            4455678999999999999999999876    478899999986542  2234566788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .++.+|+||||+++++|...      ....+..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus       143 ~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        143 HNGEIQVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             cCCeEEEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            99999999999999998542      345678888999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                      ...
T Consensus       217 ~~~~~~~----------------------------------------------------------------------~~~  226 (353)
T PLN00034        217 ILAQTMD----------------------------------------------------------------------PCN  226 (353)
T ss_pred             ecccccc----------------------------------------------------------------------ccc
Confidence            4421100                                                                      001


Q ss_pred             cccCCCCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHH--HHHHHhcccCCCCCCCCChHHHH
Q 012762          317 SFVGTHEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT--LANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                      ..+||..|+|||++..     ...+.++|||||||++|||++|+.||........  ....+...........++.++++
T Consensus       227 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (353)
T PLN00034        227 SSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRH  306 (353)
T ss_pred             ccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHH
Confidence            2359999999999853     2345689999999999999999999974332221  11111112222233457889999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ||.+||..||++||+    +.||++||||..-
T Consensus       307 li~~~l~~~P~~Rpt----~~ell~hp~~~~~  334 (353)
T PLN00034        307 FISCCLQREPAKRWS----AMQLLQHPFILRA  334 (353)
T ss_pred             HHHHHccCChhhCcC----HHHHhcCcccccC
Confidence            999999999999999    9999999999974

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.5e-48  Score=381.38  Aligned_cols=272  Identities=38%  Similarity=0.753  Sum_probs=228.5

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||.||++++.. +..+|+.||+|++.+..... .....+..|+++|++++||||+++++++..++..|+||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~-~~~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   79 (318)
T cd05582           2 KVLGQGSFGKVFLVRKIT-GPDAGQLYAMKVLKKATLKV-RDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF   79 (318)
T ss_pred             ceeeeCCCEEEEEEEEec-cCCCCCEEEEEEEEHHHhhh-hhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence            579999999999998642 22478899999998764322 2344567799999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......     
T Consensus        80 ~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-----  152 (318)
T cd05582          80 LRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE-----  152 (318)
T ss_pred             CCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCC-----
Confidence            9999999888664  569999999999999999999999999999999999999999999999999975432110     


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                       .....+.||+.|+||
T Consensus       153 -----------------------------------------------------------------~~~~~~~g~~~y~aP  167 (318)
T cd05582         153 -----------------------------------------------------------------KKAYSFCGTVEYMAP  167 (318)
T ss_pred             -----------------------------------------------------------------CceecccCChhhcCH
Confidence                                                                             011134699999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      |++.+..++.++|||||||++|||++|+.||...........+......++.  .++.++.+||++||+.||++||+...
T Consensus       168 E~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         168 EVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQ--FLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             HHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            9999988999999999999999999999999988877777777766665554  48899999999999999999999643


Q ss_pred             -ChHHHhcCCCCCCCCchhhhc--cCCCCCC
Q 012762          408 -GATAIKRHQFFNGVNWALLRC--AKPPFIP  435 (457)
Q Consensus       408 -~~~~ll~hp~f~~~~~~~~~~--~~~~~~~  435 (457)
                       .+.++++||||+.++|..+..  ..|++.|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (318)
T cd05582         246 DGVEEIKRHPFFSTIDWNKLYRREIKPPFKP  276 (318)
T ss_pred             CCHHHHhCCCCcCCCCHHHHHhcCCCCCcCC
Confidence             478899999999999987643  4455554

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-49  Score=386.79  Aligned_cols=253  Identities=23%  Similarity=0.374  Sum_probs=220.7

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ...|.+..+.++++++||+|.||.||+|.+.     ....||+|.++....    ....+.+|++||++|+|+|||++++
T Consensus       198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~-----~~~~vavk~ik~~~m----~~~~f~~Ea~iMk~L~H~~lV~l~g  268 (468)
T KOG0197|consen  198 RDPWEIPREELKLIRELGSGQFGEVWLGKWN-----GSTKVAVKTIKEGSM----SPEAFLREAQIMKKLRHEKLVKLYG  268 (468)
T ss_pred             cCCeeecHHHHHHHHHhcCCccceEEEEEEc-----CCCcccceEEecccc----ChhHHHHHHHHHHhCcccCeEEEEE
Confidence            3456677778899999999999999999996     445799999976533    4456678999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++..++.+||||||+..|+|.++++......+.....+.++.|||+|++||+++++|||||...||||+.++.|||+|||
T Consensus       269 V~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFG  348 (468)
T KOG0197|consen  269 VCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFG  348 (468)
T ss_pred             EEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccc
Confidence            99998899999999999999999998667889999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++...+.......                                                                  
T Consensus       349 LAr~~~d~~Y~~~~------------------------------------------------------------------  362 (468)
T KOG0197|consen  349 LARLIGDDEYTASE------------------------------------------------------------------  362 (468)
T ss_pred             cccccCCCceeecC------------------------------------------------------------------
Confidence            99854432221100                                                                  


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                         .---...|.|||.+....++.+||||||||+||||+| |+.||.+.++.+.+.. +...+++|.+..+|+.+.++|.
T Consensus       363 ---~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~-le~GyRlp~P~~CP~~vY~lM~  438 (468)
T KOG0197|consen  363 ---GGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLEL-LERGYRLPRPEGCPDEVYELMK  438 (468)
T ss_pred             ---CCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHH-HhccCcCCCCCCCCHHHHHHHH
Confidence               0012557999999999999999999999999999997 9999999998877765 5677899999999999999999


Q ss_pred             HHhhhCCCCCCCC
Q 012762          393 QLLVKDPTRRMGS  405 (457)
Q Consensus       393 ~~L~~dP~~Rps~  405 (457)
                      .||..+|++|||+
T Consensus       439 ~CW~~~P~~RPtF  451 (468)
T KOG0197|consen  439 SCWHEDPEDRPTF  451 (468)
T ss_pred             HHhhCCcccCCCH
Confidence            9999999999994

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=9.6e-48  Score=372.38  Aligned_cols=279  Identities=33%  Similarity=0.587  Sum_probs=229.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|++.+.||+|+||+||+|.++.    +++.||+|.+.+...........+..|+.++++++|+||+.+++.+...+..|
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~----~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~   76 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALC   76 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcC----CCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEE
Confidence            37888999999999999999873    78899999997765444444456678999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+.|++|..++.......+++..+..++.|++.||.|||+.||+||||||+||+++.++.++|+|||++.......
T Consensus        77 lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05630          77 LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ  156 (285)
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc
Confidence            99999999999988876555679999999999999999999999999999999999999999999999999875332100


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                                                                                             ......|+.
T Consensus       157 -----------------------------------------------------------------------~~~~~~g~~  165 (285)
T cd05630         157 -----------------------------------------------------------------------TIKGRVGTV  165 (285)
T ss_pred             -----------------------------------------------------------------------cccCCCCCc
Confidence                                                                                   001235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH---HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      .|+|||++.+..++.++|||||||++|+|++|+.||......   ......... ........++.++.+|+.+||+.||
T Consensus       166 ~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p  244 (285)
T cd05630         166 GYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE-VQEEYSEKFSPDARSLCKMLLCKDP  244 (285)
T ss_pred             cccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh-hhhhcCccCCHHHHHHHHHHhhcCH
Confidence            999999999988999999999999999999999999875432   122222111 1112234578899999999999999


Q ss_pred             CCCCCCC-cChHHHhcCCCCCCCCchhhhc--cCCCCCCCC
Q 012762          400 TRRMGSK-MGATAIKRHQFFNGVNWALLRC--AKPPFIPRP  437 (457)
Q Consensus       400 ~~Rps~~-~~~~~ll~hp~f~~~~~~~~~~--~~~~~~~~~  437 (457)
                      ++||+.. ..++++++||||+.++|..+..  ..|||.|.|
T Consensus       245 ~~R~s~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05630         245 KERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPPFKPDP  285 (285)
T ss_pred             HHccCCCCCchHHHHcChhhhccCHHHHhcCCCCCCCCCCC
Confidence            9999843 1378999999999999997755  778999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=7.6e-48  Score=376.25  Aligned_cols=262  Identities=25%  Similarity=0.375  Sum_probs=208.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.++||+|+||+||+|+++    .+++.||+|++.....  ......+.+|+++++.++||||+++++++.....
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   77 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSK----VNGKLVALKVIRLQEE--EGTPFTAIREASLLKGLKHANIVLLHDIIHTKET   77 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEEC----CCCCEEEEEEeccccc--cccchhHHHHHHHHhhCCCCCcCeEEEEEecCCe
Confidence            368999999999999999999986    3788999999975432  2233456779999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+ .++|..++... ...+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.....
T Consensus        78 ~~lv~e~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  155 (303)
T cd07869          78 LTLVFEYV-HTDLCQYMDKH-PGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSV  155 (303)
T ss_pred             EEEEEECC-CcCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccC
Confidence            99999999 56777766554 35689999999999999999999999999999999999999999999999998753321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       156 ~~~----------------------------------------------------------------------~~~~~~~  165 (303)
T cd07869         156 PSH----------------------------------------------------------------------TYSNEVV  165 (303)
T ss_pred             CCc----------------------------------------------------------------------cCCCCcc
Confidence            100                                                                      0012358


Q ss_pred             CCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccC-----------C----------
Q 012762          321 THEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALE-----------F----------  377 (457)
Q Consensus       321 t~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~-----------~----------  377 (457)
                      |+.|+|||++.+. .++.++|||||||++|+|++|..||.+..+. ..+..+......           .          
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (303)
T cd07869         166 TLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTL  245 (303)
T ss_pred             cCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccc
Confidence            9999999998764 4789999999999999999999999875443 222222111000           0          


Q ss_pred             --CC-------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          378 --PK-------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       378 --~~-------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                        +.       ....+.++.+||.+||+.||++|||    +.|+++||||+.+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s----~~~~l~h~~f~~~~~~  297 (303)
T cd07869         246 YSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLS----AQAALSHEYFSDLPPR  297 (303)
T ss_pred             cCCccHHHHhhccCCChHHHHHHHHHhccCchhccC----HHHHhcCcccccCChh
Confidence              00       0123467899999999999999999    9999999999988753

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.3e-47  Score=369.64  Aligned_cols=279  Identities=35%  Similarity=0.595  Sum_probs=232.3

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |+..+.||+|+||+||+|.+.    .+++.||+|++.+...........+.+|+++|++++|+||+.+++++..++..|+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~l   77 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVR----ATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCL   77 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEC----CCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEE
Confidence            788899999999999999887    3788999999987655444445567789999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+.+++|..++.......+++..+..++.|++.||.|||+.||+||||||+||+++.++.++|+|||++........
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~  157 (285)
T cd05632          78 VLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES  157 (285)
T ss_pred             EEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc
Confidence            99999999998888765556799999999999999999999999999999999999999999999999998753321000


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                             .....|+..
T Consensus       158 -----------------------------------------------------------------------~~~~~g~~~  166 (285)
T cd05632         158 -----------------------------------------------------------------------IRGRVGTVG  166 (285)
T ss_pred             -----------------------------------------------------------------------ccCCCCCcC
Confidence                                                                                   012358999


Q ss_pred             ccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc--CCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL--EFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       324 y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |+|||++.+..++.++|+|||||++|+|++|..||.+.........+.....  .......++.++.+|+.+||+.||++
T Consensus       167 ~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  246 (285)
T cd05632         167 YMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQ  246 (285)
T ss_pred             ccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhH
Confidence            9999999988899999999999999999999999987665433333322211  11223457889999999999999999


Q ss_pred             CCCCCc-ChHHHhcCCCCCCCCchhh--hccCCCCCCCC
Q 012762          402 RMGSKM-GATAIKRHQFFNGVNWALL--RCAKPPFIPRP  437 (457)
Q Consensus       402 Rps~~~-~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~  437 (457)
                      ||+... .+.++++|+||+.++|..+  ....|+|+|.|
T Consensus       247 R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (285)
T cd05632         247 RLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPFVPDP  285 (285)
T ss_pred             cCCCcccChHHHHcChhhhcCCHHHHhcCcCCCCCCCCC
Confidence            999653 4889999999999999876  45678999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=2.6e-48  Score=389.89  Aligned_cols=252  Identities=29%  Similarity=0.435  Sum_probs=218.2

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-C-----CCCceEEEEEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-H-----PFLPTLYATLD  156 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H-----~nIv~l~~~~~  156 (457)
                      +|.|++.||+|+||+|-+|+++    .+++.||||+++...    ....+...|+.||..|+ |     -|||+++++|.
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~----~T~e~VAIKIiKN~k----~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~  258 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDH----KTGEIVAIKIIKNKK----RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFY  258 (586)
T ss_pred             EEEEEEEecccccceeEEEEec----CCCcEEEEEeeccCh----HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccc
Confidence            6789999999999999999987    589999999998764    35566777999999996 4     47999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC--CCEEEeccCC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD--GHIMLTDFDL  234 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~--~~vkl~DFG~  234 (457)
                      ..+++|||+|++ ..+|+++++.+...+++...++.++.||+.||.+||+.||||.|||||||||...  ..|||+|||.
T Consensus       259 fr~HlciVfELL-~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  259 FRNHLCIVFELL-STNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             cccceeeeehhh-hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccc
Confidence            999999999999 8999999999999999999999999999999999999999999999999999754  3799999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +....                                                                         ..
T Consensus       338 Sc~~~-------------------------------------------------------------------------q~  344 (586)
T KOG0667|consen  338 SCFES-------------------------------------------------------------------------QR  344 (586)
T ss_pred             ccccC-------------------------------------------------------------------------Cc
Confidence            75443                                                                         22


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--------------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--------------  380 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--------------  380 (457)
                      ..+++.+..|+|||++.|.+|+.+.||||||||++||++|.+.|.|.++.+.+..|+......|..              
T Consensus       345 vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~  424 (586)
T KOG0667|consen  345 VYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTS  424 (586)
T ss_pred             ceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhc
Confidence            236789999999999999999999999999999999999999999998888877777532211110              


Q ss_pred             ----------CC----------------------CC---------------hHHHHHHHHHhhhCCCCCCCCCcChHHHh
Q 012762          381 ----------PS----------------------VP---------------GPAKDLIAQLLVKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       381 ----------~~----------------------~~---------------~~~~~ll~~~L~~dP~~Rps~~~~~~~ll  413 (457)
                                ..                      .|               ..+.++|.+||.+||.+|+|    ..++|
T Consensus       425 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~t----p~qal  500 (586)
T KOG0667|consen  425 LKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERIT----PAQAL  500 (586)
T ss_pred             cCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCC----HHHHh
Confidence                      00                      01               24789999999999999999    99999


Q ss_pred             cCCCCCC
Q 012762          414 RHQFFNG  420 (457)
Q Consensus       414 ~hp~f~~  420 (457)
                      +||||..
T Consensus       501 ~Hpfl~~  507 (586)
T KOG0667|consen  501 NHPFLTG  507 (586)
T ss_pred             cCccccc
Confidence            9999996

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-49  Score=379.76  Aligned_cols=263  Identities=29%  Similarity=0.458  Sum_probs=236.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +=|.+.+.||+|.|++|-+|++-    -+|..||||++.|.++..- ....+..|+++|+.++|||||++|.+......+
T Consensus        18 GLYDLekTlG~GHFAVVKLArHV----FTGekVAVKviDKTKlD~~-st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKl   92 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHV----FTGEKVAVKVIDKTKLDTL-STGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKL   92 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhh----cccceeEEEEecccccchh-hhhHHHHHHHHHHHhcCcCeeeeeehhcccceE
Confidence            45888999999999999999876    4899999999999876443 445566699999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~~~~  240 (457)
                      |||+|+-++|+|++++-.+. .++.|..++.|+.||+.|+.|+|+..+|||||||+|+++-+ -|-|||.||||+..+.+
T Consensus        93 yLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P  171 (864)
T KOG4717|consen   93 YLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP  171 (864)
T ss_pred             EEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCC
Confidence            99999999999999987763 67999999999999999999999999999999999988764 58999999999865542


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                                                                                             +.+..++||
T Consensus       172 -----------------------------------------------------------------------G~kL~TsCG  180 (864)
T KOG4717|consen  172 -----------------------------------------------------------------------GKKLTTSCG  180 (864)
T ss_pred             -----------------------------------------------------------------------cchhhcccc
Confidence                                                                                   334457799


Q ss_pred             CCCccCchhhcCCCCC-ccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHG-NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~-~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|.|||++.|..|+ +++||||||||||.|.+|++||+..++.+.+-.|++..+..|.-  ++.++++||++||+.||
T Consensus       181 SLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPsh--vS~eCrdLI~sMLvRdP  258 (864)
T KOG4717|consen  181 SLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSH--VSKECRDLIQSMLVRDP  258 (864)
T ss_pred             hhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchh--hhHHHHHHHHHHHhcCc
Confidence            9999999999999985 68999999999999999999999999999999999999988875  99999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      .+|.+    +++|..|+|++.+|....-
T Consensus       259 kkRAs----lEeI~s~~Wlq~~D~~~sT  282 (864)
T KOG4717|consen  259 KKRAS----LEEIVSTSWLQAGDRGLST  282 (864)
T ss_pred             hhhcc----HHHHhccccccCCCCCccc
Confidence            99999    9999999999998886543

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.4e-47  Score=371.73  Aligned_cols=257  Identities=25%  Similarity=0.372  Sum_probs=209.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|++.++||.|+||+||+|+++    .++..||+|+++....  ......+.+|++++++++||||+++++++...+
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   76 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSK----LTENLVALKEIRLEHE--EGAPCTAIREVSLLKNLKHANIVTLHDIIHTER   76 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEEC----CCCCEEEEEEeccccc--CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            4578999999999999999999876    4788999999865421  223345677999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+. ++|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...
T Consensus        77 ~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~  154 (288)
T cd07871          77 CLTLVFEYLD-SDLKQYLDNC-GNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKS  154 (288)
T ss_pred             eEEEEEeCCC-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeecc
Confidence            9999999995 5898877654 2457899999999999999999999999999999999999999999999999975432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       155 ~~~~----------------------------------------------------------------------~~~~~~  164 (288)
T cd07871         155 VPTK----------------------------------------------------------------------TYSNEV  164 (288)
T ss_pred             CCCc----------------------------------------------------------------------cccCce
Confidence            1100                                                                      001225


Q ss_pred             CCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCCC
Q 012762          320 GTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFPK  379 (457)
Q Consensus       320 gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~~  379 (457)
                      |++.|+|||++.+ ..++.++|||||||++|+|++|+.||.+....+.+..+.....                   .++.
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd07871         165 VTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQ  244 (288)
T ss_pred             ecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCc
Confidence            8999999999876 4589999999999999999999999988776555544432111                   0111


Q ss_pred             ---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 ---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 ---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                               ...++.++++||.+||+.||.+|||    ++|+++||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t----~~~~l~hp~f  288 (288)
T cd07871         245 YRAQPLINHAPRLDTDGIDLLSSLLLYETKSRIS----AEAALRHSYF  288 (288)
T ss_pred             cCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCC----HHHHhcCCCC
Confidence                     1245678999999999999999999    9999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-48  Score=364.29  Aligned_cols=259  Identities=25%  Similarity=0.368  Sum_probs=215.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----  157 (457)
                      ..|..++.||.|+||.|+.|.++    .+|+.||||.+.. .+......++..+|+++|+.++|+||+.+++++..    
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~----~t~~~VAIKKi~~-~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~   96 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDK----RTGEKVAIKKILN-PFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRD   96 (359)
T ss_pred             ceecccccccCcceeeEEEEEEc----CCCCEeehhhhhh-hhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccc
Confidence            35666899999999999999987    4889999999852 34455667888999999999999999999999865    


Q ss_pred             -CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          158 -PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       158 -~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                       -+.+|+|+|+| +.+|..+++.+  ..+++..+..++.||+.||.|+|+.+|+||||||.|+|++.+..+||||||+|+
T Consensus        97 ~f~DvYiV~elM-etDL~~iik~~--~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR  173 (359)
T KOG0660|consen   97 KFNDVYLVFELM-ETDLHQIIKSQ--QDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLAR  173 (359)
T ss_pred             ccceeEEehhHH-hhHHHHHHHcC--ccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEecccccee
Confidence             34689999999 89999999885  459999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                    +.....+
T Consensus       174 ~~~~~--------------------------------------------------------------------~~~~~mT  185 (359)
T KOG0660|consen  174 YLDKF--------------------------------------------------------------------FEDGFMT  185 (359)
T ss_pred             ecccc--------------------------------------------------------------------Ccccchh
Confidence            66422                                                                    0012234


Q ss_pred             cccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc--------------------
Q 012762          317 SFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL--------------------  375 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--------------------  375 (457)
                      .++.|.+|+|||++.. ..|+.+.||||+|||+.||++|++.|.|.+....+..|+.-..                    
T Consensus       186 eYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~  265 (359)
T KOG0660|consen  186 EYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIK  265 (359)
T ss_pred             cceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHH
Confidence            5688999999999864 4699999999999999999999999998765444433332111                    


Q ss_pred             ---CCCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          376 ---EFPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       376 ---~~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                         ..|.      .+..++.+.+|+.+||.+||.+|+|    ++|+|.||||..
T Consensus       266 slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRit----a~eAL~hPYl~~  315 (359)
T KOG0660|consen  266 SLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRIT----AEEALAHPYLAP  315 (359)
T ss_pred             hCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCC----HHHHhcChhhhh
Confidence               1111      1456678999999999999999999    999999999985

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=1.6e-47  Score=370.55  Aligned_cols=257  Identities=24%  Similarity=0.341  Sum_probs=210.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|+++    .+++.||+|++..... .......+.+|+++++.++|+||+++++++..++..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   75 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHK----ETKEIVAIKKFKDSEE-NEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKL   75 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEEC----CCCcEEEEEEEecccc-cccchhhHHHHHHHHHhCCCccccchhhhEecCCEE
Confidence            37999999999999999999986    4788999999976532 223445677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||++++.|..+...  ...+++..++.++.||+.||.|||+.||+||||||+||+++.++.+||+|||++......
T Consensus        76 ~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  153 (287)
T cd07848          76 YLVFEYVEKNMLELLEEM--PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             EEEEecCCCCHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccccccc
Confidence            999999988877655443  256999999999999999999999999999999999999999999999999998654211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                     .......||
T Consensus       154 ~~---------------------------------------------------------------------~~~~~~~~~  164 (287)
T cd07848         154 SN---------------------------------------------------------------------ANYTEYVAT  164 (287)
T ss_pred             cc---------------------------------------------------------------------ccccccccc
Confidence            00                                                                     001123589


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCCC---
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFPK---  379 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~~---  379 (457)
                      +.|+|||++.+..++.++|||||||++|||++|+.||.+.........+.....                   ..+.   
T Consensus       165 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (287)
T cd07848         165 RWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNH  244 (287)
T ss_pred             cccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccC
Confidence            999999999998899999999999999999999999988765444333222111                   0111   


Q ss_pred             --------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 --------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 --------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                              ...++.++.+||++||..||++||+    ++++++||||
T Consensus       245 ~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s----~~~~l~hp~f  287 (287)
T cd07848         245 PQSLERRYLGILSGVLLDLMKNLLKLNPTDRYL----TEQCLNHPAF  287 (287)
T ss_pred             cccHHHhhhcccCHHHHHHHHHHccCCcccCCC----HHHHhcCCCC
Confidence                    0125778999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.1e-48  Score=381.66  Aligned_cols=260  Identities=25%  Similarity=0.414  Sum_probs=233.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|.+++++|+|+||.+++++++.    .+..||+|.+...+...+.. .....|..++++++|||||.+.+.|..++.
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~----~~~~~vlK~I~l~~~t~~~r-~~A~~E~~lis~~~hP~iv~y~ds~~~~~~   77 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKS----DDKLYVLKKINLEKLTEPER-RSAIQEMDLLSKLLHPNIVEYKDSFEEDGQ   77 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhcc----CCceEEEEEEeccccCchhh-HHHHHHHHHHHhccCCCeeeeccchhcCCc
Confidence            5689999999999999999999885    56689999998776655443 366779999999999999999999998888


Q ss_pred             -EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          161 -SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       161 -~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                       +||||+||+||+|.+++..+++..++++.+..|+.||+.||.|||+++|+|||||+.|||++.++.|+|+|||+|+.+.
T Consensus        78 ~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~  157 (426)
T KOG0589|consen   78 LLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILN  157 (426)
T ss_pred             eEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcC
Confidence             9999999999999999999887889999999999999999999999999999999999999999999999999998886


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      +....                                                                      ..+.+
T Consensus       158 ~~~~~----------------------------------------------------------------------a~tvv  167 (426)
T KOG0589|consen  158 PEDSL----------------------------------------------------------------------ASTVV  167 (426)
T ss_pred             Cchhh----------------------------------------------------------------------hheec
Confidence            54311                                                                      12468


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.||+||.+.+.+|+.++|||||||++|||++-+.+|.+.+......++.... -.|.+...+.+++.||..||..+|
T Consensus       168 GTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~-~~Plp~~ys~el~~lv~~~l~~~P  246 (426)
T KOG0589|consen  168 GTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGL-YSPLPSMYSSELRSLVKSMLRKNP  246 (426)
T ss_pred             CCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhcc-CCCCCccccHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999988888888888776 445555688999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.||+    +.+||.+|....
T Consensus       247 ~~RPs----a~~LL~~P~l~~  263 (426)
T KOG0589|consen  247 EHRPS----ALELLRRPHLLR  263 (426)
T ss_pred             ccCCC----HHHHhhChhhhh
Confidence            99999    999999988763

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-49  Score=357.15  Aligned_cols=258  Identities=28%  Similarity=0.464  Sum_probs=224.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-----hhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-----RNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-----~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      .|.-.+.||.|..++|.+|.++    .+|..+|+|++.......     ....+.-+.|++||+++ .||+|+.+.++|+
T Consensus        18 ~y~pkeilgrgvss~vrRci~k----~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   18 KYEPKEILGRGVSSVVRRCIHK----ETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hcChHHHhcccchhhhhhhhhc----ccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            4667789999999999998877    588899999986543221     11234456699999997 7999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .+..+++|+|+|+.|.|.+++...  -.+++...+.+++|+++|++|||.++||||||||+|||++.+.++||+|||++.
T Consensus        94 s~sF~FlVFdl~prGELFDyLts~--VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~  171 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTSK--VTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFAC  171 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhhh--eeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceee
Confidence            999999999999999999999875  679999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+.+..                                                                       +..
T Consensus       172 ~l~~Ge-----------------------------------------------------------------------kLr  180 (411)
T KOG0599|consen  172 QLEPGE-----------------------------------------------------------------------KLR  180 (411)
T ss_pred             ccCCch-----------------------------------------------------------------------hHH
Confidence            765322                                                                       223


Q ss_pred             cccCCCCccCchhhcCC------CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC--CCCCCCChHHH
Q 012762          317 SFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAK  388 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~------~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  388 (457)
                      .+||||+|+|||.+...      +|+..+|+|++|||+|-|+.|.+||+-.....++..|+.+.+.+  |.+..++...+
T Consensus       181 elCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~K  260 (411)
T KOG0599|consen  181 ELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVK  260 (411)
T ss_pred             HhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHH
Confidence            46899999999999643      57889999999999999999999999877777888899998776  55678899999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |||.+||+.||.+|.|    +.|+|.||||..+
T Consensus       261 dLIsrlLqVdp~~Rit----ake~LaHpff~q~  289 (411)
T KOG0599|consen  261 DLISRLLQVDPTKRIT----AKEALAHPFFIQI  289 (411)
T ss_pred             HHHHHHHeeCchhccc----HHHHhcChHHHHH
Confidence            9999999999999999    9999999999753

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=8.9e-47  Score=390.47  Aligned_cols=254  Identities=22%  Similarity=0.333  Sum_probs=201.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC------CCCceEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH------PFLPTLY  152 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H------~nIv~l~  152 (457)
                      +..++|+++++||+|+||+||+|++.    .+++.||||+++...    ........|+++++.++|      .+|+.++
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~----~~~~~vAvK~i~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~  197 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDR----KRKEYCAVKIVRNVP----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQ  197 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEc----CCCeEEEEEEEecch----hhHHHHHHHHHHHHHHhhcCcccCcceeeeE
Confidence            34578999999999999999999986    378899999996431    123344567777777644      5588999


Q ss_pred             EEEEcC-CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCC-----
Q 012762          153 ATLDCP-RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDG-----  225 (457)
Q Consensus       153 ~~~~~~-~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~-----  225 (457)
                      ++|..+ .++|||||++ |++|.+++...  +.+++..++.++.||+.||.|||+ .|||||||||+|||++.++     
T Consensus       198 ~~~~~~~~~~~iv~~~~-g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~  274 (467)
T PTZ00284        198 RYFQNETGHMCIVMPKY-GPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDP  274 (467)
T ss_pred             EEEEcCCceEEEEEecc-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCccccc
Confidence            988764 5789999999 88888877664  679999999999999999999997 5999999999999998765     


Q ss_pred             -----------CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhc
Q 012762          226 -----------HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRR  294 (457)
Q Consensus       226 -----------~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (457)
                                 .+||+|||++.....                                                      
T Consensus       275 ~~~~~~~~~~~~vkl~DfG~~~~~~~------------------------------------------------------  300 (467)
T PTZ00284        275 VTNRALPPDPCRVRICDLGGCCDERH------------------------------------------------------  300 (467)
T ss_pred             ccccccCCCCceEEECCCCccccCcc------------------------------------------------------
Confidence                       499999997642210                                                      


Q ss_pred             cccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc
Q 012762          295 KKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA  374 (457)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~  374 (457)
                                         ....++||+.|||||++.+..|+.++|||||||++|||++|+.||.+....+.+..+....
T Consensus       301 -------------------~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~  361 (467)
T PTZ00284        301 -------------------SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTL  361 (467)
T ss_pred             -------------------ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHc
Confidence                               0113469999999999999999999999999999999999999998877655444333221


Q ss_pred             cCCCC----------------------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          375 LEFPK----------------------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       375 ~~~~~----------------------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..+|.                                        .....+.+.+||.+||.+||++||+    ++|+|+
T Consensus       362 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t----a~e~L~  437 (467)
T PTZ00284        362 GRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLN----ARQMTT  437 (467)
T ss_pred             CCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCC----HHHHhc
Confidence            11110                                        0001345779999999999999999    999999


Q ss_pred             CCCCCC
Q 012762          415 HQFFNG  420 (457)
Q Consensus       415 hp~f~~  420 (457)
                      ||||..
T Consensus       438 Hp~~~~  443 (467)
T PTZ00284        438 HPYVLK  443 (467)
T ss_pred             Cccccc
Confidence            999986

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=2.2e-46  Score=363.55  Aligned_cols=276  Identities=40%  Similarity=0.742  Sum_probs=235.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|.+.    .+++.||+|++.+...........+.+|+++|++++||||+++++++..++..
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   76 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHK----GSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNL   76 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEc----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeE
Confidence            47999999999999999999987    37889999999876655555567788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|.+++...  ..+++..+..++.||+.||.|||+.||+|+||+|.|||++.++.+||+|||++......
T Consensus        77 ~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  154 (290)
T cd05580          77 YLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR  154 (290)
T ss_pred             EEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC
Confidence            9999999999999988775  67999999999999999999999999999999999999999999999999987544211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                               .....|+
T Consensus       155 -------------------------------------------------------------------------~~~~~~~  161 (290)
T cd05580         155 -------------------------------------------------------------------------TYTLCGT  161 (290)
T ss_pred             -------------------------------------------------------------------------CCCCCCC
Confidence                                                                                     0123589


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||.+.+..++.++||||||+++|+|++|..||...........+......++.  .++..++++|.+||..||.+
T Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~~l~~~p~~  239 (290)
T cd05580         162 PEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPS--FFSPDAKDLIRNLLQVDLTK  239 (290)
T ss_pred             ccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCc--cCCHHHHHHHHHHccCCHHH
Confidence            9999999998888899999999999999999999999887766666666655554444  47899999999999999999


Q ss_pred             CCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCC
Q 012762          402 RMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPV  438 (457)
Q Consensus       402 Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~  438 (457)
                      |++.. ..++++++||||+.++|..+.  ....|+.|...
T Consensus       240 R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (290)
T cd05580         240 RLGNLKNGVNDIKNHPWFAGIDWIALLQRKIEAPFIPKVK  279 (290)
T ss_pred             ccCcccCCHHHHHcCcccccCCHHHHhhccCCCCccCCCC
Confidence            99321 239999999999999997664  34456665543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.3e-46  Score=372.38  Aligned_cols=260  Identities=26%  Similarity=0.386  Sum_probs=215.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++++.||+|+||.||+|+++    .++..||+|++....  .......+.+|+++|+.++||||+++++++..+
T Consensus         2 l~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   75 (331)
T cd06649           2 LKDDDFERISELGAGNGGVVTKVQHK----PSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   75 (331)
T ss_pred             CCcccceEEEeecCCCCEEEEEEEEC----CCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC
Confidence            45679999999999999999999987    478899999987542  223456788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +..++||||+++++|.+++...  ..+++..+..++.|++.||.|||+. +|+||||||+|||++.++.+||+|||++..
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  153 (331)
T cd06649          76 GEISICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (331)
T ss_pred             CEEEEEeecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccc
Confidence            9999999999999999998775  5689999999999999999999986 699999999999999999999999998754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .....                                                                        ...
T Consensus       154 ~~~~~------------------------------------------------------------------------~~~  161 (331)
T cd06649         154 LIDSM------------------------------------------------------------------------ANS  161 (331)
T ss_pred             ccccc------------------------------------------------------------------------ccc
Confidence            32110                                                                        012


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc------------------------
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR------------------------  373 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~------------------------  373 (457)
                      ..||..|+|||++.+..++.++|||||||++|||++|+.||......+... ++..                        
T Consensus       162 ~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (331)
T cd06649         162 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEA-IFGRPVVDGEEGEPHSISPRPRPPGRPV  240 (331)
T ss_pred             CCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HhcccccccccCCccccCcccccccccc
Confidence            358999999999999999999999999999999999999997654433221 1110                        


Q ss_pred             -----------------------ccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          374 -----------------------ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       374 -----------------------~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                             .........++.++++||.+||+.||++||+    +.+|++||||+....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt----~~ell~h~~~~~~~~  309 (331)
T cd06649         241 SGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERAD----LKMLMNHTFIKRSEV  309 (331)
T ss_pred             cccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCC----HHHHhcChHHhhccc
Confidence                                   0000011246788999999999999999999    999999999987443

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-49  Score=381.59  Aligned_cols=295  Identities=36%  Similarity=0.652  Sum_probs=262.8

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+.+.+++++..||-|+||.|=++..+.    ....+|+|+++|..+......+.+..|.+||..++.|.||++|-.|
T Consensus       414 ~a~v~l~dl~~iaTLGvGgFGRVELV~~~~----~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTf  489 (732)
T KOG0614|consen  414 FAQVKLSDLKRIATLGVGGFGRVELVKVNS----QKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTF  489 (732)
T ss_pred             hcccchhhhhhhhhcccCccceEEEEEecc----cchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHh
Confidence            345677899999999999999999998753    3336999999999999988889999999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+..++||+||-|-||.|+.++...  +.|.+..++.++..+++|++|||++|||.|||||+|++++.+|-+||.|||+|
T Consensus       490 rd~kyvYmLmEaClGGElWTiLrdR--g~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFA  567 (732)
T KOG0614|consen  490 RDSKYVYMLMEACLGGELWTILRDR--GSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFA  567 (732)
T ss_pred             ccchhhhhhHHhhcCchhhhhhhhc--CCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhH
Confidence            9999999999999999999988775  78999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +....                                                                       +.++
T Consensus       568 Kki~~-----------------------------------------------------------------------g~KT  576 (732)
T KOG0614|consen  568 KKIGS-----------------------------------------------------------------------GRKT  576 (732)
T ss_pred             HHhcc-----------------------------------------------------------------------CCce
Confidence            76653                                                                       2344


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      -+||||+.|.|||++...+++.++|.||||+++|||++|.+||.+.+....+..|+.+.-.+..+..++..+.+||.++.
T Consensus       577 wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LC  656 (732)
T KOG0614|consen  577 WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKKLC  656 (732)
T ss_pred             eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999988998888875444444568899999999999


Q ss_pred             hhCCCCCCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccccccc
Q 012762          396 VKDPTRRMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDLTTTN  447 (457)
Q Consensus       396 ~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  447 (457)
                      ..+|.+|.... ..+.+|.+|.||.++||..++  ...|||+|....-.|.+.-.
T Consensus       657 r~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~va~ptD~s~Fd  711 (732)
T KOG0614|consen  657 RDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIPSVANPTDVSNFD  711 (732)
T ss_pred             hcCcHhhhccccCChHHHHhhhhhhcCChhhhhhccCCCCccccCCCcccchhcc
Confidence            99999999864 579999999999999998774  57889998777666666543

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.8e-48  Score=380.04  Aligned_cols=330  Identities=30%  Similarity=0.525  Sum_probs=257.2

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ....+..-|..++.||-|+||.|.+++..    ++...||.|.+.|.++..++....++.|..||..-+.+-||+||..|
T Consensus       623 RaKMdKSmFvkik~iGvGAFGeV~Lv~Kv----DT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySF  698 (1034)
T KOG0608|consen  623 RAKMDKSMFVKIKTIGVGAFGEVCLVRKV----DTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSF  698 (1034)
T ss_pred             HhhccccceEEEeeecccccceeEEEeec----chhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEe
Confidence            34456677999999999999999999865    36789999999999999999999999999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ++.+.+|+||+|++||++-.++-+.  +.|.|..++.|+.++.+|++++|..|+|||||||+|||||.||++||+||||+
T Consensus       699 QDkdnLYFVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  699 QDKDNLYFVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             ccCCceEEEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecccc
Confidence            9999999999999999998887765  78999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCC-CCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDC-AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      .-+.=--....           -+..++ ........+.-.....|...+....   .               ..+...-
T Consensus       777 TGfRWTHdskY-----------Yq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra---~---------------~~h~r~~  827 (1034)
T KOG0608|consen  777 TGFRWTHDSKY-----------YQEGDHHRQDSMEPSPEWADISKCLKVLERRA---M---------------RQHQRIL  827 (1034)
T ss_pred             ccceecccccc-----------ccCCCccccccCCCchhhccccccchHHHHHH---H---------------hhhhhhh
Confidence            54321000000           000000 0111111111111111111111000   0               1111222


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh--cccCCCCCCCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ...++||+.|+|||++...+|+..+|.||.|||||||+.|++||......+...+++.  ..+.++....++.++.+||+
T Consensus       828 ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~l~~~~~~~ls~e~~~li~  907 (1034)
T KOG0608|consen  828 AHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNFLHIPYQGNLSKEALDLIQ  907 (1034)
T ss_pred             hhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhccccccccccCHHHHHHHH
Confidence            3467999999999999999999999999999999999999999988766555544432  34566777789999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      ++ ..+++.|.. +..++||..||||+++||..+++.+.|.||+..--.|
T Consensus       908 kL-c~sad~RLG-kng~d~vKaHpfFkgIDfsslRkq~ApYIP~ItHptD  955 (1034)
T KOG0608|consen  908 KL-CCSADSRLG-KNGADQVKAHPFFKGIDFSSLRKQRAPYIPRITHPTD  955 (1034)
T ss_pred             HH-hcChhhhhc-ccchhhhhcCccccccchHhhhhccCCcCccccCCCc
Confidence            86 568899988 4568899999999999999999999999998654444

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=9.7e-47  Score=373.69  Aligned_cols=263  Identities=24%  Similarity=0.362  Sum_probs=208.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC----
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP----  158 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~----  158 (457)
                      +|++.++||+|+||.||+|.++    .++..||||++.... ........+.+|+++|++++||||+++++++...    
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   75 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDT----HTGEKVAIKKINDVF-EHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRRE   75 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEEC----CCCCEEEEEEechhh-ccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCC
Confidence            5899999999999999999976    478899999986432 1222345677899999999999999999988543    


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       ..+|+||||| +++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        76 ~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~  152 (338)
T cd07859          76 FKDIYVVFELM-ESDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARV  152 (338)
T ss_pred             CceEEEEEecC-CCCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccc
Confidence             2479999999 67898888764  5699999999999999999999999999999999999999999999999999864


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                   ......
T Consensus       153 ~~~~~~~-------------------------------------------------------------------~~~~~~  165 (338)
T cd07859         153 AFNDTPT-------------------------------------------------------------------AIFWTD  165 (338)
T ss_pred             cccccCc-------------------------------------------------------------------cccccC
Confidence            3211000                                                                   000113


Q ss_pred             ccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc----------------------
Q 012762          318 FVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR----------------------  373 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~----------------------  373 (457)
                      .+||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+......+..+...                      
T Consensus       166 ~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  245 (338)
T cd07859         166 YVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLS  245 (338)
T ss_pred             CCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHH
Confidence            469999999999876  56899999999999999999999999876543322111110                      


Q ss_pred             ----ccCCC---CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          374 ----ALEFP---KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       374 ----~~~~~---~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                          ....+   ..+.++.++.++|.+||..||++||+    +.++++||||+++...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~e~l~hp~f~~~~~~  299 (338)
T cd07859         246 SMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPT----AEEALADPYFKGLAKV  299 (338)
T ss_pred             hhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCC----HHHHhcCchhhhcCcc
Confidence                00000   11346778999999999999999999    9999999999986663

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5e-47  Score=350.98  Aligned_cols=299  Identities=34%  Similarity=0.641  Sum_probs=255.1

Q ss_pred             CCCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCC
Q 012762           70 GNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL  148 (457)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nI  148 (457)
                      .......+.+.+.+|.++++||+|+|++|.+++++    .+.+.||+|++++.-+..+...+-++.|..+...- +||.+
T Consensus       238 m~g~~~~~~l~l~df~ll~vigrgsyakvl~~~~~----~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pfl  313 (593)
T KOG0695|consen  238 MDGIKISQGLGLQDFDLLRVIGRGSYAKVLLVRLK----KTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFL  313 (593)
T ss_pred             ccccccccccccccceeeeeecCcchhhhhheehc----ccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeE
Confidence            33445678899999999999999999999999988    47889999999988776666677778888888775 79999


Q ss_pred             ceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       149 v~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      |.++.+|+.+..+++|.||++||+|.-.++++  +.++++.++.+..+|+.||.|||++|||.||||.+|+|++..|++|
T Consensus       314 vglhscfqtesrlffvieyv~ggdlmfhmqrq--rklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghik  391 (593)
T KOG0695|consen  314 VGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIK  391 (593)
T ss_pred             EehhhhhcccceEEEEEEEecCcceeeehhhh--hcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCcee
Confidence            99999999999999999999999996666665  7899999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|+|+++..-..                                                                   
T Consensus       392 ltdygmcke~l~~-------------------------------------------------------------------  404 (593)
T KOG0695|consen  392 LTDYGMCKEGLGP-------------------------------------------------------------------  404 (593)
T ss_pred             ecccchhhcCCCC-------------------------------------------------------------------
Confidence            9999998654321                                                                   


Q ss_pred             cCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCC-------CChHH-HHHHHHhcccCCCCC
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG-------IDHEL-TLANVVARALEFPKE  380 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~-------~~~~~-~~~~~~~~~~~~~~~  380 (457)
                         +..+.+++||+.|+|||+++|..|+..+|.|+||++++||+.|+.||+-       .+.++ .+.-|+.+.++.|..
T Consensus       405 ---gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprs  481 (593)
T KOG0695|consen  405 ---GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRS  481 (593)
T ss_pred             ---CcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccce
Confidence               1123478999999999999999999999999999999999999999952       12233 345566777888876


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCC--cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccc
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~--~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  446 (457)
                        ++-.+..+++..|..||.+|..-.  ..+.++..|+||+.++|..+  ++..|||.|.....+++..-
T Consensus       482 --lsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~~d~~l~~f  549 (593)
T KOG0695|consen  482 --LSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQITDDYGLDNF  549 (593)
T ss_pred             --eehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccccccCcccc
Confidence              666678899999999999997632  35889999999999999988  56789999988777776543

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.3e-47  Score=358.52  Aligned_cols=262  Identities=29%  Similarity=0.400  Sum_probs=217.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~  159 (457)
                      ...|..+++||+|+||+||+|+.+    .+|+.||+|.+...... +..-....+|+.+|++|+|+| ||.+++++...+
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~----~~g~~VALKkirl~~~~-EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~   84 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSK----RTGKFVALKKIRLEFEE-EGVPSTAIREISLLKRLSHANHIVRLHDVIHTSN   84 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEe----cCCCEEEEEEEeccccc-cCCCchhhHHHHHHHHhCCCcceEEEEeeeeecc
Confidence            456888899999999999999988    48899999999765321 112334567999999999999 999999998877


Q ss_pred             ------cEEEEEeecCCCChHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          160 ------WSCLLTEFCPGGDLHVLRQRQPD--KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       160 ------~~~lV~E~~~~~sL~~~~~~~~~--~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                            .++|||||+ .-+|..++.....  ..++...++.+++||+.||+|||++||+||||||+||||+.+|.+||+|
T Consensus        85 ~~~~~~~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaD  163 (323)
T KOG0594|consen   85 NHRGIGKLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLAD  163 (323)
T ss_pred             cccccceEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeec
Confidence                  789999999 8899988887653  4688899999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+|+...-+..+                                                                   
T Consensus       164 FGlAra~~ip~~~-------------------------------------------------------------------  176 (323)
T KOG0594|consen  164 FGLARAFSIPMRT-------------------------------------------------------------------  176 (323)
T ss_pred             cchHHHhcCCccc-------------------------------------------------------------------
Confidence            9998744311110                                                                   


Q ss_pred             ccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-------------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-------------  377 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-------------  377 (457)
                         ...-++|..|+|||++.|. .|+..+||||+|||++||++++..|.+..+.+.+..|.......             
T Consensus       177 ---yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~  253 (323)
T KOG0594|consen  177 ---YTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPD  253 (323)
T ss_pred             ---ccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCcccccc
Confidence               1123689999999999988 58999999999999999999999999998877777766532111             


Q ss_pred             -----CCC----------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          378 -----PKE----------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       378 -----~~~----------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                           +..          +....+..+++.+||+++|.+|.+    +..+|.||||....
T Consensus       254 ~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~S----a~~al~h~yf~~~~  309 (323)
T KOG0594|consen  254 YKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRIS----AKGALTHPYFSELP  309 (323)
T ss_pred             ccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcC----HHHHhcChhhcccc
Confidence                 000          111237889999999999999999    99999999999863

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-49  Score=377.07  Aligned_cols=257  Identities=26%  Similarity=0.391  Sum_probs=219.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ..|+.++.||+|.||.||+|.+.    .+++.||+|++....  .......+..|+.+|..++++||.++|+.+..+..+
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~----~t~k~vAiKii~Le~--~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~L   86 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDN----KTKKVVAIKIIDLEE--AEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKL   86 (467)
T ss_pred             cccccchhccccccceeeeeeec----cccceEEEEEechhh--cchhhHHHHHHHHHHHhcCcchHHhhhhheeecccH
Confidence            35778899999999999999987    589999999998763  344566778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      +++||||.||++.++++..  ..+.+..+..++++++.||.|||..+.+|||||+.|||+..+|.|||+|||.+..+..-
T Consensus        87 wiiMey~~gGsv~~lL~~~--~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~  164 (467)
T KOG0201|consen   87 WIIMEYCGGGSVLDLLKSG--NILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNT  164 (467)
T ss_pred             HHHHHHhcCcchhhhhccC--CCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeech
Confidence            9999999999999999874  44588899999999999999999999999999999999999999999999997655321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                            ..+..+|+||
T Consensus       165 ----------------------------------------------------------------------~~rr~tfvGT  174 (467)
T KOG0201|consen  165 ----------------------------------------------------------------------VKRRKTFVGT  174 (467)
T ss_pred             ----------------------------------------------------------------------hhcccccccc
Confidence                                                                                  1122478999


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|||||++++..|+.++||||||++.+||++|.+||........+..|-... .......+++.+++||..||..||+.
T Consensus       175 PfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~-PP~L~~~~S~~~kEFV~~CL~k~P~~  253 (467)
T KOG0201|consen  175 PFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSA-PPRLDGDFSPPFKEFVEACLDKNPEF  253 (467)
T ss_pred             ccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCC-CCccccccCHHHHHHHHHHhhcCccc
Confidence            99999999999899999999999999999999999998866532222222111 11122368889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ||+    |.+||+|+|.+..
T Consensus       254 Rps----A~~LLKh~FIk~a  269 (467)
T KOG0201|consen  254 RPS----AKELLKHKFIKRA  269 (467)
T ss_pred             CcC----HHHHhhhHHHHhc
Confidence            999    9999999999874

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.9e-46  Score=363.55  Aligned_cols=257  Identities=26%  Similarity=0.376  Sum_probs=208.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEE--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLD--  156 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~--  156 (457)
                      .+|++++.||+|+||+||+|++..   ..++.||+|++...... ......+.+|+++++.+   +||||+++++++.  
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~---~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~   76 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   76 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcC---CCCeEEEEEEEecccCC-CCchHHHHHHHHHHHhhcccCCCCcceEEEEEecc
Confidence            379999999999999999998753   25678999998754322 22234455677777766   6999999999885  


Q ss_pred             ---cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          157 ---CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       157 ---~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                         ....+++||||+ .++|..++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        77 ~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T cd07862          77 RTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFG  155 (290)
T ss_pred             cCCCCCcEEEEEccC-CCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEcccc
Confidence               345689999999 5789888877666679999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.......                                                                       
T Consensus       156 ~~~~~~~~~-----------------------------------------------------------------------  164 (290)
T cd07862         156 LARIYSFQM-----------------------------------------------------------------------  164 (290)
T ss_pred             ceEeccCCc-----------------------------------------------------------------------
Confidence            975432110                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----CC---------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----PK---------  379 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----~~---------  379 (457)
                      ......||+.|+|||++.+..++.++|||||||++|||++|.+||.+....+.+..++......     +.         
T Consensus       165 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  244 (290)
T cd07862         165 ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAF  244 (290)
T ss_pred             ccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhc
Confidence            0112358999999999998889999999999999999999999999887776666665432100     00         


Q ss_pred             -----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 -----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 -----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                                 .+.++..+++|+.+||+.||++||+    +.++|+||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~~~l~hp~f  290 (290)
T cd07862         245 HSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYF  290 (290)
T ss_pred             cCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCC----HHHHhcCCCC
Confidence                       1246678899999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.7e-46  Score=379.15  Aligned_cols=254  Identities=22%  Similarity=0.327  Sum_probs=205.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+...+|.++++||+|+||.||+|.++    .+++.||+|....         ..+.+|+++|+.|+||||++++++|..
T Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~d~----~~~~~vaiK~~~~---------~~~~~E~~il~~l~HpnIv~~~~~~~~  154 (391)
T PHA03212         88 GIEKAGFSILETFTPGAEGFAFACIDN----KTCEHVVIKAGQR---------GGTATEAHILRAINHPSIIQLKGTFTY  154 (391)
T ss_pred             ccccCCcEEEEEEcCCCCeEEEEEEEC----CCCCEEEEechhh---------hhhHHHHHHHHhCCCCCCCCEeEEEEE
Confidence            355678999999999999999999987    4788999997532         235679999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +...|+|||++ +++|..++...  ..+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+++.
T Consensus       155 ~~~~~lv~e~~-~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        155 NKFTCLILPRY-KTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACF  231 (391)
T ss_pred             CCeeEEEEecC-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccc
Confidence            99999999999 67888777664  5689999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                     .....
T Consensus       232 ~~~~~~---------------------------------------------------------------------~~~~~  242 (391)
T PHA03212        232 PVDINA---------------------------------------------------------------------NKYYG  242 (391)
T ss_pred             cccccc---------------------------------------------------------------------ccccc
Confidence            221100                                                                     01113


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-------hHHHHHHHHhcccC--------------
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-------HELTLANVVARALE--------------  376 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-------~~~~~~~~~~~~~~--------------  376 (457)
                      ++||+.|+|||++.+..++.++|||||||++|||++|..||....       ....+..++.....              
T Consensus       243 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  322 (391)
T PHA03212        243 WAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLD  322 (391)
T ss_pred             ccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHH
Confidence            469999999999999999999999999999999999998875422       11112222111100              


Q ss_pred             ------------CCC-------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          377 ------------FPK-------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       377 ------------~~~-------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                  .+.       ...++.++.+||.+||+.||++|||    +.|+|+||||+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpt----a~elL~hp~f~~  381 (391)
T PHA03212        323 EIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPS----AEALLDFAAFQD  381 (391)
T ss_pred             HHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCC----HHHHhcChhhcc
Confidence                        000       0124567899999999999999999    999999999986

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=2.4e-45  Score=358.97  Aligned_cols=295  Identities=36%  Similarity=0.674  Sum_probs=239.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||.||+|.++    ..++.||+|.+.+...........+..|+++++.++|+||+++++.+..++++
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~----~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   76 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHK----ETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHL   76 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEEC----CCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEE
Confidence            37999999999999999999987    47889999999876544444556777899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||++|++|..++...  +.+++..+..++.|++.||.|||+.|++||||||+||+++.++.++|+|||+++.....
T Consensus        77 ~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~  154 (305)
T cd05609          77 CMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMS  154 (305)
T ss_pred             EEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcC
Confidence            9999999999999998765  56899999999999999999999999999999999999999999999999987643211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ....... ...                                     .                 ............|+
T Consensus       155 ~~~~~~~-~~~-------------------------------------~-----------------~~~~~~~~~~~~~~  179 (305)
T cd05609         155 LTTNLYE-GHI-------------------------------------E-----------------KDTREFLDKQVCGT  179 (305)
T ss_pred             ccccccc-ccc-------------------------------------c-----------------cchhhccccCCccC
Confidence            0000000 000                                     0                 00000001123578


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-CCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-PSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~L~~dP~  400 (457)
                      ..|+|||.+.+..++.++|||||||++|||++|..||.+....+....+.......+.. ..++.++.++|.+||+.||+
T Consensus       180 ~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  259 (305)
T cd05609         180 PEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPL  259 (305)
T ss_pred             ccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChh
Confidence            89999999998889999999999999999999999999877777777766665444433 25788999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV  438 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~  438 (457)
                      +||++. .+.++++||||...+|..+......++|++.
T Consensus       260 ~R~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~  296 (305)
T cd05609         260 ERLGTG-GAFEVKQHRFFLGLDWNGLLRQKAEFIPQLE  296 (305)
T ss_pred             hccCcc-CHHHHHhCccccCCCHHHHhhcCCCCCCCCC
Confidence            999842 3789999999999999988888888888773

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2e-47  Score=378.04  Aligned_cols=259  Identities=20%  Similarity=0.315  Sum_probs=214.6

Q ss_pred             CCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEE
Q 012762           73 NNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLY  152 (457)
Q Consensus        73 ~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~  152 (457)
                      ....|++..+++.+...||+|.||+||+|.|..       .||||+++......+ ..+.|++|+.+|++-+|.||+-+.
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG-------dVAVK~Lnv~~pt~~-qlqaFKnEVa~lkkTRH~NIlLFM  454 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG-------DVAVKLLNVDDPTPE-QLQAFKNEVAVLKKTRHENILLFM  454 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeeccccc-------ceEEEEEecCCCCHH-HHHHHHHHHHHHhhcchhhheeee
Confidence            446889999999999999999999999999974       499999987765544 888999999999999999999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                      |++..+.. .||+.+|+|-+|+.+++... ..|.....+.|++||++|+.|||.++|||||||..||||.++++|||+||
T Consensus       455 G~~~~p~~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDF  532 (678)
T KOG0193|consen  455 GACMNPPL-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDF  532 (678)
T ss_pred             hhhcCCce-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecc
Confidence            99998877 89999999999999988754 67999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++..-..-                                                                    ...
T Consensus       533 GLatvk~~w--------------------------------------------------------------------~g~  544 (678)
T KOG0193|consen  533 GLATVKTRW--------------------------------------------------------------------SGE  544 (678)
T ss_pred             cceeeeeee--------------------------------------------------------------------ccc
Confidence            997322100                                                                    000


Q ss_pred             cccccccCCCCccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC----CCCCCh
Q 012762          313 VRSMSFVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK----EPSVPG  385 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~  385 (457)
                      .....-.|...|||||+++.   .+|++.+|||||||++|||++|..||.. .+.+.+..++-+.+-.+.    ...++.
T Consensus       545 ~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi-~~~dqIifmVGrG~l~pd~s~~~s~~pk  623 (678)
T KOG0193|consen  545 QQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI-QNRDQIIFMVGRGYLMPDLSKIRSNCPK  623 (678)
T ss_pred             cccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC-CChhheEEEecccccCccchhhhccCHH
Confidence            11112248899999999974   4689999999999999999999999994 444333333433333332    245778


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++++|+..||.+++++||.    +.+||.
T Consensus       624 ~mk~Ll~~C~~~~~~eRP~----F~~il~  648 (678)
T KOG0193|consen  624 AMKRLLSDCWKFDREERPL----FPQLLS  648 (678)
T ss_pred             HHHHHHHHHHhcCcccCcc----HHHHHH
Confidence            9999999999999999999    666654

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.2e-47  Score=357.41  Aligned_cols=253  Identities=27%  Similarity=0.447  Sum_probs=209.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--C-
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--R-  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~-  159 (457)
                      .|.-.+++|.|+||+||.|....    +++.||||.+....       ..--+|++||++++|||||++..+|...  . 
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e----~~~~vAIKKv~~d~-------r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d   93 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRE----TEEEVAIKKVLQDK-------RYKNRELQIMRKLDHPNIVRLLYFFSSSTESD   93 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcC----CCceeEEEEecCCC-------CcCcHHHHHHHhcCCcCeeeEEEEEEecCCCc
Confidence            58888999999999999999873    58899999885432       1223599999999999999999888432  2 


Q ss_pred             --cEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDL  234 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~  234 (457)
                        +..+||||+ -.+|...++.  ..+..++...++.+..||++||.|||+.||+||||||.|+|+|.+ |.+||||||.
T Consensus        94 ~~~lnlVleym-P~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGS  172 (364)
T KOG0658|consen   94 EVYLNLVLEYM-PETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGS  172 (364)
T ss_pred             hhHHHHHHHhc-hHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCc
Confidence              457899999 7889887774  134679999999999999999999999999999999999999976 9999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      |+.+.....                                                                       
T Consensus       173 AK~L~~~ep-----------------------------------------------------------------------  181 (364)
T KOG0658|consen  173 AKVLVKGEP-----------------------------------------------------------------------  181 (364)
T ss_pred             ceeeccCCC-----------------------------------------------------------------------
Confidence            987653221                                                                       


Q ss_pred             cccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-----------------C
Q 012762          315 SMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-----------------E  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-----------------~  376 (457)
                      ..++.-|..|+|||.+.|.. |+.+.||||.|||+.||+-|++.|.|.+..+.+..|+....                 .
T Consensus       182 niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~  261 (364)
T KOG0658|consen  182 NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFK  261 (364)
T ss_pred             ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCccccccc
Confidence            22467899999999999875 99999999999999999999999999887777666654211                 1


Q ss_pred             CCC----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          377 FPK----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       377 ~~~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      +|.          ....++++.+|+.++|+++|.+|.+    +.|++.||||+...
T Consensus       262 ~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~----~~~~l~h~fFdelr  313 (364)
T KOG0658|consen  262 FPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLS----ALEALAHPFFDELR  313 (364)
T ss_pred             CcccccccceeecccCCCHHHHHHHHHHhccChhhcCC----HHHHhcchhhHHhh
Confidence            111          1345788999999999999999999    99999999998743

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=7.2e-46  Score=367.31  Aligned_cols=259  Identities=25%  Similarity=0.379  Sum_probs=212.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.++||+|+||.||+|.++    .++..+|+|++....  .......+.+|+++|+.++|+||+++++++..+
T Consensus         2 l~~~~y~~~~~lg~g~~g~V~~~~~~----~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   75 (333)
T cd06650           2 LKDDDFEKISELGAGNGGVVFKVSHK----PSGLIMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   75 (333)
T ss_pred             cchhhhheeccccCCCCEEEEEEEEC----CCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC
Confidence            44578999999999999999999886    478899999986542  223456678899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +++||||||+.+++|.+++...  +.+++..+..++.|++.||.|||+. +|+||||||+|||++.++.+||+|||++..
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~  153 (333)
T cd06650          76 GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  153 (333)
T ss_pred             CEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchh
Confidence            9999999999999999998764  5689999999999999999999975 799999999999999999999999998753


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .....                                                                        ...
T Consensus       154 ~~~~~------------------------------------------------------------------------~~~  161 (333)
T cd06650         154 LIDSM------------------------------------------------------------------------ANS  161 (333)
T ss_pred             hhhhc------------------------------------------------------------------------ccc
Confidence            32100                                                                        012


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH---------------------------
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV---------------------------  370 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~---------------------------  370 (457)
                      ..|+..|+|||++.+..++.++|||||||++|+|++|+.||...........+                           
T Consensus       162 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (333)
T cd06650         162 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSY  241 (333)
T ss_pred             CCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhh
Confidence            35899999999999988999999999999999999999999765433221110                           


Q ss_pred             -----------------HhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          371 -----------------VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       371 -----------------~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                       ............++.++++||.+||+.||++||+    +.|+++||||+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt----~~ell~h~~~~~~  305 (333)
T cd06650         242 GPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRS  305 (333)
T ss_pred             cccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcC----HHHHhhCHHHhcC
Confidence                             0000000001135678999999999999999999    9999999999863

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.3e-45  Score=373.55  Aligned_cols=264  Identities=22%  Similarity=0.299  Sum_probs=212.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +...+|.+++.||+|+||.||+|..+.  ...++.||+|.+...        ....+|+++|++++|+||+++++++...
T Consensus        89 ~~~~~y~i~~~Lg~G~~g~Vy~~~~~~--~~~~~~v~vK~~~~~--------~~~~~E~~il~~l~h~~iv~~~~~~~~~  158 (392)
T PHA03207         89 VVRMQYNILSSLTPGSEGEVFVCTKHG--DEQRKKVIVKAVTGG--------KTPGREIDILKTISHRAIINLIHAYRWK  158 (392)
T ss_pred             hccCceEEEEeecCCCCeEEEEEEEcC--CccceeEEEEecccc--------ccHHHHHHHHHhcCCCCccceeeeEeeC
Confidence            344679999999999999999997642  235778999998643        2245699999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...|+|||++ +++|..++...  ..+++..++.++.||+.||.|||++|||||||||+|||++.++.++|+|||++...
T Consensus       159 ~~~~lv~e~~-~~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~  235 (392)
T PHA03207        159 STVCMVMPKY-KCDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKL  235 (392)
T ss_pred             CEEEEEehhc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCcccccc
Confidence            9999999999 57888777543  67999999999999999999999999999999999999999999999999998644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                    .....+
T Consensus       236 ~~~~~~--------------------------------------------------------------------~~~~~~  247 (392)
T PHA03207        236 DAHPDT--------------------------------------------------------------------PQCYGW  247 (392)
T ss_pred             Cccccc--------------------------------------------------------------------cccccc
Confidence            321100                                                                    011134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH---HHHHHHHhccc----CCCC------------
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---LTLANVVARAL----EFPK------------  379 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---~~~~~~~~~~~----~~~~------------  379 (457)
                      +||+.|+|||++.+..|+.++|||||||++|||++|+.||.+....   ..+..++....    .++.            
T Consensus       248 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (392)
T PHA03207        248 SGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQ  327 (392)
T ss_pred             ccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHh
Confidence            6999999999999999999999999999999999999999765321   22222221100    0000            


Q ss_pred             ----------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          380 ----------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       380 ----------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                                      ...++.++.++|.+||..||++||+    +.++|+||||....|+.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rps----a~e~l~~p~f~~~~~~~~~  387 (392)
T PHA03207        328 YAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPS----AQDILSLPLFTKEPINLLN  387 (392)
T ss_pred             hcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCC----HHHHhhCchhhccchhhhc
Confidence                            0134567899999999999999999    9999999999998888663

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=8.9e-46  Score=367.23  Aligned_cols=264  Identities=20%  Similarity=0.295  Sum_probs=209.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      |.+..++|++.++||+|+||.||+|.+...+ ...+..||+|++....  .......+..|+++|+.+ +||||++++++
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~~~~~   79 (338)
T cd05102           2 WEFPRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA--TASEHKALMSELKILIHIGNHLNVVNLLGA   79 (338)
T ss_pred             cccchhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc--chHHHHHHHHHHHHHHHhccCcceeeEEeE
Confidence            5677789999999999999999999864322 2356789999986432  223345678899999999 89999999998


Q ss_pred             EEcC-CcEEEEEeecCCCChHHHHHhCC----------------------------------------------------
Q 012762          155 LDCP-RWSCLLTEFCPGGDLHVLRQRQP----------------------------------------------------  181 (457)
Q Consensus       155 ~~~~-~~~~lV~E~~~~~sL~~~~~~~~----------------------------------------------------  181 (457)
                      +... +.+|+||||+++|+|.+++....                                                    
T Consensus        80 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
T cd05102          80 CTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNP  159 (338)
T ss_pred             ecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCccccc
Confidence            8654 46899999999999998887532                                                    


Q ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCC
Q 012762          182 --------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP  253 (457)
Q Consensus       182 --------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~  253 (457)
                              ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++........         
T Consensus       160 ~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~---------  230 (338)
T cd05102         160 PQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY---------  230 (338)
T ss_pred             chhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcch---------
Confidence                    124778889999999999999999999999999999999999999999999998644211000         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC
Q 012762          254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE  333 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  333 (457)
                                                                                 .......++..|+|||++.+.
T Consensus       231 -----------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~  251 (338)
T cd05102         231 -----------------------------------------------------------VRKGSARLPLKWMAPESIFDK  251 (338)
T ss_pred             -----------------------------------------------------------hcccCCCCCccccCcHHhhcC
Confidence                                                                       000112367889999999998


Q ss_pred             CCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHH
Q 012762          334 GHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       334 ~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~l  412 (457)
                      .++.++|||||||++|||++ |..||.+......+...+...........++.++.+|+.+||..||++||+    +.+|
T Consensus       252 ~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs----~~el  327 (338)
T cd05102         252 VYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPT----FSAL  327 (338)
T ss_pred             CCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcC----HHHH
Confidence            99999999999999999996 999998765444444444333333334467889999999999999999999    7777


Q ss_pred             hc
Q 012762          413 KR  414 (457)
Q Consensus       413 l~  414 (457)
                      ++
T Consensus       328 ~~  329 (338)
T cd05102         328 VE  329 (338)
T ss_pred             HH
Confidence            65

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.8e-46  Score=381.50  Aligned_cols=258  Identities=24%  Similarity=0.372  Sum_probs=206.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ...+|++.++||+|+||+||+|.+.    .+++.||||++....       ....+|+.+|+.++|+||+++++++... 
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~----~~~~~vAiK~i~~~~-------~~~~~Ei~il~~l~h~niv~l~~~~~~~~  132 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICI----DTSEKVAIKKVLQDP-------QYKNRELLIMKNLNHINIIFLKDYYYTEC  132 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEEC----CCCCEEEEEEEecCc-------chHHHHHHHHHhcCCCCCcceeeeEeecc
Confidence            3468999999999999999999976    478899999885431       2234699999999999999999887432 


Q ss_pred             -------CcEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEE
Q 012762          159 -------RWSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIM  228 (457)
Q Consensus       159 -------~~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vk  228 (457)
                             ..+++||||+. ++|..++..  .....+++..++.++.||+.||.|||++||+||||||+||||+.++ .+|
T Consensus       133 ~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vk  211 (440)
T PTZ00036        133 FKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLK  211 (440)
T ss_pred             cccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCcee
Confidence                   24679999995 577666543  2346799999999999999999999999999999999999998664 799


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+++......                                                                  
T Consensus       212 L~DFGla~~~~~~~------------------------------------------------------------------  225 (440)
T PTZ00036        212 LCDFGSAKNLLAGQ------------------------------------------------------------------  225 (440)
T ss_pred             eeccccchhccCCC------------------------------------------------------------------
Confidence            99999986442110                                                                  


Q ss_pred             cCCccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-------------
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-------------  374 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-------------  374 (457)
                           .....+||+.|+|||++.+. .|+.++|||||||++|||++|.+||.+....+.+..++...             
T Consensus       226 -----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  300 (440)
T PTZ00036        226 -----RSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNP  300 (440)
T ss_pred             -----CcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhch
Confidence                 01134689999999998765 58999999999999999999999999877665555554321             


Q ss_pred             ----cCCCC----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          375 ----LEFPK----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       375 ----~~~~~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                          +.++.          +...+.++++||.+||..||.+||+    +.|+|+||||+.+...
T Consensus       301 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~t----a~e~l~hp~f~~~~~~  360 (440)
T PTZ00036        301 NYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLN----PIEALADPFFDDLRDP  360 (440)
T ss_pred             hhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcC----HHHHhCChhHHhhhcc
Confidence                11111          1235678999999999999999999    9999999999986554

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=8e-45  Score=389.49  Aligned_cols=152  Identities=38%  Similarity=0.623  Sum_probs=138.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|++.    .+++.||||++.+...........+..|+++++.++|+||+++++++....+
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~----~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~   78 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKK----NNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANN   78 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCE
Confidence            578999999999999999999986    3788999999987665555556778889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +||||||+.|++|..++...  +.+++..++.++.||+.||+|||.+|||||||||+||||+.++.+||+|||+++..
T Consensus        79 ~~lVmEy~~g~~L~~li~~~--~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~  154 (669)
T cd05610          79 VYLVMEYLIGGDVKSLLHIY--GYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVT  154 (669)
T ss_pred             EEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccc
Confidence            99999999999999998764  56899999999999999999999999999999999999999999999999998754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=2.4e-45  Score=367.35  Aligned_cols=256  Identities=26%  Similarity=0.419  Sum_probs=204.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.++    .+|+.||+|++.+.. ........+.+|+.+++.++||||+++++++...+
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   93 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDT----VLGINVAVKKLSRPF-QNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQK   93 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEc----CCCceeEEEEecccc-cchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC
Confidence            3578999999999999999999876    478899999996542 22334556778999999999999999999986543


Q ss_pred             ------cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          160 ------WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       160 ------~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                            .+|+||||++ ++|...+.    ..+++..+..++.||+.||.|||++||+||||||+|||++.+|.+||+|||
T Consensus        94 ~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg  168 (359)
T cd07876          94 SLEEFQDVYLVMELMD-ANLCQVIH----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  168 (359)
T ss_pred             CccccceeEEEEeCCC-cCHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCC
Confidence                  5799999995 56655553    348899999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                       
T Consensus       169 ~a~~~~~~~-----------------------------------------------------------------------  177 (359)
T cd07876         169 LARTACTNF-----------------------------------------------------------------------  177 (359)
T ss_pred             CccccccCc-----------------------------------------------------------------------
Confidence            975332100                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--------------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--------------------  373 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--------------------  373 (457)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......++..                    
T Consensus       178 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (359)
T cd07876         178 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYV  257 (359)
T ss_pred             cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            001235899999999999999999999999999999999999999876543332222111                    


Q ss_pred             --ccCCC------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          374 --ALEFP------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       374 --~~~~~------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                        ....+                  .....+..+++||.+||..||++||+    +.|+|+||||..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~  320 (359)
T cd07876         258 ENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRIS----VDEALRHPYITV  320 (359)
T ss_pred             hhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCC----HHHHhcCchhhh
Confidence              00000                  00123567899999999999999999    999999999984

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2.3e-45  Score=353.87  Aligned_cols=271  Identities=34%  Similarity=0.609  Sum_probs=221.4

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||+|+||+||+|.+.    .+|+.||+|++.+...........+..|+++|+.++||||+++++++...+..|+||||++
T Consensus         1 lg~g~~g~vy~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   76 (277)
T cd05577           1 LGKGGFGEVCACQVK----ATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMN   76 (277)
T ss_pred             CCCCCceeEEEEEEc----CCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCC
Confidence            699999999999876    3788999999987655444455566789999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      +++|..++.......+++..++.++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++........      
T Consensus        77 ~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~------  150 (277)
T cd05577          77 GGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK------  150 (277)
T ss_pred             CCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc------
Confidence            99999888776545799999999999999999999999999999999999999999999999998754321000      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                       .....|+..|+|||+
T Consensus       151 -----------------------------------------------------------------~~~~~~~~~y~~PE~  165 (277)
T cd05577         151 -----------------------------------------------------------------IKGRAGTPGYMAPEV  165 (277)
T ss_pred             -----------------------------------------------------------------cccccCCCCcCCHHH
Confidence                                                                             001247889999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      +.+..++.++|||||||++|+|++|+.||...........+....  ........+++++.++|.+||+.||++||+++.
T Consensus       166 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         166 LQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             hcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence            988889999999999999999999999997754321111211111  122223457889999999999999999996655


Q ss_pred             -ChHHHhcCCCCCCCCchhhhc--cCCCCCC
Q 012762          408 -GATAIKRHQFFNGVNWALLRC--AKPPFIP  435 (457)
Q Consensus       408 -~~~~ll~hp~f~~~~~~~~~~--~~~~~~~  435 (457)
                       .+.++++||||...+|..+..  ..|||+|
T Consensus       246 ~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~  276 (277)
T cd05577         246 GSADEVREHPLFKDLNWRRLEAGMLEPPFIP  276 (277)
T ss_pred             ccHHHHHhChhhhcCChhhhhcCCCCCCCCC
Confidence             599999999999999987753  3466665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.7e-45  Score=359.20  Aligned_cols=260  Identities=23%  Similarity=0.363  Sum_probs=210.2

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|.+.++||+|+||+||+|+++    .+++.||+|+++....  ......+.+|+++++.++|+||+++++++..++
T Consensus         4 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   77 (309)
T cd07872           4 KMETYIKLEKLGEGTYATVFKGRSK----LTENLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDK   77 (309)
T ss_pred             CCCceEEEEEecccCCEEEEEEEec----CCCCeEEEEEeecccc--CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCC
Confidence            4578999999999999999999876    3678899999875432  223345667999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||++ ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        78 ~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  155 (309)
T cd07872          78 SLTLVFEYLD-KDLKQYMDDC-GNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKS  155 (309)
T ss_pred             eEEEEEeCCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecC
Confidence            9999999995 5787776554 2458999999999999999999999999999999999999999999999999975432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       156 ~~~~~----------------------------------------------------------------------~~~~~  165 (309)
T cd07872         156 VPTKT----------------------------------------------------------------------YSNEV  165 (309)
T ss_pred             CCccc----------------------------------------------------------------------ccccc
Confidence            11000                                                                      00124


Q ss_pred             CCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-------------------cCCC-
Q 012762          320 GTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-------------------LEFP-  378 (457)
Q Consensus       320 gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-------------------~~~~-  378 (457)
                      +|..|+|||++.+. .++.++|||||||++|+|++|+.||.+.+..+....+....                   ..++ 
T Consensus       166 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (309)
T cd07872         166 VTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPK  245 (309)
T ss_pred             ccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCc
Confidence            78999999998764 58999999999999999999999998876554444333211                   0111 


Q ss_pred             --------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          379 --------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       379 --------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                              ....++.++++||.+||..||.+|||    +.|+++||||+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t----~~e~l~h~~~~~~  292 (309)
T cd07872         246 YKPQPLINHAPRLDTEGIELLTKFLQYESKKRIS----AEEAMKHAYFRSL  292 (309)
T ss_pred             cCCCchhhhccCCCHHHHHHHHHhccCChhhCCC----HHHHhcChhhhhc
Confidence                    11246788999999999999999999    9999999999853

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=3e-45  Score=354.76  Aligned_cols=255  Identities=26%  Similarity=0.386  Sum_probs=205.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEEc--
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLDC--  157 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~~--  157 (457)
                      +|++.+.||+|+||+||+|+++    .+++.||+|+++..... ........+|+++++.+   +||||+++++++..  
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~----~~~~~~aiK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~   75 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDP----HSGHFVALKSVRVQTNE-DGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSR   75 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEEC----CCCcEEEEEEeccCcCC-CCCchHHHHHHHHHHHhhhcCCCCeeeeeeeecccc
Confidence            5899999999999999999987    47889999998754221 12223445677777665   79999999998864  


Q ss_pred             ---CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          158 ---PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       158 ---~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                         ....++||||+. ++|..++.......+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||+
T Consensus        76 ~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~  154 (288)
T cd07863          76 TDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGL  154 (288)
T ss_pred             CCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCc
Confidence               345799999995 5888888776556799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       155 ~~~~~~~~~-----------------------------------------------------------------------  163 (288)
T cd07863         155 ARIYSCQMA-----------------------------------------------------------------------  163 (288)
T ss_pred             cccccCccc-----------------------------------------------------------------------
Confidence            754321100                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----CC-----------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----FP-----------  378 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----~~-----------  378 (457)
                      .....||..|+|||++.+..++.++|||||||++|+|++|.+||.+......+.++......     ++           
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (288)
T cd07863         164 LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFS  243 (288)
T ss_pred             CCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccC
Confidence            01235899999999999888999999999999999999999999887666555554432100     00           


Q ss_pred             ---------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ---------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ---------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                               ..+.++..+.++|.+||+.||++||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~~~l~hp~f  288 (288)
T cd07863         244 PRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRIS----AFRALQHPFF  288 (288)
T ss_pred             CCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCC----HHHHhcCCCC
Confidence                     01246778899999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=4.8e-45  Score=365.78  Aligned_cols=256  Identities=25%  Similarity=0.383  Sum_probs=206.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ..++|++.+.||+|+||.||+|.+.    ..++.||||++.+.. ........+.+|+.+++.++|+||+++++++... 
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~   96 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDA----ILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQK   96 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEEC----CCCcEEEEEEeCccc-cCchhHHHHHHHHHHHHhcCCCCccccceeecccc
Confidence            3578999999999999999999876    478889999986532 2223445677899999999999999999987543 


Q ss_pred             -----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          159 -----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       159 -----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                           ..+|+||||++ ++|...+..    .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        97 ~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG  171 (364)
T cd07875          97 SLEEFQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  171 (364)
T ss_pred             cccccCeEEEEEeCCC-CCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCC
Confidence                 35799999994 577666643    47889999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.......                                                                      
T Consensus       172 ~a~~~~~~~~----------------------------------------------------------------------  181 (364)
T cd07875         172 LARTAGTSFM----------------------------------------------------------------------  181 (364)
T ss_pred             CccccCCCCc----------------------------------------------------------------------
Confidence            9854321100                                                                      


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----------------  376 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----------------  376 (457)
                       .....||..|+|||++.+..++.++|||||||++|+|++|+.||.+.+.......++.....                 
T Consensus       182 -~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (364)
T cd07875         182 -MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYV  260 (364)
T ss_pred             -ccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHH
Confidence             01235899999999999999999999999999999999999999887765555444331110                 


Q ss_pred             -------------------CCC----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          377 -------------------FPK----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       377 -------------------~~~----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                         ++.    ....+..+++||.+||..||.+|||    +.|+|+||||+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t----~~e~L~hp~~~~  323 (364)
T cd07875         261 ENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS----VDEALQHPYINV  323 (364)
T ss_pred             hhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCC----HHHHhcCccccc
Confidence                               000    0112457899999999999999999    999999999973

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=5.2e-45  Score=377.88  Aligned_cols=261  Identities=25%  Similarity=0.357  Sum_probs=218.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      ...|.+.+.||+|+||.||+|....   ..+..||+|.+....   ......++.|+++|+.++|||||++++++..++.
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~---~~~~~vv~K~~~~~~---~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~  139 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGS---DPKEKVVAKFVMLND---ERQAAYARSELHCLAACDHFGIVKHFDDFKSDDK  139 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcC---CCCeEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCE
Confidence            3459999999999999999998653   226788888764432   2334567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +||||||++||+|..++...  ....+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus       140 ~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~  219 (478)
T PTZ00267        140 LLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQY  219 (478)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceec
Confidence            99999999999998877542  2356899999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                    .....+
T Consensus       220 ~~~~~~--------------------------------------------------------------------~~~~~~  231 (478)
T PTZ00267        220 SDSVSL--------------------------------------------------------------------DVASSF  231 (478)
T ss_pred             CCcccc--------------------------------------------------------------------cccccc
Confidence            321100                                                                    001134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      +||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..++.+... +....++.++.++|.+||..|
T Consensus       232 ~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~li~~~L~~d  310 (478)
T PTZ00267        232 CGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYD-PFPCPVSSGMKALLDPLLSKN  310 (478)
T ss_pred             CCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC-CCCccCCHHHHHHHHHHhccC
Confidence            6999999999999999999999999999999999999999988777777776665443 223458899999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |++||+    +.+++.|+|++.
T Consensus       311 P~~Rps----~~~~l~~~~~~~  328 (478)
T PTZ00267        311 PALRPT----TQQLLHTEFLKY  328 (478)
T ss_pred             hhhCcC----HHHHHhCHHHHH
Confidence            999999    999999999865

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=7.8e-45  Score=365.36  Aligned_cols=260  Identities=25%  Similarity=0.343  Sum_probs=209.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC---
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR---  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~---  159 (457)
                      +|++.++||+|+||+||+|.+.    .+++.||+|++.... .......++.+|+++|+.++|+||+++++++...+   
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   75 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDP----RDGKRVALKKMPNVF-QNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDP   75 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEEC----CCCCEEEEEeccccc-cchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccc
Confidence            5788999999999999999876    378899999986431 12233456788999999999999999999998776   


Q ss_pred             --cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                        ..|+||||+ +++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        76 ~~~~~lv~e~~-~~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          76 FEEIYVVTELM-QSDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             cceEEEEeecc-ccCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceee
Confidence              789999999 46787776553  6799999999999999999999999999999999999999999999999999764


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                     .....
T Consensus       153 ~~~~~~---------------------------------------------------------------------~~~~~  163 (372)
T cd07853         153 EEPDES---------------------------------------------------------------------KHMTQ  163 (372)
T ss_pred             cccCcc---------------------------------------------------------------------ccCCC
Confidence            321100                                                                     00012


Q ss_pred             ccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-----------------------
Q 012762          318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-----------------------  373 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-----------------------  373 (457)
                      ..+|..|+|||++.+.. ++.++|||||||++|||++|+.||.+.+....+..+...                       
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  243 (372)
T cd07853         164 EVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRG  243 (372)
T ss_pred             CCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhC
Confidence            35889999999998754 799999999999999999999999887655444433321                       


Q ss_pred             ccCCC-------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          374 ALEFP-------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       374 ~~~~~-------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      ....+       .....++++.+||.+||+.||++||+    +.|+++||||++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~~~~  296 (372)
T cd07853         244 PHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRIS----AADALAHPYLDEGRL  296 (372)
T ss_pred             CCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcC----HHHHhcCHhhCCCcc
Confidence            11111       11235778999999999999999999    999999999998654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=3e-45  Score=331.09  Aligned_cols=264  Identities=25%  Similarity=0.372  Sum_probs=219.2

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      +....++.+.+.+..||.|+.|+||+++.+.    +|...|||.+.+...  ....+++...++++.+. +.|+||+++|
T Consensus        85 ~r~~~dindl~~l~dlGsGtcG~V~k~~~rs----~~~iiAVK~M~rt~N--kee~kRILmDldvv~~s~dcpyIV~c~G  158 (391)
T KOG0983|consen   85 QRYQADINDLENLGDLGSGTCGQVWKMRFRS----TGHIIAVKQMRRTGN--KEENKRILMDLDVVLKSHDCPYIVQCFG  158 (391)
T ss_pred             cccccChHHhhhHHhhcCCCccceEEEEEcc----cceEEEEEeecccCC--HHHHHHHHHhhhHHhhccCCCeeeeeee
Confidence            3455667788999999999999999999884    788999999976532  34456677777776655 5899999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEecc
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                      +|..+..+++.||.| +.-+..++++.+ ++++|..+-++..-++.||.||.+ +||||||+||.|||+++.|++|||||
T Consensus       159 yFi~n~dV~IcMelM-s~C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDF  236 (391)
T KOG0983|consen  159 YFITNTDVFICMELM-STCAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDF  236 (391)
T ss_pred             EEeeCchHHHHHHHH-HHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecc
Confidence            999999999999998 667777777653 679999999999999999999995 58999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++..+-++....                                                                   
T Consensus       237 GIsGrlvdSkAht-------------------------------------------------------------------  249 (391)
T KOG0983|consen  237 GISGRLVDSKAHT-------------------------------------------------------------------  249 (391)
T ss_pred             cccceeecccccc-------------------------------------------------------------------
Confidence            9987665433221                                                                   


Q ss_pred             cccccccCCCCccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHhcccC-CCCCCCCChHH
Q 012762          313 VRSMSFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVARALE-FPKEPSVPGPA  387 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~  387 (457)
                          .-.|.+.|||||.+.-.   .|+.++||||||++++||.||++||.+.. +.+.+-.+++.... ++....+++++
T Consensus       250 ----rsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F  325 (391)
T KOG0983|consen  250 ----RSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDF  325 (391)
T ss_pred             ----cccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHH
Confidence                12499999999999644   58999999999999999999999999854 45666666664432 33344589999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++++..||..|+.+||.    ..+||+|||....
T Consensus       326 ~~fv~~CL~kd~r~RP~----Y~~Ll~h~Fi~~y  355 (391)
T KOG0983|consen  326 QSFVKDCLTKDHRKRPK----YNKLLEHPFIKRY  355 (391)
T ss_pred             HHHHHHHhhcCcccCcc----hHHHhcCcceeec
Confidence            99999999999999999    9999999999763

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-46  Score=368.22  Aligned_cols=249  Identities=27%  Similarity=0.454  Sum_probs=221.1

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ...|++..+...-++-||+|+-|-||+|+++      ++.||||.++.-          -..+++-|++|+|+||+.|.|
T Consensus       116 ~e~WeiPFe~IsELeWlGSGaQGAVF~Grl~------netVAVKKV~el----------kETdIKHLRkLkH~NII~FkG  179 (904)
T KOG4721|consen  116 EELWEIPFEEISELEWLGSGAQGAVFLGRLH------NETVAVKKVREL----------KETDIKHLRKLKHPNIITFKG  179 (904)
T ss_pred             hhhccCCHHHhhhhhhhccCcccceeeeecc------CceehhHHHhhh----------hhhhHHHHHhccCcceeeEee
Confidence            4567888888888899999999999999975      678999987421          223677899999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +|.....+|||||||..|-|...++..  ..++......|..+|+.|+.|||.++|||||||.-||||..+..|||+|||
T Consensus       180 VCtqsPcyCIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFG  257 (904)
T KOG4721|consen  180 VCTQSPCYCIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFG  257 (904)
T ss_pred             eecCCceeEEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEecccc
Confidence            999999999999999999999999875  779999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      -++.+.+..                                                                       
T Consensus       258 TS~e~~~~S-----------------------------------------------------------------------  266 (904)
T KOG4721|consen  258 TSKELSDKS-----------------------------------------------------------------------  266 (904)
T ss_pred             chHhhhhhh-----------------------------------------------------------------------
Confidence            887665331                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ..|.|+||..|||||+++..+.+.|+|||||||||||||||+.||.+-+...++..+-...+.+|.+..+|+.++-||+.
T Consensus       267 TkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kq  346 (904)
T KOG4721|consen  267 TKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQ  346 (904)
T ss_pred             hhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHH
Confidence            23578999999999999999999999999999999999999999988776656555555667788888899999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||+-.|.+||+    +.+||.|
T Consensus       347 cw~sKpRNRPS----Frqil~H  364 (904)
T KOG4721|consen  347 CWNSKPRNRPS----FRQILLH  364 (904)
T ss_pred             HHhcCCCCCcc----HHHHHHH
Confidence            99999999999    9999988

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=8.1e-45  Score=377.11  Aligned_cols=264  Identities=25%  Similarity=0.381  Sum_probs=220.4

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|++.+.||+|+||+||+|++.    .+++.||||++..... .......+..|+.+|..++|+||++++..+...
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~----~~g~~vAvK~i~~~~~-~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~  103 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRV----SDGEPFAVKVVDMEGM-SEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKK  103 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEc----CCCCEEEEEEEecccC-CHHHHHHHHHHHHHHhcCCCCcEEEeecceecc
Confidence            34468999999999999999999876    4788999999976543 233456677899999999999999998877543


Q ss_pred             C--------cEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          159 R--------WSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       159 ~--------~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      +        .+++||||+++|+|.+++...  ....+++..+..++.||+.||.|||+.||+||||||+|||++.++.+|
T Consensus       104 ~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vk  183 (496)
T PTZ00283        104 DPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVK  183 (496)
T ss_pred             cccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEE
Confidence            2        368999999999999888653  235689999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+++........                                                                
T Consensus       184 L~DFGls~~~~~~~~~----------------------------------------------------------------  199 (496)
T PTZ00283        184 LGDFGFSKMYAATVSD----------------------------------------------------------------  199 (496)
T ss_pred             EEecccCeeccccccc----------------------------------------------------------------
Confidence            9999998654321100                                                                


Q ss_pred             cCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                          ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..++..... +....+++++.
T Consensus       200 ----~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  274 (496)
T PTZ00283        200 ----DVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYD-PLPPSISPEMQ  274 (496)
T ss_pred             ----cccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCC-CCCCCCCHHHH
Confidence                0011346999999999999999999999999999999999999999987777666666655433 33456889999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +++.+||..||.+||+    +.++++|||++.
T Consensus       275 ~li~~~L~~dP~~RPs----~~ell~~p~~~~  302 (496)
T PTZ00283        275 EIVTALLSSDPKRRPS----SSKLLNMPICKL  302 (496)
T ss_pred             HHHHHHcccChhhCcC----HHHHHhCHHHHH
Confidence            9999999999999999    999999999875

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-44  Score=343.55  Aligned_cols=260  Identities=25%  Similarity=0.400  Sum_probs=217.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS--RNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +.|.+.+.||+|+||.||+|.+.    .++..||+|++.......  ......+.+|++++++++||||+++++++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~----~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   77 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDV----DTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE   77 (263)
T ss_pred             CcccccceecCCCceEEEEEEEc----CCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC
Confidence            46899999999999999999876    478899999987543221  223456788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++...  ..+++..++.++.|++.||.|||+.||+|+||||+||+++.++.++|+|||+++...
T Consensus        78 ~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~  155 (263)
T cd06625          78 TLSIFMEYMPGGSVKDQLKAY--GALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  155 (263)
T ss_pred             eEEEEEEECCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecc
Confidence            999999999999999888765  568999999999999999999999999999999999999999999999999975432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                   ........
T Consensus       156 ~~~~~-------------------------------------------------------------------~~~~~~~~  168 (263)
T cd06625         156 TICSS-------------------------------------------------------------------GTGMKSVT  168 (263)
T ss_pred             ccccc-------------------------------------------------------------------cccccCCC
Confidence            11000                                                                   00001235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+..|+|||++.+..++.++|||||||++|||++|+.||...........+............++..+.++|.+||..||
T Consensus       169 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  248 (263)
T cd06625         169 GTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENA  248 (263)
T ss_pred             cCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCc
Confidence            88899999999998899999999999999999999999987766555555554444444445688999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f  418 (457)
                      .+||+    +.++++|+||
T Consensus       249 ~~Rpt----~~~ll~~~~~  263 (263)
T cd06625         249 KKRPS----AEELLRHFFV  263 (263)
T ss_pred             ccCCC----HHHHhhCCCC
Confidence            99999    9999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.4e-44  Score=349.08  Aligned_cols=269  Identities=32%  Similarity=0.631  Sum_probs=209.1

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH---cCCCCCceEEEEEEcCCcEEEEE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM---LDHPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~---l~H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      .||+|+||.||+|.+.    .+++.||+|++.+..............|..+++.   .+|+||+.+++++..++..|+||
T Consensus         1 ~lg~G~~g~Vy~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~   76 (279)
T cd05633           1 IIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFIL   76 (279)
T ss_pred             CcccCCCeEEEEEEEC----CCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEE
Confidence            4899999999999876    4788999999976544333333334445544444   47999999999999999999999


Q ss_pred             eecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccc
Q 012762          166 EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA  245 (457)
Q Consensus       166 E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~  245 (457)
                      ||+.+++|..++..+  ..+++..+..++.||+.||.|||+.||+||||||+|||++.++.++|+|||++........  
T Consensus        77 e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~--  152 (279)
T cd05633          77 DLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP--  152 (279)
T ss_pred             ecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc--
Confidence            999999998888764  5699999999999999999999999999999999999999999999999998753321100  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCcc
Q 012762          246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  325 (457)
                                                                                            ....|+..|+
T Consensus       153 ----------------------------------------------------------------------~~~~~~~~y~  162 (279)
T cd05633         153 ----------------------------------------------------------------------HASVGTHGYM  162 (279)
T ss_pred             ----------------------------------------------------------------------cCcCCCcCcc
Confidence                                                                                  0124899999


Q ss_pred             Cchhhc-CCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          326 APEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       326 aPE~l~-~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      |||.+. +..++.++|||||||++|+|++|..||......  ....... .......+..++.++.++|.+||..||++|
T Consensus       163 aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  241 (279)
T cd05633         163 APEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMT-LTVNVELPDSFSPELKSLLEGLLQRDVSKR  241 (279)
T ss_pred             CHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHh-hcCCcCCccccCHHHHHHHHHHhcCCHHHh
Confidence            999986 456899999999999999999999999764321  1221111 112222234588999999999999999999


Q ss_pred             CCC-CcChHHHhcCCCCCCCCchhhh--ccCCCCCCC
Q 012762          403 MGS-KMGATAIKRHQFFNGVNWALLR--CAKPPFIPR  436 (457)
Q Consensus       403 ps~-~~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~  436 (457)
                      ++. ...+.++++||||++.+|....  ...+|.+|.
T Consensus       242 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  278 (279)
T cd05633         242 LGCLGRGAQEVKEHVFFKGIDWQQVYLQKYPPPLIPP  278 (279)
T ss_pred             cCCCCCCHHHHHhCccccCCCHhHHhcCCCCCCCCCC
Confidence            931 1129999999999999997653  334566654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-46  Score=371.94  Aligned_cols=260  Identities=28%  Similarity=0.440  Sum_probs=221.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.|.|+..||.|+||.||+|..+    .++...|.|++...   +......+..|++||..|+||+||++++.|..++.+
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nk----et~~lAAaKvIetk---seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkL  104 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNK----ETKLLAAAKVIETK---SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKL  104 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcc----cchhhhhhhhhccc---chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCce
Confidence            45889999999999999998866    47777888998543   345566778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      +|+.|||.||-...++-.. ++.+++.++.-+|+|+|.||.|||+++|||||||..|||++.+|.++|+|||.+..... 
T Consensus       105 wiliEFC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~-  182 (1187)
T KOG0579|consen  105 WILIEFCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKS-  182 (1187)
T ss_pred             EEEEeecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchh-
Confidence            9999999999987666554 47899999999999999999999999999999999999999999999999998633210 


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                           ...+..+|+||
T Consensus       183 ---------------------------------------------------------------------t~qkRDsFIGT  193 (1187)
T KOG0579|consen  183 ---------------------------------------------------------------------TRQKRDSFIGT  193 (1187)
T ss_pred             ---------------------------------------------------------------------HHhhhccccCC
Confidence                                                                                 12234478999


Q ss_pred             CCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHh
Q 012762          322 HEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       322 ~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L  395 (457)
                      |+|||||+..     ..+|++++||||||++|.||.-+.+|....+....+.++.....+ +-.+..|+..+.|+|.+||
T Consensus       194 PYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL  273 (1187)
T KOG0579|consen  194 PYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCL  273 (1187)
T ss_pred             cccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHH
Confidence            9999999975     457999999999999999999999999888777777666554332 3344568899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      ..||..||+    +.+||+||||.+++-
T Consensus       274 ~Knp~~Rp~----aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  274 VKNPRNRPP----AAQLLKHPFVQNAPS  297 (1187)
T ss_pred             hcCCccCCC----HHHHhhCcccccCCc
Confidence            999999999    999999999997643

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1e-44  Score=362.19  Aligned_cols=256  Identities=25%  Similarity=0.377  Sum_probs=204.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ..++|++.+.||+|+||.||+|.+.    ..++.||+|++..... .......+.+|+.+++.++|+||+++++++... 
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~   89 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK   89 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEec----CCCceEEEEEeCCccc-ChHHHHHHHHHHHHHHHhCCCchhceeeeeeccc
Confidence            4578999999999999999999876    4788999999865322 223445677799999999999999999988643 


Q ss_pred             -----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          159 -----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       159 -----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                           ...|+||||++ ++|...+..    .+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        90 ~~~~~~~~~lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg  164 (355)
T cd07874          90 SLEEFQDVYLVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_pred             cccccceeEEEhhhhc-ccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCc
Confidence                 35799999995 566655543    48899999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.......                                                                      
T Consensus       165 ~~~~~~~~~~----------------------------------------------------------------------  174 (355)
T cd07874         165 LARTAGTSFM----------------------------------------------------------------------  174 (355)
T ss_pred             ccccCCCccc----------------------------------------------------------------------
Confidence            9854321100                                                                      


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc------------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL------------------  375 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~------------------  375 (457)
                       .....||..|+|||++.+..++.++|||||||++|+|++|+.||.+.........++....                  
T Consensus       175 -~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (355)
T cd07874         175 -MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV  253 (355)
T ss_pred             -cCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHH
Confidence             0123689999999999999999999999999999999999999987664433332222100                  


Q ss_pred             ----C-----CC-------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          376 ----E-----FP-------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       376 ----~-----~~-------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                          .     ++             .....+.++++||.+||..||++|||    +.|+|+||||+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps----~~ell~hp~~~~  316 (355)
T cd07874         254 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDEALQHPYINV  316 (355)
T ss_pred             hcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCC----HHHHhcCcchhc
Confidence                0     00             01123457899999999999999999    999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=350.05  Aligned_cols=251  Identities=16%  Similarity=0.172  Sum_probs=210.0

Q ss_pred             ccCCCceeE--EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           79 LTLSDLRFV--HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~--~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      +..+++...  ..||+|++|.||+|.+      +|+.||+|++++.........+.+.+|+++|++++||||+++++++.
T Consensus        15 i~~~~i~~~~~~~i~~g~~~~v~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~   88 (283)
T PHA02988         15 IESDDIDKYTSVLIKENDQNSIYKGIF------NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFII   88 (283)
T ss_pred             cCHHHcCCCCCeEEeeCCceEEEEEEE------CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEE
Confidence            344445444  6799999999999986      57899999997654333333567788999999999999999999987


Q ss_pred             c----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEec
Q 012762          157 C----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       157 ~----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      +    ...+++||||+++|+|.+++...  ..+++.....++.|++.||.|||+ .+++||||||+|||++.++.+||+|
T Consensus        89 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~d  166 (283)
T PHA02988         89 DIVDDLPRLSLILEYCTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIIC  166 (283)
T ss_pred             ecccCCCceEEEEEeCCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcc
Confidence            6    35789999999999999998764  568899999999999999999998 4999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++......                                                                     
T Consensus       167 fg~~~~~~~~~---------------------------------------------------------------------  177 (283)
T PHA02988        167 HGLEKILSSPP---------------------------------------------------------------------  177 (283)
T ss_pred             cchHhhhcccc---------------------------------------------------------------------
Confidence            99975432110                                                                     


Q ss_pred             ccccccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                          ....|+..|+|||++.+  ..++.++|||||||++|||++|..||.+....+.+..++....+.+.+..++..+++
T Consensus       178 ----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~  253 (283)
T PHA02988        178 ----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKC  253 (283)
T ss_pred             ----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHH
Confidence                01258899999999976  578999999999999999999999999887777777776666565555568899999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |+.+||+.||++||+    +.+|++
T Consensus       254 li~~cl~~dp~~Rps----~~ell~  274 (283)
T PHA02988        254 IVEACTSHDSIKRPN----IKEILY  274 (283)
T ss_pred             HHHHHhcCCcccCcC----HHHHHH
Confidence            999999999999999    777764

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-46  Score=338.62  Aligned_cols=254  Identities=29%  Similarity=0.431  Sum_probs=217.0

Q ss_pred             cCCCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc
Q 012762           80 TLSDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC  157 (457)
Q Consensus        80 ~~~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~  157 (457)
                      ..+||.+. ++||-|-.|.|-.|.++.    +++.+|+|++..        ....++|+++--+. .|||||.++++|.+
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~----T~ekfALKvL~D--------s~KARrEVeLHw~~s~h~~iV~IidVyeN  126 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKR----TQEKFALKVLLD--------SPKARREVELHWMASGHPHIVSIIDVYEN  126 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEecc----chhhhHHHHHhc--------CHHHHhHhhhhhhhcCCCceEEeehhhhh
Confidence            34678774 689999999999999884    899999999842        23456788875554 79999999998854


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEe
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLT  230 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~  230 (457)
                          ...+.+|||.++||.|...++.+....|+|.++..|+.||+.|+.|||+.+|.||||||+|+|...   +..+||+
T Consensus       127 s~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  127 SYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             hccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEec
Confidence                356789999999999999999988888999999999999999999999999999999999999974   4579999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||||+.-...                                                                     
T Consensus       207 DfGFAK~t~~~---------------------------------------------------------------------  217 (400)
T KOG0604|consen  207 DFGFAKETQEP---------------------------------------------------------------------  217 (400)
T ss_pred             ccccccccCCC---------------------------------------------------------------------
Confidence            99999754321                                                                     


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCC--CCCCC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPK--EPSVP  384 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~--~~~~~  384 (457)
                        ...++-+-|+.|.|||++....|+...|+||+||++|-|++|.+||+....    ..+-.+|..+.+.||.  +..++
T Consensus       218 --~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VS  295 (400)
T KOG0604|consen  218 --GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVS  295 (400)
T ss_pred             --ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHH
Confidence              112234689999999999999999999999999999999999999987643    3456777788888875  45788


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++.+|+|+++|..+|++|.+    ++++++|||..+
T Consensus       296 e~aKdlIR~LLkt~PteRlT----I~~~m~hpwi~~  327 (400)
T KOG0604|consen  296 EAAKDLIRKLLKTEPTERLT----IEEVMDHPWINQ  327 (400)
T ss_pred             HHHHHHHHHHhcCCchhhee----HHHhhcCchhcc
Confidence            99999999999999999999    999999999986

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2.3e-44  Score=343.71  Aligned_cols=258  Identities=40%  Similarity=0.712  Sum_probs=219.4

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||.|+||.||+|.+.    .++..||+|++.+...........+..|+++++.++|+||+++++++..+...|+||||++
T Consensus         1 lg~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   76 (262)
T cd05572           1 LGVGGFGRVELVKVK----SKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCL   76 (262)
T ss_pred             CCCCCceEEEEEEEC----CCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCC
Confidence            699999999999986    3688999999987655544556778899999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      +++|.+++...  ..+++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++.......       
T Consensus        77 ~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~-------  147 (262)
T cd05572          77 GGELWTILRDR--GLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-------  147 (262)
T ss_pred             CCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc-------
Confidence            99999988765  558999999999999999999999999999999999999999999999999976543211       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                      ......|+..|++||.
T Consensus       148 ----------------------------------------------------------------~~~~~~~~~~~~~PE~  163 (262)
T cd05572         148 ----------------------------------------------------------------KTWTFCGTPEYVAPEI  163 (262)
T ss_pred             ----------------------------------------------------------------ccccccCCcCccChhH
Confidence                                                                            0012358889999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC--hHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCC-C
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-K  406 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~-~  406 (457)
                      +.+..++.++|+||||+++|+|++|..||....  .......+.........+..++.++.++|.+||..||++||++ +
T Consensus       164 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~  243 (262)
T cd05572         164 ILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLK  243 (262)
T ss_pred             hcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcc
Confidence            988889999999999999999999999998766  4455555553333333334468899999999999999999995 3


Q ss_pred             cChHHHhcCCCCCCCCch
Q 012762          407 MGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~  424 (457)
                      ..+.|+++||||++++|.
T Consensus       244 ~~~~~l~~~~~~~~~~~~  261 (262)
T cd05572         244 GGIKDIKKHKWFNGFDWE  261 (262)
T ss_pred             cCHHHHhcChhhhCCCCC
Confidence            468999999999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.8e-44  Score=364.89  Aligned_cols=254  Identities=24%  Similarity=0.312  Sum_probs=201.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ....|.+.+.||+|+||.||+|.+.    ..++.||||....         ..+.+|+++|++|+|+|||++++++..++
T Consensus       167 ~~~gy~i~~~Lg~G~~G~Vy~a~~~----~~~~~vavK~~~~---------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~  233 (461)
T PHA03211        167 AGLGFAIHRALTPGSEGCVFESSHP----DYPQRVVVKAGWY---------ASSVHEARLLRRLSHPAVLALLDVRVVGG  233 (461)
T ss_pred             ccCCeEEEEEEccCCCeEEEEEEEC----CCCCEEEEecccc---------cCHHHHHHHHHHCCCCCCCcEEEEEEECC
Confidence            3457999999999999999999876    3678999996432         23456999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|||||++ .++|..++... ...+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+++...
T Consensus       234 ~~~lv~e~~-~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~  311 (461)
T PHA03211        234 LTCLVLPKY-RSDLYTYLGAR-LRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFAR  311 (461)
T ss_pred             EEEEEEEcc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecc
Confidence            999999999 57887777653 2469999999999999999999999999999999999999999999999999986442


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                    .....+.
T Consensus       312 ~~~~~--------------------------------------------------------------------~~~~~~~  323 (461)
T PHA03211        312 GSWST--------------------------------------------------------------------PFHYGIA  323 (461)
T ss_pred             ccccc--------------------------------------------------------------------ccccccC
Confidence            11000                                                                    0001246


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh-------HHHHHHHHhc-ccC---CC----------
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------ELTLANVVAR-ALE---FP----------  378 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~-------~~~~~~~~~~-~~~---~~----------  378 (457)
                      ||..|+|||++.+..++.++|||||||+||||++|..|+.....       ...+.+++.. ...   ++          
T Consensus       324 GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~  403 (461)
T PHA03211        324 GTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQ  403 (461)
T ss_pred             CCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHH
Confidence            99999999999999999999999999999999998765533211       1122222221 110   00          


Q ss_pred             -------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 -------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 -------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                         ....++.++.+||.+||+.||.+||+    +.|||+||||++
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPs----a~elL~hp~f~~  460 (461)
T PHA03211        404 YRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPS----AAELLRLPLFQS  460 (461)
T ss_pred             HHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcC----HHHHhhCcccCC
Confidence                               00124557899999999999999999    999999999975

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.4e-44  Score=357.09  Aligned_cols=265  Identities=21%  Similarity=0.346  Sum_probs=208.0

Q ss_pred             eEEEeccc--CcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           86 FVHRLGSG--DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        86 ~~~~LG~G--~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      ++++||+|  +||+||++.++    .+|+.||+|++..... .......+..|+++++.++||||+++++++..++..|+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l   76 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYK----PTGEYVTVRRINLEAC-TNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV   76 (327)
T ss_pred             hhhhccccccceEEEEEEeec----ccCcEEEEEEechhhc-cHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEE
Confidence            56789999  78899999887    4899999999976532 22345567789999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+++++|.+++..+....+++..++.++.||+.||.|||++||+||||||+|||++.++.++++||+..........
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~  156 (327)
T cd08227          77 VTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQ  156 (327)
T ss_pred             EEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccc
Confidence            99999999999998765556699999999999999999999999999999999999999999999999986532211000


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                      ...                                                  ...+             ......++..
T Consensus       157 ~~~--------------------------------------------------~~~~-------------~~~~~~~~~~  173 (327)
T cd08227         157 RLR--------------------------------------------------VVHD-------------FPKYSVKVLP  173 (327)
T ss_pred             ccc--------------------------------------------------cccc-------------ccccccceec
Confidence            000                                                  0000             0001247788


Q ss_pred             ccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC------------------------
Q 012762          324 YLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF------------------------  377 (457)
Q Consensus       324 y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~------------------------  377 (457)
                      |+|||++.+  ..++.++|||||||++|||++|..||...................                        
T Consensus       174 y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (327)
T cd08227         174 WLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSG  253 (327)
T ss_pred             ccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCC
Confidence            999999976  358999999999999999999999998765444333332221110                        


Q ss_pred             --------------------CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          378 --------------------PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       378 --------------------~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                                          +....+++.+.+||.+||+.||++||+    ++++++||||+.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~ell~~p~f~~~~  314 (327)
T cd08227         254 LGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPS----ASTLLNHSFFKQIK  314 (327)
T ss_pred             CCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCC----HHHHhcChhhhhcc
Confidence                                011134568999999999999999999    99999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=3.9e-44  Score=349.67  Aligned_cols=261  Identities=24%  Similarity=0.374  Sum_probs=211.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|++.++||.|+||.||+|.++    .+++.||+|.+.....  ......+.+|+++++.++|+||+++++++...+
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~   77 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSK----LTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEK   77 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEc----CCCcEEEEEEEecccc--cCchhHHHHHHHHHHhcCCCCcceEEEEEecCC
Confidence            4678999999999999999999876    3778999999865422  223345667999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+. ++|..++... ...+++..++.++.||+.||.|||+.||+|+||||+|||++.++.++|+|||++....
T Consensus        78 ~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  155 (301)
T cd07873          78 SLTLVFEYLD-KDLKQYLDDC-GNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKS  155 (301)
T ss_pred             eEEEEEeccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccC
Confidence            9999999995 6888777654 3568999999999999999999999999999999999999999999999999975332


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       156 ~~~~~----------------------------------------------------------------------~~~~~  165 (301)
T cd07873         156 IPTKT----------------------------------------------------------------------YSNEV  165 (301)
T ss_pred             CCCCc----------------------------------------------------------------------ccccc
Confidence            11000                                                                      00124


Q ss_pred             CCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-------------------cCCCC
Q 012762          320 GTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-------------------LEFPK  379 (457)
Q Consensus       320 gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-------------------~~~~~  379 (457)
                      +++.|+|||++.+. .++.++|||||||++|||++|++||.+.+..+....+....                   ...+.
T Consensus       166 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (301)
T cd07873         166 VTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPK  245 (301)
T ss_pred             eeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCc
Confidence            78899999998764 47889999999999999999999998876544433332210                   01111


Q ss_pred             ---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          380 ---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       380 ---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                               ...+++++++||.+||..||.+|||    ++++++||||+.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t----~~eil~h~~f~~~~  293 (301)
T cd07873         246 YRADCLHNHAPRLDSDGAELLSKLLQFEGRKRIS----AEEAMKHPYFHCLG  293 (301)
T ss_pred             cccccHHhhcCCCCHHHHHHHHHHhcCCcccCcC----HHHHhcCccccccc
Confidence                     1246788999999999999999999    99999999998765

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=6e-44  Score=339.08  Aligned_cols=256  Identities=23%  Similarity=0.384  Sum_probs=218.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.+.+.||+|+||.||+|.++    .++..|++|.+...... ......+..|+++++.++|+||+++++++...+..|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   75 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRK----ADKRVYAMKQIDLSKMN-RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLN   75 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEc----CCCcEEEEEEeehhhCC-HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEE
Confidence            5889999999999999999987    47889999998765433 334566788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|.+++.......+++..+..++.||+.||.|||+.||+|+||||+||+++.++.++|+|||+++......
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~  155 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT  155 (256)
T ss_pred             EEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCcc
Confidence            99999999999999887655779999999999999999999999999999999999999999999999999876443211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                      .....|+.
T Consensus       156 ~~----------------------------------------------------------------------~~~~~~~~  165 (256)
T cd08529         156 NF----------------------------------------------------------------------ANTIVGTP  165 (256)
T ss_pred             ch----------------------------------------------------------------------hhccccCc
Confidence            00                                                                      01235888


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||++.+..++.++|||||||++|+|++|+.||...........+....... ....++.++.+++.+||+.+|++|
T Consensus       166 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~~R  244 (256)
T cd08529         166 YYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPP-VSQMYSQQLAQLIDQCLTKDYRQR  244 (256)
T ss_pred             cccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCC-CccccCHHHHHHHHHHccCCcccC
Confidence            9999999999889999999999999999999999998877666666655543322 222578899999999999999999


Q ss_pred             CCCCcChHHHhcCCCC
Q 012762          403 MGSKMGATAIKRHQFF  418 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f  418 (457)
                      |+    +.++++|||+
T Consensus       245 p~----~~~ll~~~~~  256 (256)
T cd08529         245 PD----TFQLLRNPSL  256 (256)
T ss_pred             cC----HHHHhhCCCC
Confidence            99    9999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-44  Score=360.32  Aligned_cols=255  Identities=27%  Similarity=0.383  Sum_probs=206.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++++.||.|+||+||+|.+.    .+++.||||++.+... .......+.+|+++|+.++|+||+++++++...  
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDT----RLRQKVAVKKLSRPFQ-SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATS   88 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEEC----CCCCEEEEEEeCchhh-hhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccc
Confidence            368999999999999999999876    4788999999875422 222345567799999999999999999987543  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          ...|++||++ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        89 ~~~~~~~~~~~~~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~  164 (343)
T cd07878          89 IENFNEVYLVTNLM-GADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGL  164 (343)
T ss_pred             ccccCcEEEEeecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcc
Confidence                3579999998 8999887754   5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.....                                                                         
T Consensus       165 ~~~~~~~-------------------------------------------------------------------------  171 (343)
T cd07878         165 ARQADDE-------------------------------------------------------------------------  171 (343)
T ss_pred             ceecCCC-------------------------------------------------------------------------
Confidence            7543211                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----------------  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----------------  376 (457)
                      ....+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+......+..+......                 
T Consensus       172 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (343)
T cd07878         172 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKY  251 (343)
T ss_pred             cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHH
Confidence            012368999999999987 46899999999999999999999999876554444333221100                 


Q ss_pred             ------CCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          377 ------FPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       377 ------~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                            .+.      ....++.+.+||.+||..||.+||+    +.|+++||||...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s----~~ell~hp~~~~~  304 (343)
T cd07878         252 IQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRIS----ASEALAHPYFSQY  304 (343)
T ss_pred             hhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCcchhcc
Confidence                  000      0124566899999999999999999    9999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=3.7e-44  Score=348.16  Aligned_cols=265  Identities=28%  Similarity=0.460  Sum_probs=218.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..+.|+++++||.|+||.||+|++.    .++..||+|++....   ......+..|+++++.++|+||+++++++..++
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~----~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   82 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNK----ETGALAAAKVIETKS---EEELEDYMVEIEILATCNHPYIVKLLGAFYWDG   82 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEEC----CCCceEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCC
Confidence            3467999999999999999999876    478899999986542   234566778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|..++... ...+++..+..++.||+.+|.|||+.||+||||||+||+++.++.++|+|||++....
T Consensus        83 ~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  161 (292)
T cd06644          83 KLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNV  161 (292)
T ss_pred             eEEEEEecCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceecc
Confidence            999999999999998776543 2568999999999999999999999999999999999999999999999999864322


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       162 ~~~~----------------------------------------------------------------------~~~~~~  171 (292)
T cd06644         162 KTLQ----------------------------------------------------------------------RRDSFI  171 (292)
T ss_pred             cccc----------------------------------------------------------------------ccceec
Confidence            1100                                                                      001235


Q ss_pred             CCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHH
Q 012762          320 GTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       320 gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~  393 (457)
                      |+..|+|||++.     ...++.++|||||||++|||++|..||..........++..... .......++.++.++|.+
T Consensus       172 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  251 (292)
T cd06644         172 GTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKT  251 (292)
T ss_pred             CCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHH
Confidence            888999999985     34468899999999999999999999987665555544443322 222334577899999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      ||..||++||+    +.++++||||..++|+..
T Consensus       252 ~l~~~p~~Rp~----~~~il~~~~~~~~~~~~~  280 (292)
T cd06644         252 ALDKHPETRPS----AAQLLEHPFVSSVTSNRP  280 (292)
T ss_pred             HhcCCcccCcC----HHHHhcCccccccccchh
Confidence            99999999999    999999999999999754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6e-45  Score=362.29  Aligned_cols=260  Identities=27%  Similarity=0.470  Sum_probs=234.5

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .......|.++..||+|.|++|.+|++.    .++..||||++++.........+ +.+|++||+.|+|||||+++.+..
T Consensus        51 ~~~~vg~y~i~~tig~g~f~~V~La~~~----~t~~~VaiK~idkt~ln~~~~~k-~~rev~imk~l~HPnIvkl~~v~~  125 (596)
T KOG0586|consen   51 DSNSVGLYVIIKTIGKGNFAKVKLARHI----LTGTEVAIKIIDKTQLNPSKRQK-LGREVDIMKSLNHPNIVKLFSVIE  125 (596)
T ss_pred             ccccccceeeeeeeccceeEEEEeeEec----CCCceEEEEEehhcccChHHHHH-HHHHHHHHHhcCCcceeeeeeeee
Confidence            3445678999999999999999999987    47899999999887654443334 778999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ....+|+||||+.+|.+++++..+  +++.+..++.++.|++.|++|||+++|||||||++||||+.+.++||+|||++.
T Consensus       126 t~~~lylV~eya~~ge~~~yl~~~--gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586|consen  126 TEATLYLVMEYASGGELFDYLVKH--GRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             ecceeEEEEEeccCchhHHHHHhc--ccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccce
Confidence            999999999999999999999886  788889999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+...                                                                       ....
T Consensus       204 ~~~~~-----------------------------------------------------------------------~~lq  212 (596)
T KOG0586|consen  204 FFDYG-----------------------------------------------------------------------LMLQ  212 (596)
T ss_pred             eeccc-----------------------------------------------------------------------cccc
Confidence            66421                                                                       1123


Q ss_pred             cccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      +++|++.|.|||++.|..| ++.+|+||+|+++|-|+.|..||++..-.+.-.+.+.+.++.|..  ++.+..++|+++|
T Consensus       213 t~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~--ms~dce~lLrk~l  290 (596)
T KOG0586|consen  213 TFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFY--MSCDCEDLLRKFL  290 (596)
T ss_pred             ccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccce--eechhHHHHHHhh
Confidence            6789999999999999987 789999999999999999999999999888888999999999887  7888999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ..+|.+|++    ++++.+|.|...
T Consensus       291 vl~Pskr~~----~dqim~~~W~n~  311 (596)
T KOG0586|consen  291 VLNPSKRGP----CDQIMKDRWRND  311 (596)
T ss_pred             ccCccccCC----HHHhhhhcccch
Confidence            999999999    999999999874

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.6e-44  Score=345.05  Aligned_cols=255  Identities=26%  Similarity=0.407  Sum_probs=210.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP--  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~--  158 (457)
                      +.|++.+.||+|+||.||+|.++    .+++.||+|++....    .....+..|+++++++ +|+||+++++++...  
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~----~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~   77 (272)
T cd06637           6 GIFELVELVGNGTYGQVYKGRHV----KTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP   77 (272)
T ss_pred             hhhhHHHheeecCCeEEEEEEEc----CCCcEEEEEEEEcCC----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCC
Confidence            46888999999999999999886    478899999986532    2345677799999998 799999999998653  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          ..+|+||||+.+++|..++.......+++..+..++.|++.||.|||+++|+|+||||+||+++.++.++|+|||+
T Consensus        78 ~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~  157 (272)
T cd06637          78 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGV  157 (272)
T ss_pred             CCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCC
Confidence                4589999999999999998876556799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                      .
T Consensus       158 ~~~~~~~~~----------------------------------------------------------------------~  167 (272)
T cd06637         158 SAQLDRTVG----------------------------------------------------------------------R  167 (272)
T ss_pred             ceecccccc----------------------------------------------------------------------c
Confidence            754321100                                                                      0


Q ss_pred             cccccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          315 SMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                      .....|+..|+|||++.     +..++.++|||||||++|||++|..||........................++.++.+
T Consensus       168 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (272)
T cd06637         168 RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQS  247 (272)
T ss_pred             CCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHHHHH
Confidence            11346899999999986     3357889999999999999999999998765544444333333333333457889999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      |+.+||..||.+||+    +.++++||||
T Consensus       248 li~~~l~~~p~~Rpt----~~~il~~~~~  272 (272)
T cd06637         248 FIESCLVKNHSQRPT----TEQLMKHPFI  272 (272)
T ss_pred             HHHHHcCCChhhCCC----HHHHhhCCCC
Confidence            999999999999999    9999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-46  Score=364.59  Aligned_cols=254  Identities=24%  Similarity=0.308  Sum_probs=223.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      -|.-++.||.|+||-||.|++.    .+.+.||||.+....-.+..+...+..|+..|+.|.|||++.+.|+|..+...|
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~----~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaW  102 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAW  102 (948)
T ss_pred             HHHHHHHhcCCccceeEEeecc----CccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHH
Confidence            3777899999999999999987    488999999997665555556677888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      |||||| -|+-.+++..++ +++.+-++..|+.+.+.||.|||+.+.||||||..|||++..|.|||+|||.+-...   
T Consensus       103 LVMEYC-lGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~---  177 (948)
T KOG0577|consen  103 LVMEYC-LGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMA---  177 (948)
T ss_pred             HHHHHH-hccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcC---
Confidence            999999 888888888764 789999999999999999999999999999999999999999999999999864332   


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                                                                                             ...+|+|||
T Consensus       178 -----------------------------------------------------------------------PAnsFvGTP  186 (948)
T KOG0577|consen  178 -----------------------------------------------------------------------PANSFVGTP  186 (948)
T ss_pred             -----------------------------------------------------------------------chhcccCCc
Confidence                                                                                   123689999


Q ss_pred             CccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          323 EYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       323 ~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      .|||||++..   ..|+-++||||||+++.||...++|+..++....+..|....-+.-..+.|++.+++||..||+.-|
T Consensus       187 ywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKip  266 (948)
T KOG0577|consen  187 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIP  266 (948)
T ss_pred             cccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCc
Confidence            9999999964   4589999999999999999999999998887777776666655544566799999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+|||    .+++|+|+|..-
T Consensus       267 qeRpt----se~ll~H~fv~R  283 (948)
T KOG0577|consen  267 QERPT----SEELLKHRFVLR  283 (948)
T ss_pred             ccCCc----HHHHhhcchhcc
Confidence            99999    999999999854

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-45  Score=377.39  Aligned_cols=264  Identities=22%  Similarity=0.355  Sum_probs=227.3

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLY  152 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~  152 (457)
                      .....+...+.++.++||+|+||+||+|+..... ......||||.++..  ........|++|+++|..|+|||||+|+
T Consensus       478 ~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~--a~~~~~~dF~REaeLla~l~H~nIVrLl  555 (774)
T KOG1026|consen  478 LKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK--AENQARQDFRREAELLAELQHPNIVRLL  555 (774)
T ss_pred             cceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccc--ccHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence            3445677789999999999999999999875433 245578999999765  3344678899999999999999999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeE
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQP------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL  220 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIl  220 (457)
                      |+|.+++.+|||+|||..|+|.+++....            ...++..+.+.|+.||+.|++||-++.+|||||...|+|
T Consensus       556 GVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCL  635 (774)
T KOG1026|consen  556 GVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCL  635 (774)
T ss_pred             EEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhce
Confidence            99999999999999999999999987632            123888999999999999999999999999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                      |.++..|||+|||+++..-........                                                     
T Consensus       636 Vge~l~VKIsDfGLsRdiYssDYYk~~-----------------------------------------------------  662 (774)
T KOG1026|consen  636 VGENLVVKISDFGLSRDIYSSDYYKVR-----------------------------------------------------  662 (774)
T ss_pred             eccceEEEecccccchhhhhhhhhccc-----------------------------------------------------
Confidence            999999999999998765422221100                                                     


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCC
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                    . .-.-..+|||||.|....|+.+||||||||+|||+++ |..||.+..+++.++.+.++.. ++.
T Consensus       663 --------------~-~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~l-L~~  726 (774)
T KOG1026|consen  663 --------------G-NTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQL-LSC  726 (774)
T ss_pred             --------------C-CceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCc-ccC
Confidence                          0 0023678999999999999999999999999999996 9999999999999999999988 888


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHH
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~l  412 (457)
                      +..+|.++.+||..||+.+|++||+    +.||
T Consensus       727 Pe~CP~~vY~LM~~CW~~~P~~RPs----F~eI  755 (774)
T KOG1026|consen  727 PENCPTEVYSLMLECWNENPKRRPS----FKEI  755 (774)
T ss_pred             CCCCCHHHHHHHHHHhhcCcccCCC----HHHH
Confidence            8889999999999999999999999    6665

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=1.1e-44  Score=344.68  Aligned_cols=254  Identities=33%  Similarity=0.600  Sum_probs=209.3

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |++.+.||+|+||+||+|.+.    .+++.||+|++......... .....+|+.+++.++|+||+++++++......|+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~----~~~~~~~~K~~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~   75 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNK----KNGQKVAVKIIDKSEIEEEE-REENIREIKILRRLRHPNIVQILDVFQDDNYLYI   75 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEET----TTTEEEEEEEEESTTHHHHH-HHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEEC----CCCeEEEEEEeccccccccc-cchhhhhhhccccccccccccccccccccccccc
Confidence            789999999999999999987    47889999999887543332 2233459999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+++++|..++...  ..+++..+..++.||+.||.+||+.||+|+||||+||+++.++.++|+|||++....... 
T Consensus        76 v~~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~-  152 (260)
T PF00069_consen   76 VMEYCPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENN-  152 (260)
T ss_dssp             EEEEETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTT-
T ss_pred             ccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            99999998999998843  679999999999999999999999999999999999999999999999999975431000 


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                           .......++..
T Consensus       153 ---------------------------------------------------------------------~~~~~~~~~~~  163 (260)
T PF00069_consen  153 ---------------------------------------------------------------------ENFNPFVGTPE  163 (260)
T ss_dssp             ---------------------------------------------------------------------SEBSSSSSSGG
T ss_pred             ---------------------------------------------------------------------ccccccccccc
Confidence                                                                                 01112358999


Q ss_pred             ccCchhhc-CCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhhh
Q 012762          324 YLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       324 y~aPE~l~-~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~~  397 (457)
                      |+|||++. +..++.++||||||+++|+|++|..||....   ....+.............  ...+..+.++|.+||+.
T Consensus       164 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  243 (260)
T PF00069_consen  164 YMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSK  243 (260)
T ss_dssp             GSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccC
Confidence            99999998 7788999999999999999999999999873   223333333322222111  12237899999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ||++||+    +.++++||||
T Consensus       244 ~p~~R~~----~~~l~~~~~~  260 (260)
T PF00069_consen  244 DPEQRPS----AEELLKHPWF  260 (260)
T ss_dssp             SGGGSTT----HHHHHTSGGG
T ss_pred             ChhHCcC----HHHHhcCCCC
Confidence            9999999    9999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-44  Score=362.08  Aligned_cols=265  Identities=23%  Similarity=0.353  Sum_probs=228.8

Q ss_pred             CCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceE
Q 012762           72 NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTL  151 (457)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l  151 (457)
                      .....|.+..++..+.++||+|+||.||+|..+..+......||+|..+...........++..|+++|++++|||||++
T Consensus       147 I~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~  226 (474)
T KOG0194|consen  147 IPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRF  226 (474)
T ss_pred             ccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            34556788888888999999999999999999864432223389999876444566778889999999999999999999


Q ss_pred             EEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      ||+......+|||||+|.||+|.++++..+. .++..+...++.+.+.||+|||++++|||||...|+|++.++.+||+|
T Consensus       227 yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISD  305 (474)
T KOG0194|consen  227 YGVAVLEEPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISD  305 (474)
T ss_pred             EEEEcCCCccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCc
Confidence            9999999999999999999999999988643 699999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++....-.....                                                                 
T Consensus       306 FGLs~~~~~~~~~~~-----------------------------------------------------------------  320 (474)
T KOG0194|consen  306 FGLSRAGSQYVMKKF-----------------------------------------------------------------  320 (474)
T ss_pred             cccccCCcceeeccc-----------------------------------------------------------------
Confidence            999765431110000                                                                 


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                           ..--...|+|||.+....|+.++|||||||++||+++ |..||.+....+...+++...++.+.+...|..+..+
T Consensus       321 -----~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~  395 (474)
T KOG0194|consen  321 -----LKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAKV  395 (474)
T ss_pred             -----cccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHHH
Confidence                 0013568999999999999999999999999999998 8999999999999999988899998888899999999


Q ss_pred             HHHHhhhCCCCCCCCCc
Q 012762          391 IAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~  407 (457)
                      +.+||..||++||+|..
T Consensus       396 ~~~c~~~~p~~R~tm~~  412 (474)
T KOG0194|consen  396 MKQCWKKDPEDRPTMST  412 (474)
T ss_pred             HHHhccCChhhccCHHH
Confidence            99999999999999544

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.1e-43  Score=344.39  Aligned_cols=272  Identities=17%  Similarity=0.256  Sum_probs=217.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      |.+..++|++.++||+|+||.||+|.++.. ....+..||+|.+.....  ......+.+|+.+++.++|+||+++++++
T Consensus         1 ~~~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~   78 (288)
T cd05061           1 WEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS--LRERIEFLNEASVMKGFTCHHVVRLLGVV   78 (288)
T ss_pred             CcccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence            456778999999999999999999987632 223456899999864421  22334567799999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP--------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~--------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~v  227 (457)
                      ...+..|+||||+.+|+|.+++....        ...+....+..++.||+.||.|||+++|+||||||+|||++.++.+
T Consensus        79 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~  158 (288)
T cd05061          79 SKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTV  158 (288)
T ss_pred             cCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcE
Confidence            99999999999999999999987532        1334667888999999999999999999999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      +|+|||+++.........                                                              
T Consensus       159 ~L~Dfg~~~~~~~~~~~~--------------------------------------------------------------  176 (288)
T cd05061         159 KIGDFGMTRDIYETDYYR--------------------------------------------------------------  176 (288)
T ss_pred             EECcCCcccccccccccc--------------------------------------------------------------
Confidence            999999976432111000                                                              


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                            ......++..|+|||.+.+..++.++|||||||++|||++ |..||.+....+....+..... .+....++..
T Consensus       177 ------~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  249 (288)
T cd05061         177 ------KGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGY-LDQPDNCPER  249 (288)
T ss_pred             ------ccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-CCCCCCCCHH
Confidence                  0001235778999999998889999999999999999998 8999988776666655554322 2223346789


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhc------CCCCCCCCc
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKR------HQFFNGVNW  423 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~------hp~f~~~~~  423 (457)
                      +++++.+||+.||++||+    +.++++      ||||++++|
T Consensus       250 ~~~li~~~l~~~p~~Rps----~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         250 VTDLMRMCWQFNPKMRPT----FLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             HHHHHHHHcCCChhHCcC----HHHHHHHHHhhcCCCCCCCCC
Confidence            999999999999999999    666654      999999998

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=7.7e-44  Score=348.89  Aligned_cols=254  Identities=26%  Similarity=0.409  Sum_probs=208.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||+|+||.||+|.+.    .++..||+|.+....  .......+.+|++++++++||||+++++++..++.+
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~----~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   74 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHR----PSGLIMARKLIHLEI--KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEI   74 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEc----CCCeEEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEE
Confidence            47999999999999999999876    477889999986431  223445677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |+||||+++++|..++...  ..+++..+..++.|++.||.|||+ .+++|+||||+|||++.++.++|+|||++.....
T Consensus        75 ~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (308)
T cd06615          75 SICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  152 (308)
T ss_pred             EEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccc
Confidence            9999999999999998765  678999999999999999999997 5999999999999999999999999998643321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                        ...+.|
T Consensus       153 ~~------------------------------------------------------------------------~~~~~~  160 (308)
T cd06615         153 SM------------------------------------------------------------------------ANSFVG  160 (308)
T ss_pred             cc------------------------------------------------------------------------cccCCC
Confidence            00                                                                        012468


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------------
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------------  376 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------------  376 (457)
                      +..|+|||++.+..++.++|||||||++|+|++|+.||......... ........                        
T Consensus       161 ~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (308)
T cd06615         161 TRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELE-AMFGRPVSEGEAKESHRPVSGHPPDSPRPMAI  239 (308)
T ss_pred             CcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHH-HhhcCccccccccCCcccccCCCCCccchhhH
Confidence            99999999998888999999999999999999999999764432221 11111000                        


Q ss_pred             -----------CCC--CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          377 -----------FPK--EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       377 -----------~~~--~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                 .+.  ...++.++++++.+||..||++||+    +.+|++||||..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~~~~~~  292 (308)
T cd06615         240 FELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERAD----LKELTKHPFIKR  292 (308)
T ss_pred             HHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcC----HHHHhcChhhhh
Confidence                       000  1125678999999999999999999    999999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=7.7e-44  Score=343.75  Aligned_cols=253  Identities=30%  Similarity=0.449  Sum_probs=207.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|.+.    .++..||+|++....  .......+.+|+++|++++||||+++++++...+..
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~----~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   74 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHL----LTRRILAVKVIPLDI--TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRI   74 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEc----CCCcEEEEEEEecCC--ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEE
Confidence            47899999999999999999876    478899999986542  223445678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ++||||+++++|..+      ..+++..+..++.|++.||.|||+.||+|+||||+|||++.++.++|+|||++......
T Consensus        75 ~lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~  148 (279)
T cd06619          75 SICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS  148 (279)
T ss_pred             EEEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc
Confidence            999999999999643      34788899999999999999999999999999999999999999999999997543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .                                                                        ....+||
T Consensus       149 ~------------------------------------------------------------------------~~~~~~~  156 (279)
T cd06619         149 I------------------------------------------------------------------------AKTYVGT  156 (279)
T ss_pred             c------------------------------------------------------------------------ccCCCCC
Confidence            0                                                                        0123689


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-------HHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-------LTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ..|+|||++.+..++.++|||||||++|+|++|..||......       .....+.............+.++.+++.+|
T Consensus       157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  236 (279)
T cd06619         157 NAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQC  236 (279)
T ss_pred             hhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHH
Confidence            9999999999988999999999999999999999999653211       111222111111111234678899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      |..||++||+    ++++++||||...+
T Consensus       237 l~~~P~~Rp~----~~eil~~~~~~~~~  260 (279)
T cd06619         237 MRKQPKERPA----PENLMDHPFIVQYN  260 (279)
T ss_pred             hhCChhhCCC----HHHHhcCccccccc
Confidence            9999999999    99999999998654

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=3.1e-44  Score=361.04  Aligned_cols=266  Identities=21%  Similarity=0.293  Sum_probs=214.6

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLY  152 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~  152 (457)
                      ..|.+..++|++.+.||+|+||.||+|.+... ...++..||+|+++....  ......+.+|+++|+.+ +|+||++++
T Consensus        31 ~~~~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~il~~l~~h~nIv~~~  108 (374)
T cd05106          31 EKWEFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH--TDEREALMSELKILSHLGQHKNIVNLL  108 (374)
T ss_pred             ccccccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC--HHHHHHHHHHHHHHHhhccCCceeeEe
Confidence            34566778899999999999999999987542 223556899999975422  22345677899999999 899999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCC---------------------------------------------------
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQP---------------------------------------------------  181 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~---------------------------------------------------  181 (457)
                      +++...+..|+|||||.+|+|.+++....                                                   
T Consensus       109 ~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (374)
T cd05106         109 GACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVS  188 (374)
T ss_pred             eEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcc
Confidence            99999999999999999999998875421                                                   


Q ss_pred             -----------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcc
Q 012762          182 -----------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       182 -----------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~  244 (457)
                                       ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++........
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~  268 (374)
T cd05106         189 SSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNY  268 (374)
T ss_pred             ccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcce
Confidence                             134788899999999999999999999999999999999999999999999997543211000


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                      .                                                                    ......++..|
T Consensus       269 ~--------------------------------------------------------------------~~~~~~~~~~y  280 (374)
T cd05106         269 V--------------------------------------------------------------------VKGNARLPVKW  280 (374)
T ss_pred             e--------------------------------------------------------------------eccCCCCccce
Confidence            0                                                                    00012356789


Q ss_pred             cCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCC
Q 012762          325 LAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRM  403 (457)
Q Consensus       325 ~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rp  403 (457)
                      ||||++.+..++.++|||||||++|||++ |..||...........++...........++.++.+++.+||+.||++||
T Consensus       281 ~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RP  360 (374)
T cd05106         281 MAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERP  360 (374)
T ss_pred             eCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCc
Confidence            99999998889999999999999999997 99999887655555555555555544455789999999999999999999


Q ss_pred             CCCcChHHHhc
Q 012762          404 GSKMGATAIKR  414 (457)
Q Consensus       404 s~~~~~~~ll~  414 (457)
                      +    +.+|++
T Consensus       361 s----~~~l~~  367 (374)
T cd05106         361 T----FSQISQ  367 (374)
T ss_pred             C----HHHHHH
Confidence            9    777765

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=8.1e-44  Score=355.96  Aligned_cols=251  Identities=21%  Similarity=0.333  Sum_probs=198.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      ..+|++++.||+|+||+||+|.+.    .++..||+|+..+.         ....|+.+|++++|+||+++++++...+.
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~valK~~~~~---------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  131 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKP----GQPDPVVLKIGQKG---------TTLIEAMLLQNVNHPSVIRMKDTLVSGAI  131 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEEC----CCCceEEEEeCCcc---------ccHHHHHHHHhCCCCCCcChhheEEeCCe
Confidence            347999999999999999999976    36788999986432         12458999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+|||++ .++|..++... ...+++..++.++.||+.||.|||++|||||||||+|||++.++.+||+|||+++....
T Consensus       132 ~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  209 (357)
T PHA03209        132 TCMVLPHY-SSDLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVV  209 (357)
T ss_pred             eEEEEEcc-CCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccccccc
Confidence            99999999 56887777553 35789999999999999999999999999999999999999999999999998753211


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                       ......|
T Consensus       210 ~~-----------------------------------------------------------------------~~~~~~g  218 (357)
T PHA03209        210 AP-----------------------------------------------------------------------AFLGLAG  218 (357)
T ss_pred             Cc-----------------------------------------------------------------------ccccccc
Confidence            00                                                                       0112458


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCC-CCCCCCh---------HHHHHHHHhccc----CCC--------
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT-PFKGIDH---------ELTLANVVARAL----EFP--------  378 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~-Pf~~~~~---------~~~~~~~~~~~~----~~~--------  378 (457)
                      |..|+|||++.+..++.++|||||||++|||+++.. +|.....         ...+..++....    .++        
T Consensus       219 t~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  298 (357)
T PHA03209        219 TVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLV  298 (357)
T ss_pred             cccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHH
Confidence            999999999999999999999999999999998544 4443211         111111111100    011        


Q ss_pred             --------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          379 --------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       379 --------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                          ....++.++.+||.+||+.||.+|||    +.|+|+||||+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpt----a~e~l~hp~f~~~  357 (357)
T PHA03209        299 RGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPS----AEEILNYPMFAQL  357 (357)
T ss_pred             HHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcC----HHHHhcCchhccC
Confidence                                01235667888999999999999999    9999999999863

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=6e-44  Score=350.77  Aligned_cols=253  Identities=23%  Similarity=0.334  Sum_probs=192.2

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--CCcEEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--PRWSCLL  164 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~~~~~lV  164 (457)
                      .++||+|+||+||+|+++.  ..+++.||+|.+....     ....+.+|+++|++++||||+++++++..  +..+|+|
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~--~~~~~~~aiK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv   78 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKD--GKDDRDYALKQIEGTG-----ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   78 (317)
T ss_pred             ccccccCCCeEEEEEEEcc--CCCCceEEEEEECCCC-----CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEE
Confidence            4689999999999998753  2366789999986532     22345679999999999999999999854  4568999


Q ss_pred             EeecCCCChHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE----ccCCCEEEeccC
Q 012762          165 TEFCPGGDLHVLRQRQ-------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV----RSDGHIMLTDFD  233 (457)
Q Consensus       165 ~E~~~~~sL~~~~~~~-------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll----~~~~~vkl~DFG  233 (457)
                      |||+ +++|..++...       ....+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+|||
T Consensus        79 ~e~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07868          79 FDYA-EHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             Eecc-CCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecC
Confidence            9999 66887776542       12358999999999999999999999999999999999999    456789999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++........                                                                   ..
T Consensus       158 ~a~~~~~~~~~-------------------------------------------------------------------~~  170 (317)
T cd07868         158 FARLFNSPLKP-------------------------------------------------------------------LA  170 (317)
T ss_pred             ceeccCCCCcc-------------------------------------------------------------------cc
Confidence            98654311000                                                                   00


Q ss_pred             ccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChH---------HHHHHHHhccc--------
Q 012762          314 RSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------LTLANVVARAL--------  375 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------~~~~~~~~~~~--------  375 (457)
                      .....+||+.|+|||++.+. .++.++|||||||++|||++|++||......         ..+..+.....        
T Consensus       171 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (317)
T cd07868         171 DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWE  250 (317)
T ss_pred             ccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhH
Confidence            01124689999999999875 4899999999999999999999999754321         11111111000        


Q ss_pred             ---CCCC-------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          376 ---EFPK-------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       376 ---~~~~-------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                         ..+.                         ....+.++.+||.+||+.||.+|||    ++|+|+||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t----~~e~l~hp~f  317 (317)
T cd07868         251 DIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT----SEQAMQDPYF  317 (317)
T ss_pred             HHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCC----HHHHhcCCCC
Confidence               0000                         0112456889999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2e-43  Score=335.91  Aligned_cols=256  Identities=26%  Similarity=0.433  Sum_probs=214.0

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-CCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-PRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-~~~~  161 (457)
                      +|++.+.||.|+||.||++.++    .+++.||+|.+..... .......+..|++++++++|+||+++++.+.. +..+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHR----TDGKQYVIKKLNLRNA-SRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLL   75 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEc----CCCcEEEEEEEehhhc-CHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEE
Confidence            5899999999999999999976    3678899999975433 22344567789999999999999999998864 4468


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|.+++.......+++.+++.++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++......
T Consensus        76 ~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~  155 (257)
T cd08223          76 YIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ  155 (257)
T ss_pred             EEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEeccc
Confidence            99999999999998887755567899999999999999999999999999999999999999999999999987544211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       156 ~~----------------------------------------------------------------------~~~~~~~~  165 (257)
T cd08223         156 CD----------------------------------------------------------------------MASTLIGT  165 (257)
T ss_pred             CC----------------------------------------------------------------------ccccccCC
Confidence            00                                                                      00123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||...+.......+..+... +....++..+.+++.+||..||++
T Consensus       166 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~  244 (257)
T cd08223         166 PYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLP-PMPKDYSPELGELIATMLSKRPEK  244 (257)
T ss_pred             cCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCC-CCccccCHHHHHHHHHHhccCccc
Confidence            9999999999988999999999999999999999999877665555555444332 223457889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCC
Q 012762          402 RMGSKMGATAIKRHQFF  418 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f  418 (457)
                      ||+    +.++++||||
T Consensus       245 Rp~----~~~~l~~~~~  257 (257)
T cd08223         245 RPS----VKSILRQPYI  257 (257)
T ss_pred             CCC----HHHHhcCCCC
Confidence            999    9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-45  Score=344.11  Aligned_cols=258  Identities=25%  Similarity=0.373  Sum_probs=212.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-C-CC----Cce
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-H-PF----LPT  150 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H-~n----Iv~  150 (457)
                      ++....+|.++..||+|.||.|..|+++.    ++..||||+++.-.    ...+..+.|+++|.++. + |+    +|.
T Consensus        84 gD~l~~Ry~i~~~lGeGtFGkV~ec~D~~----~~~~vAlKIik~V~----kYreAa~iEi~vLqki~~~DP~g~~rcv~  155 (415)
T KOG0671|consen   84 GDILTNRYEIVDLLGEGTFGKVVECWDRE----TKEHVALKIIKNVD----KYREAALIEIEVLQKINESDPNGKFRCVQ  155 (415)
T ss_pred             ccccccceehhhhhcCCcccceEEEeecC----CCceehHHHHHHHH----HHhhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            34456789999999999999999999874    58899999996432    34455677999999983 2 23    788


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-------
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-------  223 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-------  223 (457)
                      +.++|+..++.|||+|.+ |-++++++..+...+++...++.++.|++.+++|||+.+++|.||||+|||+.+       
T Consensus       156 m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~  234 (415)
T KOG0671|consen  156 MRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTY  234 (415)
T ss_pred             eehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEe
Confidence            899999999999999999 889999999988889999999999999999999999999999999999999942       


Q ss_pred             -------------CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          224 -------------DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       224 -------------~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                                   .-.|+++|||.|......                                                 
T Consensus       235 ~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~-------------------------------------------------  265 (415)
T KOG0671|consen  235 NPKKKVCFIRPLKSTAIKVIDFGSATFDHEH-------------------------------------------------  265 (415)
T ss_pred             ccCCccceeccCCCcceEEEecCCcceeccC-------------------------------------------------
Confidence                         224788888876543321                                                 


Q ss_pred             chhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV  370 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~  370 (457)
                                              ..+++.|..|+|||++.|.+|+.++||||+||||+||++|...|+..++.+.+..+
T Consensus       266 ------------------------hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMM  321 (415)
T KOG0671|consen  266 ------------------------HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMM  321 (415)
T ss_pred             ------------------------cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHH
Confidence                                    13567899999999999999999999999999999999999999998877755443


Q ss_pred             HhcccCCCCC------------------CC-------------C-------------ChHHHHHHHHHhhhCCCCCCCCC
Q 012762          371 VARALEFPKE------------------PS-------------V-------------PGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       371 ~~~~~~~~~~------------------~~-------------~-------------~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ..-..++|..                  ++             +             -.++.|||++||.+||.+|+|  
T Consensus       322 erIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiT--  399 (415)
T KOG0671|consen  322 ERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRIT--  399 (415)
T ss_pred             HHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCcccccc--
Confidence            3322222221                  00             0             014889999999999999999  


Q ss_pred             cChHHHhcCCCCCC
Q 012762          407 MGATAIKRHQFFNG  420 (457)
Q Consensus       407 ~~~~~ll~hp~f~~  420 (457)
                        +.|+|.||||+.
T Consensus       400 --l~EAL~HpFF~~  411 (415)
T KOG0671|consen  400 --LREALSHPFFAR  411 (415)
T ss_pred             --HHHHhcCHHhhc
Confidence              999999999985

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=5.2e-44  Score=359.60  Aligned_cols=266  Identities=20%  Similarity=0.298  Sum_probs=214.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.++||+|+||+||+|.+... ...++..||||+++....  ......+.+|+++|+.+ +||||+++++
T Consensus        29 ~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~--~~~~~~~~~Ei~il~~l~~HpnIv~l~~  106 (375)
T cd05104          29 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHINIVNLLG  106 (375)
T ss_pred             ccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC--cHHHHHHHHHHHHHHHhcCCcceeeeee
Confidence            4566677999999999999999999986422 234667899999865422  23345677899999999 8999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCC----------------------------------------------------
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQP----------------------------------------------------  181 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~----------------------------------------------------  181 (457)
                      ++...+..|+|||||++|+|..++....                                                    
T Consensus       107 ~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  186 (375)
T cd05104         107 ACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKR  186 (375)
T ss_pred             eeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccc
Confidence            9999999999999999999998886532                                                    


Q ss_pred             ---------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          182 ---------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       182 ---------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                                           ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~  266 (375)
T cd05104         187 RSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN  266 (375)
T ss_pred             cccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccC
Confidence                                 12478888999999999999999999999999999999999999999999999864431


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .....                                                                    ......+
T Consensus       267 ~~~~~--------------------------------------------------------------------~~~~~~~  278 (375)
T cd05104         267 DSNYV--------------------------------------------------------------------VKGNARL  278 (375)
T ss_pred             ccccc--------------------------------------------------------------------ccCCCCC
Confidence            11000                                                                    0001235


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|+|||++.+..++.++|||||||++|||++ |..||..........+.+............+.++.+|+.+||..||
T Consensus       279 ~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP  358 (375)
T cd05104         279 PVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADP  358 (375)
T ss_pred             CcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCCh
Confidence            678999999999999999999999999999997 9999987765555555555544444444578899999999999999


Q ss_pred             CCCCCCCcChHHHhcC
Q 012762          400 TRRMGSKMGATAIKRH  415 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~h  415 (457)
                      ++||+    +.+|++.
T Consensus       359 ~~RPs----~~eil~~  370 (375)
T cd05104         359 LKRPT----FKQIVQL  370 (375)
T ss_pred             hHCcC----HHHHHHH
Confidence            99999    8888753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=1.5e-43  Score=341.81  Aligned_cols=259  Identities=31%  Similarity=0.577  Sum_probs=207.3

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHH---HHHcCCCCCceEEEEEEcCCcEEEEE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI---LEMLDHPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~i---l~~l~H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      .||+|+||+||+|.+.    .+++.||+|++.+...........+..|..+   ++..+|+||+.+++++...+..|+||
T Consensus         1 ~ig~g~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   76 (278)
T cd05606           1 IIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFIL   76 (278)
T ss_pred             CcccCCCeEEEEEEEe----cCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEE
Confidence            4799999999999876    4788999999976544322323333344443   44457999999999999999999999


Q ss_pred             eecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccc
Q 012762          166 EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA  245 (457)
Q Consensus       166 E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~  245 (457)
                      ||+.|++|..++...  ..+++..++.++.|++.||.|||+.+|+||||||+||+++.++.++|+|||++.......   
T Consensus        77 e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~---  151 (278)
T cd05606          77 DLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK---  151 (278)
T ss_pred             ecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC---
Confidence            999999998888654  679999999999999999999999999999999999999999999999999875332100   


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCcc
Q 012762          246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  325 (457)
                                                                                           .....|+..|+
T Consensus       152 ---------------------------------------------------------------------~~~~~~~~~y~  162 (278)
T cd05606         152 ---------------------------------------------------------------------PHASVGTHGYM  162 (278)
T ss_pred             ---------------------------------------------------------------------CcCcCCCcCCc
Confidence                                                                                 00235899999


Q ss_pred             CchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCCh---HHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          326 APEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       326 aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |||++.+. .++.++||||+||++|+|++|+.||.+...   .............  ....++.++.+++.+||..||.+
T Consensus       163 aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~l~~~p~~  240 (278)
T cd05606         163 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE--LPDSFSPELRSLLEGLLQRDVNR  240 (278)
T ss_pred             CcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCC--CCCcCCHHHHHHHHHHhhcCHHh
Confidence            99999754 589999999999999999999999987532   2222222222222  23347889999999999999999


Q ss_pred             CC-----CCCcChHHHhcCCCCCCCCchhhhccCC
Q 012762          402 RM-----GSKMGATAIKRHQFFNGVNWALLRCAKP  431 (457)
Q Consensus       402 Rp-----s~~~~~~~ll~hp~f~~~~~~~~~~~~~  431 (457)
                      |+     +    +.++++||||+..+|+.+...+.
T Consensus       241 R~~~~~~~----~~~ll~~~~~~~~~~~~~~~~~~  271 (278)
T cd05606         241 RLGCLGRG----AQEVKEHPFFRSLDWQMVFLQKY  271 (278)
T ss_pred             ccCCCCCC----HHHHHhCccccCCCchHhhhccc
Confidence            99     7    99999999999999998754443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=7.2e-44  Score=382.95  Aligned_cols=268  Identities=26%  Similarity=0.392  Sum_probs=216.9

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ...+..+++|+++++||+|+||+||+|+++    .++..||+|++...... ......+..|+.+|+.|+|||||+++++
T Consensus         6 ~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk----~tg~~vAlKvIk~~~l~-e~~~~~~~~EI~IL~~L~HPNIVrl~d~   80 (1021)
T PTZ00266          6 DDGESRLNEYEVIKKIGNGRFGEVFLVKHK----RTQEFFCWKAISYRGLK-EREKSQLVIEVNVMRELKHKNIVRYIDR   80 (1021)
T ss_pred             cCCccccCCEEEEEEEecCCCeEEEEEEEC----CCCeEEEEEEEeccccC-HHHHHHHHHHHHHHHHcCCCCcCeEEEE
Confidence            345567789999999999999999999987    37889999999765432 2345667889999999999999999998


Q ss_pred             EEc--CCcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHc-------CceeecCCCCCeEEcc
Q 012762          155 LDC--PRWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMM-------GIIYRDLKPENVLVRS  223 (457)
Q Consensus       155 ~~~--~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~-------~iiHrDIKp~NIll~~  223 (457)
                      |..  ...+||||||+.+++|..++...  ....+++..++.|+.||+.||.|||+.       +||||||||+||||+.
T Consensus        81 f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s  160 (1021)
T PTZ00266         81 FLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLST  160 (1021)
T ss_pred             EEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeec
Confidence            854  45689999999999999888653  235699999999999999999999985       4999999999999964


Q ss_pred             C-----------------CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccc
Q 012762          224 D-----------------GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVS  286 (457)
Q Consensus       224 ~-----------------~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (457)
                      +                 +.+||+|||++........                                           
T Consensus       161 ~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~-------------------------------------------  197 (1021)
T PTZ00266        161 GIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESM-------------------------------------------  197 (1021)
T ss_pred             CccccccccccccccCCCCceEEccCCcccccccccc-------------------------------------------
Confidence            2                 3589999999864421100                                           


Q ss_pred             ccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC--CCCccchhhhhhHHHHHHhcCCCCCCCCChH
Q 012762          287 CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE  364 (457)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~--~~~~~sDiwSlG~il~elltG~~Pf~~~~~~  364 (457)
                                                  ....+||+.|+|||++.+.  .++.++||||||||||||++|..||......
T Consensus       198 ----------------------------~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~  249 (1021)
T PTZ00266        198 ----------------------------AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNF  249 (1021)
T ss_pred             ----------------------------ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcH
Confidence                                        0123699999999999654  4789999999999999999999999876655


Q ss_pred             HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          365 LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      ..+...+.....++. ...+.++.+||..||..+|.+||+    +.|+|.|+|++.+..
T Consensus       250 ~qli~~lk~~p~lpi-~~~S~eL~dLI~~~L~~dPeeRPS----a~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        250 SQLISELKRGPDLPI-KGKSKELNILIKNLLNLSAKERPS----ALQCLGYQIIKNVGP  303 (1021)
T ss_pred             HHHHHHHhcCCCCCc-CCCCHHHHHHHHHHhcCChhHCcC----HHHHhccHHHhhcCC
Confidence            544444444333332 346789999999999999999999    999999999986543

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.1e-44  Score=370.12  Aligned_cols=270  Identities=21%  Similarity=0.321  Sum_probs=199.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEE--------------EeehhhhhhhhHHHHHHHHHHHHHHcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK--------------VMDKRELVSRNKESRARIEREILEMLDH  145 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK--------------~~~~~~~~~~~~~~~~~~E~~il~~l~H  145 (457)
                      ..++|+++++||+|+||+||+|.++..   .+..+++|              ++.+...........+.+|+++|+.++|
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~H  222 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRAS---TEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNH  222 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEecc---chhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCC
Confidence            356899999999999999999987542   22222222              1111111122234567889999999999


Q ss_pred             CCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       146 ~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~---~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      +||+++++++...+..|+|||++ +++|..++....   ........++.++.||+.||.|||++|||||||||+|||++
T Consensus       223 pnIv~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~  301 (501)
T PHA03210        223 ENILKIEEILRSEANTYMITQKY-DFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLN  301 (501)
T ss_pred             CCcCcEeEEEEECCeeEEEEecc-ccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC
Confidence            99999999999999999999999 567766654421   12344667888999999999999999999999999999999


Q ss_pred             cCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCC
Q 012762          223 SDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG  302 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (457)
                      .++.+||+|||+++.......                                                           
T Consensus       302 ~~~~vkL~DFGla~~~~~~~~-----------------------------------------------------------  322 (501)
T PHA03210        302 CDGKIVLGDFGTAMPFEKERE-----------------------------------------------------------  322 (501)
T ss_pred             CCCCEEEEeCCCceecCcccc-----------------------------------------------------------
Confidence            999999999999865432110                                                           


Q ss_pred             CCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCC-CCCCC--hHHHHHHHHhccc----
Q 012762          303 TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTP-FKGID--HELTLANVVARAL----  375 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~P-f~~~~--~~~~~~~~~~~~~----  375 (457)
                                .....++||..|+|||++.+..++.++|||||||++|||++|..+ |....  ....+.+++....    
T Consensus       323 ----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  392 (501)
T PHA03210        323 ----------AFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDE  392 (501)
T ss_pred             ----------cccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChh
Confidence                      011134699999999999999999999999999999999998764 43221  1122222221100    


Q ss_pred             CCC--------------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          376 EFP--------------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       376 ~~~--------------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      .++                          ....++.++.++|.+||.+||.+||+    +.|+|.||||....+..+
T Consensus       393 ~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rps----a~elL~hp~f~~~~~~~~  465 (501)
T PHA03210        393 EFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPG----AAELLALPLFSAEEEEEI  465 (501)
T ss_pred             hcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcC----HHHHhhChhhhcCCchHH
Confidence            000                          01134567888999999999999999    999999999998766443

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.7e-43  Score=345.59  Aligned_cols=262  Identities=21%  Similarity=0.293  Sum_probs=206.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC------------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS------------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP  146 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~------------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~  146 (457)
                      +..++|++.++||+|+||.||+|.+....            ...+..||+|++....  .......+.+|+++|++++||
T Consensus         2 ~~~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~   79 (304)
T cd05096           2 FPRGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA--NKNARNDFLKEVKILSRLKDP   79 (304)
T ss_pred             CchhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC--CHHHHHHHHHHHHHHhhcCCC
Confidence            34578999999999999999999864321            1245579999987542  223456688899999999999


Q ss_pred             CCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHcCc
Q 012762          147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP-----------------DKRFHESAVRFYASEVVVALEFLHMMGI  209 (457)
Q Consensus       147 nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~-----------------~~~~~~~~~~~i~~qi~~~L~yLH~~~i  209 (457)
                      ||+++++++...+..||||||+.+++|.+++....                 ...+++..+..++.||+.||.|||+.||
T Consensus        80 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  159 (304)
T cd05096          80 NIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNF  159 (304)
T ss_pred             CeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCc
Confidence            99999999999999999999999999998886531                 1246778899999999999999999999


Q ss_pred             eeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccC
Q 012762          210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH  289 (457)
Q Consensus       210 iHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (457)
                      +||||||+|||++.++.+||+|||+++.........                                            
T Consensus       160 vH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~--------------------------------------------  195 (304)
T cd05096         160 VHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYR--------------------------------------------  195 (304)
T ss_pred             cccCcchhheEEcCCccEEECCCccceecccCceeE--------------------------------------------
Confidence            999999999999999999999999976442111000                                            


Q ss_pred             cchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc--CCCCCCCCChHHHH
Q 012762          290 PKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY--GTTPFKGIDHELTL  367 (457)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt--G~~Pf~~~~~~~~~  367 (457)
                                              ......++..|+|||++.+..++.++|||||||++|||++  |..||.........
T Consensus       196 ------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~  251 (304)
T cd05096         196 ------------------------IQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVI  251 (304)
T ss_pred             ------------------------ecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHH
Confidence                                    0011246788999999998889999999999999999986  67888877665554


Q ss_pred             HHHHhc------ccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          368 ANVVAR------ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       368 ~~~~~~------~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..+...      .......+.++..+.+|+.+||..||++||+    +.+|.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs----~~~i~~  300 (304)
T cd05096         252 ENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPS----FSDIHA  300 (304)
T ss_pred             HHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcC----HHHHHH
Confidence            433221      1112223457889999999999999999999    888843

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-43  Score=338.91  Aligned_cols=256  Identities=38%  Similarity=0.717  Sum_probs=212.9

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH-HcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE-MLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~-~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      +.||.|+||.||+|.+.    .+++.||+|++.+...........+..|..++. .++|+||+++++++..++..|+|||
T Consensus         2 ~~l~~g~~~~v~~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e   77 (260)
T cd05611           2 KPISKGAFGSVYLAKKR----STGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVME   77 (260)
T ss_pred             ccCCcCCCeeEEEEEec----CCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEe
Confidence            56899999999999876    378899999997654433333344455655544 4589999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+++++|..++...  ..+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++.....      
T Consensus        78 ~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------  149 (260)
T cd05611          78 YLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE------  149 (260)
T ss_pred             ccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc------
Confidence            99999999998765  5689999999999999999999999999999999999999999999999998643211      


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                          .....|+..|+|
T Consensus       150 --------------------------------------------------------------------~~~~~~~~~y~~  161 (260)
T cd05611         150 --------------------------------------------------------------------NKKFVGTPDYLA  161 (260)
T ss_pred             --------------------------------------------------------------------cccCCCCcCccC
Confidence                                                                                002358889999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhhhCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLVKDPTRRMG  404 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~~dP~~Rps  404 (457)
                      ||.+.+..++.++||||||+++|+|++|..||...........+.......+.  ...++.++.++|.+||+.||++||+
T Consensus       162 pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~  241 (260)
T cd05611         162 PETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLG  241 (260)
T ss_pred             hhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccC
Confidence            99999888899999999999999999999999887777666666655544332  2357899999999999999999996


Q ss_pred             CCcChHHHhcCCCCCCCCch
Q 012762          405 SKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       405 ~~~~~~~ll~hp~f~~~~~~  424 (457)
                      . ..++|++.||||+.++|.
T Consensus       242 ~-~~~~~~l~~~~~~~~~~~  260 (260)
T cd05611         242 A-NGYQEIKSHPFFKSINWD  260 (260)
T ss_pred             C-CcHHHHHcChHhhcCCCC
Confidence            2 116899999999999994

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.9e-43  Score=338.62  Aligned_cols=258  Identities=19%  Similarity=0.270  Sum_probs=212.0

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +...+|++.+.||+|+||.||+|+++.. ...+..||+|+++...  .......+.+|+.++++++||||+++++++..+
T Consensus         2 i~~~~~~~~~~ig~G~fg~V~~~~~~~~-~~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   78 (266)
T cd05064           2 LDNKSIKIERILGTGRFGELCRGCLKLP-SKRELPVAIHTLRAGC--SDKQRRGFLAEALTLGQFDHSNIVRLEGVITRG   78 (266)
T ss_pred             CchHHeEEeeeecccCCCeEEEEEEecC-CCceeeEEEEecCCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC
Confidence            4456899999999999999999987532 2356789999987542  223345678899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..||||||+++++|..++... ...+++..++.++.||+.||+|||++|++||||||+|||++.++.++++|||.+...
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          79 NTMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             CCcEEEEEeCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            9999999999999999888764 257899999999999999999999999999999999999999999999999975432


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                     .....
T Consensus       158 ~~~~~~---------------------------------------------------------------------~~~~~  168 (266)
T cd05064         158 KSEAIY---------------------------------------------------------------------TTMSG  168 (266)
T ss_pred             cccchh---------------------------------------------------------------------cccCC
Confidence            110000                                                                     00011


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||++.+..++.++|||||||++|||++ |..||...........+. .....+....++..+.+++.+||+.
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~c~~~  247 (266)
T cd05064         169 KSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVE-DGFRLPAPRNCPNLLHQLMLDCWQK  247 (266)
T ss_pred             CCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            35678999999999999999999999999999775 999999877766655544 3344555567889999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++||+    +++|++
T Consensus       248 ~p~~RP~----~~~i~~  260 (266)
T cd05064         248 ERGERPR----FSQIHS  260 (266)
T ss_pred             CchhCCC----HHHHHH
Confidence            9999999    777764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=7.1e-44  Score=339.68  Aligned_cols=265  Identities=38%  Similarity=0.738  Sum_probs=221.9

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||.|+||.||+|++.    .+++.||+|++.+...........+.+|++++++++|+||+++++.+..+...|+||||+.
T Consensus         1 lg~g~~~~vy~~~~~----~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   76 (265)
T cd05579           1 ISKGAYGRVFLAKKK----STGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLP   76 (265)
T ss_pred             CCCCCceEEEEEEEC----CCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCC
Confidence            689999999999986    3688999999987655555566778889999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      +++|..++...  +.+++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++...........   
T Consensus        77 ~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~---  151 (265)
T cd05579          77 GGDLASLLENV--GSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINL---  151 (265)
T ss_pred             CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccc---
Confidence            99999998875  4789999999999999999999999999999999999999999999999998754321110000   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                 ...........++..|++||+
T Consensus       152 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~Pe~  172 (265)
T cd05579         152 -----------------------------------------------------------NDDEKEDKRIVGTPDYIAPEV  172 (265)
T ss_pred             -----------------------------------------------------------ccccccccCcccCccccCHHH
Confidence                                                                       000001112358889999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcCh
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA  409 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~  409 (457)
                      +.+..++.++||||||+++|+|++|..||...........+.......+....++..+.+++.+||+.+|.+||++.. +
T Consensus       173 ~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~-~  251 (265)
T cd05579         173 ILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKS-I  251 (265)
T ss_pred             hcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCCcc-H
Confidence            998889999999999999999999999998887777777776666666555445899999999999999999999111 2


Q ss_pred             HHHhcCCCCCCCCc
Q 012762          410 TAIKRHQFFNGVNW  423 (457)
Q Consensus       410 ~~ll~hp~f~~~~~  423 (457)
                      .++++||||+.++|
T Consensus       252 ~~~l~~~~~~~~~~  265 (265)
T cd05579         252 EEIKNHPFFKGIDW  265 (265)
T ss_pred             HHHhcCccccCCCC
Confidence            99999999999998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.6e-43  Score=342.01  Aligned_cols=256  Identities=26%  Similarity=0.366  Sum_probs=206.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||+|+||.||+|+++    .++..||+|++..... .......+..|+++++.++||||+++++++..++..|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   75 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNK----KTGQIVAMKKIRLESE-EEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLY   75 (285)
T ss_pred             CceEeeEecccCceEEEEEEEC----CCCcEEEEEEeccccc-cCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEE
Confidence            5899999999999999999876    3788999999865422 2233456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      +||||+. ++|..++.... ...+++..++.++.||+.||.|||+.||+|+||||+|||++.+|.++|+|||++......
T Consensus        76 ~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  154 (285)
T cd07861          76 LIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP  154 (285)
T ss_pred             EEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCC
Confidence            9999996 68877776543 356899999999999999999999999999999999999999999999999997543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                      .....++
T Consensus       155 ~~~----------------------------------------------------------------------~~~~~~~  164 (285)
T cd07861         155 VRV----------------------------------------------------------------------YTHEVVT  164 (285)
T ss_pred             ccc----------------------------------------------------------------------ccCCccc
Confidence            000                                                                      0012478


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------C-----
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------F-----  377 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------~-----  377 (457)
                      +.|+|||++.+. .++.++|||||||++|+|++|+.||.+.........+......                  .     
T Consensus       165 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (285)
T cd07861         165 LWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKK  244 (285)
T ss_pred             ccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCc
Confidence            899999998765 4788999999999999999999999876554333322211000                  0     


Q ss_pred             ----CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          378 ----PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       378 ----~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                          .....++.+++++|.+||..||++||+    +.+|++||||
T Consensus       245 ~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~~ll~~~~~  285 (285)
T cd07861         245 GSLRSAVKNLDEDGLDLLEKMLIYDPAKRIS----AKKALNHPYF  285 (285)
T ss_pred             chhHHhcCCCCHHHHHHHHHHhcCChhhCCC----HHHHhcCCCC
Confidence                011346788999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.8e-43  Score=338.03  Aligned_cols=261  Identities=24%  Similarity=0.358  Sum_probs=212.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh---hhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL---VSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +|++.+.||.|+||+||+|...     ++..+|+|.+.....   ........+.+|+++|+.++|+||+++++++...+
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   75 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN-----QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDN   75 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc-----CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCC
Confidence            5888999999999999999753     678899998864321   12233456788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++...  ..+++..+..++.|++.||+|||+.||+|+||+|+||+++.++.++|+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  153 (265)
T cd06631          76 TISIFMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA  153 (265)
T ss_pred             eEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhh
Confidence            999999999999999998765  568999999999999999999999999999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .......                                                                .........
T Consensus       154 ~~~~~~~----------------------------------------------------------------~~~~~~~~~  169 (265)
T cd06631         154 WVGLHGT----------------------------------------------------------------HSNMLKSMH  169 (265)
T ss_pred             hcccccc----------------------------------------------------------------ccccccccC
Confidence            1100000                                                                000011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-CCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-PKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      |+..|+|||++.+..++.++|||||||++|+|++|..||...........+....... .....++.++.+++++||..|
T Consensus       170 ~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  249 (265)
T cd06631         170 GTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRD  249 (265)
T ss_pred             CCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCC
Confidence            8999999999999889999999999999999999999998766554444443332222 233457889999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f  418 (457)
                      |++||+    +.++++||||
T Consensus       250 p~~Rp~----~~~~l~~~~~  265 (265)
T cd06631         250 QHERPS----ALQLLRHDFL  265 (265)
T ss_pred             cccCCC----HHHHhcCCCC
Confidence            999999    9999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.1e-43  Score=342.72  Aligned_cols=256  Identities=27%  Similarity=0.407  Sum_probs=209.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC--  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~--  157 (457)
                      .+.|++.+.||.|+||+||+|.++    .+++.||+|++....    .....+..|+.+++++ +|+||+++++++..  
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~----~~~~~~a~K~~~~~~----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   86 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHV----KTGQLAAIKVMDVTE----DEEEEIKLEINMLKKYSHHRNIATYYGAFIKKS   86 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEc----CCCcEEEEEEEecCh----HHHHHHHHHHHHHHHhcCCCcEEEEeeehhccc
Confidence            357999999999999999999986    377899999986542    2335567789999888 79999999999853  


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                          ....|+||||+.+++|..++.......+++..+..++.||+.||.|||+.||+|+||||+||+++.++.++|+|||
T Consensus        87 ~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg  166 (282)
T cd06636          87 PPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFG  166 (282)
T ss_pred             ccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCc
Confidence                4578999999999999999887666678999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++........                                                                      
T Consensus       167 ~~~~~~~~~~----------------------------------------------------------------------  176 (282)
T cd06636         167 VSAQLDRTVG----------------------------------------------------------------------  176 (282)
T ss_pred             chhhhhcccc----------------------------------------------------------------------
Confidence            8754321100                                                                      


Q ss_pred             ccccccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          314 RSMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                      ......|+..|+|||++.     +..++.++|||||||++|||++|..||...........+............++.++.
T Consensus       177 ~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (282)
T cd06636         177 RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKWSKKFI  256 (282)
T ss_pred             CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCcccccCHHHH
Confidence            011245899999999986     345788999999999999999999999876544444333332222222335788999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ++|.+||+.||.+||+    +.||++||||
T Consensus       257 ~li~~cl~~~p~~Rp~----~~ell~~~~~  282 (282)
T cd06636         257 DFIEGCLVKNYLSRPS----TEQLLKHPFI  282 (282)
T ss_pred             HHHHHHhCCChhhCcC----HHHHhcCCCC
Confidence            9999999999999999    9999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-43  Score=339.97  Aligned_cols=344  Identities=22%  Similarity=0.304  Sum_probs=230.2

Q ss_pred             HHHHHhhhcCCCCCCCCC-ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHH
Q 012762           61 KAIKEATSEGNNNNNNNP-LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI  139 (457)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~i  139 (457)
                      +...+....++.....++ +.-.+|.+.++||+|.|++||+|++.    .+.+.||+||.+....    ..+....|+++
T Consensus        56 E~~~dY~kGGYHpV~IGD~F~~gRY~v~rKLGWGHFSTVWLawDt----q~~r~VAlKVvKSAqh----YtEaAlDEIkl  127 (590)
T KOG1290|consen   56 EDPEDYRKGGYHPVRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDT----QNKRYVALKVVKSAQH----YTEAALDEIKL  127 (590)
T ss_pred             cChhhhhcCCCceeeccccccCceEEEEEeccccccceeEEEeec----cCCeEEEEEEEehhhH----HHHHHHHHHHH
Confidence            344455555665555444 44489999999999999999999998    4788999999986544    33445669999


Q ss_pred             HHHcC-----CC---CCceEEEEEEc----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-H
Q 012762          140 LEMLD-----HP---FLPTLYATLDC----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-M  206 (457)
Q Consensus       140 l~~l~-----H~---nIv~l~~~~~~----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~  206 (457)
                      |+++.     |+   .||+|++.|..    +.++|||+|++ |.+|..+|.....++++...++.|++||+.||.||| +
T Consensus       128 L~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~e  206 (590)
T KOG1290|consen  128 LQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRE  206 (590)
T ss_pred             HHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence            99872     33   49999999964    56899999999 999999999888899999999999999999999999 5


Q ss_pred             cCceeecCCCCCeEEccCCCEEEecc---CCCcCCCC-----CCccc----------c------------------cccC
Q 012762          207 MGIIYRDLKPENVLVRSDGHIMLTDF---DLSLKGDN-----STSTA----------Q------------------LVSD  250 (457)
Q Consensus       207 ~~iiHrDIKp~NIll~~~~~vkl~DF---G~s~~~~~-----~~~~~----------~------------------~~~~  250 (457)
                      +||||.||||+|||+...-.--..|-   |-+....+     ...+.          .                  ....
T Consensus       207 cgIIHTDlKPENvLl~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~  286 (590)
T KOG1290|consen  207 CGIIHTDLKPENVLLCSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEA  286 (590)
T ss_pred             cCccccCCCcceeeeeccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhh
Confidence            69999999999999954310000000   00000000     00000          0                  0000


Q ss_pred             C--------C-CCCC------CCCCCCCCCCC---------------CCCCC-------CCcccCCCCCC----------
Q 012762          251 Q--------S-PPTG------DQQPNDCAVDQ---------------PPFGN-------SSCIIPNCIVP----------  283 (457)
Q Consensus       251 ~--------~-~~~~------~~~~~~~~~~~---------------~~~~~-------~~~~~~~~~~~----------  283 (457)
                      .        . +...      ......+.+..               ....+       .......+...          
T Consensus       287 ~l~~~~~~~~~~~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~  366 (590)
T KOG1290|consen  287 SLAGLEGIEEEPNQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLS  366 (590)
T ss_pred             hhcccccccccccccccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhccccccccccccc
Confidence            0        0 0000      00000000000               00000       00000000000          


Q ss_pred             -------ccccc-------CcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHH
Q 012762          284 -------AVSCL-------HPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIF  349 (457)
Q Consensus       284 -------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~  349 (457)
                             ..+..       .+.-+.+.++.|+|.++|+..+.+..    +.|..|+|||++.|.+|+..+||||++|++|
T Consensus       367 s~~s~~~~~~n~~v~p~~~~~~~di~vKIaDlGNACW~~khFT~D----IQTRQYRapEVllGsgY~~~ADiWS~AC~~F  442 (590)
T KOG1290|consen  367 SPSSPGTIASNPLVNPDIPLPECDIRVKIADLGNACWVHKHFTED----IQTRQYRAPEVLLGSGYSTSADIWSTACMAF  442 (590)
T ss_pred             CcCCccccccccccCCCCCCCccceeEEEeeccchhhhhhhhchh----hhhhhccCcceeecCCCCCchhHHHHHHHHH
Confidence                   00000       23445566788999999988776654    6899999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCC------hHHHHHHHHhcccCCCCCC------------------------------------CCC---
Q 012762          350 ELFYGTTPFKGID------HELTLANVVARALEFPKEP------------------------------------SVP---  384 (457)
Q Consensus       350 elltG~~Pf~~~~------~~~~~~~~~~~~~~~~~~~------------------------------------~~~---  384 (457)
                      ||+||.+.|...+      +++.+..|+.....+|...                                    .++   
T Consensus       443 ELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~  522 (590)
T KOG1290|consen  443 ELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEED  522 (590)
T ss_pred             HhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHH
Confidence            9999999996532      4566777666544444310                                    001   


Q ss_pred             -hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          385 -GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       385 -~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                       .++.+||.-||+++|++||+    |.++|+|||++.+
T Consensus       523 A~~fsdFL~PmLef~PeKR~t----A~~cl~hPwLn~~  556 (590)
T KOG1290|consen  523 AQQFSDFLSPMLEFDPEKRPT----AAQCLKHPWLNPV  556 (590)
T ss_pred             HHHHHHHHHHHHhcCcccccc----HHHHhcCccccCC
Confidence             25779999999999999999    9999999999964

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-45  Score=356.23  Aligned_cols=257  Identities=31%  Similarity=0.478  Sum_probs=222.3

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEe
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      .++||+|.||+||-|.++    ++|+.||||++.|-++.. .....++.|+.||+.++||.||.+...|+..+.+++|||
T Consensus       569 devLGSGQFG~VYgg~hR----ktGrdVAvKvIdKlrFp~-kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVME  643 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHR----KTGRDVAVKVIDKLRFPT-KQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVME  643 (888)
T ss_pred             HhhccCCcceeeecceec----ccCceeeeeeeecccCCC-chHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEeh
Confidence            378999999999999887    599999999999887654 456888999999999999999999999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEeccCCCcCCCCCCc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DFG~s~~~~~~~~  243 (457)
                      .+ +|++.+++-....+++++...+.++.||+.||+|||.++|+|.||||+|||+.+.   -++||||||+++...++..
T Consensus       644 Kl-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF  722 (888)
T KOG4236|consen  644 KL-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF  722 (888)
T ss_pred             hh-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhh
Confidence            99 6666666666667899999999999999999999999999999999999999754   3799999999988764332


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                      .+                                                                       +.+||+.
T Consensus       723 Rr-----------------------------------------------------------------------sVVGTPA  731 (888)
T KOG4236|consen  723 RR-----------------------------------------------------------------------SVVGTPA  731 (888)
T ss_pred             hh-----------------------------------------------------------------------hhcCCcc
Confidence            21                                                                       4579999


Q ss_pred             ccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHHHhhhCCCC
Q 012762          324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       324 y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      |+|||+++..+|+..-|+||.|||+|--+.|..||...  +++-.+|.+..+-+|  .+..++..+.|||+.+|+..-.+
T Consensus       732 YLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd--EdIndQIQNAaFMyPp~PW~eis~~AidlIn~LLqVkm~k  809 (888)
T KOG4236|consen  732 YLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED--EDINDQIQNAAFMYPPNPWSEISPEAIDLINNLLQVKMRK  809 (888)
T ss_pred             ccCHHHHhhccccccccceeeeEEEEEEecccccCCCc--cchhHHhhccccccCCCchhhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999754  345555555555554  34578999999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCC-Cchhh
Q 012762          402 RMGSKMGATAIKRHQFFNGV-NWALL  426 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~-~~~~~  426 (457)
                      |.+    ++..|.|||+++. -|..|
T Consensus       810 Rys----vdk~lsh~Wlq~yq~w~DL  831 (888)
T KOG4236|consen  810 RYS----VDKSLSHPWLQDYQTWLDL  831 (888)
T ss_pred             hcc----hHhhccchhhhcchHHHHH
Confidence            999    9999999999984 35444

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.8e-44  Score=342.84  Aligned_cols=261  Identities=28%  Similarity=0.477  Sum_probs=217.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||.|+||+||+|.+.    .++..||+|++...   .......+..|++++++++|+||+++++++..+...
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~----~~~~~~~iK~~~~~---~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   77 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHK----ETGLFAAAKIIQIE---SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKL   77 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEc----CCCcEEEEEEEeeC---CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeE
Confidence            57999999999999999999876    36789999998643   223456677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|..++... ...+++..++.++.|++.||.|||++||+|+||||+||+++.++.++|+|||++......
T Consensus        78 ~lv~e~~~~~~L~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~  156 (280)
T cd06611          78 WILIEFCDGGALDSIMLEL-ERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST  156 (280)
T ss_pred             EEEeeccCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccc
Confidence            9999999999999887664 256999999999999999999999999999999999999999999999999986543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       157 ~~----------------------------------------------------------------------~~~~~~~~  166 (280)
T cd06611         157 LQ----------------------------------------------------------------------KRDTFIGT  166 (280)
T ss_pred             cc----------------------------------------------------------------------ccceeecc
Confidence            00                                                                      01123589


Q ss_pred             CCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHh
Q 012762          322 HEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       322 ~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ..|+|||++.     ...++.++|||||||++|+|++|..||........+..+..... .+.....++.++.++|.+||
T Consensus       167 ~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  246 (280)
T cd06611         167 PYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCL  246 (280)
T ss_pred             hhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHh
Confidence            9999999985     34467899999999999999999999988766665555554332 22233457889999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ..||.+||+    +.++++||||.....+
T Consensus       247 ~~~p~~Rps----~~~il~~~~~~~~~~~  271 (280)
T cd06611         247 VKDPDDRPT----AAELLKHPFVSDQSDN  271 (280)
T ss_pred             ccChhhCcC----HHHHhcChhhcccchh
Confidence            999999999    9999999999976543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-43  Score=340.33  Aligned_cols=258  Identities=28%  Similarity=0.457  Sum_probs=217.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|+||.||+|.+.    .++..||+|++....  .......+..|+++++.++|+||+++++++..+...
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   74 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDK----RTNQVVAIKVIDLEE--AEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKL   74 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEEC----CCCeEEEEEEeeccc--cchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeE
Confidence            47899999999999999999876    378899999987542  223445677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+|+||+.+++|.+++..   ..+++..++.++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++......
T Consensus        75 ~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  151 (274)
T cd06609          75 WIIMEYCGGGSCLDLLKP---GKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTST  151 (274)
T ss_pred             EEEEEeeCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeeccc
Confidence            999999999999988876   37899999999999999999999999999999999999999999999999997655421


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       152 ~~----------------------------------------------------------------------~~~~~~~~  161 (274)
T cd06609         152 MS----------------------------------------------------------------------KRNTFVGT  161 (274)
T ss_pred             cc----------------------------------------------------------------------ccccccCC
Confidence            10                                                                      01123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      ..|+|||++.+..++.++|||||||++|+|++|..||...........+............++.++.+++.+||..||++
T Consensus       162 ~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~  241 (274)
T cd06609         162 PFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKE  241 (274)
T ss_pred             ccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhh
Confidence            89999999998889999999999999999999999998766554444444333222222237889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ||+    +.++++||||....
T Consensus       242 Rpt----~~~il~~~~~~~~~  258 (274)
T cd06609         242 RPS----AKELLKHKFIKKAK  258 (274)
T ss_pred             CcC----HHHHhhChhhcCCC
Confidence            999    99999999998754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.2e-44  Score=350.66  Aligned_cols=262  Identities=24%  Similarity=0.397  Sum_probs=207.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      .+.-..|+++++||.||.+.||++...     ....||+|.+... ..+.....-++.|++.|.+| +|.+|+++++|-.
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~s-----~~~iyalkkv~~~-~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv  430 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLNS-----DKQIYALKKVVLL-EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEV  430 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeecC-----CCcchhhhHHHHh-hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeec
Confidence            344567999999999999999998753     3345666655332 24556678899999999999 5999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .++++||||||- ..+|..+++... ..++.-.++.|..||++++.++|+.||||-||||.|+|+ -.|.+||+|||+|.
T Consensus       431 ~d~~lYmvmE~G-d~DL~kiL~k~~-~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~  507 (677)
T KOG0596|consen  431 TDGYLYMVMECG-DIDLNKILKKKK-SIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIAN  507 (677)
T ss_pred             cCceEEEEeecc-cccHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEE-EeeeEEeeeechhc
Confidence            999999999976 789998887753 334445889999999999999999999999999999999 57789999999998


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+...+....                                                                    ..
T Consensus       508 aI~~DTTsI~--------------------------------------------------------------------kd  519 (677)
T KOG0596|consen  508 AIQPDTTSIV--------------------------------------------------------------------KD  519 (677)
T ss_pred             ccCcccccee--------------------------------------------------------------------ec
Confidence            7765443321                                                                    11


Q ss_pred             cccCCCCccCchhhcCCC-----------CCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcc--cCCCCCCC
Q 012762          317 SFVGTHEYLAPEIISGEG-----------HGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARA--LEFPKEPS  382 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~-----------~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~--~~~~~~~~  382 (457)
                      +.+||+.||+||.+....           .+.++||||||||||+|++|++||....+. ..+..|.+..  +.+|..+.
T Consensus       520 sQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~  599 (677)
T KOG0596|consen  520 SQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPE  599 (677)
T ss_pred             cccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCC
Confidence            347999999999996443           357899999999999999999999876533 2334444432  24444321


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                       ..++.++|+.||.+||.+||+    +.+||+|||++.+
T Consensus       600 -~~~li~~mK~CL~rdPkkR~s----i~eLLqhpFl~~~  633 (677)
T KOG0596|consen  600 -NDELIDVMKCCLARDPKKRWS----IPELLQHPFLQIQ  633 (677)
T ss_pred             -chHHHHHHHHHHhcCcccCCC----cHHHhcCcccccc
Confidence             234999999999999999999    9999999999863

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=2.2e-43  Score=343.66  Aligned_cols=255  Identities=24%  Similarity=0.375  Sum_probs=213.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+|++.+.||+|+||.||+|.+.    .++..||+|.+.....   .....+.+|+++++.++|+||+++++.+..+...
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~----~~~~~v~ik~~~~~~~---~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~   92 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDV----ATGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDEL   92 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEEC----CCCcEEEEEEEecCCc---chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEE
Confidence            58999999999999999999876    4788999999876432   2345677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|..++..   ..+++..+..++.|++.||.|||+.||+||||||+|||++.++.++|+|||++......
T Consensus        93 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~  169 (296)
T cd06654          93 WVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (296)
T ss_pred             EEeecccCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcccc
Confidence            999999999999998865   45889999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       170 ~~----------------------------------------------------------------------~~~~~~~~  179 (296)
T cd06654         170 QS----------------------------------------------------------------------KRSTMVGT  179 (296)
T ss_pred             cc----------------------------------------------------------------------ccCcccCC
Confidence            00                                                                      00123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-ccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-ALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +.|+|||.+.+..++.++|||||||++|+|++|+.||...........+... ....+....++..+.+++.+||..||+
T Consensus       180 ~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  259 (296)
T cd06654         180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVE  259 (296)
T ss_pred             ccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcc
Confidence            9999999999888999999999999999999999999876654333332222 222223345788899999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +||+    +.+|++||||..
T Consensus       260 ~Rpt----~~eil~~~~~~~  275 (296)
T cd06654         260 KRGS----AKELLQHQFLKI  275 (296)
T ss_pred             cCcC----HHHHhhChhhhc
Confidence            9999    999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.5e-43  Score=336.28  Aligned_cols=261  Identities=24%  Similarity=0.391  Sum_probs=213.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh------hhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS------RNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~------~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      +|.+...||.|+||.||+|.+.    .++..||+|.+.......      ......+.+|+++++.++||||+++++++.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~----~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   76 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNA----SSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSL   76 (267)
T ss_pred             CccccceeecCCCeEEEEEEec----CCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEE
Confidence            4778899999999999999876    367889999886542221      123356778999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..++.++||||+++++|..++...  +.+++..+..++.|++.||+|||+.|++||||+|+||+++.++.++|+|||+++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~  154 (267)
T cd06628          77 DADHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             eCCccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCc
Confidence            999999999999999999998775  568999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ..........                                                                ......
T Consensus       155 ~~~~~~~~~~----------------------------------------------------------------~~~~~~  170 (267)
T cd06628         155 KLEANSLSTK----------------------------------------------------------------TNGARP  170 (267)
T ss_pred             ccccccccCC----------------------------------------------------------------cccccc
Confidence            5532110000                                                                000011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .+.|+..|+|||++.+..++.++|||||||++|+|++|+.||...........+... ........++..+.++|.+||+
T Consensus       171 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~  249 (267)
T cd06628         171 SLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGEN-ASPEIPSNISSEAIDFLEKTFE  249 (267)
T ss_pred             ccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhcc-CCCcCCcccCHHHHHHHHHHcc
Confidence            245889999999999888999999999999999999999999886655544443332 1222234578999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      .||.+||+    +.+|++||||
T Consensus       250 ~~p~~Rp~----~~~il~~~~~  267 (267)
T cd06628         250 IDHNKRPT----AAELLKHPFL  267 (267)
T ss_pred             CCchhCcC----HHHHhhCCCC
Confidence            99999999    9999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.7e-43  Score=340.28  Aligned_cols=257  Identities=28%  Similarity=0.449  Sum_probs=212.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      -|++.++||.|+||.||+|.+.    .++..+|+|.+....   ......+.+|+++++.++|+||+++++++...+..|
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~----~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~   78 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNK----ETGVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLW   78 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEEC----CCCeEEEEEEeCCCC---HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEE
Confidence            3688899999999999999876    377889999986542   234556778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++... ...+++..+..++.||+.||.|||+.||+||||||+|||++.++.++|+|||++.......
T Consensus        79 ~v~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~  157 (282)
T cd06643          79 ILIEFCAGGAVDAVMLEL-ERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI  157 (282)
T ss_pred             EEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccc
Confidence            999999999998876542 3568999999999999999999999999999999999999999999999999975432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       158 ~----------------------------------------------------------------------~~~~~~~~~  167 (282)
T cd06643         158 Q----------------------------------------------------------------------RRDSFIGTP  167 (282)
T ss_pred             c----------------------------------------------------------------------ccccccccc
Confidence            0                                                                      011235899


Q ss_pred             CccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhh
Q 012762          323 EYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       323 ~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .|+|||++.     +..++.++|||||||++|||++|.+||...........+..... ..+....++.++.++|.+||.
T Consensus       168 ~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  247 (282)
T cd06643         168 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLE  247 (282)
T ss_pred             cccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHcc
Confidence            999999984     34578899999999999999999999988766555555543322 223334578899999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .||++||+    ++++++||||...
T Consensus       248 ~~p~~Rp~----~~~il~~~~~~~~  268 (282)
T cd06643         248 KNVDARWT----TTQLLQHPFVTVN  268 (282)
T ss_pred             CChhhCcC----HHHHhcCCCEecc
Confidence            99999999    9999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.5e-43  Score=337.30  Aligned_cols=254  Identities=33%  Similarity=0.623  Sum_probs=215.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||.|+||.||+|.+.    .++..||+|++.+...........+..|++++++++||||+++++++..+...|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   76 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKR----DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMY   76 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEc----cCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEE
Confidence            4899999999999999999876    378899999998766555456678888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+.|++|..++...  ..+++..+..++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++.......
T Consensus        77 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  154 (258)
T cd05578          77 LVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT  154 (258)
T ss_pred             EEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc
Confidence            999999999999888775  579999999999999999999999999999999999999999999999999875432111


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                       .....|+.
T Consensus       155 ~-----------------------------------------------------------------------~~~~~~~~  163 (258)
T cd05578         155 L-----------------------------------------------------------------------TTSTSGTP  163 (258)
T ss_pred             c-----------------------------------------------------------------------ccccCCCh
Confidence            0                                                                       01224888


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh--HHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      .|+|||++.+..++.++|+||||+++|+|++|..||.....  ...+...... ........++.++.++|.+||..||.
T Consensus       164 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~  242 (258)
T cd05578         164 GYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET-ADVLYPATWSTEAIDAINKLLERDPQ  242 (258)
T ss_pred             hhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc-ccccCcccCcHHHHHHHHHHccCChh
Confidence            99999999988899999999999999999999999987663  2223332221 22233345889999999999999999


Q ss_pred             CCCCCCcCh--HHHhcCCCC
Q 012762          401 RRMGSKMGA--TAIKRHQFF  418 (457)
Q Consensus       401 ~Rps~~~~~--~~ll~hp~f  418 (457)
                      +||+    +  .|+++||||
T Consensus       243 ~R~~----~~~~~l~~~~~~  258 (258)
T cd05578         243 KRLG----DNLKDLKNHPYF  258 (258)
T ss_pred             HcCC----ccHHHHhcCCCC
Confidence            9999    7  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=3.7e-43  Score=339.41  Aligned_cols=256  Identities=27%  Similarity=0.420  Sum_probs=208.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|.++    .+++.||+|++..... .......+..|+++++.++|+||+++++++......
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   75 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNR----ETGQIVAIKKFVESED-DPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKL   75 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEEC----CCCcEEEEEEEeeccc-CccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEE
Confidence            47999999999999999999886    4788999999865432 122345567899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ++||||++++.|..++...  ..+++..++.++.||+.||.|||+.||+|+||||+||+++.++.++|+|||++......
T Consensus        76 ~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07847          76 HLVFEYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGP  153 (286)
T ss_pred             EEEEeccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCC
Confidence            9999999998888776543  46899999999999999999999999999999999999999999999999997644321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......++
T Consensus       154 ~~----------------------------------------------------------------------~~~~~~~~  163 (286)
T cd07847         154 GD----------------------------------------------------------------------DYTDYVAT  163 (286)
T ss_pred             cc----------------------------------------------------------------------cccCcccc
Confidence            10                                                                      00123478


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-------------------cCCCC--
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-------------------LEFPK--  379 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-------------------~~~~~--  379 (457)
                      ..|+|||++.+. .++.++|||||||++|+|++|..||.+....+....+....                   ...+.  
T Consensus       164 ~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (286)
T cd07847         164 RWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPE  243 (286)
T ss_pred             cccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcc
Confidence            899999998764 57899999999999999999999998876554443332210                   00111  


Q ss_pred             --------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 --------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 --------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                              ...++..+.+|+.+||..||++||+    +.|++.||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~----~~eil~~~~f  286 (286)
T cd07847         244 TREPLESKFPNISSPALSFLKGCLQMDPTERLS----CEELLEHPYF  286 (286)
T ss_pred             cccCHHHHhccCCHHHHHHHHHHhcCCccccCC----HHHHhcCCCC
Confidence                    1245778999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.2e-43  Score=339.70  Aligned_cols=254  Identities=25%  Similarity=0.410  Sum_probs=209.1

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|.+.+.||+|+||.||+|.+.    .+++.||+|+++....   .....+.+|+.+++.++||||+++++++...+.
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~---~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~   80 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNV----NTGELAAIKVIKLEPG---EDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDK   80 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEc----CCCcEEEEEEEecCch---hHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCE
Confidence            457999999999999999999876    4788999999865421   233456779999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++...  +.+++..++.++.||+.||.|||+.||+|+||||+||+++.++.++|+|||++.....
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06645          81 LWICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITA  158 (267)
T ss_pred             EEEEEeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccC
Confidence            99999999999999988764  5799999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       159 ~~~----------------------------------------------------------------------~~~~~~~  168 (267)
T cd06645         159 TIA----------------------------------------------------------------------KRKSFIG  168 (267)
T ss_pred             ccc----------------------------------------------------------------------ccccccC
Confidence            100                                                                      0012358


Q ss_pred             CCCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---CCCCChHHHHHHHHH
Q 012762          321 THEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---EPSVPGPAKDLIAQL  394 (457)
Q Consensus       321 t~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~  394 (457)
                      +..|+|||++.   ...++.++|||||||++|+|++|..||...................+.   ...++..+.+++.+|
T Consensus       169 ~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  248 (267)
T cd06645         169 TPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMA  248 (267)
T ss_pred             cccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHH
Confidence            99999999985   445788999999999999999999999765544333333333332222   124678899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQF  417 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~  417 (457)
                      |..||++||+    +++|++|||
T Consensus       249 l~~~P~~R~~----~~~ll~~~~  267 (267)
T cd06645         249 LTKNPKKRPT----AEKLLQHPF  267 (267)
T ss_pred             ccCCchhCcC----HHHHhcCCC
Confidence            9999999999    999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=6.7e-43  Score=332.27  Aligned_cols=256  Identities=25%  Similarity=0.355  Sum_probs=219.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++++.||.|+||.||+++..    .++..+++|.+....... .....+.+|++++++++|+||+++++++.+.+..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~----~~~~~~~~k~~~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~   75 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRT----EDDSLVVWKEVNLTRLSE-KERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLL   75 (256)
T ss_pred             CceEeeEecccCCceEEEEEEc----CCCcEEEEEEEeecccch-hHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEE
Confidence            5899999999999999999876    478899999986554322 34556778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++.......
T Consensus        76 ~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~  155 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY  155 (256)
T ss_pred             EEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccccc
Confidence            99999999999999887655678999999999999999999999999999999999999999999999999875442211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       156 ~----------------------------------------------------------------------~~~~~~~~~  165 (256)
T cd08221         156 S----------------------------------------------------------------------MAETVVGTP  165 (256)
T ss_pred             c----------------------------------------------------------------------cccccCCCc
Confidence            0                                                                      001235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||++.+..++.++|||||||++|||++|..||......+....+..+.... ....++.++.+++.+||..||.+|
T Consensus       166 ~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~l~~~p~~R  244 (256)
T cd08221         166 YYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTP-VVSVYSSELISLVHSLLQQDPEKR  244 (256)
T ss_pred             cccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC-CccccCHHHHHHHHHHcccCcccC
Confidence            9999999998888999999999999999999999998877767676666554433 235578899999999999999999


Q ss_pred             CCCCcChHHHhcCCCC
Q 012762          403 MGSKMGATAIKRHQFF  418 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f  418 (457)
                      |+    +.++++|+|+
T Consensus       245 ~s----~~~ll~~~~l  256 (256)
T cd08221         245 PT----ADEVLDQPLL  256 (256)
T ss_pred             CC----HHHHhhCcCC
Confidence            99    9999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=5.7e-43  Score=332.73  Aligned_cols=256  Identities=23%  Similarity=0.411  Sum_probs=218.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||+|+||.||++...    .+++.||+|.+...... ......+.+|+++++.++|+||+++++++...+..|
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSK----EDGKQYVIKEINISKMS-PKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLY   75 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEc----CCCCEEEEEEEEhHhCC-hHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEE
Confidence            5899999999999999999876    37889999999765432 234457788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+.+++|..++.......+++..+..++.|++.||.|||++|++|+||+|+|||++.++.++|+|||++.......
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~  155 (256)
T cd08218          76 IVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTV  155 (256)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcch
Confidence            99999999999988876555568999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       156 ~----------------------------------------------------------------------~~~~~~~~~  165 (256)
T cd08218         156 E----------------------------------------------------------------------LARTCIGTP  165 (256)
T ss_pred             h----------------------------------------------------------------------hhhhccCCc
Confidence            0                                                                      000234888


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||++.+..++.++|+|||||++|+|++|..||...........++.+... +....++.++.++|.+||..+|.+|
T Consensus       166 ~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~R  244 (256)
T cd08218         166 YYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYP-PVSSHYSYDLRNLVSQLFKRNPRDR  244 (256)
T ss_pred             cccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCC-CCcccCCHHHHHHHHHHhhCChhhC
Confidence            999999999888999999999999999999999999887776666666655432 2334578899999999999999999


Q ss_pred             CCCCcChHHHhcCCCC
Q 012762          403 MGSKMGATAIKRHQFF  418 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f  418 (457)
                      |+    +.++++||||
T Consensus       245 p~----~~~vl~~~~~  256 (256)
T cd08218         245 PS----VNSILEKNFI  256 (256)
T ss_pred             cC----HHHHhhCcCC
Confidence            99    9999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-46  Score=342.37  Aligned_cols=256  Identities=23%  Similarity=0.382  Sum_probs=217.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      -|.++.+||+|+||.||+|.++    .+|..+|||.+..     +...+++..|+.|+++++.++||++||.+-....++
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~----EsG~v~AIK~VPV-----~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLW  104 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHR----ESGHVLAIKKVPV-----DTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLW  104 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHh----ccCcEEEEEecCc-----cchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceE
Confidence            4888999999999999988876    6899999999854     356677888999999999999999999888888999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +|||||..|++.+++... +..+++.++..+++..+.||+|||...-||||||..|||++.+|+.||+|||.+..+.+--
T Consensus       105 IVMEYCGAGSiSDI~R~R-~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM  183 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRAR-RKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM  183 (502)
T ss_pred             eehhhcCCCcHHHHHHHh-cCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhH
Confidence            999999999999988654 4789999999999999999999999999999999999999999999999999985543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                                                                                            .+..+.+||+
T Consensus       184 ----------------------------------------------------------------------AKRNTVIGTP  193 (502)
T KOG0574|consen  184 ----------------------------------------------------------------------AKRNTVIGTP  193 (502)
T ss_pred             ----------------------------------------------------------------------HhhCccccCc
Confidence                                                                                  1223568999


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-ccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-ALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      -|||||++...+|+.++||||||++..||..|++||.+......+..|-.. ...+..+..+++++.|++++||..+|++
T Consensus       194 FWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~  273 (502)
T KOG0574|consen  194 FWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEE  273 (502)
T ss_pred             ccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999876543222222111 1112233458899999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      |.+    +.+|++|||.++..
T Consensus       274 R~T----A~~L~~H~FiknA~  290 (502)
T KOG0574|consen  274 RKT----ALRLCEHTFIKNAP  290 (502)
T ss_pred             HHH----HHHHhhhhhhcCCC
Confidence            999    99999999998743

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.1e-43  Score=338.05  Aligned_cols=254  Identities=24%  Similarity=0.389  Sum_probs=207.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||+|+||.||+|.++    .+++.||+|++.....   .....+.+|+.+++.++|+||+++++++...+.
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~----~~~~~~aik~~~~~~~---~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~   80 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNL----HTGELAAVKIIKLEPG---DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREK   80 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEEC----CCCeEEEEEEEecCcc---chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCE
Confidence            457999999999999999999876    4788999999864321   233457789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++...  ..+++..+..++.|++.||.|||+.||+||||||+||+++.++.++|+|||++.....
T Consensus        81 ~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  158 (267)
T cd06646          81 LWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITA  158 (267)
T ss_pred             EEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecc
Confidence            99999999999999888754  5789999999999999999999999999999999999999999999999999754421


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       159 ~~~----------------------------------------------------------------------~~~~~~~  168 (267)
T cd06646         159 TIA----------------------------------------------------------------------KRKSFIG  168 (267)
T ss_pred             ccc----------------------------------------------------------------------ccCcccc
Confidence            100                                                                      0012358


Q ss_pred             CCCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---CCCCChHHHHHHHHH
Q 012762          321 THEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---EPSVPGPAKDLIAQL  394 (457)
Q Consensus       321 t~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~  394 (457)
                      +..|+|||.+.   ...++.++|||||||++|||++|+.||...........+....+..+.   ...++..+.++|++|
T Consensus       169 ~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  248 (267)
T cd06646         169 TPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKIS  248 (267)
T ss_pred             CccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHH
Confidence            89999999985   334788999999999999999999999765443333332222222222   234678999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQF  417 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~  417 (457)
                      |..||++||+    +++|++|+|
T Consensus       249 l~~~P~~Rp~----~~~il~~l~  267 (267)
T cd06646         249 LTKNPKKRPT----AERLLTHLF  267 (267)
T ss_pred             hhCChhhCcC----HHHHhcCCC
Confidence            9999999999    999999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=4.8e-43  Score=334.80  Aligned_cols=261  Identities=25%  Similarity=0.378  Sum_probs=216.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|+||+||+|.+.    .++..+|+|++.......  ....+.+|+++|+.++|+||+++++.+..++..
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICL----PNNEKVAIKRIDLEKCQT--SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDEL   74 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEc----CCCcEEEEEEeccCCcch--HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEE
Confidence            47999999999999999999876    367889999987543322  556788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPD-KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~-~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |+|||++++++|.+++..... ..+++..++.++.||+.||.|||+.||+|+||+|+||+++.++.++|+|||++.....
T Consensus        75 ~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~  154 (267)
T cd06610          75 WLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLAD  154 (267)
T ss_pred             EEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhcc
Confidence            999999999999999876432 5689999999999999999999999999999999999999999999999999765432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .....                                                                  ......+.|
T Consensus       155 ~~~~~------------------------------------------------------------------~~~~~~~~~  168 (267)
T cd06610         155 GGDRT------------------------------------------------------------------RKVRKTFVG  168 (267)
T ss_pred             Ccccc------------------------------------------------------------------ccccccccC
Confidence            11100                                                                  000113468


Q ss_pred             CCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCC---CCCChHHHHHHHHHh
Q 012762          321 THEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKE---PSVPGPAKDLIAQLL  395 (457)
Q Consensus       321 t~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~ll~~~L  395 (457)
                      +..|+|||++... .++.++|+|||||++|+|++|+.||........+......... ++..   ..++..+.+++.+||
T Consensus       169 ~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  248 (267)
T cd06610         169 TPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCL  248 (267)
T ss_pred             ChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHc
Confidence            9999999999877 6899999999999999999999999887666555555544221 1111   256788999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ..||++||+    +.+|++||||
T Consensus       249 ~~~p~~Rp~----~~~ll~~p~~  267 (267)
T cd06610         249 QKDPSKRPT----AEELLKHKFF  267 (267)
T ss_pred             CCChhhCcC----HHHHhhCCCC
Confidence            999999999    9999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=5.2e-43  Score=341.15  Aligned_cols=256  Identities=24%  Similarity=0.377  Sum_probs=215.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+|++.+.||.|+||+||+|.+.    .+++.||+|.+.....   .....+.+|+++++.++|+||+++++++...+..
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~----~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   91 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDV----ATGQEVAIKQINLQKQ---PKKELIINEILVMKELKNPNIVNFLDSFLVGDEL   91 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEc----CCCcEEEEEEEecccC---chHHHHHHHHHHHHhcCCCceeeeeeeEecCceE
Confidence            56999999999999999999876    4788999999865422   3456678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+++|..++..   ..+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++......
T Consensus        92 ~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~  168 (296)
T cd06655          92 FVVMEYLAGGSLTDVVTE---TCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE  168 (296)
T ss_pred             EEEEEecCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccc
Confidence            999999999999988865   45899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       169 ~~----------------------------------------------------------------------~~~~~~~~  178 (296)
T cd06655         169 QS----------------------------------------------------------------------KRSTMVGT  178 (296)
T ss_pred             cc----------------------------------------------------------------------cCCCcCCC
Confidence            00                                                                      00123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-cCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-LEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      ..|+|||.+.+..++.++|||||||++|+|++|..||.+.........+.... ........++..+.++|.+||..||+
T Consensus       179 ~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~  258 (296)
T cd06655         179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVE  258 (296)
T ss_pred             ccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChh
Confidence            99999999998889999999999999999999999998876554444433322 12223345788999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      +||+    +.+|++||||+..
T Consensus       259 ~Rpt----~~~il~~~~~~~~  275 (296)
T cd06655         259 KRGS----AKELLQHPFLKLA  275 (296)
T ss_pred             hCCC----HHHHhhChHhhhc
Confidence            9999    9999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-44  Score=332.08  Aligned_cols=265  Identities=29%  Similarity=0.450  Sum_probs=219.1

Q ss_pred             cee-EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcE
Q 012762           84 LRF-VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        84 ~~~-~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~  161 (457)
                      |++ .+.||+|+|+.|--|...    .+|..||||++.|...   ....++.+|++++..+ +|+||+.++++|+++...
T Consensus        79 YkLt~e~LGeGAyasVqtcv~i----~t~~EYAVKiidKq~g---HsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~F  151 (463)
T KOG0607|consen   79 YKLTSELLGEGAYASVQTCVSI----QTGKEYAVKIIDKQPG---HSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRF  151 (463)
T ss_pred             HHhHHHHhcCccceeeeeeeee----ccchhhhhhhhhcCCc---hHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceE
Confidence            444 367999999999988765    5899999999988743   4567888899999998 699999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~DFG~s~~~  238 (457)
                      |||||.+.||.|...++.+  ..|++.++..+..+|+.||.|||.+||.||||||+|||.....   -||||||.+.--.
T Consensus       152 YLVfEKm~GGplLshI~~~--~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~  229 (463)
T KOG0607|consen  152 YLVFEKMRGGPLLSHIQKR--KHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGI  229 (463)
T ss_pred             EEEEecccCchHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeecccccccc
Confidence            9999999999998777765  7799999999999999999999999999999999999998665   4799999875221


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                   +|.             +                               ..+....+-
T Consensus       230 k~~~-------------------~~s-------------p-------------------------------astP~L~tP  246 (463)
T KOG0607|consen  230 KLNN-------------------DCS-------------P-------------------------------ASTPELLTP  246 (463)
T ss_pred             ccCC-------------------CCC-------------C-------------------------------CCCccccCc
Confidence            1000                   000             0                               001122344


Q ss_pred             cCCCCccCchhhc---C--CCCCccchhhhhhHHHHHHhcCCCCCCCCC---------------hHHHHHHHHhcccCCC
Q 012762          319 VGTHEYLAPEIIS---G--EGHGNAVDWWTLGIFIFELFYGTTPFKGID---------------HELTLANVVARALEFP  378 (457)
Q Consensus       319 ~gt~~y~aPE~l~---~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~---------------~~~~~~~~~~~~~~~~  378 (457)
                      +|+..|||||+..   +  ..|+.+.|.||||+|||-||.|.+||.+.-               .+..++.|..+.+.+|
T Consensus       247 vGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFP  326 (463)
T KOG0607|consen  247 VGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFP  326 (463)
T ss_pred             ccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCC
Confidence            7999999999974   2  348999999999999999999999997642               3456888999999998


Q ss_pred             C--CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          379 K--EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       379 ~--~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .  +..++.+.++++..+|..|+.+|.+    +.++++|||++...-.
T Consensus       327 dkdWahIS~eakdlisnLlvrda~~rls----a~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  327 DKDWAHISSEAKDLISNLLVRDAKQRLS----AAQVLNHPWVQRCAPE  370 (463)
T ss_pred             hhhhHHhhHHHHHHHHHHHhccHHhhhh----hhhccCCccccccchh
Confidence            6  4578999999999999999999999    9999999999975443

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=5e-43  Score=334.28  Aligned_cols=255  Identities=20%  Similarity=0.328  Sum_probs=214.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      |.+..++|++.++||+|+||.||+|.+.     .+..||+|.+.....    ..+.+..|++++++++|+||+++++++.
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~-----~~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~   71 (261)
T cd05072           1 WEIPRESIKLVKKLGAGQFGEVWMGYYN-----NSTKVAVKTLKPGTM----SVQAFLEEANLMKTLQHDKLVRLYAVVT   71 (261)
T ss_pred             CcCchHHeEEeeecCCcCCceEEEEEec-----CCceEEEEEccCCch----hHHHHHHHHHHHHhCCCCCeeeEEEEEc
Confidence            4577789999999999999999999864     456799998865322    3456788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+..++||||+.+++|.+++.......+++..++.++.||+.||+|||+.+++||||||+||+++.++.++|+|||++.
T Consensus        72 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~  151 (261)
T cd05072          72 KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             CCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccce
Confidence            99999999999999999999887666778999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       152 ~~~~~~~~~---------------------------------------------------------------------~~  162 (261)
T cd05072         152 VIEDNEYTA---------------------------------------------------------------------RE  162 (261)
T ss_pred             ecCCCceec---------------------------------------------------------------------cC
Confidence            543211000                                                                     00


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |..||...........+. .....+....++.++.+++.+||
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l  241 (261)
T cd05072         163 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQ-RGYRMPRMENCPDELYDIMKTCW  241 (261)
T ss_pred             CCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHc
Confidence            1236778999999998889999999999999999998 999998876665555544 34455555668899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhc
Q 012762          396 VKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..||++||+    ++++++
T Consensus       242 ~~~p~~Rp~----~~~i~~  256 (261)
T cd05072         242 KEKAEERPT----FDYLQS  256 (261)
T ss_pred             cCCcccCcC----HHHHHH
Confidence            999999999    777754

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.8e-43  Score=343.13  Aligned_cols=255  Identities=24%  Similarity=0.370  Sum_probs=211.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+|++++.||+|+||.||+|.+.    .++..||+|.+.....   .....+..|+.+++.++|+||+++++++..++..
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~----~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   91 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDI----ATGQEVAIKQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDEL   91 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEEC----CCCCEEEEEEEecCcc---chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEE
Confidence            68999999999999999999876    4788999999975432   2345677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|..++..   ..+++..+..++.|++.||.|||+.||+||||||+|||++.++.++|+|||++......
T Consensus        92 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~  168 (297)
T cd06656          92 WVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (297)
T ss_pred             EEeecccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCC
Confidence            999999999999998865   45899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                      .....|+
T Consensus       169 ~~~----------------------------------------------------------------------~~~~~~~  178 (297)
T cd06656         169 QSK----------------------------------------------------------------------RSTMVGT  178 (297)
T ss_pred             ccC----------------------------------------------------------------------cCcccCC
Confidence            100                                                                      0123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-ccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-ALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +.|+|||.+.+..++.++|||||||++|+|++|..||...........+... .........++..+++|+.+||..||+
T Consensus       179 ~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  258 (297)
T cd06656         179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVD  258 (297)
T ss_pred             ccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChh
Confidence            8999999999888999999999999999999999999775543322222211 111122345778899999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +||+    +.++++||||+.
T Consensus       259 ~Rps----~~~il~~~~~~~  274 (297)
T cd06656         259 RRGS----AKELLQHPFLKL  274 (297)
T ss_pred             hCcC----HHHHhcCchhcc
Confidence            9999    999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=6.1e-43  Score=343.71  Aligned_cols=284  Identities=18%  Similarity=0.268  Sum_probs=220.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +...+|++.+.||+|+||+||+|.+.......+..||+|+++..  .......++..|+.+++.++|+||+++++++...
T Consensus         4 ~~~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~   81 (316)
T cd05108           4 LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS   81 (316)
T ss_pred             cchhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC
Confidence            44568999999999999999999986533334456999998643  2233456678899999999999999999999765


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                       ..++|+||+.+|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        82 -~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~  159 (316)
T cd05108          82 -TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (316)
T ss_pred             -CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccc
Confidence             5679999999999998887642 46888999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                    .....
T Consensus       160 ~~~~~~~--------------------------------------------------------------------~~~~~  171 (316)
T cd05108         160 GADEKEY--------------------------------------------------------------------HAEGG  171 (316)
T ss_pred             cCCCcce--------------------------------------------------------------------eccCC
Confidence            3211100                                                                    00011


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||++.+..++.++|||||||++|||++ |..||.+....+ +..++......+....++.++.+++.+||..
T Consensus       172 ~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  250 (316)
T cd05108         172 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-ISSILEKGERLPQPPICTIDVYMIMVKCWMI  250 (316)
T ss_pred             ccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH-HHHHHhCCCCCCCCCCCCHHHHHHHHHHccC
Confidence            24678999999999999999999999999999997 999998766544 3445555556666667888999999999999


Q ss_pred             CCCCCCCCCcChHHHhcCC--CC-CCCCchhhhccCCCCCCCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQ--FF-NGVNWALLRCAKPPFIPRPVT  439 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp--~f-~~~~~~~~~~~~~~~~~~~~~  439 (457)
                      ||++||+    +.+++.+-  .. ...+|..+....+..+|.|..
T Consensus       251 ~p~~Rps----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (316)
T cd05108         251 DADSRPK----FRELIIEFSKMARDPQRYLVIQGDERMHLPSPTD  291 (316)
T ss_pred             ChhhCcC----HHHHHHHHHHHHcCCchheEecCCcccCCCCCch
Confidence            9999999    77777651  11 112333344445555555544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=7.3e-43  Score=334.35  Aligned_cols=259  Identities=25%  Similarity=0.394  Sum_probs=208.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh--hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--C
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV--SRNKESRARIEREILEMLDHPFLPTLYATLDC--P  158 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~  158 (457)
                      +|++.+.||+|+||.||+|.+.    .++..||+|++......  .......+.+|+++++.++|+||+++++++..  .
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~----~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   78 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDV----DTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAE   78 (266)
T ss_pred             CccccceecCCCCEEEEEEEEc----CCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCC
Confidence            6899999999999999999876    37889999998654221  12234567889999999999999999999865  3


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...+++|||+++++|..++...  ..+++..++.++.||+.||.|||+++|+|+||||+||+++.++.++|+|||++...
T Consensus        79 ~~~~l~~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~  156 (266)
T cd06651          79 KTLTIFMEYMPGGSVKDQLKAY--GALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRL  156 (266)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcccc
Confidence            5788999999999999888764  46899999999999999999999999999999999999999999999999997644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                   ......
T Consensus       157 ~~~~~~~-------------------------------------------------------------------~~~~~~  169 (266)
T cd06651         157 QTICMSG-------------------------------------------------------------------TGIRSV  169 (266)
T ss_pred             ccccccC-------------------------------------------------------------------CccccC
Confidence            2110000                                                                   000123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      .|+..|+|||++.+..++.++|||||||++|||++|+.||...........+............++..+.+++ +||..|
T Consensus       170 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~  248 (266)
T cd06651         170 TGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDFL-GCIFVE  248 (266)
T ss_pred             CccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHHH-HHhcCC
Confidence            4889999999999888999999999999999999999999876655444443332222222234677888998 677789


Q ss_pred             CCCCCCCCcChHHHhcCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~  419 (457)
                      |++||+    +.||++||||+
T Consensus       249 p~~Rp~----~~eil~hp~~~  265 (266)
T cd06651         249 ARHRPS----AEELLRHPFAQ  265 (266)
T ss_pred             hhhCcC----HHHHhcCcccc
Confidence            999999    99999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.1e-42  Score=332.77  Aligned_cols=260  Identities=25%  Similarity=0.409  Sum_probs=210.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh--hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV--SRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      .+|++.+.||+|+||.||+|.++    .++..||+|++......  .......+.+|++++++++|+||+++++++.+. 
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~----~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   77 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDA----DTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM   77 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEc----CCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC
Confidence            47999999999999999999876    47889999998643211  122345778899999999999999999998763 


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       ..+++||||+++++|.+++...  ..+++..+..++.|++.||.|||+++|+|+||||+||+++.++.++|+|||++..
T Consensus        78 ~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          78 ERTLSIFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             CceEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccc
Confidence             4678999999999999988765  5588999999999999999999999999999999999999999999999998764


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                   .....
T Consensus       156 ~~~~~~~~-------------------------------------------------------------------~~~~~  168 (265)
T cd06652         156 LQTICLSG-------------------------------------------------------------------TGMKS  168 (265)
T ss_pred             cccccccc-------------------------------------------------------------------ccccc
Confidence            42110000                                                                   00112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ..|+..|+|||++.+..++.++|||||||++|+|++|+.||...........+.........+..++..+.++|.+|| .
T Consensus       169 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~  247 (265)
T cd06652         169 VTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIF-V  247 (265)
T ss_pred             CCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHh-c
Confidence            358899999999998889999999999999999999999998765554444433322222223356778999999999 4


Q ss_pred             CCCCCCCCCcChHHHhcCCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      +|++||+    +++|++|||++
T Consensus       248 ~p~~Rp~----~~~il~~~~~~  265 (265)
T cd06652         248 EAKLRPS----ADELLRHTFVH  265 (265)
T ss_pred             ChhhCCC----HHHHhcCcccC
Confidence            9999999    99999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=9e-43  Score=336.79  Aligned_cols=262  Identities=21%  Similarity=0.350  Sum_probs=213.8

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.++||+|+||+||+|.+...+...+..||+|.+....  .......+.+|+++++.++|+||+++++++...
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   79 (283)
T cd05090           2 LPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN--NPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE   79 (283)
T ss_pred             CChhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecC
Confidence            456789999999999999999999765555577899999987532  223445678899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCC---------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQP---------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS  223 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~---------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~  223 (457)
                      ...|+||||+.+++|.+++....               ...+++..+..++.||+.||.|||++||+||||||+|||++.
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~  159 (283)
T cd05090          80 QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGE  159 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcC
Confidence            99999999999999998885421               134788899999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.+||+|||+++.........                                                          
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~----------------------------------------------------------  181 (283)
T cd05090         160 QLHVKISDLGLSREIYSADYYR----------------------------------------------------------  181 (283)
T ss_pred             CCcEEeccccccccccCCccee----------------------------------------------------------
Confidence            9999999999986543211000                                                          


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                                ......++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+. ....++....
T Consensus       182 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~  250 (283)
T cd05090         182 ----------VQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVR-KRQLLPCSED  250 (283)
T ss_pred             ----------cccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCcCCCCCC
Confidence                      0012246778999999998889999999999999999998 999998866544444433 3334444556


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++..+.+++.+||..||++||+    +.+|+++
T Consensus       251 ~~~~~~~li~~cl~~~p~~Rp~----~~~i~~~  279 (283)
T cd05090         251 CPPRMYSLMTECWQEGPSRRPR----FKDIHTR  279 (283)
T ss_pred             CCHHHHHHHHHHcccCcccCcC----HHHHHHH
Confidence            8899999999999999999999    8888765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=4.9e-43  Score=338.36  Aligned_cols=262  Identities=23%  Similarity=0.373  Sum_probs=214.4

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +..++|++.+.||+|+||.||+|.+.... ......||+|.+....  .......+.+|+++++.++||||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~   79 (283)
T cd05048           2 IPLSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA--EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTK   79 (283)
T ss_pred             CChHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC--CHHHHHHHHHHHHHHHhcCCcccceEEEEEcC
Confidence            45678999999999999999999876432 2344689999986442  22345567889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPD--------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS  223 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~--------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~  223 (457)
                      .+..|++|||+++++|.+++.....              ..+++..++.++.||+.||.|||++|++|+||||+|||++.
T Consensus        80 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~  159 (283)
T cd05048          80 EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGE  159 (283)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcC
Confidence            9999999999999999998876421              45788999999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.++|+|||+++.........                                                          
T Consensus       160 ~~~~~L~dfg~~~~~~~~~~~~----------------------------------------------------------  181 (283)
T cd05048         160 GLTVKISDFGLSRDIYSADYYR----------------------------------------------------------  181 (283)
T ss_pred             CCcEEECCCcceeecccccccc----------------------------------------------------------
Confidence            9999999999975432111000                                                          


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                                ......+++.|+|||++.+..++.++|||||||++|||++ |..||.+....+....+..+. ..+....
T Consensus       182 ----------~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~-~~~~~~~  250 (283)
T cd05048         182 ----------VQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQ-LLPCPED  250 (283)
T ss_pred             ----------ccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-cCCCccc
Confidence                      0011246889999999998889999999999999999998 999999877766665554433 2333456


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++.++.+|+.+||+.||.+||+    +.+|+++
T Consensus       251 ~~~~~~~l~~~c~~~~p~~Rp~----~~~i~~~  279 (283)
T cd05048         251 CPARVYALMIECWNEIPARRPR----FKDIHTR  279 (283)
T ss_pred             CCHHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            8899999999999999999999    8888765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2.5e-43  Score=340.54  Aligned_cols=255  Identities=24%  Similarity=0.376  Sum_probs=202.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.++||+|+||.||+|.++    .+|..||+|++..... .......+..|+++++.++|+||+++++++.+....|
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~----~~g~~~~~k~~~~~~~-~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   75 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNR----ETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLT   75 (284)
T ss_pred             CceeEEEecccCCeEEEEEEEC----CCCcEEEEEEeecccc-cccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceE
Confidence            4889999999999999999986    4788999999975432 2223345667999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||++ ++|..++... ...+++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++.......
T Consensus        76 lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  153 (284)
T cd07839          76 LVFEYCD-QDLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPV  153 (284)
T ss_pred             EEEecCC-CCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCC
Confidence            9999995 6787766553 3569999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                      .....++.
T Consensus       154 ~~----------------------------------------------------------------------~~~~~~~~  163 (284)
T cd07839         154 RC----------------------------------------------------------------------YSAEVVTL  163 (284)
T ss_pred             CC----------------------------------------------------------------------cCCCcccc
Confidence            00                                                                      00124788


Q ss_pred             CccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCC-CChHHHHHHHHhccc--------------C---C------
Q 012762          323 EYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKG-IDHELTLANVVARAL--------------E---F------  377 (457)
Q Consensus       323 ~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~-~~~~~~~~~~~~~~~--------------~---~------  377 (457)
                      .|+|||++.+.. ++.++|||||||++|+|++|..||.. .+....+..+.....              .   .      
T Consensus       164 ~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (284)
T cd07839         164 WYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPAT  243 (284)
T ss_pred             CCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCc
Confidence            999999987754 78999999999999999999888643 333333332221100              0   0      


Q ss_pred             ----CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          378 ----PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       378 ----~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                          ...+.++.++.++|++||..||.+|||    ++++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~~il~h~~f  284 (284)
T cd07839         244 TSLVNVVPKLNSTGRDLLQNLLVCNPVQRIS----AEEALQHPYF  284 (284)
T ss_pred             chhhhhcccCCHHHHHHHHHHhcCChhhcCC----HHHHhcCCCC
Confidence                011246788999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=5.1e-43  Score=354.31  Aligned_cols=266  Identities=21%  Similarity=0.280  Sum_probs=214.9

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLY  152 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~  152 (457)
                      ..+.+..++|++.++||+|+||+||+|.+.... ...+..||||++....  .......+.+|+++|++++ ||||++++
T Consensus        30 ~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~--~~~~~~~~~~Ei~~l~~l~~HpnIv~l~  107 (400)
T cd05105          30 SRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTA--RSSEKQALMSELKIMTHLGPHLNIVNLL  107 (400)
T ss_pred             CceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCC--ChHHHHHHHHHHHHHHhcCCCCCeeeEE
Confidence            456777889999999999999999999875322 2345679999996532  2234467888999999996 99999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCC---------------------------------------------------
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQP---------------------------------------------------  181 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~---------------------------------------------------  181 (457)
                      +++...+..|||||||++|+|.+++....                                                   
T Consensus       108 ~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (400)
T cd05105         108 GACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQ  187 (400)
T ss_pred             EEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccc
Confidence            99999999999999999999988876431                                                   


Q ss_pred             -------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCC
Q 012762          182 -------------------------------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN  218 (457)
Q Consensus       182 -------------------------------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~N  218 (457)
                                                                 ...+++..+..++.||+.||.|||+.+|+||||||+|
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~N  267 (400)
T cd05105         188 YVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARN  267 (400)
T ss_pred             cchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHh
Confidence                                                       1247888889999999999999999999999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ||++.++.+||+|||+++........                                                      
T Consensus       268 ill~~~~~~kL~DfGla~~~~~~~~~------------------------------------------------------  293 (400)
T cd05105         268 VLLAQGKIVKICDFGLARDIMHDSNY------------------------------------------------------  293 (400)
T ss_pred             EEEeCCCEEEEEeCCcceeccccccc------------------------------------------------------
Confidence            99999999999999997643211000                                                      


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCC
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEF  377 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~  377 (457)
                                    .......++..|+|||++.+..++.++|||||||++|||++ |..||............+......
T Consensus       294 --------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~~  359 (400)
T cd05105         294 --------------VSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYRM  359 (400)
T ss_pred             --------------cccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCCC
Confidence                          00012247788999999999889999999999999999996 999998765544444455555555


Q ss_pred             CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       378 ~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +....++.++.+++.+||+.||++||+    +.+|.+
T Consensus       360 ~~~~~~~~~l~~li~~cl~~dP~~RPt----~~~l~~  392 (400)
T cd05105         360 AKPDHATQEVYDIMVKCWNSEPEKRPS----FLHLSD  392 (400)
T ss_pred             CCCccCCHHHHHHHHHHCccCHhHCcC----HHHHHH
Confidence            555678899999999999999999999    666654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=3.5e-43  Score=348.58  Aligned_cols=265  Identities=18%  Similarity=0.265  Sum_probs=211.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      |.+..++|++.+.||+|+||.||+|++... +..+++.||+|+++...  .......+..|+++++++ +|+||++++++
T Consensus         2 ~~~~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~~~~l~~h~niv~~~~~   79 (337)
T cd05054           2 WEFPRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGA--TASEYKALMTELKILIHIGHHLNVVNLLGA   79 (337)
T ss_pred             cccCHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCC--CHHHHHHHHHHHHHHHhhccCcchhheeee
Confidence            567778999999999999999999976432 22456899999986432  122345667799999999 89999999998


Q ss_pred             EEc-CCcEEEEEeecCCCChHHHHHhCCC---------------------------------------------------
Q 012762          155 LDC-PRWSCLLTEFCPGGDLHVLRQRQPD---------------------------------------------------  182 (457)
Q Consensus       155 ~~~-~~~~~lV~E~~~~~sL~~~~~~~~~---------------------------------------------------  182 (457)
                      +.. +..++++|||+.+++|..++.....                                                   
T Consensus        80 ~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (337)
T cd05054          80 CTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEED  159 (337)
T ss_pred             EecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccc
Confidence            764 4578999999999999988864321                                                   


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCC
Q 012762          183 --------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP  254 (457)
Q Consensus       183 --------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~  254 (457)
                              ..+++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||++.........          
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~----------  229 (337)
T cd05054         160 EEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY----------  229 (337)
T ss_pred             hhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcch----------
Confidence                    26789999999999999999999999999999999999999999999999998654211100          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC
Q 012762          255 TGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG  334 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~  334 (457)
                                                                                .......++..|+|||++.+..
T Consensus       230 ----------------------------------------------------------~~~~~~~~~~~y~aPE~~~~~~  251 (337)
T cd05054         230 ----------------------------------------------------------VRKGDARLPLKWMAPESIFDKV  251 (337)
T ss_pred             ----------------------------------------------------------hhccCCCCCccccCcHHhcCCC
Confidence                                                                      0011234677899999999999


Q ss_pred             CCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHh
Q 012762          335 HGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       335 ~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll  413 (457)
                      ++.++|||||||++|||++ |..||.+....+.+...+...........++.++.+++.+||+.+|++||+    +.+|+
T Consensus       252 ~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs----~~ell  327 (337)
T cd05054         252 YTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPT----FSELV  327 (337)
T ss_pred             CCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcC----HHHHH
Confidence            9999999999999999997 999998755444444444444343334457889999999999999999999    99988


Q ss_pred             cC
Q 012762          414 RH  415 (457)
Q Consensus       414 ~h  415 (457)
                      +|
T Consensus       328 ~~  329 (337)
T cd05054         328 EI  329 (337)
T ss_pred             HH
Confidence            75

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-44  Score=369.31  Aligned_cols=261  Identities=28%  Similarity=0.381  Sum_probs=211.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEE-E
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATL-D  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~-~  156 (457)
                      +...+++|.+.|.+|||+.||+|.+..    .|..||+|++-..   .+.....+++|+++|++|. |+|||.+++.. .
T Consensus        34 Vg~~~v~V~~vLAEGGFa~VYla~~~~----~~~~~AlKrm~~~---de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~  106 (738)
T KOG1989|consen   34 VGSHRVTVEKVLAEGGFAQVYLAQDVK----GGKKYALKRMYVN---DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAI  106 (738)
T ss_pred             ECCEEEEEEEEEccCCcEEEEEEEecC----CCceeeeeeeecC---CHHHHHHHHHHHHHHHHhcCCCceeeEeccccc
Confidence            344568899999999999999999862    4489999998543   4456677889999999995 99999999932 1


Q ss_pred             c---C---CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCCCEE
Q 012762          157 C---P---RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       157 ~---~---~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~~vk  228 (457)
                      .   +   -.++|+||||.||.|-+++...-..+|++.+++.|+.|+|+||.+||.++  |||||||-|||||+.+|+.|
T Consensus       107 ~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~K  186 (738)
T KOG1989|consen  107 NRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYK  186 (738)
T ss_pred             cccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEE
Confidence            1   1   24689999999999999988665577999999999999999999999998  99999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |||||.+...-.......                                                        +..   
T Consensus       187 LCDFGSatt~~~~~~~~~--------------------------------------------------------e~~---  207 (738)
T KOG1989|consen  187 LCDFGSATTKILSPTSAQ--------------------------------------------------------EVN---  207 (738)
T ss_pred             eCcccccccccCCCccHH--------------------------------------------------------HHH---
Confidence            999998643221110000                                                        000   


Q ss_pred             cCCccccccccCCCCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                        .-.......-|+.|+|||++.   +.+.+.|+|||+|||+||-|++...||++..    ...|+.+.+.+|..+..++
T Consensus       208 --~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg----~laIlng~Y~~P~~p~ys~  281 (738)
T KOG1989|consen  208 --YVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG----KLAILNGNYSFPPFPNYSD  281 (738)
T ss_pred             --HHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc----ceeEEeccccCCCCccHHH
Confidence              001111224699999999984   6778999999999999999999999998753    3467789999999989999


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+++||+.||+.||++||+    +.|++.+
T Consensus       282 ~l~~LI~~mL~~nP~~RPn----I~Qv~~~  307 (738)
T KOG1989|consen  282 RLKDLIRTMLQPNPDERPN----IYQVLEE  307 (738)
T ss_pred             HHHHHHHHHhccCcccCCC----HHHHHHH
Confidence            9999999999999999999    7777754

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=9.1e-43  Score=336.31  Aligned_cols=261  Identities=26%  Similarity=0.350  Sum_probs=207.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHH-HHHcCCCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~i-l~~l~H~nIv~l~~~~~~~~~  160 (457)
                      ++|++.+.||+|+||.||+|.++    .+|+.||+|+++.....  .....+..|+++ ++.++|+||+++++++..++.
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~   74 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHV----PTGTIMAVKRIRATVNS--QEQKRLLMDLDISMRSVDCPYTVTFYGALFREGD   74 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEc----CCCcEEEEEEEecCCCc--HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCc
Confidence            47999999999999999999987    47899999998764221  223344456665 566799999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .|+||||++ ++|..++...  ....+++..++.++.||+.||.|||++ +++||||||+|||++.++.+||+|||++..
T Consensus        75 ~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~  153 (283)
T cd06617          75 VWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGY  153 (283)
T ss_pred             EEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            999999994 7887776542  235689999999999999999999997 999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                       ...
T Consensus       154 ~~~~~~-----------------------------------------------------------------------~~~  162 (283)
T cd06617         154 LVDSVA-----------------------------------------------------------------------KTI  162 (283)
T ss_pred             cccccc-----------------------------------------------------------------------ccc
Confidence            321100                                                                       001


Q ss_pred             ccCCCCccCchhhcC----CCCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          318 FVGTHEYLAPEIISG----EGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~----~~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ..|+..|+|||++.+    ..++.++|+|||||++|+|++|+.||.... ..+.+..+............++.++.++|.
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  242 (283)
T cd06617         163 DAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVN  242 (283)
T ss_pred             ccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHH
Confidence            248889999999865    446889999999999999999999997543 223344433332221112347889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      +||..||++||+    +.+++.||||....+.
T Consensus       243 ~~l~~~p~~Rp~----~~~il~~~~~~~~~~~  270 (283)
T cd06617         243 KCLKKNYKERPN----YPELLQHPFFELHLSK  270 (283)
T ss_pred             HHccCChhhCcC----HHHHhcCchhhhcccc
Confidence            999999999999    9999999999987665

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.7e-42  Score=331.22  Aligned_cols=255  Identities=22%  Similarity=0.330  Sum_probs=212.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+...+|.+.++||+|+||.||+|.++    ..++.||+|++....    .....+.+|+++++.++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~----~~~~~~~~K~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   73 (263)
T cd05052           2 EMERTDITMKHKLGGGQYGEVYEGVWK----KYSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTR   73 (263)
T ss_pred             CCchHHeEEeeecCCcccceEEEEEEe----cCCceEEEEEecCCc----hHHHHHHHHHHHHHhCCCCChhheEEEEcC
Confidence            456678999999999999999999987    368899999986532    234567789999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++..++||||+++++|.+++.......+++..++.++.|++.||.|||++|++||||||+|||++.++.+||+|||++..
T Consensus        74 ~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~  153 (263)
T cd05052          74 EPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL  153 (263)
T ss_pred             CCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccc
Confidence            99999999999999999998776556789999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                     ...
T Consensus       154 ~~~~~~~~---------------------------------------------------------------------~~~  164 (263)
T cd05052         154 MTGDTYTA---------------------------------------------------------------------HAG  164 (263)
T ss_pred             cccceeec---------------------------------------------------------------------cCC
Confidence            43211100                                                                     001


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+. ..+.......++.++.+++.+||.
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~  243 (263)
T cd05052         165 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE-KGYRMERPEGCPPKVYELMRACWQ  243 (263)
T ss_pred             CCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHcc
Confidence            124678999999999999999999999999999998 999998876655544443 334444455688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +.++++
T Consensus       244 ~~p~~Rp~----~~~l~~  257 (263)
T cd05052         244 WNPSDRPS----FAEIHQ  257 (263)
T ss_pred             CCcccCCC----HHHHHH
Confidence            99999999    777764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.9e-42  Score=335.74  Aligned_cols=271  Identities=38%  Similarity=0.713  Sum_probs=216.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-hHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      +|++.+.||.|+||.||+|++... ..+|..||+|++........ .....+..|+++|+++ +|+||+++++++..+..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~-~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSG-HDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTK   79 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccC-CCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCe
Confidence            488999999999999999986522 23688999999976543222 2345677899999999 69999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++...  ..+++..+..++.||+.||.|||+.|++||||||+|||++.++.++|+|||++.....
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          80 LHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence            99999999999999888764  5689999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                     ......|
T Consensus       158 ~~~~---------------------------------------------------------------------~~~~~~~  168 (290)
T cd05613         158 DEVE---------------------------------------------------------------------RAYSFCG  168 (290)
T ss_pred             cccc---------------------------------------------------------------------ccccccC
Confidence            1000                                                                     0012358


Q ss_pred             CCCccCchhhcCC--CCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          321 THEYLAPEIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       321 t~~y~aPE~l~~~--~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      +..|+|||.+.+.  .++.++||||||+++|+|++|..||.....    ......+......  ....++..+.+++.+|
T Consensus       169 ~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~  246 (290)
T cd05613         169 TIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPP--YPQEMSALAKDIIQRL  246 (290)
T ss_pred             CcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCC--CCccCCHHHHHHHHHH
Confidence            8999999999753  467899999999999999999999974322    2222222222222  2344788899999999


Q ss_pred             hhhCCCCCCCCC-cChHHHhcCCCCCCCCchhhh
Q 012762          395 LVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       395 L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      |..||++|++.. ..+++++.||||+.++|..+.
T Consensus       247 l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  280 (290)
T cd05613         247 LMKDPKKRLGCGPSDADEIKKHPFFQKINWDDLA  280 (290)
T ss_pred             hcCCHHHhcCCCCCCHHHHHcCcccccCCHHHHh
Confidence            999999998321 239999999999999997763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.5e-42  Score=329.50  Aligned_cols=255  Identities=22%  Similarity=0.388  Sum_probs=215.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||+|+||.||+|.+.    .++..+|+|++...... ......+..|+++|++++|+||+++++.+..++..+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   75 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRK----ADQKLVIIKQIPVEQMT-KDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALM   75 (256)
T ss_pred             CceEEEEecccCceEEEEEEEc----CCCcEEEEEEEeccccc-cHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEE
Confidence            5899999999999999999876    37889999999765432 234567888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCCCcCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~s~~~~~~  241 (457)
                      +||||+++++|.+++.......+++..+..++.|++.+|.|||++||+|+||||+||+++.+ +.++|+|||++......
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK  155 (256)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC
Confidence            99999999999999877555668999999999999999999999999999999999999865 46899999997644311


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                       .....|+
T Consensus       156 ~~-----------------------------------------------------------------------~~~~~~~  164 (256)
T cd08220         156 SK-----------------------------------------------------------------------AYTVVGT  164 (256)
T ss_pred             cc-----------------------------------------------------------------------ccccccC
Confidence            00                                                                       0023588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      ..|+|||.+.+..++.++||||||+++|+|++|..||...+.......+...... +....++.++.+++.+||..||++
T Consensus       165 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~  243 (256)
T cd08220         165 PCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFA-PISDRYSPDLRQLILSMLNLDPSK  243 (256)
T ss_pred             CcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCC-CCCCCcCHHHHHHHHHHccCChhh
Confidence            8999999999888899999999999999999999999887666555555543322 233457889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCC
Q 012762          402 RMGSKMGATAIKRHQFF  418 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f  418 (457)
                      ||+    +.|+++||||
T Consensus       244 Rpt----~~~ll~~p~~  256 (256)
T cd08220         244 RPQ----LSQIMAQPIC  256 (256)
T ss_pred             CCC----HHHHhhCCCC
Confidence            999    9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.4e-42  Score=329.76  Aligned_cols=253  Identities=26%  Similarity=0.418  Sum_probs=212.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|.+.+.||+|+||.||+|.++.    ++..||+|.+.....     ...+.+|+++++.++|+||+++++++......
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~----~~~~~~~k~~~~~~~-----~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~   73 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKE----TGQVVAIKVVPVEED-----LQEIIKEISILKQCDSPYIVKYYGSYFKNTDL   73 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcC----CCcEEEEEEeecHHH-----HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcE
Confidence            579999999999999999999863    678999999875422     56788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |++|||+.+++|.+++... ...+++..++.++.|++.||.|||+.||+|+||+|+||+++.++.++|+|||++......
T Consensus        74 ~l~~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~  152 (256)
T cd06612          74 WIVMEYCGAGSVSDIMKIT-NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT  152 (256)
T ss_pred             EEEEecCCCCcHHHHHHhC-ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccC
Confidence            9999999999999988654 257899999999999999999999999999999999999999999999999997644321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       153 ~~----------------------------------------------------------------------~~~~~~~~  162 (256)
T cd06612         153 MA----------------------------------------------------------------------KRNTVIGT  162 (256)
T ss_pred             cc----------------------------------------------------------------------ccccccCC
Confidence            10                                                                      00123478


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      ..|+|||++.+..++.++|||||||++|+|++|+.||...........+..... .+.....++.++.+++.+||+.||+
T Consensus       163 ~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~  242 (256)
T cd06612         163 PFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPE  242 (256)
T ss_pred             ccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChh
Confidence            899999999998899999999999999999999999987655443333222111 1122234678899999999999999


Q ss_pred             CCCCCCcChHHHhcCCCC
Q 012762          401 RRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f  418 (457)
                      +||+    +.|++.||||
T Consensus       243 ~Rps----~~~il~~~~~  256 (256)
T cd06612         243 ERPS----AIQLLQHPFI  256 (256)
T ss_pred             hCcC----HHHHhcCCCC
Confidence            9999    9999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2.2e-42  Score=328.63  Aligned_cols=252  Identities=23%  Similarity=0.396  Sum_probs=212.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.++||.|+||.||++.++.    ++..||+|.++....  ......+..|+++++.++|+||+++++++..++.+|
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~----~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   74 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVN----SDQKYAMKEIRLPKS--SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLY   74 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcC----CCceEEEEEEEcCcc--hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEE
Confidence            58999999999999999998763    788999999865322  234566778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++.......+++..++.++.||+.||.|||++||+|+||||+||+++.++.++|+|||++.......
T Consensus        75 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  154 (255)
T cd08219          75 IVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPG  154 (255)
T ss_pred             EEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecccc
Confidence            99999999999988876555678999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       155 ~----------------------------------------------------------------------~~~~~~~~~  164 (255)
T cd08219         155 A----------------------------------------------------------------------YACTYVGTP  164 (255)
T ss_pred             c----------------------------------------------------------------------ccccccCCc
Confidence            0                                                                      001235889


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||++.+..++.++|+||||+++|+|++|..||...+.......+...... +....++..+.++|.+||..||++|
T Consensus       165 ~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~P~~R  243 (255)
T cd08219         165 YYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYK-PLPSHYSYELRSLIKQMFKRNPRSR  243 (255)
T ss_pred             cccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCC-CCCcccCHHHHHHHHHHHhCCcccC
Confidence            999999999988999999999999999999999999887666555555444332 2334578899999999999999999


Q ss_pred             CCCCcChHHHhcC
Q 012762          403 MGSKMGATAIKRH  415 (457)
Q Consensus       403 ps~~~~~~~ll~h  415 (457)
                      |+    +.+|+.-
T Consensus       244 p~----~~~il~~  252 (255)
T cd08219         244 PS----ATTILSR  252 (255)
T ss_pred             CC----HHHHhhc
Confidence            99    9998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1.3e-42  Score=341.01  Aligned_cols=253  Identities=23%  Similarity=0.331  Sum_probs=190.8

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE--cCCcEEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD--CPRWSCLL  164 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~--~~~~~~lV  164 (457)
                      ..+||+|+||+||+|+++.  ...+..||+|.+....     ....+.+|+++|+.++||||+++++++.  .+...|+|
T Consensus         6 g~~lG~G~~g~Vy~~~~~~--~~~~~~~a~k~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv   78 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKD--GKDEKEYALKQIEGTG-----ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLL   78 (317)
T ss_pred             ceEeccCCCeeEEEEEecC--CCccceEEEEEecCCC-----CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEE
Confidence            3689999999999998653  2356789999986532     2234667999999999999999999885  35678999


Q ss_pred             EeecCCCChHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE----ccCCCEEEeccC
Q 012762          165 TEFCPGGDLHVLRQRQ-------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV----RSDGHIMLTDFD  233 (457)
Q Consensus       165 ~E~~~~~sL~~~~~~~-------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll----~~~~~vkl~DFG  233 (457)
                      |||+ +++|..++...       ....+++..++.++.||+.||.|||+.||+||||||+|||+    +.++.+||+|||
T Consensus        79 ~e~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07867          79 FDYA-EHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             Eeee-CCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeecc
Confidence            9999 56777666432       12358899999999999999999999999999999999999    456789999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.........                                                                   .
T Consensus       158 ~a~~~~~~~~~~-------------------------------------------------------------------~  170 (317)
T cd07867         158 FARLFNSPLKPL-------------------------------------------------------------------A  170 (317)
T ss_pred             ceeccCCCcccc-------------------------------------------------------------------c
Confidence            986543211000                                                                   0


Q ss_pred             ccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChH---------HHHHHHHhccc--------
Q 012762          314 RSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------LTLANVVARAL--------  375 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------~~~~~~~~~~~--------  375 (457)
                      ......||+.|+|||++.+. .++.++|||||||++|||++|++||......         ..+..+.....        
T Consensus       171 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (317)
T cd07867         171 DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWE  250 (317)
T ss_pred             ccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhh
Confidence            01124689999999999875 4799999999999999999999999754321         11111111000        


Q ss_pred             ------CC----------------------CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          376 ------EF----------------------PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       376 ------~~----------------------~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                            .+                      ......+..+.+||.+||+.||.+|||    +.|+|+||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t----~~e~l~hp~f  317 (317)
T cd07867         251 DIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRIT----SEQALQDPYF  317 (317)
T ss_pred             hhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccC----HHHHhcCCCC
Confidence                  00                      000123456889999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=4.8e-43  Score=338.78  Aligned_cols=256  Identities=29%  Similarity=0.403  Sum_probs=208.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||+|+||.||+|.++    .+++.||+|++.+..... .....+..|+++++.++|+||+++++++..++..
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~----~~~~~~~iK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   75 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHK----ETGQIVAIKKFLESEDDK-MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRL   75 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEEC----CCCCEEEEEeHhhccCcc-hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeE
Confidence            46999999999999999999986    368899999986643322 3445677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|..+....  ..+++..++.++.||+.||.|||+.||+|+||+|+||+++.++.++|+|||++......
T Consensus        76 ~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07846          76 YLVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  153 (286)
T ss_pred             EEEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCC
Confidence            9999999999998776553  45899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......|+
T Consensus       154 ~~----------------------------------------------------------------------~~~~~~~~  163 (286)
T cd07846         154 GE----------------------------------------------------------------------VYTDYVAT  163 (286)
T ss_pred             cc----------------------------------------------------------------------ccCcccce
Confidence            10                                                                      00123578


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCCC--
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFPK--  379 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~~--  379 (457)
                      ..|+|||++.+. .++.++|||||||++|||++|.+||......+....+.....                   ..+.  
T Consensus       164 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (286)
T cd07846         164 RWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVK  243 (286)
T ss_pred             eeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccccccc
Confidence            899999998764 478899999999999999999999987665443333322110                   1111  


Q ss_pred             --------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 --------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 --------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                              .+.++..+.+|+.+||..||++||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~----~~~il~~~~~  286 (286)
T cd07846         244 EIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPS----SSQLLHHEFF  286 (286)
T ss_pred             CcchHHHhCCCcCHHHHHHHHHHhcCCcccchh----HHHHhcCCCC
Confidence                    1346788999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-42  Score=329.69  Aligned_cols=255  Identities=27%  Similarity=0.429  Sum_probs=212.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||.|+||.||+|.+..    ++..+|+|++.....   .....+..|+++++.++||||+++++++...+.
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~----~~~~~~ik~~~~~~~---~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   74 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIA----TGELVAIKVIKLEPG---DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDK   74 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecC----CCCEEEEEEEEcCch---hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCE
Confidence            3689999999999999999998763    677899999975432   245677889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|++|||+.+++|..++... ...+++..+..++.|++.||.|||++||+|+||||+||+++.++.++|+|||++.....
T Consensus        75 ~~l~~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  153 (262)
T cd06613          75 LWIVMEYCGGGSLQDIYQVT-RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTA  153 (262)
T ss_pred             EEEEEeCCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhh
Confidence            99999999999999887664 25689999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       154 ~~~----------------------------------------------------------------------~~~~~~~  163 (262)
T cd06613         154 TIA----------------------------------------------------------------------KRKSFIG  163 (262)
T ss_pred             hhh----------------------------------------------------------------------ccccccC
Confidence            100                                                                      0112358


Q ss_pred             CCCccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---CCCCCChHHHHHHHHH
Q 012762          321 THEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---KEPSVPGPAKDLIAQL  394 (457)
Q Consensus       321 t~~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~  394 (457)
                      +..|+|||.+.+.   .++.++|||||||++|+|++|..||...........+....+..+   ....++.++.+++.+|
T Consensus       164 ~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  243 (262)
T cd06613         164 TPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKC  243 (262)
T ss_pred             CccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHH
Confidence            8899999999877   788999999999999999999999988765554444433322221   1234567899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQF  417 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~  417 (457)
                      |..||.+||+    +.+|+.|+|
T Consensus       244 l~~~p~~Rpt----~~~il~~~~  262 (262)
T cd06613         244 LTKDPKKRPT----ATKLLQHPF  262 (262)
T ss_pred             cCCChhhCCC----HHHHhcCCC
Confidence            9999999999    999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-42  Score=332.60  Aligned_cols=256  Identities=27%  Similarity=0.438  Sum_probs=209.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      .++|++.+.||.|+||.||+|.++    .+++.||+|++.....    ....+..|+++++++ +|+||+++++++....
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~----~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~   76 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHK----KTGQLVAIKIMDIIED----EEEEIKEEYNILRKYSNHPNIATFYGAFIKKN   76 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEEC----CCCcEEEEEEEecCch----hHHHHHHHHHHHHHhcCCCChheEEEEEEecC
Confidence            368999999999999999999986    3678999999875432    345678899999998 7999999999997644


Q ss_pred             ------cEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          160 ------WSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       160 ------~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                            .+|+||||+++++|.+++....  ...+++..++.++.|++.||.|||+.|++|+||+|+||+++.++.++|+|
T Consensus        77 ~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d  156 (275)
T cd06608          77 PPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVD  156 (275)
T ss_pred             CCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECC
Confidence                  4899999999999998887543  46799999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++........                                                                    
T Consensus       157 ~~~~~~~~~~~~--------------------------------------------------------------------  168 (275)
T cd06608         157 FGVSAQLDSTLG--------------------------------------------------------------------  168 (275)
T ss_pred             Cccceecccchh--------------------------------------------------------------------
Confidence            998754321100                                                                    


Q ss_pred             ccccccccCCCCccCchhhcCC-----CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCCh
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPG  385 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-----~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~  385 (457)
                        ......|+..|+|||++...     .++.++|||||||++|+|++|..||...........+...... ......++.
T Consensus       169 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (275)
T cd06608         169 --RRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSK  246 (275)
T ss_pred             --hhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCH
Confidence              00123589999999998643     3678999999999999999999999876555555554443221 122233678


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ++.+||.+||..||++||+    +.++++|||+
T Consensus       247 ~~~~li~~~l~~dp~~Rpt----~~~ll~~~~~  275 (275)
T cd06608         247 KFNDFISECLIKNYEQRPF----MEELLEHPFI  275 (275)
T ss_pred             HHHHHHHHHhhcChhhCcC----HHHHhcCCCC
Confidence            8999999999999999999    9999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.2e-42  Score=332.70  Aligned_cols=261  Identities=23%  Similarity=0.368  Sum_probs=210.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh---hhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS---RNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~---~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +|+..+.||+|+||.||+|.+.    .+++.||+|++.......   ......+..|+++|++++|+||+++++++...+
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~----~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   76 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDV----KTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDS   76 (268)
T ss_pred             CccccceecCcCceEEEEEEEc----CCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCC
Confidence            4788899999999999999875    478899999997543211   223567888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCCcCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKG  238 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~  238 (457)
                      ..++||||+++++|.+++...  +.+++..+..++.||+.||.|||++|++|+||||+||+++.++ .++|+|||++...
T Consensus        77 ~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~  154 (268)
T cd06630          77 HFNLFVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARL  154 (268)
T ss_pred             eEEEEEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccc
Confidence            999999999999999998764  5789999999999999999999999999999999999998776 5999999997655


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                  .......
T Consensus       155 ~~~~~~~------------------------------------------------------------------~~~~~~~  168 (268)
T cd06630         155 AAKGTGA------------------------------------------------------------------GEFQGQL  168 (268)
T ss_pred             ccccccC------------------------------------------------------------------Ccccccc
Confidence            3211000                                                                  0001123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH---HhcccCCCCCCCCChHHHHHHHHHh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV---VARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      .|+..|+|||++.+..++.++|||||||++|+|++|..||...........+   ............++.++.+++.+||
T Consensus       169 ~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  248 (268)
T cd06630         169 LGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCL  248 (268)
T ss_pred             ccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHc
Confidence            5899999999998888999999999999999999999999754432222222   1122222223357788999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      ..||++||+    +.++++||||+
T Consensus       249 ~~~p~~R~~----~~~ll~~~~~~  268 (268)
T cd06630         249 ELQPEDRPP----SRELLKHPVFR  268 (268)
T ss_pred             CCCcccCcC----HHHHhcCcccC
Confidence            999999999    99999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.9e-43  Score=337.46  Aligned_cols=258  Identities=29%  Similarity=0.398  Sum_probs=212.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++++.||+|+||+||+|.+.    .++..||+|++....  .......+.+|+++++.++|+||+++++++...
T Consensus         2 l~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   75 (284)
T cd06620           2 LRNEDLETISDLGAGNGGSVSKVKHI----PTGTVMAKKVVHIGA--KSSVRKQILRELQIMHECRSPYIVSFYGAFLNE   75 (284)
T ss_pred             ccHHHHHHHHHcCCCCCeEEEEEEEc----CCCcEEEEEEEEecC--cchHHHHHHHHHHHHHHcCCCCcceEeeeEecC
Confidence            34578999999999999999999876    378899999986542  223456788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +.+|+||||+++++|..++...  +.+++..+..++.|++.||.|||+ .+++||||||+||+++.++.++|+|||++..
T Consensus        76 ~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~  153 (284)
T cd06620          76 NNICMCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGE  153 (284)
T ss_pred             CEEEEEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccc
Confidence            9999999999999999888764  568999999999999999999997 5999999999999999999999999998643


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .....                                                                        ...
T Consensus       154 ~~~~~------------------------------------------------------------------------~~~  161 (284)
T cd06620         154 LINSI------------------------------------------------------------------------ADT  161 (284)
T ss_pred             hhhhc------------------------------------------------------------------------cCc
Confidence            31100                                                                        002


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-----------HHHHHHHhcccCCCCCCCCChH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-----------LTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      ..|+..|+|||++.+..++.++|||||||++|+|++|+.||......           .....+............++.+
T Consensus       162 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (284)
T cd06620         162 FVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPED  241 (284)
T ss_pred             cccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHH
Confidence            35899999999998888999999999999999999999999865432           1222222221111111236788


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.+|+.+||..||++||+    +.++++|+||..
T Consensus       242 ~~~li~~~l~~dp~~Rpt----~~e~~~~~~~~~  271 (284)
T cd06620         242 LRDFVDACLLKDPTERPT----PQQLCAMPPFIQ  271 (284)
T ss_pred             HHHHHHHHhcCCcccCcC----HHHHhcCccccc
Confidence            999999999999999999    999999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=9.8e-43  Score=336.41  Aligned_cols=256  Identities=30%  Similarity=0.415  Sum_probs=208.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++++.||.|+||.||+|.++    .++..||||++..... .......+..|++++++++||||+++++++..++..|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   75 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNK----LTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLY   75 (284)
T ss_pred             CceeeeeecCCCceEEEEEEEC----CCCCEEEEEEcccccc-ccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEE
Confidence            4889999999999999999876    3788999999865432 2223456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+ .++|..++.......+++..++.++.||+.||+|||+.|++|+||+|+||+++.++.+||+|||++.......
T Consensus        76 ~v~e~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~  154 (284)
T cd07860          76 LVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  154 (284)
T ss_pred             EEeecc-ccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCc
Confidence            999999 4689888877666779999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                      .....++.
T Consensus       155 ~~----------------------------------------------------------------------~~~~~~~~  164 (284)
T cd07860         155 RT----------------------------------------------------------------------YTHEVVTL  164 (284)
T ss_pred             cc----------------------------------------------------------------------cccccccc
Confidence            00                                                                      00124688


Q ss_pred             CccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------CCC----
Q 012762          323 EYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------FPK----  379 (457)
Q Consensus       323 ~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------~~~----  379 (457)
                      .|+|||++.+.. ++.++|||||||++|||++|+.||.+.+......++......                  ++.    
T Consensus       165 ~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd07860         165 WYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQ  244 (284)
T ss_pred             cccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhccccccc
Confidence            999999987655 588999999999999999999999876655444333321110                  000    


Q ss_pred             -----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 -----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 -----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                           .+.++.+++++|.+||+.||++||+    +.++++||||
T Consensus       245 ~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~~l~~~~f  284 (284)
T cd07860         245 DFSKVVPPLDEDGRDLLSQMLHYDPNKRIS----AKAALAHPFF  284 (284)
T ss_pred             CHHHHcccCCHHHHHHHHHhcCCCcccCCC----HHHHhcCCCC
Confidence                 1236778899999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.4e-42  Score=328.82  Aligned_cols=251  Identities=22%  Similarity=0.317  Sum_probs=208.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +.++|++.+.||+|+||.||++.++     .+..+|+|.+.....    ....+..|+++|+.++||||+++++++...+
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~-----~~~~~a~K~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05114           2 NPSELTFMKELGSGQFGVVHLGKWR-----AQIKVAIKAINEGAM----SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQK   72 (256)
T ss_pred             CHHHcEEeeEecCCcCceEEEEEec-----cCceEEEEecccCCc----cHHHHHHHHHHHHHCCCCCceeEEEEEccCC
Confidence            4568999999999999999999875     455799998864432    2345777999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++.... ..+++..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||+++...
T Consensus        73 ~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~  151 (256)
T cd05114          73 PLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVL  151 (256)
T ss_pred             CEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccC
Confidence            9999999999999998887542 468999999999999999999999999999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ......                                                                     .....
T Consensus       152 ~~~~~~---------------------------------------------------------------------~~~~~  162 (256)
T cd05114         152 DDEYTS---------------------------------------------------------------------SSGAK  162 (256)
T ss_pred             CCceec---------------------------------------------------------------------cCCCC
Confidence            111000                                                                     00113


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++||||||+++|||++ |+.||...........+.... ........+..+.+++.+||..|
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~li~~c~~~~  241 (256)
T cd05114         163 FPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGF-RLYRPKLASMTVYEVMYSCWHEK  241 (256)
T ss_pred             CchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHccCC
Confidence            5678999999998889999999999999999999 999998877766666665443 22233446788999999999999


Q ss_pred             CCCCCCCCcChHHHhc
Q 012762          399 PTRRMGSKMGATAIKR  414 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~  414 (457)
                      |++||+    +++|++
T Consensus       242 p~~Rps----~~~l~~  253 (256)
T cd05114         242 PEGRPT----FAELLR  253 (256)
T ss_pred             cccCcC----HHHHHH
Confidence            999999    888875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=3.4e-42  Score=334.09  Aligned_cols=257  Identities=27%  Similarity=0.420  Sum_probs=208.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP-  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~-  158 (457)
                      .++|.+.+.||+|+||.||+|.++    .+++.+|+|++....    .....+..|+.+++++ +|+||+++++++... 
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~----~~~~~~aik~~~~~~----~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~   92 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNK----KDGSLAAVKILDPIS----DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKAD   92 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEEC----CCCCEEEEEEecccc----cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEecc
Confidence            468999999999999999999876    478899999986532    2234566789999998 899999999998653 


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                          +..|+||||+++++|.++++..  ....+++..++.++.|++.||.|||+.||+|+||||+||+++.++.+||+||
T Consensus        93 ~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~df  172 (291)
T cd06639          93 KLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDF  172 (291)
T ss_pred             ccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeec
Confidence                3589999999999999887642  2356899999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++........                                                                     
T Consensus       173 g~~~~~~~~~~---------------------------------------------------------------------  183 (291)
T cd06639         173 GVSAQLTSTRL---------------------------------------------------------------------  183 (291)
T ss_pred             ccchhcccccc---------------------------------------------------------------------
Confidence            98754321110                                                                     


Q ss_pred             cccccccCCCCccCchhhcCCC-----CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEG-----HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~-----~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  386 (457)
                       ......|+..|+|||++....     ++.++|||||||++|||++|+.||........+..+..... .......++..
T Consensus       184 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T cd06639         184 -RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRS  262 (291)
T ss_pred             -cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHH
Confidence             001225888999999986542     67899999999999999999999988765555554433321 12223346778


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      +.++|.+||..||++||+    +.+|++||||+
T Consensus       263 l~~li~~~l~~~p~~Rps----~~~il~~~~~~  291 (291)
T cd06639         263 FNHFISQCLIKDFEARPS----VTHLLEHPFIK  291 (291)
T ss_pred             HHHHHHHHhhcChhhCcC----HHHHhcCcccC
Confidence            999999999999999999    99999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=2.2e-42  Score=333.08  Aligned_cols=264  Identities=17%  Similarity=0.231  Sum_probs=212.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      |.+..++|++.++||+|+||+||+|.++.. ....+..||+|++....  .......+.+|+.+++.++|+||+++++++
T Consensus         1 ~~~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~   78 (277)
T cd05062           1 WEVAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLGVV   78 (277)
T ss_pred             CcccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEE
Confidence            345667899999999999999999987532 12356789999986432  122345677899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP--------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~--------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~v  227 (457)
                      ..+...++||||+.+++|.+++....        ...+++..+..++.|++.||.|||+.|++|+||||+||+++.++.+
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~  158 (277)
T cd05062          79 SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  158 (277)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCE
Confidence            99999999999999999999886532        1235778889999999999999999999999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      +|+|||++...........                                                             
T Consensus       159 ~l~dfg~~~~~~~~~~~~~-------------------------------------------------------------  177 (277)
T cd05062         159 KIGDFGMTRDIYETDYYRK-------------------------------------------------------------  177 (277)
T ss_pred             EECCCCCccccCCcceeec-------------------------------------------------------------
Confidence            9999999764432111000                                                             


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                             .....++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+...... +....++..
T Consensus       178 -------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  249 (277)
T cd05062         178 -------GGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLL-DKPDNCPDM  249 (277)
T ss_pred             -------CCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC-CCCCCCCHH
Confidence                   001136788999999998889999999999999999998 79999887776666655544332 223457889


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.+++.+||+.||++||+    +.+++++
T Consensus       250 ~~~li~~~l~~~p~~Rps----~~e~l~~  274 (277)
T cd05062         250 LFELMRMCWQYNPKMRPS----FLEIISS  274 (277)
T ss_pred             HHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            999999999999999999    8888764

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=3e-42  Score=333.99  Aligned_cols=269  Identities=39%  Similarity=0.714  Sum_probs=216.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      +|++.+.||+|+||.||+|++... ..++..||+|++++..... ......+..|++++.++ +|+||+++++.+..+..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~   79 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGG-HDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTK   79 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEecc-ccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCE
Confidence            488999999999999999986532 2367889999997654322 22345677899999999 69999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+.+++|..++...  ..+++..++.++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++.....
T Consensus        80 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  157 (288)
T cd05583          80 LHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             EEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccc
Confidence            99999999999998887654  5689999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                     .......|
T Consensus       158 ~~~---------------------------------------------------------------------~~~~~~~~  168 (288)
T cd05583         158 EEE---------------------------------------------------------------------ERAYSFCG  168 (288)
T ss_pred             ccc---------------------------------------------------------------------cccccccC
Confidence            100                                                                     00112358


Q ss_pred             CCCccCchhhcCCC--CCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          321 THEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       321 t~~y~aPE~l~~~~--~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      +..|+|||.+.+..  ++.++||||||+++|||++|..||.....    ......+.....  +....++.++.++|.+|
T Consensus       169 ~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~  246 (288)
T cd05583         169 TIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKP--PFPKTMSAEARDFIQKL  246 (288)
T ss_pred             CccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCC--CCCcccCHHHHHHHHHH
Confidence            89999999997765  78899999999999999999999964322    222333333322  33345788999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      |+.||++||++. .+.++|+||||+.++|+.+
T Consensus       247 l~~~p~~R~t~~-~~~~~l~~~~~~~~~~~~~  277 (288)
T cd05583         247 LEKDPKKRLGAN-GADEIKNHPFFQGIDWDDL  277 (288)
T ss_pred             hcCCHhhccCcc-hHHHHhcCcccccCCHHHH
Confidence            999999999833 3678899999999999876

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-42  Score=335.30  Aligned_cols=257  Identities=24%  Similarity=0.388  Sum_probs=203.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|++.+.||+|+||+||+|.++    .+++.||+|.+.....  ......+.+|++++++++|+||+++++++..++
T Consensus         3 ~~~~y~~~~~lg~g~~~~vy~~~~~----~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   76 (291)
T cd07844           3 KLETYKKLDKLGEGSYATVYKGRSK----LTGQLVALKEIRLEHE--EGAPFTAIREASLLKDLKHANIVTLHDIIHTKK   76 (291)
T ss_pred             CccceeEEEEEeecCCeEEEEEEEc----CCCcEEEEEEEecccc--cCCchhHHHHHHHHhhCCCcceeeEEEEEecCC
Confidence            3578999999999999999999876    3678999999865421  122344567999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+. ++|..++.... ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||+++...
T Consensus        77 ~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  154 (291)
T cd07844          77 TLTLVFEYLD-TDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKS  154 (291)
T ss_pred             eEEEEEecCC-CCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccC
Confidence            9999999996 58988887653 478999999999999999999999999999999999999999999999999875321


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       155 ~~~~~----------------------------------------------------------------------~~~~~  164 (291)
T cd07844         155 VPSKT----------------------------------------------------------------------YSNEV  164 (291)
T ss_pred             CCCcc----------------------------------------------------------------------ccccc
Confidence            10000                                                                      00113


Q ss_pred             CCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhccc-------------------CCC
Q 012762          320 GTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARAL-------------------EFP  378 (457)
Q Consensus       320 gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~-------------------~~~  378 (457)
                      ++..|+|||++.+. .++.++|||||||++|+|++|+.||.+... .+....+.....                   ..+
T Consensus       165 ~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T cd07844         165 VTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFP  244 (291)
T ss_pred             cccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhcccccccccc
Confidence            68899999998764 588999999999999999999999976552 222222211000                   000


Q ss_pred             ---------CCCCCC--hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ---------KEPSVP--GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ---------~~~~~~--~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                               ....++  .++.+++.+||..||++||+    +.+++.||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps----~~e~l~~~~f  291 (291)
T cd07844         245 FYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRIS----AAEAMKHPYF  291 (291)
T ss_pred             ccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccC----HHHHhcCCCC
Confidence                     001233  67889999999999999999    9999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.9e-43  Score=337.58  Aligned_cols=257  Identities=27%  Similarity=0.394  Sum_probs=209.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|.+.    .++..||+|.+....  .......+.+|+++|++++|+||+++++++..++..
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~~~a~k~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHR----PTGVTMAMKEIRLEL--DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAV   74 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEc----CCCcEEEEEEeeccc--CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeE
Confidence            47899999999999999999876    478899999986431  223346778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      |+||||+++++|..++.... ...+++..+..++.||+.||.|||+ .||+|+||||+||+++.++.++|+|||++....
T Consensus        75 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  154 (286)
T cd06622          75 YMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLV  154 (286)
T ss_pred             EEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCccccc
Confidence            99999999999988876531 2478999999999999999999996 599999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                        ....
T Consensus       155 ~~~~------------------------------------------------------------------------~~~~  162 (286)
T cd06622         155 ASLA------------------------------------------------------------------------KTNI  162 (286)
T ss_pred             CCcc------------------------------------------------------------------------ccCC
Confidence            1100                                                                        0124


Q ss_pred             CCCCccCchhhcCCC------CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH---HHhcccCCCCCCCCChHHHHH
Q 012762          320 GTHEYLAPEIISGEG------HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN---VVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       320 gt~~y~aPE~l~~~~------~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l  390 (457)
                      |+..|+|||++.+..      ++.++|||||||++|+|++|..||...........   +.... .......++.++.++
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  241 (286)
T cd06622         163 GCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGD-PPTLPSGYSDDAQDF  241 (286)
T ss_pred             CccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcC-CCCCCcccCHHHHHH
Confidence            788999999986543      47899999999999999999999976544333322   22221 122233488999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |.+||..||++||+    +.++++||||...
T Consensus       242 i~~~l~~~p~~Rp~----~~~l~~~~~~~~~  268 (286)
T cd06622         242 VAKCLNKIPNRRPT----YAQLLEHPWLVKY  268 (286)
T ss_pred             HHHHcccCcccCCC----HHHHhcChhhhhc
Confidence            99999999999999    9999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.2e-42  Score=334.50  Aligned_cols=279  Identities=36%  Similarity=0.627  Sum_probs=224.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~  160 (457)
                      ++|.+.+.||.|+||.||+|.++    .++..||+|++.+...........+..|++++++++ |+||+++++++..++.
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~   76 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEK----ETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEEN   76 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEc----CCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCce
Confidence            47999999999999999999986    378899999998765555555677888999999998 9999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+|||++++++|.+++...  +.+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.....
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581          77 LYFVLEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             EEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            99999999999999988775  5799999999999999999999999999999999999999999999999999865532


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ........      .     ..+                       ..                .............+.|
T Consensus       155 ~~~~~~~~------~-----~~~-----------------------~~----------------~~~~~~~~~~~~~~~~  184 (280)
T cd05581         155 NSSPESNK------G-----DAT-----------------------NI----------------DSQIEKNRRRFASFVG  184 (280)
T ss_pred             ccccccCC------C-----CCc-----------------------cc----------------cccccccccccccccC
Confidence            21110000      0     000                       00                0000000112234568


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +..|+|||++.+..++.++||||||+++|+|++|+.||........+..+......++.  .++..+.++|.+||..||+
T Consensus       185 ~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~  262 (280)
T cd05581         185 TAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPP--NFPPDAKDLIEKLLVLDPQ  262 (280)
T ss_pred             CccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCCC--ccCHHHHHHHHHHhcCCHh
Confidence            99999999998888999999999999999999999999988766666666655544443  4789999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCC
Q 012762          401 RRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f  418 (457)
                      +||+..+...++++||||
T Consensus       263 ~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         263 DRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             hCCCcccCHHHHhcCCCC
Confidence            999922222999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-44  Score=355.98  Aligned_cols=252  Identities=25%  Similarity=0.417  Sum_probs=210.8

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      -+||+|.||+||.|+++    .+....|||-+..+.   ....+-+..|+.+-+.|+|.|||+++|.+..++++-|.||-
T Consensus       581 vVLGKGTYG~VYA~RD~----~tqvrIaIKEIpekd---sr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEq  653 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDM----DTQVRIAIKEIPEKD---SREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQ  653 (1226)
T ss_pred             EEeecCceeEEEeeccc----cceeEEEeeeccccc---chhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeec
Confidence            47999999999999987    488899999986543   23455677799999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcCCCCCCcc
Q 012762          168 CPGGDLHVLRQRQPDKRF--HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~--~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~~~~~~~~  244 (457)
                      ++||+|..++... .+++  .|..+..+..||++||.|||++.|||||||-+|+||+. .|.+||+|||-++.+..-.. 
T Consensus       654 VPGGSLSsLLrsk-WGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP-  731 (1226)
T KOG4279|consen  654 VPGGSLSSLLRSK-WGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP-  731 (1226)
T ss_pred             CCCCcHHHHHHhc-cCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCc-
Confidence            9999999998764 5677  88899999999999999999999999999999999984 68999999999876642211 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                                                                                           -+-+|.||..|
T Consensus       732 ---------------------------------------------------------------------~TETFTGTLQY  742 (1226)
T KOG4279|consen  732 ---------------------------------------------------------------------CTETFTGTLQY  742 (1226)
T ss_pred             ---------------------------------------------------------------------cccccccchhh
Confidence                                                                                 12267899999


Q ss_pred             cCchhhcCC--CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh-cccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          325 LAPEIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA-RALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       325 ~aPE~l~~~--~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      ||||++...  +|+.++|||||||++.||.||++||......+..+..+- -....|.+..++.+++.+|.+|+..||.+
T Consensus       743 MAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~  822 (1226)
T KOG4279|consen  743 MAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCD  822 (1226)
T ss_pred             hChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCccc
Confidence            999999765  489999999999999999999999987655443222221 12223334457788999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ||+    +.++|..||++..
T Consensus       823 R~s----A~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  823 RPS----AKDLLQDPFLQHN  838 (1226)
T ss_pred             Ccc----HHHhccCcccccC
Confidence            999    9999999999875

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3e-42  Score=333.02  Aligned_cols=257  Identities=28%  Similarity=0.446  Sum_probs=211.0

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||+|+||.||+|.+.    .+|..||+|++...... ......+..|+++++.++|+||+++++++..+...|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~vK~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~   75 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDR----ETGETVALKKVALRRLE-GGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFV   75 (286)
T ss_pred             CceEEeecccCCCcEEEEEEEC----CCCceEEEEEEEccccc-chhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeE
Confidence            5899999999999999999976    36889999999765322 234566788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+ +++|..++.... ..+++..++.++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++.......
T Consensus        76 ~v~e~~-~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~  153 (286)
T cd07832          76 LVMEYM-PSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEE  153 (286)
T ss_pred             EEeccc-CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCC
Confidence            999999 999998887643 669999999999999999999999999999999999999999999999999876443211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                     ......|+.
T Consensus       154 ~~---------------------------------------------------------------------~~~~~~~~~  164 (286)
T cd07832         154 PR---------------------------------------------------------------------LYSHQVATR  164 (286)
T ss_pred             CC---------------------------------------------------------------------ccccccCcc
Confidence            00                                                                     001125899


Q ss_pred             CccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCCC---
Q 012762          323 EYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFPK---  379 (457)
Q Consensus       323 ~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~~---  379 (457)
                      .|+|||++.+.. ++.++|||||||++|||++|.+||.+......+..++....                   .++.   
T Consensus       165 ~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
T cd07832         165 WYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKP  244 (286)
T ss_pred             cccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCc
Confidence            999999987654 68999999999999999999999987666555444433211                   0110   


Q ss_pred             ------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          380 ------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       380 ------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                            ....+..+.++|++||..||++||+    ++++++||||.
T Consensus       245 ~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~----~~~~l~h~~~~  286 (286)
T cd07832         245 IPLEEIFPDASPEALDLLKGLLVYDPSKRLS----AAEALRHPYFT  286 (286)
T ss_pred             chHHHhCCCccHHHHHHHHHHhccChhhCCC----HHHHhhCcCcC
Confidence                  1235678999999999999999999    99999999994

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-43  Score=370.50  Aligned_cols=262  Identities=19%  Similarity=0.292  Sum_probs=224.0

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCC-CceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNN-GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~-~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+......+.+.||+|+||.||.|.....+... ...||+|.+.+.  .+..+...|.+|..+|+.++|||||+++|++.
T Consensus       688 ~v~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~--~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l  765 (1025)
T KOG1095|consen  688 EVPRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL--SSEQEVSDFLKEALLMSKFDHPNIVSLIGVCL  765 (1025)
T ss_pred             cCChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEecccc--CCHHHHHHHHHHHHHHhcCCCcceeeEEEeec
Confidence            355677899999999999999999987533211 345888888653  56678889999999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQP-----DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~-----~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      .....+|++|||+||+|..+++...     ...++......++.||++|+.||+++++|||||...|+||+....|||+|
T Consensus       766 ~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaD  845 (1025)
T KOG1095|consen  766 DSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIAD  845 (1025)
T ss_pred             CCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcc
Confidence            9999999999999999999998751     35688999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+|+.+......+.-.                                                               
T Consensus       846 FGlArDiy~~~yyr~~~---------------------------------------------------------------  862 (1025)
T KOG1095|consen  846 FGLARDIYDKDYYRKHG---------------------------------------------------------------  862 (1025)
T ss_pred             cchhHhhhhchheeccC---------------------------------------------------------------
Confidence            99998554333221100                                                               


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                        +   -.-...|||||.+....++.++|||||||+|||+++ |..||....+.+++...+.+. +++.+..+|+.+.++
T Consensus       863 --~---a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg-RL~~P~~CP~~ly~l  936 (1025)
T KOG1095|consen  863 --E---AMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG-RLDPPSYCPEKLYQL  936 (1025)
T ss_pred             --c---cccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC-ccCCCCCCChHHHHH
Confidence              0   012468999999999999999999999999999998 999999999999988877777 888888999999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |..||+.+|++||+    +..|++
T Consensus       937 M~~CW~~~pe~RP~----F~~i~~  956 (1025)
T KOG1095|consen  937 MLQCWKHDPEDRPS----FRTIVE  956 (1025)
T ss_pred             HHHHccCChhhCcc----HHHHHh
Confidence            99999999999999    666654

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.3e-42  Score=330.71  Aligned_cols=256  Identities=21%  Similarity=0.310  Sum_probs=208.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|+++    .+++.||||.+.............+..|+++++.++||||+++++++...+..
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   77 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCL----LDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNEL   77 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEe----CCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeE
Confidence            58999999999999999999987    37889999998765444445556778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ++||||+++++|..++...  ....+++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++....
T Consensus        78 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~  157 (267)
T cd08228          78 NIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceecc
Confidence            9999999999999887642  23458899999999999999999999999999999999999999999999999875443


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       158 ~~~~----------------------------------------------------------------------~~~~~~  167 (267)
T cd08228         158 SKTT----------------------------------------------------------------------AAHSLV  167 (267)
T ss_pred             chhH----------------------------------------------------------------------HHhcCC
Confidence            1110                                                                      001235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh--HHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      |+..|+|||++.+..++.++||||||+++|||++|..||.....  ......+............++..+.++|.+||..
T Consensus       168 ~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  247 (267)
T cd08228         168 GTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYP  247 (267)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCC
Confidence            88899999999988899999999999999999999999976432  2223332222211111234678899999999999


Q ss_pred             CCCCCCCCCcChHHHhcC
Q 012762          398 DPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~h  415 (457)
                      ||++||+    +.++++.
T Consensus       248 ~p~~Rp~----~~~vl~~  261 (267)
T cd08228         248 DPDQRPD----IGYVHQI  261 (267)
T ss_pred             CcccCcC----HHHHHHH
Confidence            9999999    8998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-42  Score=327.96  Aligned_cols=254  Identities=22%  Similarity=0.321  Sum_probs=211.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.+.||+|+||.||+|.+.     .+..||+|.++....    ....+.+|++++++++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~-----~~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   72 (261)
T cd05068           2 EIDRTSIQLLRKLGAGQFGEVWEGLWN-----NTTPVAVKTLKPGTM----DPKDFLAEAQIMKKLRHPKLIQLYAVCTL   72 (261)
T ss_pred             ccchhheeeEEEecccCCccEEEEEec-----CCeEEEEEeeCCCcc----cHHHHHHHHHHHHHCCCCCccceeEEEec
Confidence            456678999999999999999999864     456799999865432    24557789999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..|+||||+.+++|.+++.......+++..+..++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++..
T Consensus        73 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~  152 (261)
T cd05068          73 EEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARV  152 (261)
T ss_pred             CCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEE
Confidence            99999999999999999998776556789999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                     ...
T Consensus       153 ~~~~~~~~---------------------------------------------------------------------~~~  163 (261)
T cd05068         153 IKEDIYEA---------------------------------------------------------------------REG  163 (261)
T ss_pred             ccCCcccc---------------------------------------------------------------------cCC
Confidence            43110000                                                                     000


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++|||||||++|||++ |+.||.+.........+. .....+....++..+.+++.+||.
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~  242 (261)
T cd05068         164 AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVD-QGYRMPCPPGCPKELYDIMLDCWK  242 (261)
T ss_pred             CcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHhh
Confidence            123468999999998889999999999999999998 999998877665555543 334445555688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +.+|++
T Consensus       243 ~~P~~Rp~----~~~l~~  256 (261)
T cd05068         243 EDPDDRPT----FETLQW  256 (261)
T ss_pred             cCcccCCC----HHHHHH
Confidence            99999999    777754

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=3e-42  Score=337.56  Aligned_cols=260  Identities=26%  Similarity=0.364  Sum_probs=209.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ..++|++.+.||.|+||.||+|.++    .+|..||+|++...... ........+|++++++++|+||+++++++... 
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDT----TSGEIVALKKVRMDNER-DGIPISSLREITLLLNLRHPNIVELKEVVVGKH   79 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEEC----CCCcEEEEEEEEeccCC-CCCcchhhHHHHHHHhCCCCCCcceEEEEecCC
Confidence            4578999999999999999999986    47889999998654321 12233455699999999999999999998755 


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       +.+|+||||+. ++|..++.... ..+++..++.++.||+.||.|||+.|++||||||+||+++.++.+||+|||++..
T Consensus        80 ~~~~~lv~e~~~-~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          80 LDSIFLVMEYCE-QDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLART  157 (309)
T ss_pred             CCeEEEEEecCC-CCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeee
Confidence             56899999995 58887776542 5689999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                      ...
T Consensus       158 ~~~~~~~----------------------------------------------------------------------~~~  167 (309)
T cd07845         158 YGLPAKP----------------------------------------------------------------------MTP  167 (309)
T ss_pred             cCCccCC----------------------------------------------------------------------CCc
Confidence            4321100                                                                      001


Q ss_pred             ccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CC
Q 012762          318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EF  377 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~  377 (457)
                      ..++..|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..+.....                   ..
T Consensus       168 ~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (309)
T cd07845         168 KVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTL  247 (309)
T ss_pred             ccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccc
Confidence            135788999999876 4578999999999999999999999998777666655544211                   11


Q ss_pred             CCC---------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          378 PKE---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       378 ~~~---------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +..         ...+..+.++|.+||..||++||+    +.++++||||+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t----~~~il~h~~f~~  295 (309)
T cd07845         248 PKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRAT----AEEALESSYFKE  295 (309)
T ss_pred             cCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcC----HHHHhcChhhcc
Confidence            110         124678899999999999999999    999999999984

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=3.1e-42  Score=333.28  Aligned_cols=258  Identities=26%  Similarity=0.407  Sum_probs=206.0

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE-
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD-  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~-  156 (457)
                      ...++|++.+.||+|+||+||+|.++    .+++.||+|++....    .....+..|+.+++.+ +|+||+++++++. 
T Consensus        15 ~~~~~~~~~~~lg~g~~~~vy~~~~~----~~~~~~~ik~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638          15 DPSDTWEIIETIGKGTYGKVFKVLNK----KNGSKAAVKILDPIH----DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             CcccceeeeeeeccCCCcEEEEEEEC----CCCceeEEEeecccc----chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            34568999999999999999999876    477899999986432    2234567799999999 7999999999873 


Q ss_pred             ----cCCcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEe
Q 012762          157 ----CPRWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT  230 (457)
Q Consensus       157 ----~~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~  230 (457)
                          .++..|+||||+++++|..++...  ....+++..+..++.|++.||.|||+.+|+||||||+||+++.++.++|+
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~  166 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLV  166 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEc
Confidence                345789999999999999887532  23568899999999999999999999999999999999999999999999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.......                                                                   
T Consensus       167 dfg~~~~~~~~~~-------------------------------------------------------------------  179 (286)
T cd06638         167 DFGVSAQLTSTRL-------------------------------------------------------------------  179 (286)
T ss_pred             cCCceeecccCCC-------------------------------------------------------------------
Confidence            9999754421100                                                                   


Q ss_pred             CccccccccCCCCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-cCCCCCCCCC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-LEFPKEPSVP  384 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~  384 (457)
                         ......|+..|+|||++..     ..++.++|||||||++|||++|+.||...........+.... ........++
T Consensus       180 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (286)
T cd06638         180 ---RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWS  256 (286)
T ss_pred             ---ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcC
Confidence               0012258999999999853     347889999999999999999999998765444333322221 1111223367


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ..+.++|.+||+.||++||+    +.+|++|+||
T Consensus       257 ~~~~~li~~~l~~~p~~Rps----~~ell~~~~~  286 (286)
T cd06638         257 NEFNDFIRKCLTKDYEKRPT----VSDLLQHVFI  286 (286)
T ss_pred             HHHHHHHHHHccCCcccCCC----HHHHhhcccC
Confidence            78999999999999999999    9999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.7e-42  Score=331.01  Aligned_cols=263  Identities=17%  Similarity=0.234  Sum_probs=213.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      +.+..++|++.+.||+|+||.||+|.++... ...+..||+|.+....  .......+.+|+++|+.++|+||+++++++
T Consensus         1 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~   78 (277)
T cd05032           1 WELPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA--SMRERIEFLNEASVMKEFNCHHVVRLLGVV   78 (277)
T ss_pred             CccchHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc--CHHHHHHHHHHHHHHHhCCCCceeEEEEEE
Confidence            3566789999999999999999999886432 2345789999986542  122345677899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP--------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~--------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~v  227 (457)
                      ......|+||||+.+++|..++....        ...+++..+..++.||+.||.|||+.+|+||||||+|||++.++.+
T Consensus        79 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~  158 (277)
T cd05032          79 STGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTV  158 (277)
T ss_pred             cCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCE
Confidence            99999999999999999998886532        2346888999999999999999999999999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||+|||+++........                                                               
T Consensus       159 kl~dfg~~~~~~~~~~~---------------------------------------------------------------  175 (277)
T cd05032         159 KIGDFGMTRDIYETDYY---------------------------------------------------------------  175 (277)
T ss_pred             EECCcccchhhccCccc---------------------------------------------------------------
Confidence            99999997644321100                                                               


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                           .......++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+. .......+..++..
T Consensus       176 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  249 (277)
T cd05032         176 -----RKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVI-DGGHLDLPENCPDK  249 (277)
T ss_pred             -----ccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHh-cCCCCCCCCCCCHH
Confidence                 00012246789999999988889999999999999999998 999998877666655555 33333334457899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +.+++.+||..+|++||+    +.+|+.
T Consensus       250 ~~~li~~~l~~~p~~Rpt----~~~l~~  273 (277)
T cd05032         250 LLELMRMCWQYNPKMRPT----FLEIVS  273 (277)
T ss_pred             HHHHHHHHcCCChhhCCC----HHHHHH
Confidence            999999999999999999    888875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=3.2e-42  Score=334.32  Aligned_cols=255  Identities=26%  Similarity=0.380  Sum_probs=200.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+|++.+.||+|+||.||+|.++    .++..||+|++.....  ......+.+|+++++.++|+||+++++++..++..
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   78 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISR----INGQLVALKVISMKTE--EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETL   78 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEc----CCCcEEEEEEecccCc--CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeE
Confidence            57999999999999999999876    3678999999865422  22234566799999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+. ++|..++... ...+++..++.++.||+.||.|||+.||+|+||||+|||++.++.++|+|||+++.....
T Consensus        79 ~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~  156 (291)
T cd07870          79 TFVFEYMH-TDLAQYMIQH-PGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIP  156 (291)
T ss_pred             EEEEeccc-CCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCC
Confidence            99999994 6776665543 256788889999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                      .....++
T Consensus       157 ~~~----------------------------------------------------------------------~~~~~~~  166 (291)
T cd07870         157 SQT----------------------------------------------------------------------YSSEVVT  166 (291)
T ss_pred             CCC----------------------------------------------------------------------CCCcccc
Confidence            000                                                                      0012478


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhccc-----------CC-----------
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARAL-----------EF-----------  377 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~-----------~~-----------  377 (457)
                      ..|+|||++.+. .++.++|||||||++|+|++|..||.+.... +.+..+.....           ..           
T Consensus       167 ~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (291)
T cd07870         167 LWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPC  246 (291)
T ss_pred             ccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcccc
Confidence            899999998764 4788999999999999999999999865432 22222211000           00           


Q ss_pred             -C-------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          378 -P-------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       378 -~-------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                       +       .....+.++.+++.+||..||.+|||    +.|++.||||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t----~~~~l~h~~~  291 (291)
T cd07870         247 KPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRIS----AQDALLHPYF  291 (291)
T ss_pred             CCcchhhhccccCCChHHHHHHHHHhCcCcccCcC----HHHHhcCCCC
Confidence             0       00112467899999999999999999    9999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.1e-42  Score=329.30  Aligned_cols=258  Identities=27%  Similarity=0.458  Sum_probs=208.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-------hhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-------RNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-------~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      +|.+.+.||.|+||.||+|...    .+++.||+|.+.......       ....+.+..|+++++.++|+||+++++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   77 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNV----TTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFE   77 (272)
T ss_pred             ceeecceecccCceEEEEEeec----CCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEe
Confidence            5888999999999999999876    478899999885422111       11234567799999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+..++||||+.+++|..++...  ..+++..++.++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~  155 (272)
T cd06629          78 TTEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGIS  155 (272)
T ss_pred             ccCCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccc
Confidence            9999999999999999999988775  67899999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                    ....
T Consensus       156 ~~~~~~~~--------------------------------------------------------------------~~~~  167 (272)
T cd06629         156 KKSDDIYD--------------------------------------------------------------------NDQN  167 (272)
T ss_pred             cccccccc--------------------------------------------------------------------cccc
Confidence            54321100                                                                    0001


Q ss_pred             ccccCCCCccCchhhcCCC--CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC--CCC--CCCCChHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE--FPK--EPSVPGPAKD  389 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~--~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~  389 (457)
                      ....|+..|+|||++....  ++.++|+||||+++|+|++|..||...........+......  ++.  ...++..+.+
T Consensus       168 ~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (272)
T cd06629         168 MSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALD  247 (272)
T ss_pred             ccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHH
Confidence            1235889999999998654  789999999999999999999999765554444333222211  121  1346789999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      +|.+||..||++||+    +.++++||||
T Consensus       248 li~~~l~~~p~~Rps----~~~il~~~~~  272 (272)
T cd06629         248 FLNACFTINPDNRPT----ARELLQHPFI  272 (272)
T ss_pred             HHHHHhcCChhhCCC----HHHHhhCCCC
Confidence            999999999999999    9999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.2e-42  Score=328.28  Aligned_cols=252  Identities=21%  Similarity=0.312  Sum_probs=208.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +.++|++.+.||+|+||+||+|.+.     .+..+|+|.+.....    ....+..|++++++++||||+++++++...+
T Consensus         2 ~~~~~~~~~~lg~G~~~~vy~~~~~-----~~~~~aik~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   72 (256)
T cd05113           2 DPKDLTFLKELGTGQFGVVKYGKWR-----GQYDVAIKMIKEGSM----SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR   72 (256)
T ss_pred             ChHHeEEeeEecCcccceEEEEEec-----CCCcEEEEEcCCCcc----cHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            4568999999999999999999865     344699998865432    2356788999999999999999999999989


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+.+++|.+++.... ..+++..++.++.||+.||.|||+.|++|+||||+|||++.++.+||+|||+++...
T Consensus        73 ~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~  151 (256)
T cd05113          73 PIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL  151 (256)
T ss_pred             CcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecC
Confidence            9999999999999999887643 368999999999999999999999999999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                     ......
T Consensus       152 ~~~~~---------------------------------------------------------------------~~~~~~  162 (256)
T cd05113         152 DDEYT---------------------------------------------------------------------SSVGSK  162 (256)
T ss_pred             CCcee---------------------------------------------------------------------ecCCCc
Confidence            11000                                                                     000113


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++|||||||++|+|++ |..||...........+.... ........+..+.+++.+||..|
T Consensus       163 ~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~cl~~~  241 (256)
T cd05113         163 FPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL-RLYRPHLASEKVYAIMYSCWHEK  241 (256)
T ss_pred             cChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHcCCC
Confidence            6678999999998889999999999999999998 999998877666666665443 33333457789999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++||+    +.+|+.+
T Consensus       242 p~~Rp~----~~~ll~~  254 (256)
T cd05113         242 AEERPT----FQQLLSS  254 (256)
T ss_pred             cccCCC----HHHHHHh
Confidence            999999    9998864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=5.5e-42  Score=325.80  Aligned_cols=255  Identities=29%  Similarity=0.450  Sum_probs=212.0

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh--hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV--SRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +|+..+.||+|+||+||+|.++    .++..||+|++......  .......+..|+++++.++|+||+++++++.....
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNL----DDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDN   76 (258)
T ss_pred             CccccceeeecCCceEEEEEEc----CCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCe
Confidence            4778899999999999999876    37889999998654321  12344677889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|+||||+++++|..++...  ..+++..+..++.||+.||.|||+.||+|+||+|+||+++.++.+||+|||++.....
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          77 LYIFLELVPGGSLAKLLKKY--GSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEEEEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            99999999999999998765  5689999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                       ......|
T Consensus       155 ~~-----------------------------------------------------------------------~~~~~~~  163 (258)
T cd06632         155 FS-----------------------------------------------------------------------FAKSFKG  163 (258)
T ss_pred             cc-----------------------------------------------------------------------cccccCC
Confidence            11                                                                       0012358


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|++||.+.... ++.++|+|||||++|+|++|+.||...........+............++.++.+++.+||..||
T Consensus       164 ~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  243 (258)
T cd06632         164 SPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDP  243 (258)
T ss_pred             CcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCc
Confidence            89999999998776 89999999999999999999999987665444444433222222234578899999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f  418 (457)
                      .+||+    +.+++.|||+
T Consensus       244 ~~Rp~----~~~~l~~~~~  258 (258)
T cd06632         244 SLRPT----AAELLEHPFV  258 (258)
T ss_pred             ccCcC----HHHHhcCCCC
Confidence            99999    9999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=4.8e-42  Score=326.21  Aligned_cols=256  Identities=25%  Similarity=0.466  Sum_probs=215.0

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.+.+.||.|+||.||+|.++    .++..||+|.+....... .....+.+|+++++.++|+||+++++.+...+..|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~-~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~   75 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAK----SDSEHCVIKEIDLTKMPV-KEKEASKKEVILLAKMKHPNIVTFFASFQENGRLF   75 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEc----CCCceEEEEEeeHhhccc-hhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEE
Confidence            5889999999999999999987    377889999997654322 34456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCCcCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKGDNS  241 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~~~~  241 (457)
                      +||||+.+++|.+++.......+++..++.++.||+.||.|||+.+++|+||||+||+++.++ .++|+|||.+......
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS  155 (257)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCC
Confidence            999999999999988776555689999999999999999999999999999999999999886 4699999987544311


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                      .....|+
T Consensus       156 ~~~----------------------------------------------------------------------~~~~~~~  165 (257)
T cd08225         156 MEL----------------------------------------------------------------------AYTCVGT  165 (257)
T ss_pred             ccc----------------------------------------------------------------------ccccCCC
Confidence            100                                                                      0012488


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|+|||||++|||++|..||...........+..... .+..+.++.++.++|.+||..+|++
T Consensus       166 ~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~~  244 (257)
T cd08225         166 PYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYF-APISPNFSRDLRSLISQLFKVSPRD  244 (257)
T ss_pred             ccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHhccChhh
Confidence            999999999888899999999999999999999999987766555555444332 2233457889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCC
Q 012762          402 RMGSKMGATAIKRHQFF  418 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f  418 (457)
                      ||+    +.++++||||
T Consensus       245 Rpt----~~~ll~~~~~  257 (257)
T cd08225         245 RPS----ITSILKRPFL  257 (257)
T ss_pred             CcC----HHHHhhCCCC
Confidence            999    9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-42  Score=327.64  Aligned_cols=259  Identities=22%  Similarity=0.308  Sum_probs=213.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.++... .....||+|+++...  .......+..|+.+++.++|+||+++++++...+
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~-~~~~~vaik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (266)
T cd05033           2 DPSYVTIEKVIGGGEFGEVCRGRLKLPG-KKEIDVAIKTLKAGS--SDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR   78 (266)
T ss_pred             ChHHceeeeEecCCccceEEEEEEccCC-CCcceEEEEEcCCCC--ChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCC
Confidence            3568999999999999999999986431 235689999986542  2334556778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++.... +.+++..+..++.|++.||.|||+++|+|+||||+|||++.++.++|+|||++....
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          79 PVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            9999999999999999887643 478999999999999999999999999999999999999999999999999986553


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .......                                                                    .....
T Consensus       158 ~~~~~~~--------------------------------------------------------------------~~~~~  169 (266)
T cd05033         158 DSEATYT--------------------------------------------------------------------TKGGK  169 (266)
T ss_pred             cccccee--------------------------------------------------------------------ccCCC
Confidence            1110000                                                                    00112


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||.+.+..++.++|||||||++|+|++ |..||...........+.. ....+....++..+.+++.+||+.|
T Consensus       170 ~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~cl~~~  248 (266)
T cd05033         170 IPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVED-GYRLPPPMDCPSALYQLMLDCWQKD  248 (266)
T ss_pred             CCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            5678999999998889999999999999999997 9999988776665555543 3444555568899999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++||+    +.+|+++
T Consensus       249 p~~Rp~----~~ei~~~  261 (266)
T cd05033         249 RNERPT----FSQIVST  261 (266)
T ss_pred             cccCcC----HHHHHHH
Confidence            999999    8888764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=9.5e-43  Score=332.74  Aligned_cols=256  Identities=29%  Similarity=0.411  Sum_probs=211.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|+||.||+|.++    .+++.||+|++.....  ......+.+|+++++.++|+||+++++++...+..
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   74 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHR----PTGKIMAVKTIRLEIN--EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDI   74 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEc----CCCcEEEEEEEecccC--hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEE
Confidence            46888999999999999999986    4788999999876532  24456678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |+||||+.+++|.+++.... ..+++..+..++.|++.||.|||+ .|++|+||||+||+++.++.++|+|||++.....
T Consensus        75 ~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~  153 (265)
T cd06605          75 SICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVN  153 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHH
Confidence            99999999999999987653 678999999999999999999999 9999999999999999999999999998744321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                        ....|
T Consensus       154 ~~~------------------------------------------------------------------------~~~~~  161 (265)
T cd06605         154 SLA------------------------------------------------------------------------KTFVG  161 (265)
T ss_pred             HHh------------------------------------------------------------------------hcccC
Confidence            100                                                                        01358


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-----hHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-----HELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      +..|+|||++.+..++.++|||||||++|+|++|..||....     .......+............++.++.++|.+||
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  241 (265)
T cd06605         162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCL  241 (265)
T ss_pred             ChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHc
Confidence            889999999999999999999999999999999999997642     122222222221111111127888999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ..||++||+    +.+++.||||+.
T Consensus       242 ~~~p~~Rpt----~~~ll~~~~~~~  262 (265)
T cd06605         242 IKDPRERPS----YKELLEHPFIKK  262 (265)
T ss_pred             CCCchhCcC----HHHHhhCchhhc
Confidence            999999999    999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=4.3e-42  Score=333.87  Aligned_cols=261  Identities=24%  Similarity=0.349  Sum_probs=209.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|+||+||+|.++    .+++.||+|.+..... .......+..|+++++.++|+||+++++++......
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   76 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDR----VTNETIALKKIRLEQE-DEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRL   76 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEec----CCCcEEEEEehhhccc-cccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeE
Confidence            67999999999999999999876    3788999999865432 122345677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~~~~  240 (457)
                      |+||||+ +++|..++.......+++..++.++.||+.||.|||++||+|+||+|+||+++. ++.+||+|||++.....
T Consensus        77 ~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~  155 (294)
T PLN00009         77 YLVFEYL-DLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI  155 (294)
T ss_pred             EEEEecc-cccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCC
Confidence            9999999 468877776655455788999999999999999999999999999999999985 45799999999754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                      .....|
T Consensus       156 ~~~~----------------------------------------------------------------------~~~~~~  165 (294)
T PLN00009        156 PVRT----------------------------------------------------------------------FTHEVV  165 (294)
T ss_pred             Cccc----------------------------------------------------------------------cccCce
Confidence            1000                                                                      001247


Q ss_pred             CCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------CC---
Q 012762          321 THEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------FP---  378 (457)
Q Consensus       321 t~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------~~---  378 (457)
                      +..|+|||++.+. .++.++|||||||++|+|++|+.||........+.++......                  .+   
T Consensus       166 ~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (294)
T PLN00009        166 TLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWP  245 (294)
T ss_pred             eecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCC
Confidence            8899999998764 4789999999999999999999999877655544443321000                  00   


Q ss_pred             ------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          379 ------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       379 ------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                            ..+.++..+.+++.+||..||++||+    +.++++||||++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps----~~~~l~~~~~~~~~  291 (294)
T PLN00009        246 PKDLATVVPTLEPAGVDLLSKMLRLDPSKRIT----ARAALEHEYFKDLG  291 (294)
T ss_pred             CCCHHHhCcCCChHHHHHHHHHccCChhhCcC----HHHHhcCchHhHHh
Confidence                  01346778999999999999999999    99999999999754

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=3e-42  Score=332.17  Aligned_cols=260  Identities=20%  Similarity=0.302  Sum_probs=213.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ..++|.+.+.||+|+||.||+|.+.... ...+..||+|+++...  .......+.+|+++|+.++|+||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   80 (280)
T cd05049           3 QRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETA--SNDARKDFEREAELLTNFQHENIVKFYGVCTEG   80 (280)
T ss_pred             ChHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccC--CHHHHHHHHHHHHHHHhcCCCCchheeeEEecC
Confidence            4567999999999999999999875321 2356789999986542  222456788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQP------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~  226 (457)
                      ...|+||||+++++|..++....            ...+++..+..++.||+.||.|||++|++||||||+||+++.++.
T Consensus        81 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~  160 (280)
T cd05049          81 DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLV  160 (280)
T ss_pred             CCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCe
Confidence            99999999999999999987642            245788899999999999999999999999999999999999999


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      ++|+|||++..........                                                             
T Consensus       161 ~kl~d~g~~~~~~~~~~~~-------------------------------------------------------------  179 (280)
T cd05049         161 VKIGDFGMSRDVYTTDYYR-------------------------------------------------------------  179 (280)
T ss_pred             EEECCcccceecccCccee-------------------------------------------------------------
Confidence            9999999875432110000                                                             


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                             ......++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+..+....+ ...++.
T Consensus       180 -------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~  251 (280)
T cd05049         180 -------VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQR-PRTCPS  251 (280)
T ss_pred             -------cCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCCC-CCCCCH
Confidence                   0001236788999999999999999999999999999998 9999988777776666665443332 345889


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .+.+++.+||..||++||+    +.|+++
T Consensus       252 ~~~~li~~~l~~~p~~Rp~----~~eil~  276 (280)
T cd05049         252 EVYDIMLGCWKRDPQQRIN----IKDIHE  276 (280)
T ss_pred             HHHHHHHHHcCCCcccCCC----HHHHHH
Confidence            9999999999999999999    888875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=5.6e-42  Score=334.80  Aligned_cols=265  Identities=21%  Similarity=0.297  Sum_probs=216.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|.+.+.||+|+||.||+|.+... ....+..||+|+++....  ......+..|+++++++ +|+||+++++
T Consensus        29 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~  106 (302)
T cd05055          29 KWEFPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH--SSEREALMSELKIMSHLGNHENIVNLLG  106 (302)
T ss_pred             cccccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC--hHHHHHHHHHHHHHHhccCCCCcceEEE
Confidence            4556677899999999999999999986421 223566899999875422  23345678899999999 7999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++...+..|+||||+.+++|..++.......+++.++..++.||+.||.|||+++|+|+||||+|||++.++.++|+|||
T Consensus       107 ~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg  186 (302)
T cd05055         107 ACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFG  186 (302)
T ss_pred             EEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCc
Confidence            99999999999999999999999877544558999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.........                                                                    
T Consensus       187 ~~~~~~~~~~~~--------------------------------------------------------------------  198 (302)
T cd05055         187 LARDIMNDSNYV--------------------------------------------------------------------  198 (302)
T ss_pred             ccccccCCCcee--------------------------------------------------------------------
Confidence            976442111000                                                                    


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ......++..|+|||++.+..++.++|||||||++|||++ |..||........+...+............+..+.+++.
T Consensus       199 ~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  278 (302)
T cd05055         199 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMK  278 (302)
T ss_pred             ecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHH
Confidence            0001236788999999998889999999999999999998 999998876655555555555444444567889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +||..+|++||+    +.||++
T Consensus       279 ~cl~~~p~~Rpt----~~ell~  296 (302)
T cd05055         279 TCWDADPLKRPT----FKQIVQ  296 (302)
T ss_pred             HHcCCCchhCcC----HHHHHH
Confidence            999999999999    888865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=3.7e-42  Score=334.84  Aligned_cols=258  Identities=27%  Similarity=0.363  Sum_probs=209.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS--RNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +|.+.+.||+|+||.||+|.++    .+++.||+|.+.......  ......+..|+++++.++|+||+++++++.+.+.
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~----~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~   76 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDK----ETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSN   76 (298)
T ss_pred             CceeeeeeeeccccEEEEEEEC----CCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCE
Confidence            4888999999999999999976    368899999997654331  2234456679999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+ +++|..++.... ..+++..++.++.||+.||.|||++||+|+||||+|||++.++.++|+|||++.....
T Consensus        77 ~~lv~e~~-~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  154 (298)
T cd07841          77 INLVFEFM-ETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             EEEEEccc-CCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccC
Confidence            99999999 999999987653 3699999999999999999999999999999999999999999999999999765432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                      .....+
T Consensus       155 ~~~~----------------------------------------------------------------------~~~~~~  164 (298)
T cd07841         155 PNRK----------------------------------------------------------------------MTHQVV  164 (298)
T ss_pred             CCcc----------------------------------------------------------------------cccccc
Confidence            1100                                                                      001236


Q ss_pred             CCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----C----------------
Q 012762          321 THEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----P----------------  378 (457)
Q Consensus       321 t~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----~----------------  378 (457)
                      +..|+|||.+.+ ..++.++|||||||++|||++|.+||.+......+.++.......     +                
T Consensus       165 ~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (298)
T cd07841         165 TRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPP  244 (298)
T ss_pred             ceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCC
Confidence            788999999865 357899999999999999999988888766555444443211000     0                


Q ss_pred             -----CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 -----KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 -----~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                           .....+..+.++|.+||..||++||+    +.++++|+||++
T Consensus       245 ~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~e~l~~~~~~~  287 (298)
T cd07841         245 TPLKQIFPAASDDALDLLQRLLTLNPNKRIT----ARQALEHPYFSN  287 (298)
T ss_pred             cchhhhcccccHHHHHHHHHHhcCCcccCcC----HHHHhhCccccC
Confidence                 01234678899999999999999999    999999999996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=3.9e-42  Score=343.34  Aligned_cols=254  Identities=26%  Similarity=0.406  Sum_probs=204.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++.+.||+|+||+||+|.+.    .+++.||+|++.+.. ........+.+|++++++++|+||+++++++...  
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   89 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDT----VTGQNVAIKKLSRPF-QNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKS   89 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEEC----CCCCEEEEEecCccc-cChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCC
Confidence            468999999999999999999876    378899999986432 1223345566799999999999999999998643  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          .+.|+||||+ .++|...+...    +++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        90 ~~~~~~~~lv~e~~-~~~l~~~~~~~----l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~  164 (353)
T cd07850          90 LEEFQDVYLVMELM-DANLCQVIQMD----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL  164 (353)
T ss_pred             ccccCcEEEEEecc-CCCHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCcc
Confidence                3579999999 56887776542    88999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       165 ~~~~~~~~~-----------------------------------------------------------------------  173 (353)
T cd07850         165 ARTAGTSFM-----------------------------------------------------------------------  173 (353)
T ss_pred             ceeCCCCCC-----------------------------------------------------------------------
Confidence            754321100                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----------------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----------------  377 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----------------  377 (457)
                      .....|+..|+|||++.+..++.++|||||||++|+|++|+.||...+.......++......                 
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (353)
T cd07850         174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVE  253 (353)
T ss_pred             CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhh
Confidence            012358899999999999999999999999999999999999998766544333332211000                 


Q ss_pred             -------------------CC-----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          378 -------------------PK-----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       378 -------------------~~-----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                                         +.     ....+..+.++|.+||..||++||+    +.|+|+||||+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~eiL~~~~~~  315 (353)
T cd07850         254 NRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRIS----VDDALQHPYIN  315 (353)
T ss_pred             cCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcC----HHHHhcChhHh
Confidence                               00     1123556899999999999999999    99999999998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2.5e-42  Score=329.23  Aligned_cols=252  Identities=22%  Similarity=0.338  Sum_probs=213.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ...+|++.++||.|+||.||+|.++     .+..+|+|++.....   .....+..|+++++.++|+||+++++++...+
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~-----~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   75 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWK-----NRVRVAIKILKSDDL---LKQQDFQKEVQALKRLRHKHLISLFAVCSVGE   75 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEec-----CCCcEEEEeccccch---hhHHHHHHHHHHHhcCCCcchhheeeeEecCC
Confidence            3457999999999999999999986     377899999876432   23456778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~  155 (261)
T cd05148          76 PVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIK  155 (261)
T ss_pred             CeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcC
Confidence            99999999999999999987666778999999999999999999999999999999999999999999999999975442


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       156 ~~~~~----------------------------------------------------------------------~~~~~  165 (261)
T cd05148         156 EDVYL----------------------------------------------------------------------SSDKK  165 (261)
T ss_pred             Ccccc----------------------------------------------------------------------ccCCC
Confidence            11100                                                                      00113


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++|||||||++|+|++ |+.||.+....+.+..+. .....+....++..+.+++.+||..|
T Consensus       166 ~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~~  244 (261)
T cd05148         166 IPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQIT-AGYRMPCPAKCPQEIYKIMLECWAAE  244 (261)
T ss_pred             CceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH-hCCcCCCCCCCCHHHHHHHHHHcCCC
Confidence            5778999999998889999999999999999998 899998877666666655 33455555678899999999999999


Q ss_pred             CCCCCCCCcChHHHhc
Q 012762          399 PTRRMGSKMGATAIKR  414 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~  414 (457)
                      |++||+    +.+|++
T Consensus       245 p~~Rpt----~~~l~~  256 (261)
T cd05148         245 PEDRPS----FKALRE  256 (261)
T ss_pred             chhCcC----HHHHHH
Confidence            999999    777654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.3e-42  Score=337.74  Aligned_cols=254  Identities=27%  Similarity=0.432  Sum_probs=210.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|.....||+|+||.||++.+.    .++..||||.+....   ......+.+|+.++++++|+||+++++.+..++..|
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~----~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~   95 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEK----HTGKQVAVKKMDLRK---QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELW   95 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEEC----CCCCEEEEEEEecch---HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEE
Confidence            3555678999999999999875    468899999986532   234456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++..   ..+++..+..++.||+.||.|||++||+||||||+||+++.++.++|+|||++.......
T Consensus        96 lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~  172 (292)
T cd06658          96 VVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV  172 (292)
T ss_pred             EEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhccccc
Confidence            99999999999988755   468999999999999999999999999999999999999999999999999875332110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       173 ~----------------------------------------------------------------------~~~~~~~~~  182 (292)
T cd06658         173 P----------------------------------------------------------------------KRKSLVGTP  182 (292)
T ss_pred             c----------------------------------------------------------------------cCceeecCc
Confidence            0                                                                      001235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-cCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-LEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|+|||++.+..++.++|||||||++|||++|..||........+..+.... ...+....++..+.+++.+||..||.+
T Consensus       183 ~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  262 (292)
T cd06658         183 YWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQ  262 (292)
T ss_pred             cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhH
Confidence            9999999998889999999999999999999999998766555444433221 112222346788999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||+    ++++++||||+.
T Consensus       263 Rpt----~~~il~~~~~~~  277 (292)
T cd06658         263 RAT----AQELLQHPFLKL  277 (292)
T ss_pred             CcC----HHHHhhChhhhc
Confidence            999    999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=7e-42  Score=334.75  Aligned_cols=255  Identities=23%  Similarity=0.305  Sum_probs=210.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ..|++.+.||+|+||+||+|.+.    .++..||+|++.............+.+|+++++.++||||+++++++..++..
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~----~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~   90 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDV----RTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTA   90 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEc----CCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeE
Confidence            56999999999999999999876    36889999998754433334456678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+. |+|.+++.... ..+++..+..++.||+.||.|||+.||+|+||+|+||+++.++.++|+|||++......
T Consensus        91 ~lv~e~~~-g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~  168 (307)
T cd06607          91 WLVMEYCL-GSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA  168 (307)
T ss_pred             EEEHHhhC-CCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC
Confidence            99999995 67766665432 46899999999999999999999999999999999999999999999999987533210


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                                ....|+
T Consensus       169 --------------------------------------------------------------------------~~~~~~  174 (307)
T cd06607         169 --------------------------------------------------------------------------NSFVGT  174 (307)
T ss_pred             --------------------------------------------------------------------------CCccCC
Confidence                                                                                      013478


Q ss_pred             CCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          322 HEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       322 ~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ..|+|||++.   ...++.++||||||+++|||++|..||...........+............++..++++|.+||..|
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  254 (307)
T cd06607         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKI  254 (307)
T ss_pred             ccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCC
Confidence            8999999985   3457889999999999999999999998776555444443332222222347788999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |++||+    +.+|+.||||..
T Consensus       255 p~~Rp~----~~~il~~~~~~~  272 (307)
T cd06607         255 PQDRPS----SEELLKHRFVLR  272 (307)
T ss_pred             hhhCcC----HHHHhcChhhcc
Confidence            999999    999999999985

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=6.9e-42  Score=326.23  Aligned_cols=258  Identities=28%  Similarity=0.443  Sum_probs=216.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|++|.||+|.+.    .+++.||+|++......  .....+..|++++..++|+||+++++++...+..
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~----~~~~~~~vk~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   74 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHK----PTGKIYALKKIHVDGDE--EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEI   74 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEc----CCCcEEEEEEeccCcch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeE
Confidence            36899999999999999999887    37889999998765321  3456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      ++||||+++++|.+++...  ..+++..+..++.||+.||.|||+ .|++|+||+|+||+++.++.++|+|||++.....
T Consensus        75 ~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          75 SIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             EEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            9999999999999998775  679999999999999999999999 9999999999999999999999999998754431


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                      .....+
T Consensus       153 ~~~~----------------------------------------------------------------------~~~~~~  162 (264)
T cd06623         153 TLDQ----------------------------------------------------------------------CNTFVG  162 (264)
T ss_pred             CCCc----------------------------------------------------------------------ccceee
Confidence            1110                                                                      012357


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCCCCC-CChHHHHHHHHHhh
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPKEPS-VPGPAKDLIAQLLV  396 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~L~  396 (457)
                      +..|+|||.+.+..++.++|+||||+++|+|++|..||....   .......+.. ......... ++..+.++|.+||.
T Consensus       163 ~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~  241 (264)
T cd06623         163 TVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICD-GPPPSLPAEEFSPEFRDFISACLQ  241 (264)
T ss_pred             cccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhc-CCCCCCCcccCCHHHHHHHHHHcc
Confidence            889999999998889999999999999999999999998764   2333333332 222223334 78899999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .+|++||+    +.++++||||+..+
T Consensus       242 ~~p~~R~~----~~~ll~~~~~~~~~  263 (264)
T cd06623         242 KDPKKRPS----AAELLQHPFIKKAD  263 (264)
T ss_pred             CChhhCCC----HHHHHhCHHHHhcc
Confidence            99999999    99999999998653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=5.4e-42  Score=335.06  Aligned_cols=255  Identities=22%  Similarity=0.334  Sum_probs=206.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCc--eEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC--FFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~--~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      +..++|++.+.||+|+||+||+|.++.    ++.  .+|+|.+...  ........+.+|++++.++ +|+||+++++++
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~a~~~~----~~~~~~~~ik~~~~~--~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~   77 (303)
T cd05088           4 LEWNDIKFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGAC   77 (303)
T ss_pred             cchhhceeeeeecCCCCceEEEEEEcc----CCceeeEEEEEeccc--CCHHHHHHHHHHHHHHHHhcCCCCcceEEEEE
Confidence            456789999999999999999999763    443  4577776532  2334456778899999999 899999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV  221 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll  221 (457)
                      ..++..|+||||+++++|..++....              ...+++..++.++.||+.||+|||++||+||||||+|||+
T Consensus        78 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili  157 (303)
T cd05088          78 EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV  157 (303)
T ss_pred             CCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEe
Confidence            99999999999999999999887542              2357899999999999999999999999999999999999


Q ss_pred             ccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCC
Q 012762          222 RSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP  301 (457)
Q Consensus       222 ~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (457)
                      +.++.+||+|||++.......                                                           
T Consensus       158 ~~~~~~kl~dfg~~~~~~~~~-----------------------------------------------------------  178 (303)
T cd05088         158 GENYVAKIADFGLSRGQEVYV-----------------------------------------------------------  178 (303)
T ss_pred             cCCCcEEeCccccCcccchhh-----------------------------------------------------------
Confidence            999999999999874211000                                                           


Q ss_pred             CCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCC
Q 012762          302 GTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKE  380 (457)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                                  ......++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+. ........
T Consensus       179 ------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~-~~~~~~~~  245 (303)
T cd05088         179 ------------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP-QGYRLEKP  245 (303)
T ss_pred             ------------hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHh-cCCcCCCC
Confidence                        0000124667999999988889999999999999999998 999998776655554443 22333333


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ..++.++.+|+.+||+.||++||+    +++++.+
T Consensus       246 ~~~~~~~~~li~~~l~~~p~~Rp~----~~~il~~  276 (303)
T cd05088         246 LNCDDEVYDLMRQCWREKPYERPS----FAQILVS  276 (303)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            457889999999999999999999    8887765

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=3.5e-42  Score=331.75  Aligned_cols=257  Identities=25%  Similarity=0.366  Sum_probs=213.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ..|+.+++||.|+||.||+|.++    .++..||+|++.....  ......+.+|+++++.++|+||+++++++..+...
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   77 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDN----RTQQVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKL   77 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEc----cCCEEEEEEEEecccc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEE
Confidence            35888899999999999999876    3678999999875422  23456778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|.+++..   ..+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++......
T Consensus        78 ~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06640          78 WIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             EEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCC
Confidence            999999999999988865   46899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......++
T Consensus       155 ~~----------------------------------------------------------------------~~~~~~~~  164 (277)
T cd06640         155 QI----------------------------------------------------------------------KRNTFVGT  164 (277)
T ss_pred             cc----------------------------------------------------------------------ccccccCc
Confidence            00                                                                      00123478


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      ..|+|||++.+..++.++|+|||||++|||++|..||...........+... ........++..+.+++.+||..||++
T Consensus       165 ~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~  243 (277)
T cd06640         165 PFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKN-NPPTLTGEFSKPFKEFIDACLNKDPSF  243 (277)
T ss_pred             ccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcC-CCCCCchhhhHHHHHHHHHHcccCccc
Confidence            8999999999888999999999999999999999999876655444333222 112222346788999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ||+    +.++++|+||....
T Consensus       244 Rp~----~~~il~~~~~~~~~  260 (277)
T cd06640         244 RPT----AKELLKHKFIVKNA  260 (277)
T ss_pred             CcC----HHHHHhChHhhhcc
Confidence            999    99999999997643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=8.6e-42  Score=331.66  Aligned_cols=258  Identities=23%  Similarity=0.362  Sum_probs=205.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~  160 (457)
                      ++|++.+.||+|+||.||+|.+.    .+++.||+|++..... .......+.+|+++++.+. |+||+++++++...+.
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~----~~~~~v~lK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~   75 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDK----NTGKLVALKKTRLEMD-EEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEK   75 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEEC----CCCcEEEEEeehhhcc-ccCCchHHHHHHHHHHHccCCCCccceeeeEeecCC
Confidence            46999999999999999999986    4788999999865422 2223456777999999995 6999999999987665


Q ss_pred             -----EEEEEeecCCCChHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEec
Q 012762          161 -----SCLLTEFCPGGDLHVLRQRQP---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTD  231 (457)
Q Consensus       161 -----~~lV~E~~~~~sL~~~~~~~~---~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~D  231 (457)
                           .|+||||+++ +|..++....   ...+++..++.++.||+.||.|||++||+||||||+||+++. ++.+||+|
T Consensus        76 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~d  154 (295)
T cd07837          76 NGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIAD  154 (295)
T ss_pred             CCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEee
Confidence                 8999999965 7877765532   246899999999999999999999999999999999999998 88999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++.........                                                                   
T Consensus       155 fg~~~~~~~~~~~-------------------------------------------------------------------  167 (295)
T cd07837         155 LGLGRAFSIPVKS-------------------------------------------------------------------  167 (295)
T ss_pred             cccceecCCCccc-------------------------------------------------------------------
Confidence            9987543211000                                                                   


Q ss_pred             ccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC--------------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE--------------  376 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~--------------  376 (457)
                         .....+++.|+|||++.+. .++.++|||||||++|+|++|..||.+.+....+..+......              
T Consensus       168 ---~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (295)
T cd07837         168 ---YTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRD  244 (295)
T ss_pred             ---cCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccc
Confidence               0011368889999998754 4789999999999999999999999887665554443321100              


Q ss_pred             ---CCC---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          377 ---FPK---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       377 ---~~~---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                         .+.         .+.++..+.++|.+||..||.+||+    +.+++.||||+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~----~~eil~~~~~~  295 (295)
T cd07837         245 WHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRIS----AKAALTHPYFD  295 (295)
T ss_pred             hhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCC----HHHHhcCCCcC
Confidence               000         1346788999999999999999999    99999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.6e-41  Score=323.87  Aligned_cols=259  Identities=29%  Similarity=0.524  Sum_probs=212.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.+.||+|+||.||+|.+.    .+++.||+|++...... ......+..|+++++.++|+||+++++++...+..+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~   75 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNL----DTGELMAVKEIRIQDND-PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVY   75 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEEC----CCCcEEEEEEEECcccc-hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEE
Confidence            5889999999999999999875    36889999999766432 345677888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +|+||+.+++|.+++...  ..+++..+..++.|++.||.|||+.||+|+||+|+||+++.++.+||+|||++.......
T Consensus        76 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~  153 (264)
T cd06626          76 IFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNT  153 (264)
T ss_pred             EEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCC
Confidence            999999999999988764  458899999999999999999999999999999999999999999999999976543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ....                                                                  .......++.
T Consensus       154 ~~~~------------------------------------------------------------------~~~~~~~~~~  167 (264)
T cd06626         154 TTMG------------------------------------------------------------------EEVQSLAGTP  167 (264)
T ss_pred             Cccc------------------------------------------------------------------ccccCCcCCc
Confidence            1000                                                                  0001234788


Q ss_pred             CccCchhhcCCC---CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc--ccCCCCCCCCChHHHHHHHHHhhh
Q 012762          323 EYLAPEIISGEG---HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       323 ~y~aPE~l~~~~---~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .|+|||++.+..   ++.++||||||+++|+|++|+.||............+..  ...++....++..+.+++.+||+.
T Consensus       168 ~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  247 (264)
T cd06626         168 AYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLES  247 (264)
T ss_pred             CccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccC
Confidence            999999998776   789999999999999999999999765433322222222  223344444588899999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ||.+||+    +.+++.|||+
T Consensus       248 ~p~~R~~----~~~i~~~~~~  264 (264)
T cd06626         248 DPKKRPT----ASELLQHPFV  264 (264)
T ss_pred             CcccCCC----HHHHhcCCCC
Confidence            9999999    9999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.2e-41  Score=329.60  Aligned_cols=254  Identities=28%  Similarity=0.446  Sum_probs=211.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.....||+|++|.||++.++    .++..+|+|++....   ......+.+|+.+++.++|+||+++++++...++.|
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~----~~~~~~~iK~~~~~~---~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~   92 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDK----STGRQVAVKKMDLRK---QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELW   92 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEEC----CCCCEEEEEEEeccc---hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEE
Confidence            4555679999999999999876    367899999986432   233455778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +|+||+.+++|.+++..   ..+++..+..++.||+.||+|||++||+||||+|+||+++.++.++|+|||++.......
T Consensus        93 ~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~  169 (285)
T cd06648          93 VVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV  169 (285)
T ss_pred             EEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCC
Confidence            99999999999988876   568999999999999999999999999999999999999999999999999864332100


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       170 ~----------------------------------------------------------------------~~~~~~~~~  179 (285)
T cd06648         170 P----------------------------------------------------------------------RRKSLVGTP  179 (285)
T ss_pred             c----------------------------------------------------------------------ccccccCCc
Confidence            0                                                                      001235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC-CCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP-KEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|+|||++.+..++.++|||||||++|+|++|+.||...........+........ ....++..+.+++++||..||++
T Consensus       180 ~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~  259 (285)
T cd06648         180 YWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQ  259 (285)
T ss_pred             cccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhh
Confidence            99999999988899999999999999999999999987665555555444322221 22347789999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||+    +.++++||||+.
T Consensus       260 Rpt----~~~il~~~~~~~  274 (285)
T cd06648         260 RAT----AAELLNHPFLAK  274 (285)
T ss_pred             CcC----HHHHccCccccc
Confidence            999    999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.1e-41  Score=325.70  Aligned_cols=253  Identities=23%  Similarity=0.326  Sum_probs=207.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.++||+|+||+||+|.+.     ....||+|++.+...    ....+.+|+++++.++|+||+++++++. 
T Consensus         2 ~~~~~~~~~~~~lg~g~~~~v~~~~~~-----~~~~valK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-   71 (262)
T cd05071           2 EIPRESLRLEVKLGQGCFGEVWMGTWN-----GTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-   71 (262)
T ss_pred             CCChHHeeEeeecCCCCCCcEEEEEec-----CCceEEEEecccCcc----CHHHHHHHHHHHHhCCCCCcceEEEEEC-
Confidence            355678999999999999999999875     234699999975332    2356788999999999999999999875 


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ....|+||||+.+++|.+++.......+++..+..++.|++.||.|||+.+|+|+||||+||+++.++.++|+|||++..
T Consensus        72 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~  151 (262)
T cd05071          72 EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  151 (262)
T ss_pred             CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceee
Confidence            45689999999999999999875556689999999999999999999999999999999999999999999999999764


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                     ...
T Consensus       152 ~~~~~~~~---------------------------------------------------------------------~~~  162 (262)
T cd05071         152 IEDNEYTA---------------------------------------------------------------------RQG  162 (262)
T ss_pred             cccccccc---------------------------------------------------------------------ccC
Confidence            43211000                                                                     001


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++|||||||++|+|++ |..||.+.........+.. ....+....++..+.+++.+||+
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~  241 (262)
T cd05071         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER-GYRMPCPPECPESLHDLMCQCWR  241 (262)
T ss_pred             CcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhc-CCCCCCccccCHHHHHHHHHHcc
Confidence            236778999999998889999999999999999999 8999988776666555443 33444455688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +.+++.
T Consensus       242 ~~p~~Rp~----~~~~~~  255 (262)
T cd05071         242 KEPEERPT----FEYLQA  255 (262)
T ss_pred             CCcccCCC----HHHHHH
Confidence            99999999    777654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.3e-41  Score=324.16  Aligned_cols=256  Identities=24%  Similarity=0.396  Sum_probs=213.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--CCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--PRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~~~  160 (457)
                      +|++++.||.|+||.||+|.+.    .++..||+|++..... ......++..|+++++.++|+||+++++++..  ...
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRK----SDGKILVWKEIDYGNM-TEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQT   75 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeec----CCCCEEEEEEEecccC-CHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCE
Confidence            5889999999999999999876    3778999999876433 23345667789999999999999999998753  456


Q ss_pred             EEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHH-----HcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLH-----MMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH-----~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      .|++|||+++++|..++...  ....+++..++.++.||+.||.|||     +.+++|+||||+||+++.++.+||+|||
T Consensus        76 ~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g  155 (265)
T cd08217          76 LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFG  155 (265)
T ss_pred             EEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccc
Confidence            79999999999999888653  2467899999999999999999999     8999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++........                                                                      
T Consensus       156 ~~~~~~~~~~----------------------------------------------------------------------  165 (265)
T cd08217         156 LAKILGHDSS----------------------------------------------------------------------  165 (265)
T ss_pred             ccccccCCcc----------------------------------------------------------------------
Confidence            9765432110                                                                      


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ......|+..|+|||++.+..++.++|+||||+++|+|++|..||...........+...... .....++.++.+++.+
T Consensus       166 ~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  244 (265)
T cd08217         166 FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFR-RIPYRYSSELNEVIKS  244 (265)
T ss_pred             cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCC-CCccccCHHHHHHHHH
Confidence            001235899999999999888999999999999999999999999987755555554444332 2234578899999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ||..||++||+    +.+|++|||+
T Consensus       245 ~l~~~p~~Rp~----~~~il~~~~~  265 (265)
T cd08217         245 MLNVDPDKRPS----TEELLQLPLI  265 (265)
T ss_pred             HccCCcccCCC----HHHHhhCCCC
Confidence            99999999999    9999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=9.3e-42  Score=325.46  Aligned_cols=253  Identities=21%  Similarity=0.348  Sum_probs=210.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|+++++||+|+||.||+|..+     .++.||+|.+.....    ....+.+|+++++.++|+||+++++++. 
T Consensus         2 ~~~~~~~~~~~~ig~G~~g~v~~~~~~-----~~~~~a~K~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-   71 (260)
T cd05067           2 EVPRETLKLVKKLGAGQFGEVWMGYYN-----GHTKVAIKSLKQGSM----SPEAFLAEANLMKQLQHPRLVRLYAVVT-   71 (260)
T ss_pred             ccchHHceeeeeeccCccceEEeeecC-----CCceEEEEEecCCCC----cHHHHHHHHHHHHhcCCcCeeeEEEEEc-
Confidence            456678999999999999999999864     567899999875432    2356778999999999999999999874 


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..|+||||+.+++|.+++.......+++..+..++.|++.||+|||+.|++|+||||+||+++.++.++|+|||++..
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          72 QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARL  151 (260)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceee
Confidence            45789999999999999988776667799999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                     ...
T Consensus       152 ~~~~~~~~---------------------------------------------------------------------~~~  162 (260)
T cd05067         152 IEDNEYTA---------------------------------------------------------------------REG  162 (260)
T ss_pred             cCCCCccc---------------------------------------------------------------------ccC
Confidence            43110000                                                                     001


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++||||||+++|||++ |+.||.+.........+. .....+.....+.++.+++.+||.
T Consensus       163 ~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~  241 (260)
T cd05067         163 AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLE-RGYRMPRPDNCPEELYELMRLCWK  241 (260)
T ss_pred             CcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHcc
Confidence            236778999999998889999999999999999998 999998877665555443 344445555688899999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +++++.
T Consensus       242 ~~p~~Rp~----~~~l~~  255 (260)
T cd05067         242 EKPEERPT----FEYLRS  255 (260)
T ss_pred             CChhhCCC----HHHHHH
Confidence            99999999    888765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=2.8e-42  Score=336.19  Aligned_cols=254  Identities=26%  Similarity=0.435  Sum_probs=210.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|.....||+|+||.||+|.+.    .++..||+|++.....   .....+.+|+.+++.++||||+++++++..++..|
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~----~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~   94 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREK----HSGRQVAVKMMDLRKQ---QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELW   94 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEc----CCCCEEEEEEEEeccc---chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEE
Confidence            3555668999999999999876    3688999999865432   23456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++..   ..+++..++.++.||+.||.|||+.||+||||||+||+++.++.++|+|||++.......
T Consensus        95 iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~  171 (297)
T cd06659          95 VLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV  171 (297)
T ss_pred             EEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccccc
Confidence            99999999999887765   568999999999999999999999999999999999999999999999999875332110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       172 ~----------------------------------------------------------------------~~~~~~~~~  181 (297)
T cd06659         172 P----------------------------------------------------------------------KRKSLVGTP  181 (297)
T ss_pred             c----------------------------------------------------------------------cccceecCc
Confidence            0                                                                      011235899


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|+|||++.+..++.++|||||||++|||++|+.||........+..+...... ......++..+.++|.+||..||++
T Consensus       182 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~  261 (297)
T cd06659         182 YWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQE  261 (297)
T ss_pred             cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCccc
Confidence            999999999888999999999999999999999999876655554443322211 1222357788999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||+    +.++++||||..
T Consensus       262 Rps----~~~ll~~~~~~~  276 (297)
T cd06659         262 RAT----AQELLDHPFLLQ  276 (297)
T ss_pred             CcC----HHHHhhChhhcc
Confidence            999    999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=3.2e-42  Score=329.08  Aligned_cols=255  Identities=27%  Similarity=0.434  Sum_probs=206.9

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLL  164 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV  164 (457)
                      .+.+.||.|.||.||+|.++......+..|+||+++..  ......+.+..|++++++++||||+++++++...+..++|
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv   79 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS--SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLV   79 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT--SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc--cccccceeeeeccccccccccccccccccccccccccccc
Confidence            56789999999999999998444557889999999542  2233467788899999999999999999999988889999


Q ss_pred             EeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcc
Q 012762          165 TEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       165 ~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~  244 (457)
                      |||+.+|+|.+++.......+++..+..++.||+.||.|||+++++|+||+++|||++.++.+||+|||++.........
T Consensus        80 ~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~  159 (259)
T PF07714_consen   80 MEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKY  159 (259)
T ss_dssp             EE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998875678999999999999999999999999999999999999999999999999997654211110


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                      .                                                                    ......+...|
T Consensus       160 ~--------------------------------------------------------------------~~~~~~~~~~~  171 (259)
T PF07714_consen  160 K--------------------------------------------------------------------NDSSQQLPLRY  171 (259)
T ss_dssp             E--------------------------------------------------------------------ESTTSESGGGG
T ss_pred             c--------------------------------------------------------------------ccccccccccc
Confidence            0                                                                    00012367789


Q ss_pred             cCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCC
Q 012762          325 LAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRM  403 (457)
Q Consensus       325 ~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rp  403 (457)
                      +|||++.+..++.++||||||+++|||++ |+.||...........+ ......+....++..+.++|.+||..||++||
T Consensus       172 ~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RP  250 (259)
T PF07714_consen  172 LAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKL-KQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRP  250 (259)
T ss_dssp             S-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHH-HTTEETTSBTTSBHHHHHHHHHHT-SSGGGS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccceeccchhHHHHHHHHHHcCCChhhCc
Confidence            99999998889999999999999999999 78999988777666666 44445555566899999999999999999999


Q ss_pred             CCCcChHHHhc
Q 012762          404 GSKMGATAIKR  414 (457)
Q Consensus       404 s~~~~~~~ll~  414 (457)
                      +    +.+|++
T Consensus       251 s----~~~i~~  257 (259)
T PF07714_consen  251 S----FQEILQ  257 (259)
T ss_dssp             -----HHHHHH
T ss_pred             C----HHHHHh
Confidence            9    888864

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.6e-42  Score=325.87  Aligned_cols=252  Identities=23%  Similarity=0.340  Sum_probs=208.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +..+|++.+.||+|+||.||+|.++     .+..+|+|++.+...    ....+..|++++++++|+||+++++++...+
T Consensus         2 ~~~~~~~~~~lg~G~~~~v~~~~~~-----~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05059           2 DPSELTFLKELGSGQFGVVHLGKWR-----GKIDVAIKMIREGAM----SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQR   72 (256)
T ss_pred             ChHHcchhhhhccCCCceEEEeEec-----CCccEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC
Confidence            3457999999999999999999875     456799999865432    2345677999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++.... ..+++..++.++.||+.||.|||+.||+||||||+||+++.++.+||+|||+++...
T Consensus        73 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~  151 (256)
T cd05059          73 PIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVL  151 (256)
T ss_pred             ceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecc
Confidence            9999999999999999887643 468999999999999999999999999999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      +.....                                                                     .....
T Consensus       152 ~~~~~~---------------------------------------------------------------------~~~~~  162 (256)
T cd05059         152 DDQYTS---------------------------------------------------------------------SQGTK  162 (256)
T ss_pred             cccccc---------------------------------------------------------------------cCCCC
Confidence            110000                                                                     00012


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||.+.+..++.++|||||||++|+|++ |..||...........+. .....+....++..+.+++.+||..+
T Consensus       163 ~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~  241 (256)
T cd05059         163 FPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVS-AGYRLYRPKLAPTEVYTIMYSCWHEK  241 (256)
T ss_pred             CCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHHHHHhcCC
Confidence            4568999999998889999999999999999998 899998877666555544 33344444568899999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++||+    +.++++.
T Consensus       242 p~~Rpt----~~~~l~~  254 (256)
T cd05059         242 PEDRPA----FKKLLSQ  254 (256)
T ss_pred             hhhCcC----HHHHHHH
Confidence            999999    8888764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-42  Score=330.24  Aligned_cols=257  Identities=24%  Similarity=0.423  Sum_probs=209.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC---CCCCceEEEEEEcCC
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD---HPFLPTLYATLDCPR  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~---H~nIv~l~~~~~~~~  159 (457)
                      .|++.+.||.|+||.||+|.+.    .++..||+|++....  .......+.+|+++++.++   |+||+++++++..+.
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~----~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~   75 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHV----PTGRVVALKIINLDT--PDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGP   75 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEc----CCCcEEEEEEecCCC--CchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCC
Confidence            4788899999999999999976    378899999986532  2234456778999999986   999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++..   ..+++..++.++.|++.||.|||+.||+|+||+|+||+++.++.++|+|||++....
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          76 RLWIIMEYAEGGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             EEEEEEecCCCCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            99999999999999988765   468999999999999999999999999999999999999999999999999875443


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       153 ~~~~----------------------------------------------------------------------~~~~~~  162 (277)
T cd06917         153 QNSS----------------------------------------------------------------------KRSTFV  162 (277)
T ss_pred             CCcc----------------------------------------------------------------------cccccc
Confidence            2110                                                                      001235


Q ss_pred             CCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      |+..|+|||.+.+ ..++.++|+|||||++|+|++|..||.+.........+............++.++.+++.+||..|
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  242 (277)
T cd06917         163 GTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEE  242 (277)
T ss_pred             CCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCC
Confidence            8899999999875 447899999999999999999999998765544333222221111111236789999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      |++||+    +.++++|+||+...
T Consensus       243 p~~R~~----~~~il~~~~~~~~~  262 (277)
T cd06917         243 PKERLS----AEELLKSKWIKAHS  262 (277)
T ss_pred             cccCcC----HHHHhhChHhhccc
Confidence            999999    99999999997643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=3.8e-42  Score=334.50  Aligned_cols=258  Identities=24%  Similarity=0.370  Sum_probs=212.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|.+.+.||+|+||+||++.+.    .++..||+|.+.....   .....+..|+.+++.++||||+++++++...+.
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~~v~iK~~~~~~~---~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~   90 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDV----ATGQEVAIKQMNLQQQ---PKKELIINEILVMRENKHPNIVNYLDSYLVGDE   90 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEc----CCCCEEEEEEeccccc---hHHHHHHHHHHHHhhcCCCCeeehhheeeeCCc
Confidence            468999999999999999999865    3677899999864322   334567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|..++..   ..+++..+..++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....
T Consensus        91 ~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~  167 (293)
T cd06647          91 LWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP  167 (293)
T ss_pred             EEEEEecCCCCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccc
Confidence            9999999999999988875   4588999999999999999999999999999999999999999999999998754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       168 ~~~----------------------------------------------------------------------~~~~~~~  177 (293)
T cd06647         168 EQS----------------------------------------------------------------------KRSTMVG  177 (293)
T ss_pred             ccc----------------------------------------------------------------------ccccccC
Confidence            110                                                                      0012358


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh-cccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA-RALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ++.|++||.+.+..++.++|||||||++|+|++|+.||...........+.. ....++....++..+.+++.+||..||
T Consensus       178 ~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  257 (293)
T cd06647         178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDV  257 (293)
T ss_pred             ChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence            8999999999888899999999999999999999999987654333222221 122222333467889999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ++||+    +.+++.|+||+..+
T Consensus       258 ~~Rp~----~~~il~h~~~~~~~  276 (293)
T cd06647         258 EKRGS----AKELLQHPFLKIAK  276 (293)
T ss_pred             hhCcC----HHHHhcCHHHhcCc
Confidence            99999    99999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=9.4e-42  Score=325.42  Aligned_cols=254  Identities=23%  Similarity=0.341  Sum_probs=209.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      |.+..++|++.++||+|+||.||+|.+.     .+..+|+|.+.....    ....+.+|++++++++|+||+++++++.
T Consensus         1 ~~~~~~~~~~~~~ig~g~~~~v~~~~~~-----~~~~~~~k~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~~~~   71 (260)
T cd05070           1 WEIPRESLQLIKKLGNGQFGEVWMGTWN-----GNTKVAVKTLKPGTM----SPESFLEEAQIMKKLRHDKLVQLYAVVS   71 (260)
T ss_pred             CCCchHHhhhhheeccccCceEEEEEec-----CCceeEEEEecCCCC----CHHHHHHHHHHHHhcCCCceEEEEeEEC
Confidence            3466778999999999999999999764     456799999876432    2345788999999999999999999885


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                       ....|+||||+.+++|.+++.......+++..++.++.|++.||.|||+.||+||||||+||+++.++.++|+|||++.
T Consensus        72 -~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~  150 (260)
T cd05070          72 -EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLAR  150 (260)
T ss_pred             -CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeee
Confidence             4568999999999999999887655678999999999999999999999999999999999999999999999999975


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       151 ~~~~~~~~~---------------------------------------------------------------------~~  161 (260)
T cd05070         151 LIEDNEYTA---------------------------------------------------------------------RQ  161 (260)
T ss_pred             eccCccccc---------------------------------------------------------------------cc
Confidence            432111000                                                                     00


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...++..|+|||++.+..++.++||||||+++|+|++ |..||.+....+....+. .....+.....+..+.+++.+||
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l  240 (260)
T cd05070         162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVE-RGYRMPCPQDCPISLHELMLQCW  240 (260)
T ss_pred             CCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHHHHc
Confidence            1135678999999988889999999999999999999 999998877666555544 33444455568889999999999


Q ss_pred             hhCCCCCCCCCcChHHHhc
Q 012762          396 VKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..||++||+    +.+++.
T Consensus       241 ~~~p~~Rpt----~~~l~~  255 (260)
T cd05070         241 KKDPEERPT----FEYLQS  255 (260)
T ss_pred             ccCcccCcC----HHHHHH
Confidence            999999999    777753

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=5.4e-42  Score=331.20  Aligned_cols=262  Identities=19%  Similarity=0.312  Sum_probs=212.8

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +...+|++.++||+|+||+||+|.+... ....+..||+|+++...  .......+..|++++..++||||+++++++..
T Consensus         2 i~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~   79 (283)
T cd05091           2 INLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKA--EGPLREEFKHEAMMRSRLQHPNIVCLLGVVTK   79 (283)
T ss_pred             CCHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCC--CHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC
Confidence            4566899999999999999999987542 12346789999997542  22234567889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS  223 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~  223 (457)
                      .+..++++||+.+++|..++....              ...+++..+..++.|++.||.|||++||+||||||+|||++.
T Consensus        80 ~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~  159 (283)
T cd05091          80 EQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFD  159 (283)
T ss_pred             CCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecC
Confidence            999999999999999998875321              235788889999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.+||+|||+++.........                                                          
T Consensus       160 ~~~~kl~Dfg~~~~~~~~~~~~----------------------------------------------------------  181 (283)
T cd05091         160 KLNVKISDLGLFREVYAADYYK----------------------------------------------------------  181 (283)
T ss_pred             CCceEecccccccccccchhee----------------------------------------------------------
Confidence            9999999999976543111000                                                          


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                                ......+++.|+|||++.+..++.++|||||||++|||++ |..||.+.........+..... .+....
T Consensus       182 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~-~~~~~~  250 (283)
T cd05091         182 ----------LMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQV-LPCPDD  250 (283)
T ss_pred             ----------eccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCc-CCCCCC
Confidence                      0001236788999999988889999999999999999998 8999988777766666665543 233456


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++..+.+++.+||+.||.+||+    +.+|+..
T Consensus       251 ~~~~~~~li~~cl~~~p~~RP~----~~~i~~~  279 (283)
T cd05091         251 CPAWVYTLMLECWNEFPSRRPR----FKDIHSR  279 (283)
T ss_pred             CCHHHHHHHHHHhCCCcccCCC----HHHHHHH
Confidence            8899999999999999999999    8888753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=1.5e-41  Score=329.27  Aligned_cols=260  Identities=18%  Similarity=0.311  Sum_probs=211.6

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +...+|.+.+.||+|+||+||++.+.... ...+..+|+|.+....   ......+..|++++++++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   78 (288)
T cd05093           2 IKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVE   78 (288)
T ss_pred             CchHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec
Confidence            34568999999999999999999864321 2345678999986532   2345668889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQP-----------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~-----------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~  226 (457)
                      .+..|+||||+++++|.+++....           ...+++..++.++.||+.||+|||++|++||||||+|||++.++.
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~  158 (288)
T cd05093          79 GDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL  158 (288)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCc
Confidence            999999999999999999887542           135899999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      ++|+|||++..........                                                             
T Consensus       159 ~kl~dfg~~~~~~~~~~~~-------------------------------------------------------------  177 (288)
T cd05093         159 VKIGDFGMSRDVYSTDYYR-------------------------------------------------------------  177 (288)
T ss_pred             EEeccCCccccccCCceee-------------------------------------------------------------
Confidence            9999999976432110000                                                             


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                             ......++..|+|||++.+..++.++|||||||++|+|++ |..||...........+...... +....++.
T Consensus       178 -------~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~-~~~~~~~~  249 (288)
T cd05093         178 -------VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVL-QRPRTCPK  249 (288)
T ss_pred             -------cCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcC-CCCCCCCH
Confidence                   0001236788999999998889999999999999999998 99999887776666666554432 22335788


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++.+|+.+||+.||.+||+    +.+++.
T Consensus       250 ~l~~li~~~l~~~p~~Rpt----~~~v~~  274 (288)
T cd05093         250 EVYDLMLGCWQREPHMRLN----IKEIHS  274 (288)
T ss_pred             HHHHHHHHHccCChhhCCC----HHHHHH
Confidence            9999999999999999999    777743

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=8.7e-42  Score=334.74  Aligned_cols=262  Identities=24%  Similarity=0.312  Sum_probs=203.2

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--Cc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--RW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~  160 (457)
                      +|.+.++||+|+||.||+|.++..  ..+..||+|++.............+.+|+++++.++||||+++++++...  ..
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~--~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNG--KDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKS   78 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCC--CCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCce
Confidence            488999999999999999998631  26789999999764322233445667799999999999999999999888  78


Q ss_pred             EEEEEeecCCCChHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc----CCCEEEeccC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQP---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS----DGHIMLTDFD  233 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~---~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~----~~~vkl~DFG  233 (457)
                      +|+||||++ ++|..++....   ...+++..++.++.||+.||.|||+.+|+||||||+|||++.    ++.+||+|||
T Consensus        79 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg  157 (316)
T cd07842          79 VYLLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLG  157 (316)
T ss_pred             EEEEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCc
Confidence            999999995 56766664322   236899999999999999999999999999999999999999    8999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.........                                                                   ..
T Consensus       158 ~~~~~~~~~~~-------------------------------------------------------------------~~  170 (316)
T cd07842         158 LARLFNAPLKP-------------------------------------------------------------------LA  170 (316)
T ss_pred             cccccCCCccc-------------------------------------------------------------------cc
Confidence            98654321100                                                                   00


Q ss_pred             ccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHH---------HHHHHHhc----------
Q 012762          314 RSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL---------TLANVVAR----------  373 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~---------~~~~~~~~----------  373 (457)
                      ......++..|+|||++.+. .++.++|||||||++|+|++|+.||.+.....         .+..++..          
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  250 (316)
T cd07842         171 DLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWP  250 (316)
T ss_pred             ccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHH
Confidence            01123588999999998764 47899999999999999999999998654322         11111110          


Q ss_pred             -------------ccCCCCC------------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          374 -------------ALEFPKE------------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       374 -------------~~~~~~~------------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                                   .......            ...+..+.+++.+||+.||++||+    +.++++||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps----~~eil~~~~f  316 (316)
T cd07842         251 DIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRIT----AEEALEHPYF  316 (316)
T ss_pred             HHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcC----HHHHhcCCCC
Confidence                         0000000            135567899999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.6e-41  Score=329.59  Aligned_cols=265  Identities=20%  Similarity=0.301  Sum_probs=214.6

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||.||++.++... ......+|+|++....  .......+.+|+++++++ +|+||+++++
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~   83 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLG   83 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCC--CHHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            45667789999999999999999999876433 1244689999987542  122345677899999999 8999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCe
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQ--------------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV  219 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~--------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NI  219 (457)
                      ++..++..|+||||+.+++|..++...              ....+++..++.++.||+.||.|||+.||+||||||+||
T Consensus        84 ~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Ni  163 (293)
T cd05053          84 VCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNV  163 (293)
T ss_pred             EEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeE
Confidence            999999999999999999999988652              245689999999999999999999999999999999999


Q ss_pred             EEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          220 LVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       220 ll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                      |++.++.+||+|||+++..........                                                     
T Consensus       164 l~~~~~~~kL~Dfg~~~~~~~~~~~~~-----------------------------------------------------  190 (293)
T cd05053         164 LVTEDHVMKIADFGLARDIHHIDYYRK-----------------------------------------------------  190 (293)
T ss_pred             EEcCCCeEEeCccccccccccccceec-----------------------------------------------------
Confidence            999999999999999865432111000                                                     


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCC
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFP  378 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~  378 (457)
                                     .....++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+... ....
T Consensus       191 ---------------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~  254 (293)
T cd05053         191 ---------------TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEG-YRME  254 (293)
T ss_pred             ---------------cCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcC-CcCC
Confidence                           001125678999999988889999999999999999997 99999887666555544433 3334


Q ss_pred             CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       379 ~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ....++.++.+|+.+||..||++||+    +.+++++
T Consensus       255 ~~~~~~~~~~~li~~~l~~~p~~Rps----~~eil~~  287 (293)
T cd05053         255 KPQNCTQELYHLMRDCWHEVPSQRPT----FKQLVED  287 (293)
T ss_pred             CCCCCCHHHHHHHHHHcccCcccCcC----HHHHHHH
Confidence            44467889999999999999999999    8888764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.5e-43  Score=325.23  Aligned_cols=267  Identities=25%  Similarity=0.351  Sum_probs=208.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-CC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-PR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-~~  159 (457)
                      +..|+++..||+|.||.||+|.-+..+....+.||||.++..+... .......+|+.+++.++|+||+.+..+|.. +.
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~t-GiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGT-GISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCC-CcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            3579999999999999999996554433334589999987653221 233456679999999999999999999877 78


Q ss_pred             cEEEEEeecCCCChHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC----CCEEEecc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD----GHIMLTDF  232 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~---~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~----~~vkl~DF  232 (457)
                      .++|++||. .-+|..+++.+   ..+.++...++.++.||+.|+.|||++.|+||||||.||||..+    |.|||+||
T Consensus       102 ~v~l~fdYA-EhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDl  180 (438)
T KOG0666|consen  102 KVWLLFDYA-EHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADL  180 (438)
T ss_pred             eEEEEehhh-hhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecc
Confidence            899999999 55777777654   23568999999999999999999999999999999999999988    89999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++.+.++--...                                                                  
T Consensus       181 GlaR~~~~plkpl~------------------------------------------------------------------  194 (438)
T KOG0666|consen  181 GLARLFNNPLKPLA------------------------------------------------------------------  194 (438)
T ss_pred             cHHHHhhccccccc------------------------------------------------------------------
Confidence            99988764322110                                                                  


Q ss_pred             cccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChH---------HHHHHHHhcccCCCCCCC
Q 012762          313 VRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------LTLANVVARALEFPKEPS  382 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------~~~~~~~~~~~~~~~~~~  382 (457)
                       .....+-|.+|+|||.+.|.. |+.+.|||++|||+.||++-++.|.+....         +.+.+|.. .+..|....
T Consensus       195 -s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~-vLG~Pt~~~  272 (438)
T KOG0666|consen  195 -SLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFE-VLGTPTDKD  272 (438)
T ss_pred             -cCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHH-HcCCCcccc
Confidence             011346799999999999986 899999999999999999999999764321         12233332 122222111


Q ss_pred             C------------------------------------ChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          383 V------------------------------------PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       383 ~------------------------------------~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      +                                    ++...+|+.+||.+||-+|.+    +++.|+|+||...
T Consensus       273 Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIt----a~qAleh~yF~~d  343 (438)
T KOG0666|consen  273 WPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRIT----AEQALEHPYFTED  343 (438)
T ss_pred             chhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhcc----HHHHhcccccccC
Confidence            1                                    234779999999999999999    9999999999864

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=7e-42  Score=327.32  Aligned_cols=255  Identities=24%  Similarity=0.354  Sum_probs=207.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||.|+||.||+|.++    .++..||||.+.............+..|+++++.++|+||+++++++..++..
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~----~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~   77 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCL----LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL   77 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeec----CCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeE
Confidence            57999999999999999999976    37889999988765544444556778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ++||||+++++|..++...  ....+++..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++....
T Consensus        78 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd08229          78 NIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccc
Confidence            9999999999999888642  23568999999999999999999999999999999999999999999999999875442


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       158 ~~~~~----------------------------------------------------------------------~~~~~  167 (267)
T cd08229         158 SKTTA----------------------------------------------------------------------AHSLV  167 (267)
T ss_pred             cCCcc----------------------------------------------------------------------ccccc
Confidence            11100                                                                      01235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--LTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      |+..|+|||++.+..++.++||||||+++|+|++|..||.+....  .....+............++..+.+++.+||..
T Consensus       168 ~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  247 (267)
T cd08229         168 GTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINP  247 (267)
T ss_pred             CCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCC
Confidence            889999999999888999999999999999999999999765432  223333322222112234778999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++||+    +.+|++
T Consensus       248 ~p~~Rpt----~~~i~~  260 (267)
T cd08229         248 DPEKRPD----ITYVYD  260 (267)
T ss_pred             CcccCCC----HHHHHH
Confidence            9999999    776543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=9.9e-42  Score=327.14  Aligned_cols=247  Identities=27%  Similarity=0.466  Sum_probs=198.3

Q ss_pred             CceeEEEe--cccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           83 DLRFVHRL--GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        83 ~~~~~~~L--G~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      +|.+.+.+  |+|+||.||++..+    .+++.+|+|++.+.....        .|+.+...+ +|+||+++++++..++
T Consensus        15 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~~~~~k~~~~~~~~~--------~e~~~~~~~~~h~~iv~~~~~~~~~~   82 (267)
T PHA03390         15 NCEIVKKLKLIDGKFGKVSVLKHK----PTQKLFVQKIIKAKNFNA--------IEPMVHQLMKDNPNFIKLYYSVTTLK   82 (267)
T ss_pred             hhccccceeecCCCceEEEEEEEc----CCCcEEEEEEEehhhcch--------hhHHHHHHhhcCCCEEEEEEEEecCC
Confidence            46666555  99999999999876    478899999987643211        123333222 7999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCCcCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKG  238 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~  238 (457)
                      ..|+||||+++++|..++...  ..+++..++.++.||+.||.|||+.|++||||||+||+++.++ .++|+|||++...
T Consensus        83 ~~~iv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~  160 (267)
T PHA03390         83 GHVLIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKII  160 (267)
T ss_pred             eeEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceec
Confidence            999999999999999998775  4799999999999999999999999999999999999999988 9999999987533


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ...                                                                          ...
T Consensus       161 ~~~--------------------------------------------------------------------------~~~  166 (267)
T PHA03390        161 GTP--------------------------------------------------------------------------SCY  166 (267)
T ss_pred             CCC--------------------------------------------------------------------------ccC
Confidence            210                                                                          012


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHH-HHHHhc-ccCCCCCCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL-ANVVAR-ALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .|+..|+|||++.+..++.++|||||||++|+|++|..||......... ...... ....+....++..+.++|.+||+
T Consensus       167 ~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  246 (267)
T PHA03390        167 DGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLK  246 (267)
T ss_pred             CCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhc
Confidence            4889999999999988999999999999999999999999865433221 111111 11222333588999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||.+|++.   ++++|+||||+.
T Consensus       247 ~~p~~R~~~---~~~~l~h~~~~~  267 (267)
T PHA03390        247 YNINYRLTN---YNEIIKHPFLKI  267 (267)
T ss_pred             cChhhCCch---HHHHhcCCcccC
Confidence            999999962   699999999973

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.8e-41  Score=327.76  Aligned_cols=255  Identities=19%  Similarity=0.285  Sum_probs=201.4

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--CcE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--RWS  161 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~~  161 (457)
                      |++++.||+|+||+||++........++..||+|+++...  .......+.+|+++|++++||||+++++++...  ..+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKREC--GQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL   83 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEecccc--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence            4999999999999999987655555678899999986542  122345677899999999999999999987653  468


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+.+++|.+++..   ..+++..++.++.|++.||.|||++||+||||||+|||++.++.++|+|||++......
T Consensus        84 ~lv~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  160 (283)
T cd05080          84 QLIMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG  160 (283)
T ss_pred             EEEecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCc
Confidence            999999999999998876   45999999999999999999999999999999999999999999999999997654321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ......                                                                   .....++
T Consensus       161 ~~~~~~-------------------------------------------------------------------~~~~~~~  173 (283)
T cd05080         161 HEYYRV-------------------------------------------------------------------REDGDSP  173 (283)
T ss_pred             chhhcc-------------------------------------------------------------------CCCCCCC
Confidence            100000                                                                   0011256


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--------------HHHHHHHhcccCCCCCCCCChHH
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--------------LTLANVVARALEFPKEPSVPGPA  387 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  387 (457)
                      ..|+|||++.+..++.++|||||||++|||++|..||......              ......+......+....++..+
T Consensus       174 ~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T cd05080         174 VFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEV  253 (283)
T ss_pred             ceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHH
Confidence            6799999999888999999999999999999999998653321              11111222223333345678899


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .+++.+||..||++||+    +++++.
T Consensus       254 ~~li~~cl~~~p~~Rps----~~~i~~  276 (283)
T cd05080         254 YILMKNCWETEAKFRPT----FRSLIP  276 (283)
T ss_pred             HHHHHHHhccChhhCCC----HHHHHH
Confidence            99999999999999999    777764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-42  Score=338.27  Aligned_cols=259  Identities=23%  Similarity=0.373  Sum_probs=203.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC---
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP---  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~---  158 (457)
                      ++|++.++||+|+||.||+|.+.    .+|+.||+|++....  .......+..|++++++++|+||+++++++...   
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~   78 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHK----PTGVKVAIKKISPFE--HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFE   78 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEc----CCCCeEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCcCchhheeeccccc
Confidence            58999999999999999999876    478899999986421  223445677799999999999999999987544   


Q ss_pred             --CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          159 --RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       159 --~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                        ...|+||||+ +++|..++..   ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.
T Consensus        79 ~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~  154 (336)
T cd07849          79 SFNDVYIVQELM-ETDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             ccceEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECccccee
Confidence              3579999999 5688777654   569999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                   ....
T Consensus       155 ~~~~~~~~~-------------------------------------------------------------------~~~~  167 (336)
T cd07849         155 IADPEHDHT-------------------------------------------------------------------GFLT  167 (336)
T ss_pred             ecccccccc-------------------------------------------------------------------CCcC
Confidence            442110000                                                                   0001


Q ss_pred             cccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc---------------------
Q 012762          317 SFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA---------------------  374 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~---------------------  374 (457)
                      ...||..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.........+....                     
T Consensus       168 ~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (336)
T cd07849         168 EYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIK  247 (336)
T ss_pred             CcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHh
Confidence            2368999999998765 458999999999999999999999998755433222221100                     


Q ss_pred             -cCCC-------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          375 -LEFP-------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       375 -~~~~-------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                       ....       ..+..+.++.++|.+||..||++||+    +.++++||||+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~e~l~hp~~~~~  298 (336)
T cd07849         248 SLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRIT----VEEALAHPYLEQY  298 (336)
T ss_pred             hcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcC----HHHHhcCcccccc
Confidence             0000       01235678999999999999999999    9999999999964

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=2.3e-42  Score=334.63  Aligned_cols=263  Identities=24%  Similarity=0.330  Sum_probs=208.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~  159 (457)
                      .++|...++||+|+||.||++.+.    .+++.||+|.+.+....  .....+..|+.++.++. |+||+++++++..++
T Consensus         3 ~~~~~~~~~lg~G~~g~vy~~~~~----~~~~~~aiK~~~~~~~~--~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~   76 (288)
T cd06616           3 AEDLKDLGEIGRGAFGTVNKMLHK----PSGTIMAVKRIRSTVDE--KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREG   76 (288)
T ss_pred             HHHhHHHHHhCCCCceEEEEEEEC----CCCCEEEEEEehhccCh--HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCC
Confidence            457888899999999999999876    47889999998754322  34556778999999985 999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHH---hCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQ---RQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~---~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..+++|||+ +++|..+..   ......+++..+..++.|++.||+|||+. +|+||||||+|||++.++.++|+|||++
T Consensus        77 ~~~~~~e~~-~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  155 (288)
T cd06616          77 DCWICMELM-DISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGIS  155 (288)
T ss_pred             cEEEEEecc-cCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchh
Confidence            999999998 556654432   22346799999999999999999999974 9999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                       .
T Consensus       156 ~~~~~~~~-----------------------------------------------------------------------~  164 (288)
T cd06616         156 GQLVDSIA-----------------------------------------------------------------------K  164 (288)
T ss_pred             HHhccCCc-----------------------------------------------------------------------c
Confidence            54321100                                                                       0


Q ss_pred             ccccCCCCccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhccc-CCC--CCCCCChHHH
Q 012762          316 MSFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARAL-EFP--KEPSVPGPAK  388 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~  388 (457)
                      ....|+..|+|||++.+.   .++.++|||||||++|+|++|+.||...... .....+..... ..+  ....++.++.
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (288)
T cd06616         165 TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFV  244 (288)
T ss_pred             ccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHH
Confidence            012488899999999876   5899999999999999999999999765421 12222222111 111  1224788999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      +|+.+||+.||++||+    +++|++||||+...|..
T Consensus       245 ~li~~~l~~~p~~Rpt----~~~i~~~~~~~~~~~~~  277 (288)
T cd06616         245 NFINLCLIKDESKRPK----YKELLEHPFIKDYEERN  277 (288)
T ss_pred             HHHHHHccCChhhCcC----HHHHhcChhhhchhhcc
Confidence            9999999999999999    99999999999876643

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.1e-42  Score=335.13  Aligned_cols=257  Identities=25%  Similarity=0.362  Sum_probs=211.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|+..+.||+|+||.||+|.+.    .++..||+|++.....  ......+..|++++++++|+||+++++++..+...|
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   78 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDN----RTKEVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLW   78 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEc----CCCeEEEEEEeccccc--hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceE
Confidence            4777889999999999999876    3678999999865422  234456788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|..++..   ..+++..++.++.||+.||.|||++|++|+||+|+||+++.++.++|+|||++.......
T Consensus        79 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06642          79 IIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             EEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcc
Confidence            99999999999888754   568999999999999999999999999999999999999999999999999875443110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       156 ~----------------------------------------------------------------------~~~~~~~~~  165 (277)
T cd06642         156 I----------------------------------------------------------------------KRNTFVGTP  165 (277)
T ss_pred             h----------------------------------------------------------------------hhhcccCcc
Confidence            0                                                                      001235888


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||++.+..++.++|||||||++|||++|..||...........+... ........++.++.+++.+||..+|++|
T Consensus       166 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~R  244 (277)
T cd06642         166 FWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKN-SPPTLEGQYSKPFKEFVEACLNKDPRFR  244 (277)
T ss_pred             cccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcC-CCCCCCcccCHHHHHHHHHHccCCcccC
Confidence            999999999888999999999999999999999999765544333332222 1111223467889999999999999999


Q ss_pred             CCCCcChHHHhcCCCCCCCCc
Q 012762          403 MGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f~~~~~  423 (457)
                      |+    +.++++||||....+
T Consensus       245 p~----~~~il~~~~~~~~~~  261 (277)
T cd06642         245 PT----AKELLKHKFITRYTK  261 (277)
T ss_pred             cC----HHHHHHhHHHHHHhh
Confidence            99    999999999986544

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-41  Score=329.30  Aligned_cols=257  Identities=27%  Similarity=0.395  Sum_probs=208.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|.++    .+++.||+|+++.... .......+..|++++++++|+||+++++++..++..
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~----~~~~~v~vK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   75 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNK----ATGEIVAIKKFKESED-DEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRL   75 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeC----CCCcEEEEehhhhhcc-cccchhHHHHHHHHHHhcCCCCeeehhheEEECCEE
Confidence            36999999999999999999876    3688999999865432 223456778899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||++++.|..+....  ..+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.+||+|||++......
T Consensus        76 ~iv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~  153 (288)
T cd07833          76 YLVFEYVERTLLELLEASP--GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             EEEEecCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCC
Confidence            9999999887776655443  55899999999999999999999999999999999999999999999999997554321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                     .......++
T Consensus       154 ~~---------------------------------------------------------------------~~~~~~~~~  164 (288)
T cd07833         154 PA---------------------------------------------------------------------SPLTDYVAT  164 (288)
T ss_pred             cc---------------------------------------------------------------------ccccCcccc
Confidence            10                                                                     001123578


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCC---
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFP---  378 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~---  378 (457)
                      ..|+|||++.+. .++.++||||||+++|+|++|+.||.+......+..+.....                   .++   
T Consensus       165 ~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd07833         165 RWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPS  244 (288)
T ss_pred             cCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCC
Confidence            899999999888 789999999999999999999999987654433332221100                   000   


Q ss_pred             --------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 --------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 --------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                              ....++.++.+||++||..||++||+    +.++++||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~il~~~~f  288 (288)
T cd07833         245 QPESLERRYPGKVSSPALDFLKACLRMDPKERLT----CDELLQHPYF  288 (288)
T ss_pred             CcHHHHHhcCCccchHHHHHHHHHhccCchhccc----HHHHhcCCCC
Confidence                    01124788999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.1e-41  Score=364.78  Aligned_cols=269  Identities=19%  Similarity=0.267  Sum_probs=205.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|++.++||+|+||+||+|.+.    .+++.||+|++............++.+|+++++.++||||+++++++.+++.
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~----~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~   76 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDP----VCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDP   76 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEEC----CCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCE
Confidence            368999999999999999999876    4788999999975433333445678889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCC---------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          161 SCLLTEFCPGGDLHVLRQRQP---------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~---------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      .|+||||++|++|.+++....         ...++...+..++.||+.||+|||++||+||||||+|||++.+|.++|+|
T Consensus        77 lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiD  156 (932)
T PRK13184         77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILD  156 (932)
T ss_pred             EEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEe
Confidence            999999999999998886421         12355677888999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++.............       .....            .                                 ....
T Consensus       157 FGLAk~i~~~~~~~~~l~-------~~~~~------------s---------------------------------~~s~  184 (932)
T PRK13184        157 WGAAIFKKLEEEDLLDID-------VDERN------------I---------------------------------CYSS  184 (932)
T ss_pred             cCcceecccccccccccc-------ccccc------------c---------------------------------cccc
Confidence            999875521110000000       00000            0                                 0000


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH-HHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  390 (457)
                      .......+||+.|||||++.+..++.++|||||||++|||++|..||........... .+...........+++.+.++
T Consensus       185 ~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~L  264 (932)
T PRK13184        185 MTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQI  264 (932)
T ss_pred             cccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHH
Confidence            0011235799999999999999999999999999999999999999987544332221 111111122223578899999


Q ss_pred             HHHHhhhCCCCCCCC
Q 012762          391 IAQLLVKDPTRRMGS  405 (457)
Q Consensus       391 l~~~L~~dP~~Rps~  405 (457)
                      +.+||..||++|++.
T Consensus       265 I~rcL~~DP~kR~ss  279 (932)
T PRK13184        265 AMKALAVDPAERYSS  279 (932)
T ss_pred             HHHHccCChhhCcCH
Confidence            999999999999883

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2e-41  Score=324.54  Aligned_cols=259  Identities=21%  Similarity=0.306  Sum_probs=210.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||.||+|.++... ..+..+|+|.++...  .......+..|++++++++||||+++++++..++
T Consensus         2 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (267)
T cd05066           2 DASCIKIEKVIGAGEFGEVCSGRLKLPG-KREIPVAIKTLKAGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK   78 (267)
T ss_pred             CHHHeEeeeeecccCCCceEEEEEecCC-CCceEEEEEECCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence            3468999999999999999999876321 134579999986532  2234567788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|..++.... ..+++..+..++.|++.||.|||++|++||||||+|||++.++.++|+|||++....
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~  157 (267)
T cd05066          79 PVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  157 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccc
Confidence            9999999999999999987643 568999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .......                                                                   ......
T Consensus       158 ~~~~~~~-------------------------------------------------------------------~~~~~~  170 (267)
T cd05066         158 DDPEAAY-------------------------------------------------------------------TTRGGK  170 (267)
T ss_pred             cccceee-------------------------------------------------------------------ecCCCc
Confidence            2111000                                                                   000112


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++|+|||||++||+++ |..||...........+.. ....+....++..+.+++.+||+.+
T Consensus       171 ~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~  249 (267)
T cd05066         171 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEE-GYRLPAPMDCPAALHQLMLDCWQKD  249 (267)
T ss_pred             cceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhC-CCcCCCCCCCCHHHHHHHHHHcccC
Confidence            4568999999998889999999999999999886 9999988766655555443 3455655668899999999999999


Q ss_pred             CCCCCCCCcChHHHhc
Q 012762          399 PTRRMGSKMGATAIKR  414 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~  414 (457)
                      |++||+    +.++++
T Consensus       250 p~~Rp~----~~~i~~  261 (267)
T cd05066         250 RNERPK----FEQIVS  261 (267)
T ss_pred             chhCCC----HHHHHH
Confidence            999999    777754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=8e-42  Score=331.80  Aligned_cols=257  Identities=25%  Similarity=0.369  Sum_probs=207.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++.+.||.|+||.||+|.++    .+++.+|+|.++..... ......+.+|++++++++||||+++++++...  
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~   78 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDK----KTGEIVALKKLKMEKEK-EGFPITSLREINILLKLQHPNIVTVKEVVVGSNL   78 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEEC----CCCcEEEEEEEeecccc-ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCC
Confidence            357999999999999999999886    36789999999755332 23334566799999999999999999998877  


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||+. ++|..++.... ..+++..++.++.||+.||.|||+.|++|+||||+|||++.++.++|+|||++...
T Consensus        79 ~~~~lv~e~~~-~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~  156 (293)
T cd07843          79 DKIYMVMEYVE-HDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREY  156 (293)
T ss_pred             CcEEEEehhcC-cCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeec
Confidence            88999999995 59988887643 46899999999999999999999999999999999999999999999999987644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                      .....
T Consensus       157 ~~~~~----------------------------------------------------------------------~~~~~  166 (293)
T cd07843         157 GSPLK----------------------------------------------------------------------PYTQL  166 (293)
T ss_pred             cCCcc----------------------------------------------------------------------ccccc
Confidence            32100                                                                      00012


Q ss_pred             cCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----------CC--------
Q 012762          319 VGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----------FP--------  378 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----------~~--------  378 (457)
                      .++..|+|||++.+.. ++.++|||||||++|+|++|..||........+.++......           ++        
T Consensus       167 ~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (293)
T cd07843         167 VVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFT  246 (293)
T ss_pred             cccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccc
Confidence            4788999999997654 688999999999999999999999887665554443321100           00        


Q ss_pred             ---------CCCC--CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ---------KEPS--VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ---------~~~~--~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                               ..+.  +++.+.++|++||+.||++||+    +.|++.||||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t----~~ell~~~~f  293 (293)
T cd07843         247 KYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRIS----AEDALKHPYF  293 (293)
T ss_pred             cccchhhhccccccCCChHHHHHHHHHhccCccccCC----HHHHhcCCCC
Confidence                     0011  4778999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.7e-41  Score=322.97  Aligned_cols=249  Identities=20%  Similarity=0.346  Sum_probs=206.1

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE-
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL-  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~-  155 (457)
                      |.+...+|++.+.||+|+||.||+|..      .+..||+|.+...     ...+.+..|+.++++++|+||+++++++ 
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~v~~~~~------~~~~~~~k~~~~~-----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~   69 (256)
T cd05082           1 WALNMKELKLLQTIGKGEFGDVMLGDY------RGNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVIV   69 (256)
T ss_pred             CCccHHhCeeeeeecccCCCeEEEEEE------cCCcEEEEEeCCC-----chHHHHHHHHHHHHhCCCCCeeeEEEEEE
Confidence            346677999999999999999999975      4667999998643     2345678899999999999999999975 


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..++..|+||||+++++|.+++.......+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++
T Consensus        70 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~  149 (256)
T cd05082          70 EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLT  149 (256)
T ss_pred             cCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccc
Confidence            45567899999999999999988765556899999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                        
T Consensus       150 ~~~~~~~~------------------------------------------------------------------------  157 (256)
T cd05082         150 KEASSTQD------------------------------------------------------------------------  157 (256)
T ss_pred             eeccccCC------------------------------------------------------------------------
Confidence            54321100                                                                        


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                       ...++..|+|||++.+..++.++|||||||++|||++ |+.||...........+.. .........++..+.+++.+|
T Consensus       158 -~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~  235 (256)
T cd05082         158 -TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GYKMDAPDGCPPVVYDVMKQC  235 (256)
T ss_pred             -CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHH
Confidence             1124567999999998889999999999999999997 9999987665555444432 333333456889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |..||++||+    +.++++
T Consensus       236 l~~~p~~Rpt----~~~l~~  251 (256)
T cd05082         236 WHLDAATRPS----FLQLRE  251 (256)
T ss_pred             hcCChhhCcC----HHHHHH
Confidence            9999999999    888765

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.6e-41  Score=327.25  Aligned_cols=251  Identities=26%  Similarity=0.407  Sum_probs=199.7

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcC--Cc
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCP--RW  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~--~~  160 (457)
                      |++.++||+|+||.||+|.++    .++..||+|++++... . ........|+.+++++. |+||+++++++.++  +.
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~----~~~~~~aik~~~~~~~-~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~   74 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSR----KTGKYYAIKCMKKHFK-S-LEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGR   74 (282)
T ss_pred             CceEeeccccccceEEEEEEc----CCCcEEEEEEehhccC-C-chhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCc
Confidence            678999999999999999876    3788999999865421 1 22223446888888884 99999999999887  88


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .++||||++ ++|.+++.... ..+++..++.++.||+.||.|||+.|++||||||+||+++. +.+||+|||++.....
T Consensus        75 ~~lv~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~  151 (282)
T cd07831          75 LALVFELMD-MNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYS  151 (282)
T ss_pred             EEEEEecCC-ccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEeccccccccc
Confidence            999999995 57776665532 56899999999999999999999999999999999999999 9999999999754421


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                       .....+
T Consensus       152 ~~~-----------------------------------------------------------------------~~~~~~  160 (282)
T cd07831         152 KPP-----------------------------------------------------------------------YTEYIS  160 (282)
T ss_pred             CCC-----------------------------------------------------------------------cCCCCC
Confidence            100                                                                       012347


Q ss_pred             CCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc------------------cCCCC--
Q 012762          321 THEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA------------------LEFPK--  379 (457)
Q Consensus       321 t~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~------------------~~~~~--  379 (457)
                      +..|+|||++.. ..++.++|||||||++|||++|..||.+.+..+....+....                  +.++.  
T Consensus       161 ~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (282)
T cd07831         161 TRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKK  240 (282)
T ss_pred             CcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccc
Confidence            889999998754 446889999999999999999999998876544443332211                  11111  


Q ss_pred             -------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 -------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 -------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                             ...++.++.++|.+||..||++||+    ++++++||||
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~----~~~~l~~~~~  282 (282)
T cd07831         241 GTGLRKLLPNASAEGLDLLKKLLAYDPDERIT----AKQALRHPYF  282 (282)
T ss_pred             cccHHHHcccccHHHHHHHHHHhccCcccccC----HHHHhhCCCC
Confidence                   1245788999999999999999999    9999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1e-41  Score=344.79  Aligned_cols=266  Identities=20%  Similarity=0.269  Sum_probs=216.1

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~  153 (457)
                      .+.+..++|.+.++||+|+||.||+|+++.. ....+..||+|+++...  .......+..|+++|.++. ||||+++++
T Consensus        31 ~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~--~~~~~~~~~~E~~~l~~l~~H~niv~~~~  108 (401)
T cd05107          31 AWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA--RSSEKQALMSELKIMSHLGPHLNIVNLLG  108 (401)
T ss_pred             cceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC--ChhHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            4677778899999999999999999997632 22456789999997532  2223446778999999997 999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCC---------------------------------------------------
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPD---------------------------------------------------  182 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~---------------------------------------------------  182 (457)
                      ++...+..|+|||||.+|+|.++++....                                                   
T Consensus       109 ~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (401)
T cd05107         109 ACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESAD  188 (401)
T ss_pred             EEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccC
Confidence            99999999999999999999998875321                                                   


Q ss_pred             ---------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          183 ---------------------------------------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       183 ---------------------------------------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                                                                   ..+++..++.++.||+.||.|||+.+|+||||||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~  268 (401)
T cd05107         189 YVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAAR  268 (401)
T ss_pred             ccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcc
Confidence                                                         23567778889999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||++.++.+||+|||+++........                                                     
T Consensus       269 NiLl~~~~~~kL~DfGla~~~~~~~~~-----------------------------------------------------  295 (401)
T cd05107         269 NVLICEGKLVKICDFGLARDIMRDSNY-----------------------------------------------------  295 (401)
T ss_pred             eEEEeCCCEEEEEecCcceeccccccc-----------------------------------------------------
Confidence            999999999999999997643211000                                                     


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccC
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALE  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  376 (457)
                                     .......++..|+|||++.+..++.++|||||||++|||++ |..||......+.....+.....
T Consensus       296 ---------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~~  360 (401)
T cd05107         296 ---------------ISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYR  360 (401)
T ss_pred             ---------------ccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCCC
Confidence                           00012347889999999998889999999999999999998 89999876666666565655555


Q ss_pred             CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       377 ~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+.+..++.++.+|+.+||..||++||+    +.+|++.
T Consensus       361 ~~~p~~~~~~l~~li~~cl~~~P~~RPs----~~ell~~  395 (401)
T cd05107         361 MAKPAHASDEIYEIMQKCWEEKFEIRPD----FSQLVHL  395 (401)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            5555568899999999999999999999    8887753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.7e-41  Score=329.78  Aligned_cols=262  Identities=21%  Similarity=0.329  Sum_probs=210.6

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC------------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS------------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP  146 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~------------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~  146 (457)
                      +..++|+++++||+|+||.||+|.+....            ...+..||+|++.....  ......+.+|++++++++|+
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~--~~~~~~~~~e~~~l~~l~~~   79 (296)
T cd05051           2 FPRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS--DNAREDFLKEVKILSRLSDP   79 (296)
T ss_pred             CchhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC--HHHHHHHHHHHHHHHhcCCC
Confidence            34568999999999999999999875321            12345789999875432  23456788899999999999


Q ss_pred             CCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCC---------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP---------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       147 nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~---------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      ||+++++++..++..++||||+.+++|..++....         ...+++..++.++.|++.||.|||+.||+||||||+
T Consensus        80 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~  159 (296)
T cd05051          80 NIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATR  159 (296)
T ss_pred             CEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchh
Confidence            99999999999999999999999999999887642         126899999999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      ||+++.++.++|+|||++..........                                                    
T Consensus       160 Nili~~~~~~~l~dfg~~~~~~~~~~~~----------------------------------------------------  187 (296)
T cd05051         160 NCLVGKNYTIKIADFGMSRNLYSSDYYR----------------------------------------------------  187 (296)
T ss_pred             ceeecCCCceEEccccceeecccCccee----------------------------------------------------
Confidence            9999999999999999875432111000                                                    


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc--CCCCCCCCChHHHHHHHHhc--
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY--GTTPFKGIDHELTLANVVAR--  373 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt--G~~Pf~~~~~~~~~~~~~~~--  373 (457)
                                      ......++..|+|||++.+..++.++|||||||++|||++  |..||........+......  
T Consensus       188 ----------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~  251 (296)
T cd05051         188 ----------------VQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFR  251 (296)
T ss_pred             ----------------ecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccc
Confidence                            0002246788999999998889999999999999999998  78899877666665554432  


Q ss_pred             ----ccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          374 ----ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       374 ----~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                          ....+....++.++.+++.+||+.||++||+    +.+|++
T Consensus       252 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt----~~el~~  292 (296)
T cd05051         252 DDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPT----FREIHL  292 (296)
T ss_pred             cccccccCCCccCCCHHHHHHHHHHhccChhcCCC----HHHHHH
Confidence                1122333456789999999999999999999    888865

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.8e-41  Score=326.72  Aligned_cols=261  Identities=19%  Similarity=0.305  Sum_probs=209.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ..++|.+.+.||+|+||.||+|.+...+ ...+..||+|.+....  .......+..|+.+++.++|+||+++++++...
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~   81 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC--SEQDESDFLMEALIMSKFNHQNIVRLIGVSFER   81 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence            3467999999999999999999986321 1256789999886432  223345677899999999999999999999998


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEe
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPD-----KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLT  230 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~-----~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~  230 (457)
                      +..|+||||++|++|..++.....     ..+++..++.++.||+.||.|||+++++||||||+|||++.++   .+||+
T Consensus        82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEec
Confidence            999999999999999999876532     2589999999999999999999999999999999999998654   59999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.........                                                                 
T Consensus       162 dfg~~~~~~~~~~~~-----------------------------------------------------------------  176 (277)
T cd05036         162 DFGMARDIYRASYYR-----------------------------------------------------------------  176 (277)
T ss_pred             cCccccccCCcccee-----------------------------------------------------------------
Confidence            999986542111000                                                                 


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                         ......++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+. ..........++..+.+
T Consensus       177 ---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  252 (277)
T cd05036         177 ---KGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVT-GGGRLDPPKGCPGPVYR  252 (277)
T ss_pred             ---cCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH-cCCcCCCCCCCCHHHHH
Confidence               0001124568999999998889999999999999999996 999998877665544433 33333334568899999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++.+||+.||++||+    +.+|++|
T Consensus       253 ~i~~cl~~~p~~Rps----~~~vl~~  274 (277)
T cd05036         253 IMTDCWQHTPEDRPN----FATILER  274 (277)
T ss_pred             HHHHHcCCCcccCcC----HHHHHHH
Confidence            999999999999999    9999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=2.7e-41  Score=325.73  Aligned_cols=259  Identities=21%  Similarity=0.293  Sum_probs=208.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +...+|++.++||+|+||+||+|.+..........||+|++....  .......+..|+.+++.++|+||+++++++...
T Consensus         4 l~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   81 (279)
T cd05109           4 LKETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT--SPKANKEILDEAYVMAGVGSPYVCRLLGICLTS   81 (279)
T ss_pred             cchhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC--CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC
Confidence            456789999999999999999999775333334468999986542  223455677899999999999999999998754


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                       ..+++|||+++|+|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        82 -~~~l~~~~~~~g~l~~~l~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          82 -TVQLVTQLMPYGCLLDYVREN-KDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             -CcEEEEEcCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeec
Confidence             578999999999999888764 256899999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                    .....
T Consensus       160 ~~~~~~~--------------------------------------------------------------------~~~~~  171 (279)
T cd05109         160 DIDETEY--------------------------------------------------------------------HADGG  171 (279)
T ss_pred             cccccee--------------------------------------------------------------------ecCCC
Confidence            3211100                                                                    00011


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||++.+..++.++|||||||++|||++ |..||.......... .+......+....++.++.+++.+||..
T Consensus       172 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~  250 (279)
T cd05109         172 KVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPD-LLEKGERLPQPPICTIDVYMIMVKCWMI  250 (279)
T ss_pred             ccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH-HHHCCCcCCCCccCCHHHHHHHHHHcCC
Confidence            25678999999998889999999999999999998 999998765544443 3444444444556889999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++||+    +.++++
T Consensus       251 dp~~Rp~----~~~l~~  263 (279)
T cd05109         251 DSECRPR----FRELVD  263 (279)
T ss_pred             ChhhCcC----HHHHHH
Confidence            9999999    888874

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.2e-41  Score=326.78  Aligned_cols=258  Identities=30%  Similarity=0.426  Sum_probs=207.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--C
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--R  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~  159 (457)
                      ++|...++||.|++|.||+|.+.    .+++.||+|++.....  ......+.+|++++++++|+||+++++++...  +
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   74 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLK----NTGMIFALKTITTDPN--PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSS   74 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEEC----CCCeEEEEEEEecCCc--hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCC
Confidence            46899999999999999999986    3788999999875422  23456678899999999999999999988653  4


Q ss_pred             cEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 WSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+|+||||+++++|.+++..  .....+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++..
T Consensus        75 ~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  154 (287)
T cd06621          75 SIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGE  154 (287)
T ss_pred             eEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccc
Confidence            68999999999999887654  2345689999999999999999999999999999999999999999999999998743


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                        ..
T Consensus       155 ~~~~~~------------------------------------------------------------------------~~  162 (287)
T cd06621         155 LVNSLA------------------------------------------------------------------------GT  162 (287)
T ss_pred             cccccc------------------------------------------------------------------------cc
Confidence            321100                                                                        01


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-----hHHHHHHHHhcc-cCCCCC----CCCChHH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-----HELTLANVVARA-LEFPKE----PSVPGPA  387 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-----~~~~~~~~~~~~-~~~~~~----~~~~~~~  387 (457)
                      ..++..|+|||.+.+..++.++|||||||++|+|++|..||....     ..+....+.... ..++..    ..+++.+
T Consensus       163 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (287)
T cd06621         163 FTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEF  242 (287)
T ss_pred             ccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHH
Confidence            247889999999998889999999999999999999999998652     122222222211 111111    2346789


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .++|.+||..||++||+    +.|+++||||+..
T Consensus       243 ~~li~~~l~~~p~~Rpt----~~eil~~~~~~~~  272 (287)
T cd06621         243 KDFIKQCLEKDPTRRPT----PWDMLEHPWIKAQ  272 (287)
T ss_pred             HHHHHHHcCCCcccCCC----HHHHHhCcccccc
Confidence            99999999999999999    9999999999764

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=2.9e-41  Score=322.70  Aligned_cols=255  Identities=23%  Similarity=0.348  Sum_probs=209.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||.||+|.+.    .+|+.||+|.++............+.+|++++++++|+||+++++++...+..
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~   77 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICL----LDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNEL   77 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEc----CCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeE
Confidence            57999999999999999999986    37889999999765544445567788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ++||||+++++|..++...  ....+++..++.++.||+.||.|||+.||+|+||||+||+++.++.++|+|||++....
T Consensus        78 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~  157 (267)
T cd08224          78 NIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS  157 (267)
T ss_pred             EEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeecc
Confidence            9999999999999888653  23558999999999999999999999999999999999999999999999999875442


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                      .....
T Consensus       158 ~~~~~----------------------------------------------------------------------~~~~~  167 (267)
T cd08224         158 SKTTA----------------------------------------------------------------------AHSLV  167 (267)
T ss_pred             CCCcc----------------------------------------------------------------------cceec
Confidence            11100                                                                      01235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh--HHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      |+..|+|||.+.+..++.++|||||||++|+|++|+.||.....  ......+..+.........++..+.++|.+||..
T Consensus       168 ~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~  247 (267)
T cd08224         168 GTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINP  247 (267)
T ss_pred             CCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCC
Confidence            88899999999988899999999999999999999999965432  2233333332222111225778999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      +|++||+    +.+|++
T Consensus       248 ~p~~Rp~----~~~il~  260 (267)
T cd08224         248 DPEKRPD----ISYVLQ  260 (267)
T ss_pred             CcccCCC----HHHHHH
Confidence            9999999    877764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-41  Score=322.51  Aligned_cols=255  Identities=23%  Similarity=0.337  Sum_probs=213.8

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      |++..++|++.++||+|+||+||+|.+.     .+..||+|.+.....    ....+..|+++++.++|+||+++++++.
T Consensus         1 ~~~~~~~~~i~~~ig~g~~~~v~~~~~~-----~~~~~~vK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~   71 (261)
T cd05034           1 WEIPRESLKLERKLGAGQFGEVWMGTWN-----GTTKVAVKTLKPGTM----SPEAFLQEAQIMKKLRHDKLVQLYAVCS   71 (261)
T ss_pred             CccchhheeeeeeeccCcceEEEEEEEc-----CCceEEEEEecCCcc----CHHHHHHHHHHHhhCCCCCEeeeeeeee
Confidence            3567789999999999999999999865     456799999875432    3456788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .....++||||+++++|.+++.......+++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++.
T Consensus        72 ~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~  151 (261)
T cd05034          72 EEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLAR  151 (261)
T ss_pred             cCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccce
Confidence            98999999999999999999887655679999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       152 ~~~~~~~~~---------------------------------------------------------------------~~  162 (261)
T cd05034         152 LIEDDEYTA---------------------------------------------------------------------RE  162 (261)
T ss_pred             eccchhhhh---------------------------------------------------------------------hh
Confidence            443210000                                                                     00


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...++..|+|||.+.+..++.++|||||||++|+|++ |+.||.+......+..+. ..+..+.....+..+.+++.+||
T Consensus       163 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l  241 (261)
T cd05034         163 GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVE-RGYRMPRPPNCPEELYDLMLQCW  241 (261)
T ss_pred             ccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHc
Confidence            1124678999999998889999999999999999998 999998877666665554 34445555567899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhc
Q 012762          396 VKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..||++||+    +.+++.
T Consensus       242 ~~~p~~Rp~----~~~l~~  256 (261)
T cd05034         242 DKDPEERPT----FEYLQS  256 (261)
T ss_pred             ccCcccCCC----HHHHHH
Confidence            999999999    888764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1e-41  Score=338.98  Aligned_cols=265  Identities=19%  Similarity=0.274  Sum_probs=208.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      |.+..++|++.+.||.|+||+||+|.+...+ ..+++.||||+++...  .......+.+|+++|..+ +|+||++++++
T Consensus         2 ~~~~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~~~~~   79 (343)
T cd05103           2 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGA   79 (343)
T ss_pred             cccchhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCC--ChHHHHHHHHHHHHHHhccCCccHhhhcce
Confidence            5677789999999999999999999865332 2467899999996532  123345677899999999 68999999998


Q ss_pred             EEc-CCcEEEEEeecCCCChHHHHHhCC----------------------------------------------------
Q 012762          155 LDC-PRWSCLLTEFCPGGDLHVLRQRQP----------------------------------------------------  181 (457)
Q Consensus       155 ~~~-~~~~~lV~E~~~~~sL~~~~~~~~----------------------------------------------------  181 (457)
                      +.. +...++|||||++|+|.+++....                                                    
T Consensus        80 ~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (343)
T cd05103          80 CTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLS  159 (343)
T ss_pred             eecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccc
Confidence            754 456899999999999998886531                                                    


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccc
Q 012762          182 -------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV  248 (457)
Q Consensus       182 -------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~  248 (457)
                                   ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++.........    
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~----  235 (343)
T cd05103         160 DVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDY----  235 (343)
T ss_pred             cchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcch----
Confidence                         123677888899999999999999999999999999999999999999999997543211000    


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCch
Q 012762          249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  328 (457)
                                                                                      .......++..|+|||
T Consensus       236 ----------------------------------------------------------------~~~~~~~~~~~y~aPE  251 (343)
T cd05103         236 ----------------------------------------------------------------VRKGDARLPLKWMAPE  251 (343)
T ss_pred             ----------------------------------------------------------------hhcCCCCCCcceECcH
Confidence                                                                            0000123567899999


Q ss_pred             hhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          329 IISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       329 ~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      ++.+..++.++|||||||++|+|++ |..||............+......+.....+.++.+++.+||..||++||+   
T Consensus       252 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps---  328 (343)
T cd05103         252 TIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT---  328 (343)
T ss_pred             HhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcC---
Confidence            9998889999999999999999996 999998765443344444343333333446788999999999999999999   


Q ss_pred             ChHHHhcC
Q 012762          408 GATAIKRH  415 (457)
Q Consensus       408 ~~~~ll~h  415 (457)
                       +.+|++|
T Consensus       329 -~~eil~~  335 (343)
T cd05103         329 -FSELVEH  335 (343)
T ss_pred             -HHHHHHH
Confidence             9999876

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-41  Score=321.30  Aligned_cols=259  Identities=25%  Similarity=0.407  Sum_probs=210.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhh--hhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE--LVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      .+|++.+.||+|+||.||+|.++    .++..||+|++....  .........+.+|++++++++|+||+++++++... 
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~   77 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDA----DTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE   77 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEc----CCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC
Confidence            47999999999999999999876    478899999875421  11223456778899999999999999999998664 


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       ..+++||||+++++|.+++...  ..+++..++.++.||+.||.|||+.|++|+||||+||+++.++.++|+|||+++.
T Consensus        78 ~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          78 EKKLSIFVEYMPGGSIKDQLKAY--GALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             CCEEEEEEEeCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccc
Confidence             4588999999999999888764  4588999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                   ......
T Consensus       156 ~~~~~~~-------------------------------------------------------------------~~~~~~  168 (264)
T cd06653         156 IQTICMS-------------------------------------------------------------------GTGIKS  168 (264)
T ss_pred             ccccccc-------------------------------------------------------------------Cccccc
Confidence            4211000                                                                   000112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      +.|+..|+|||++.+..++.++|+|||||++|+|++|+.||..........++.........+..+++.+.+++.+||. 
T Consensus       169 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-  247 (264)
T cd06653         169 VTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-  247 (264)
T ss_pred             cCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-
Confidence            4589999999999988899999999999999999999999987665554444443322222344578899999999999 


Q ss_pred             CCCCCCCCCcChHHHhcCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      +|..||+    +.+++.|||.
T Consensus       248 ~~~~r~~----~~~~~~~~~~  264 (264)
T cd06653         248 EEKRRPT----AEFLLRHPFV  264 (264)
T ss_pred             CcccCcc----HHHHhcCCCC
Confidence            5799999    9999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=1.8e-41  Score=327.48  Aligned_cols=255  Identities=24%  Similarity=0.379  Sum_probs=205.9

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.++||.|++|+||+|++.    .+|..||+|++.....  ......+..|++++++++|+||+++++++...+..|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   74 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNR----TTGEIVALKEIHLDAE--EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLM   74 (284)
T ss_pred             CceEeeeeccCCceEEEEEEEC----CCCeEEEEEEeccccc--ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEE
Confidence            5899999999999999999986    3788999999875432  223455667999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      +||||+. ++|..++.... ...+++..+..++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++......
T Consensus        75 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~  153 (284)
T cd07836          75 LVFEYMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIP  153 (284)
T ss_pred             EEEecCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCC
Confidence            9999996 58877776532 346899999999999999999999999999999999999999999999999987543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                      .....++
T Consensus       154 ~~~----------------------------------------------------------------------~~~~~~~  163 (284)
T cd07836         154 VNT----------------------------------------------------------------------FSNEVVT  163 (284)
T ss_pred             ccc----------------------------------------------------------------------ccccccc
Confidence            000                                                                      0012478


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc------------------CCCC---
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL------------------EFPK---  379 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~------------------~~~~---  379 (457)
                      ..|++||++.+. .++.++|||||||++|+|++|+.||.+.+..+....+.....                  ..+.   
T Consensus       164 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (284)
T cd07836         164 LWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPP  243 (284)
T ss_pred             ccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCCh
Confidence            899999998765 478899999999999999999999988765554444332100                  0000   


Q ss_pred             ------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 ------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 ------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                            .+.++..+.+++.+||+.||.+||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~----~~~~l~~~~f  284 (284)
T cd07836         244 QDLQQLFPHADPLGIDLLHRLLQLNPELRIS----AHDALQHPWF  284 (284)
T ss_pred             HHHHHHhhhcCcHHHHHHHHHhcCCcccCCC----HHHHhcCCCC
Confidence                  1235678899999999999999999    9999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=2.1e-41  Score=325.57  Aligned_cols=261  Identities=22%  Similarity=0.355  Sum_probs=216.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ..++|++++.||.|+||+||+|+++... ......||+|.+....  .......+..|+++|++++|+||+++++++...
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   80 (275)
T cd05046           3 PRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK--DENLQSEFRRELDMFRKLSHKNVVRLLGLCREA   80 (275)
T ss_pred             ChHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc--chHHHHHHHHHHHHHHhcCCcceeeeEEEECCC
Confidence            4468999999999999999999976432 2345689999986542  122456788899999999999999999999998


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCC-------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPD-------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~-------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      +..|+||||+++++|.+++.....       ..+++..+..++.||+.||.|||+.||+||||||+|||++.++.++++|
T Consensus        81 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~  160 (275)
T cd05046          81 EPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSL  160 (275)
T ss_pred             CcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcc
Confidence            999999999999999999876531       2689999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++........                                                                    
T Consensus       161 ~~~~~~~~~~~~--------------------------------------------------------------------  172 (275)
T cd05046         161 LSLSKDVYNSEY--------------------------------------------------------------------  172 (275)
T ss_pred             cccccccCcccc--------------------------------------------------------------------
Confidence            998753321100                                                                    


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                       .......++..|+|||.+.+..++.++|||||||++|+|++ |..||...........+..+....+....++..+.++
T Consensus       173 -~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  251 (275)
T cd05046         173 -YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGCPSRLYKL  251 (275)
T ss_pred             -cccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCCCHHHHHH
Confidence             00011246778999999988888999999999999999998 8999988777777777666666665556788999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.+||+.||++||+    +.+++++
T Consensus       252 i~~~l~~~p~~Rp~----~~~~l~~  272 (275)
T cd05046         252 MTRCWAVNPKDRPS----FSELVSA  272 (275)
T ss_pred             HHHHcCCCcccCCC----HHHHHHH
Confidence            99999999999999    9998864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.5e-41  Score=327.32  Aligned_cols=254  Identities=24%  Similarity=0.377  Sum_probs=211.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      -|++.++||.|+||.||+|.+.    .++..||+|++.....  ......+.+|++++++++|+||+++++++..+...|
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~----~~~~~~aiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   78 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDN----RTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLW   78 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEEC----CCCcEEEEEEeccccc--hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEE
Confidence            3778899999999999999876    3788999999865422  234466788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+.+++|..++..   ..+++..+..++.|++.+|.|||+.|++|+||||+||+++.++.++|+|||++.......
T Consensus        79 lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06641          79 IIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             EEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccch
Confidence            99999999999988765   468999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......|+.
T Consensus       156 ~----------------------------------------------------------------------~~~~~~~~~  165 (277)
T cd06641         156 I----------------------------------------------------------------------KRNTFVGTP  165 (277)
T ss_pred             h----------------------------------------------------------------------hhccccCCc
Confidence            0                                                                      001235788


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||.+.+..++.++|+|||||++|+|++|..||...........+.... .......++.++.+++.+||..||++|
T Consensus       166 ~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R  244 (277)
T cd06641         166 FWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNN-PPTLEGNYSKPLKEFVEACLNKEPSFR  244 (277)
T ss_pred             cccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCC-CCCCCcccCHHHHHHHHHHccCChhhC
Confidence            9999999988888999999999999999999999998766544444433222 112223578899999999999999999


Q ss_pred             CCCCcChHHHhcCCCCCC
Q 012762          403 MGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f~~  420 (457)
                      |+    +.++++||||..
T Consensus       245 p~----~~~~l~~~~~~~  258 (277)
T cd06641         245 PT----AKELLKHKFIVR  258 (277)
T ss_pred             cC----HHHHHhCHHHhh
Confidence            99    999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=3.1e-41  Score=321.99  Aligned_cols=253  Identities=24%  Similarity=0.316  Sum_probs=207.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|.+.++||+|+||.||+|.+.     .+..+|+|++....    .....+.+|++++++++|+||+++++++. 
T Consensus         2 ~~~~~~~~~~~~ig~g~~~~v~~~~~~-----~~~~~~lK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-   71 (260)
T cd05069           2 EIPRESLRLDVKLGQGCFGEVWMGTWN-----GTTKVAIKTLKPGT----MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-   71 (260)
T ss_pred             cCChHHeeeeeeecCcCCCeEEEEEEc-----CCceEEEEEcccCC----ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-
Confidence            455678999999999999999999875     33469999886542    23456778999999999999999999885 


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..|+||||+.+++|.+++.......+++..+..++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++..
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~  151 (260)
T cd05069          72 EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARL  151 (260)
T ss_pred             CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceE
Confidence            45688999999999999998776555689999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                     ...
T Consensus       152 ~~~~~~~~---------------------------------------------------------------------~~~  162 (260)
T cd05069         152 IEDNEYTA---------------------------------------------------------------------RQG  162 (260)
T ss_pred             ccCCcccc---------------------------------------------------------------------cCC
Confidence            42111000                                                                     001


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++|||||||++|||++ |..||.+.........+. .....+.....+..+.+++.+||.
T Consensus       163 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~  241 (260)
T cd05069         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVE-RGYRMPCPQGCPESLHELMKLCWK  241 (260)
T ss_pred             CccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCcccCHHHHHHHHHHcc
Confidence            136778999999998889999999999999999999 999998877666555544 334444445688899999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    ++++++
T Consensus       242 ~~p~~Rp~----~~~i~~  255 (260)
T cd05069         242 KDPDERPT----FEYIQS  255 (260)
T ss_pred             CCcccCcC----HHHHHH
Confidence            99999999    887765

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=2.7e-41  Score=330.23  Aligned_cols=262  Identities=27%  Similarity=0.371  Sum_probs=202.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.++||+|+||.||+|.++    .++..||+|++..... .......+.+|++++++++||||+++++++...+
T Consensus        10 ~~~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~aik~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   84 (310)
T cd07865          10 EVSKYEKLAKIGQGTFGEVFKARHK----KTKQIVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKA   84 (310)
T ss_pred             hhhheEEEEEeecCCCEEEEEEEEC----CCCcEEEEEEEeccCC-cCCchhHHHHHHHHHHhCCCCCccceEEEEeccc
Confidence            4568999999999999999999876    3788999999865422 2223345567999999999999999999986544


Q ss_pred             --------cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          160 --------WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       160 --------~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                              ..|+||||+ +++|..++... ...+++..++.++.||+.||.|||++|++|+||||+||+++.++.+||+|
T Consensus        85 ~~~~~~~~~~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~d  162 (310)
T cd07865          85 TPYNRYKGSFYLVFEFC-EHDLAGLLSNK-NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLAD  162 (310)
T ss_pred             ccccCCCceEEEEEcCC-CcCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECc
Confidence                    459999999 56887776553 24689999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++..........                                                                  
T Consensus       163 fg~~~~~~~~~~~~------------------------------------------------------------------  176 (310)
T cd07865         163 FGLARAFSLSKNSK------------------------------------------------------------------  176 (310)
T ss_pred             CCCcccccCCcccC------------------------------------------------------------------
Confidence            99986543211000                                                                  


Q ss_pred             ccccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc---------------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL---------------  375 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~---------------  375 (457)
                      ........++..|+|||++.+.. ++.++||||||+++|||++|+.||.+.........+.....               
T Consensus       177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
T cd07865         177 PNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLEL  256 (310)
T ss_pred             CCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhh
Confidence            00001235788999999987654 78899999999999999999999987654433222221100               


Q ss_pred             ----CCCCC-----------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          376 ----EFPKE-----------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       376 ----~~~~~-----------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                          .++..           ...+..+.++|.+||..||++||+    ++++++||||
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t----~~e~l~h~~f  310 (310)
T cd07865         257 FKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRID----ADTALNHDFF  310 (310)
T ss_pred             hhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccC----HHHHhcCCCC
Confidence                01100           012456789999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=2.4e-41  Score=330.99  Aligned_cols=265  Identities=18%  Similarity=0.262  Sum_probs=211.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTL  151 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l  151 (457)
                      .+.+..++|.+.+.||+|+||.||+|.+...+.   .....+|+|++....  .......+..|+++++++ +|+||+++
T Consensus        12 ~~~~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~~h~~i~~~   89 (307)
T cd05098          12 RWEVPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINL   89 (307)
T ss_pred             cceeehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCC--ChHHHHHHHHHHHHHHHhcCCCCEeeE
Confidence            455666899999999999999999998754322   234579999997542  122345677799999999 79999999


Q ss_pred             EEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      ++++...+..|+||||+.+++|.+++....              ...+++..++.++.||+.||+|||++|++||||||+
T Consensus        90 ~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~  169 (307)
T cd05098          90 LGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAAR  169 (307)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHH
Confidence            999999999999999999999999987642              134888999999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||++.++.+||+|||++..........                                                    
T Consensus       170 Nill~~~~~~kL~dfg~a~~~~~~~~~~----------------------------------------------------  197 (307)
T cd05098         170 NVLVTEDNVMKIADFGLARDIHHIDYYK----------------------------------------------------  197 (307)
T ss_pred             heEEcCCCcEEECCCcccccccccchhh----------------------------------------------------
Confidence            9999999999999999875432110000                                                    


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccC
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALE  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  376 (457)
                                      ......++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+. ....
T Consensus       198 ----------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~-~~~~  260 (307)
T cd05098         198 ----------------KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLK-EGHR  260 (307)
T ss_pred             ----------------ccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH-cCCC
Confidence                            0000124568999999998889999999999999999998 899998766554444433 3333


Q ss_pred             CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       377 ~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ......++.++.+|+.+||..+|++||+    +.+++++
T Consensus       261 ~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~evl~~  295 (307)
T cd05098         261 MDKPSNCTNELYMMMRDCWHAVPSQRPT----FKQLVED  295 (307)
T ss_pred             CCCCCcCCHHHHHHHHHHcccChhhCcC----HHHHHHH
Confidence            3444567889999999999999999999    7777654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=5.8e-42  Score=338.57  Aligned_cols=262  Identities=20%  Similarity=0.333  Sum_probs=204.4

Q ss_pred             EEeccc--CcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEE
Q 012762           88 HRLGSG--DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        88 ~~LG~G--~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      ..||.|  +||+||+|++.    .+|+.||+|++....... ...+.+.+|+.+++.++||||++++++|..++..|+||
T Consensus         4 ~~ig~g~~~~~~v~~a~~~----~~~~~vaiK~~~~~~~~~-~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~   78 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHT----PTGTLVTVRITDLENCTE-EHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVIS   78 (328)
T ss_pred             HHhCCcccCceeEEEEEEc----CCCcEEEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEE
Confidence            356666  99999999876    478999999987543322 34567888999999999999999999999999999999


Q ss_pred             eecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccc
Q 012762          166 EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA  245 (457)
Q Consensus       166 E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~  245 (457)
                      ||+.+++|..++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.++++||+.+..........
T Consensus        79 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
T cd08226          79 PFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKA  158 (328)
T ss_pred             ecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccc
Confidence            99999999998887655569999999999999999999999999999999999999999999999998643221100000


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCcc
Q 012762          246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL  325 (457)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  325 (457)
                      .                                                  ..             ........++..|+
T Consensus       159 ~--------------------------------------------------~~-------------~~~~~~~~~~~~y~  175 (328)
T cd08226         159 K--------------------------------------------------VV-------------YDFPQFSTSVLPWL  175 (328)
T ss_pred             c--------------------------------------------------cc-------------ccccccccCccCcc
Confidence            0                                                  00             00000113567899


Q ss_pred             CchhhcCC--CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC---------------------------
Q 012762          326 APEIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE---------------------------  376 (457)
Q Consensus       326 aPE~l~~~--~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~---------------------------  376 (457)
                      |||++.+.  .++.++|||||||++|+|++|..||............+.....                           
T Consensus       176 aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (328)
T cd08226         176 SPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIG  255 (328)
T ss_pred             ChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccc
Confidence            99999764  4789999999999999999999999876655444443322111                           


Q ss_pred             ------------------CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          377 ------------------FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       377 ------------------~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                        .+....++..+.+||.+||+.||++||+    +.++++||||+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt----a~e~l~~~~~~~~  314 (328)
T cd08226         256 ESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPS----ASSLLSHAFFKQV  314 (328)
T ss_pred             cchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCC----HHHHhhCHHHHHH
Confidence                              1111235567899999999999999999    9999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3.3e-41  Score=323.09  Aligned_cols=256  Identities=25%  Similarity=0.373  Sum_probs=203.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .+.+.....||+|+||.||+|.+.    .++..||+|.+.....   .....+.+|+++++.++|+||+++++++..++.
T Consensus         7 ~~~~~~~~~lg~g~~g~v~~~~~~----~~~~~v~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   79 (268)
T cd06624           7 YDENGERVVLGKGTYGIVYAARDL----STQVRIAIKEIPERDS---RYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF   79 (268)
T ss_pred             cccCCceEEEecCCceEEEEeEec----CCCcEEEEEEecCCCH---HHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE
Confidence            344555578999999999999876    3678899998865422   344567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRF--HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~--~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~  237 (457)
                      .++||||+.+++|..++.... ..+  ++..+..++.||+.||.|||+.||+||||||+||+++. ++.++|+|||++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~  158 (268)
T cd06624          80 FKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKR  158 (268)
T ss_pred             EEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhhee
Confidence            999999999999998887542 334  78888999999999999999999999999999999986 67999999998754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                      ....
T Consensus       159 ~~~~~~----------------------------------------------------------------------~~~~  168 (268)
T cd06624         159 LAGINP----------------------------------------------------------------------CTET  168 (268)
T ss_pred             cccCCC----------------------------------------------------------------------cccc
Confidence            321100                                                                      0001


Q ss_pred             ccCCCCccCchhhcCCC--CCccchhhhhhHHHHHHhcCCCCCCCCChHHHH-HHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL-ANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~--~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ..|+..|+|||++.+..  ++.++||||||+++|+|++|..||......... ............+..+++++.+++.+|
T Consensus       169 ~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  248 (268)
T cd06624         169 FTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRC  248 (268)
T ss_pred             CCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHH
Confidence            24788999999987654  788999999999999999999999765432221 111111111122335788999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      |..+|.+||+    +.+++.||||
T Consensus       249 l~~~p~~Rpt----~~~ll~~~~~  268 (268)
T cd06624         249 FEPDPDKRAS----AHDLLQDPFL  268 (268)
T ss_pred             cCCCchhCCC----HHHHHhCCCC
Confidence            9999999999    9999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=3.6e-41  Score=329.19  Aligned_cols=266  Identities=18%  Similarity=0.272  Sum_probs=214.1

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..+.+..++|.+.+.||+|+||.||+|++...+   ...+..||+|++....  .......+..|+++++.+ +|+||++
T Consensus         8 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~   85 (304)
T cd05101           8 PRWEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIIN   85 (304)
T ss_pred             CcccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc--chHHHHHHHHHHHHHHhhccCCCchh
Confidence            345677889999999999999999999864322   2345689999986432  223456678899999999 8999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++......|+||||+.+++|..++....              ...++...+..++.||+.||.|||++||+||||||
T Consensus        86 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp  165 (304)
T cd05101          86 LLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAA  165 (304)
T ss_pred             eeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeeccccc
Confidence            9999999999999999999999999887642              23577888999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +|||++.++.+||+|||+++.........                                                   
T Consensus       166 ~Nili~~~~~~kl~D~g~~~~~~~~~~~~---------------------------------------------------  194 (304)
T cd05101         166 RNVLVTENNVMKIADFGLARDVNNIDYYK---------------------------------------------------  194 (304)
T ss_pred             ceEEEcCCCcEEECCCccceecccccccc---------------------------------------------------
Confidence            99999999999999999986543211100                                                   


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                       ......++..|+|||++.+..++.++|||||||++|+|++ |..||.+.+..+....+... .
T Consensus       195 -----------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~  256 (304)
T cd05101         195 -----------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEG-H  256 (304)
T ss_pred             -----------------cccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC-C
Confidence                             0001135678999999998889999999999999999998 88999887766655554433 3


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .......++..+.+|+.+||..+|.+||+    +.++++.
T Consensus       257 ~~~~~~~~~~~~~~li~~cl~~~p~~Rps----~~e~l~~  292 (304)
T cd05101         257 RMDKPANCTNELYMMMRDCWHAIPSHRPT----FKQLVED  292 (304)
T ss_pred             cCCCCCCCCHHHHHHHHHHcccChhhCCC----HHHHHHH
Confidence            33344568899999999999999999999    7877764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.8e-41  Score=320.55  Aligned_cols=247  Identities=20%  Similarity=0.357  Sum_probs=201.1

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||+||+|.++.    +++.||+|.+...  ........+.+|+++|++++|+||+++++++...+..|+||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~----~~~~~a~k~~~~~--~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   74 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRA----DNTPVAVKSCRET--LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL   74 (252)
T ss_pred             CccCcccCccEEEEEEec----CCceEEEEecCcc--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEee
Confidence            368999999999999873    7889999987643  2233456788899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +.+++|.+++... ...+++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++..........  
T Consensus        75 ~~~~~L~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~--  151 (252)
T cd05084          75 VQGGDFLTFLRTE-GPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYAS--  151 (252)
T ss_pred             ccCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccc--
Confidence            9999999888654 2468999999999999999999999999999999999999999999999999975432110000  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......++..|+||
T Consensus       152 ------------------------------------------------------------------~~~~~~~~~~y~aP  165 (252)
T cd05084         152 ------------------------------------------------------------------TGGMKQIPVKWTAP  165 (252)
T ss_pred             ------------------------------------------------------------------cCCCCCCceeecCc
Confidence                                                                              00001235679999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      |.+.+..++.++|||||||++|||++ |..||...........+. .....+....++..+.+++.+||..||++||+  
T Consensus       166 E~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps--  242 (252)
T cd05084         166 EALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIE-QGVRLPCPELCPDAVYRLMERCWEYDPGQRPS--  242 (252)
T ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHH-cCCCCCCcccCCHHHHHHHHHHcCCChhhCcC--
Confidence            99998889999999999999999997 999998766655444433 33344444567899999999999999999999  


Q ss_pred             cChHHHhc
Q 012762          407 MGATAIKR  414 (457)
Q Consensus       407 ~~~~~ll~  414 (457)
                        +.++++
T Consensus       243 --~~~~~~  248 (252)
T cd05084         243 --FSTVHQ  248 (252)
T ss_pred             --HHHHHH
Confidence              888764

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.1e-41  Score=336.79  Aligned_cols=255  Identities=27%  Similarity=0.386  Sum_probs=207.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR-  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~-  159 (457)
                      .++|++++.||+|+||.||+|.+.    .++..||+|++.+.. ........+..|+++|+.++|+||+++++++..+. 
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDR----RTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLS   88 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEEC----CCCcEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcc
Confidence            467999999999999999999876    478899999986432 22233456778999999999999999999987654 


Q ss_pred             -----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          160 -----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       160 -----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                           ..|+||||+ +++|..++..   ..+++..++.++.||+.||.|||+.||+||||||+||+++.++.++|+|||+
T Consensus        89 ~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~  164 (343)
T cd07880          89 LDRFHDFYLVMPFM-GTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL  164 (343)
T ss_pred             ccccceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccc
Confidence                 358999999 8899887764   5689999999999999999999999999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       165 ~~~~~~~-------------------------------------------------------------------------  171 (343)
T cd07880         165 ARQTDSE-------------------------------------------------------------------------  171 (343)
T ss_pred             ccccccC-------------------------------------------------------------------------
Confidence            7543210                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      .....+++.|+|||++.+ ..++.++|+|||||++|+|++|..||.+......+..++......+               
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (343)
T cd07880         172 MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNY  251 (343)
T ss_pred             ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHH
Confidence            001247889999999976 3578999999999999999999999987665444443332211100               


Q ss_pred             --------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          379 --------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       379 --------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                    ....++..+.++|.+||..||++||+    +.+++.||||+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t----~~~~l~~~~~~~~  304 (343)
T cd07880         252 VKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRIT----AAEALAHPYFEEF  304 (343)
T ss_pred             HHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCC----HHHHhcCccHhhh
Confidence                          01346778999999999999999999    9999999999964

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=3.4e-41  Score=325.45  Aligned_cols=260  Identities=18%  Similarity=0.321  Sum_probs=210.9

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +...+|++.++||+|+||.||+|..... ....+..+|+|.+....   ......+.+|+++++.++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   78 (280)
T cd05092           2 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---ESARQDFQREAELLTVLQHQHIVRFYGVCTE   78 (280)
T ss_pred             CChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC---HHHHHHHHHHHHHHhcCCCCCCceEEEEEec
Confidence            3456899999999999999999975421 22356789999886532   2345678889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPD-------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~-------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~  224 (457)
                      .+..|+||||+.+++|.+++.....             ..+++..++.++.||+.||+|||+.||+||||||+|||++.+
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~  158 (280)
T cd05092          79 GRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQG  158 (280)
T ss_pred             CCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCC
Confidence            9999999999999999998876431             358899999999999999999999999999999999999999


Q ss_pred             CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       225 ~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                      +.+||+|||++..........                                                           
T Consensus       159 ~~~kL~dfg~~~~~~~~~~~~-----------------------------------------------------------  179 (280)
T cd05092         159 LVVKIGDFGMSRDIYSTDYYR-----------------------------------------------------------  179 (280)
T ss_pred             CCEEECCCCceeEcCCCceee-----------------------------------------------------------
Confidence            999999999875432110000                                                           


Q ss_pred             cccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCC
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSV  383 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  383 (457)
                               ......+++.|+|||++.+..++.++|||||||++|||++ |..||...........+.... .......+
T Consensus       180 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~  249 (280)
T cd05092         180 ---------VGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGR-ELERPRTC  249 (280)
T ss_pred             ---------cCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCc-cCCCCCCC
Confidence                     0001235788999999999999999999999999999998 999998776666665554442 23334468


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +..+.+++.+||+.||.+||+    +.+|++
T Consensus       250 ~~~~~~li~~cl~~~P~~Rp~----~~~l~~  276 (280)
T cd05092         250 PPEVYAIMQGCWQREPQQRMV----IKDIHS  276 (280)
T ss_pred             CHHHHHHHHHHccCChhhCCC----HHHHHH
Confidence            899999999999999999999    888764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-42  Score=295.67  Aligned_cols=258  Identities=25%  Similarity=0.385  Sum_probs=213.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|.-.++||+|.||+||+|+.+    ++++.||+|.++..+. .+.......+|+-+|+.|+|.|||+++++...+..+-
T Consensus         3 ~ydkmekigegtygtvfkarn~----~t~eivalkrvrlddd-degvpssalreicllkelkhknivrl~dvlhsdkklt   77 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNR----ETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLT   77 (292)
T ss_pred             chHHHHhhcCCcceeeEecccC----CccceEEEEEEeccCC-CCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeE
Confidence            4666789999999999988766    5889999999976542 2234456778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +|+||| ..+|..+.... ++.++.+.++.++.|++.||.|+|+.+++|||+||.|+||+.+|.+|++|||+++.+.-+.
T Consensus        78 lvfe~c-dqdlkkyfdsl-ng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipv  155 (292)
T KOG0662|consen   78 LVFEFC-DQDLKKYFDSL-NGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV  155 (292)
T ss_pred             EeHHHh-hHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCce
Confidence            999999 88998777664 4789999999999999999999999999999999999999999999999999987654221


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                               |-+                                       .-+-|.
T Consensus       156 r-------------------------------cys---------------------------------------aevvtl  165 (292)
T KOG0662|consen  156 R-------------------------------CYS---------------------------------------AEVVTL  165 (292)
T ss_pred             E-------------------------------eee---------------------------------------ceeeee
Confidence            0                               111                                       125799


Q ss_pred             CccCchhhcCCC-CCccchhhhhhHHHHHHh-cCCCCCCCCChHHHHHHHHhcccCCCC--C------------------
Q 012762          323 EYLAPEIISGEG-HGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPK--E------------------  380 (457)
Q Consensus       323 ~y~aPE~l~~~~-~~~~sDiwSlG~il~ell-tG~~Pf~~~~~~~~~~~~~~~~~~~~~--~------------------  380 (457)
                      .|++|.++.|.. |+...|+||.|||+.|+. .|++.|.+.+..+.+.+|........+  +                  
T Consensus       166 wyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypat  245 (292)
T KOG0662|consen  166 WYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPAT  245 (292)
T ss_pred             eccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCcccc
Confidence            999999999887 899999999999999999 599999998887777777653221111  1                  


Q ss_pred             -------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          381 -------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       381 -------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                             +.++..-++|++++|..+|..|.+    ++..++||||...
T Consensus       246 tswsqivp~lns~grdllqkll~cnp~qris----aeaalqhpyf~d~  289 (292)
T KOG0662|consen  246 TSWSQIVPKLNSTGRDLLQKLLKCNPAQRIS----AEAALQHPYFSDF  289 (292)
T ss_pred             chHHHHhhhhcchhHHHHHHHhccCcccccC----HHHHhcCcccccc
Confidence                   111224679999999999999999    9999999999853

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=4.9e-41  Score=329.93  Aligned_cols=265  Identities=19%  Similarity=0.260  Sum_probs=212.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..+.+..++|.+.++||+|+||.||+|.+....   ......||+|+++...  .......+..|+++++++ +||||++
T Consensus         5 ~~~~~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (314)
T cd05099           5 PKWEFPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNA--TDKDLADLISEMELMKLIGKHKNIIN   82 (314)
T ss_pred             ccccccHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCC--ChHHHHHHHHHHHHHHhccCCCCeee
Confidence            345677789999999999999999999864321   1245679999987532  223355677899999999 6999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++...+.+|+||||+.+++|..++....              ...+++..+..++.||+.||.|||++||+||||||
T Consensus        83 ~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp  162 (314)
T cd05099          83 LLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAA  162 (314)
T ss_pred             EEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccc
Confidence            9999999999999999999999999987632              23588899999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +|||++.++.+||+|||+++..........                                                  
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~--------------------------------------------------  192 (314)
T cd05099         163 RNVLVTEDNVMKIADFGLARGVHDIDYYKK--------------------------------------------------  192 (314)
T ss_pred             eeEEEcCCCcEEEccccccccccccccccc--------------------------------------------------
Confidence            999999999999999999865432111000                                                  


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                        .....++..|+|||++.+..++.++|||||||++|+|++ |..||.+.........+... .
T Consensus       193 ------------------~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~  253 (314)
T cd05099         193 ------------------TSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREG-H  253 (314)
T ss_pred             ------------------cccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-C
Confidence                              000124567999999998889999999999999999998 89999887766665555443 2


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .......++.++++++.+||..||++||+    +.++++
T Consensus       254 ~~~~~~~~~~~l~~li~~cl~~~p~~Rps----~~~ll~  288 (314)
T cd05099         254 RMDKPSNCTHELYMLMRECWHAVPTQRPT----FKQLVE  288 (314)
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCCcccCcC----HHHHHH
Confidence            23334467889999999999999999999    777765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-41  Score=326.49  Aligned_cols=255  Identities=27%  Similarity=0.398  Sum_probs=207.2

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |++.+.||.|++|+||+|.++    .+|..||+|++..... .......+..|+++++.++|+||+++++++..++..|+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~----~~~~~~~ik~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~i   75 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDK----LTGEIVALKKIRLETE-DEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYL   75 (283)
T ss_pred             CchheEecCCCCeEEEEEEEc----CCCCEEEEEEeecccc-cccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEE
Confidence            678899999999999999976    3788999999875432 22233556779999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+ +++|..++.......+++..+..++.|++.||.|||+.+++|+||+|+||+++.++.++|+|||++........
T Consensus        76 v~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          76 VFEFL-DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             EEecc-CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            99999 57899888776545799999999999999999999999999999999999999999999999999754321100


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                      .                                                                      .....++..
T Consensus       155 ~----------------------------------------------------------------------~~~~~~~~~  164 (283)
T cd07835         155 T----------------------------------------------------------------------YTHEVVTLW  164 (283)
T ss_pred             c----------------------------------------------------------------------cCccccccC
Confidence            0                                                                      001136889


Q ss_pred             ccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------CC------
Q 012762          324 YLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------FP------  378 (457)
Q Consensus       324 y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------~~------  378 (457)
                      |+|||++.+. .++.++|||||||++|+|++|+.||...+....+.++......                  ++      
T Consensus       165 ~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T cd07835         165 YRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQD  244 (283)
T ss_pred             CCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccc
Confidence            9999998765 4788999999999999999999999877654444333321100                  00      


Q ss_pred             ---CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ---KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ---~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                         ....++.++.++|.+||+.||.+||+    +.|+++||||
T Consensus       245 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~il~~~~~  283 (283)
T cd07835         245 LSKVVPNLDEDGLDLLSKMLVYDPAKRIS----AKAALQHPYF  283 (283)
T ss_pred             hhhhcCCCCHHHHHHHHHHhcCChhhCcC----HHHHhcCCCC
Confidence               12346678999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-41  Score=319.87  Aligned_cols=250  Identities=44%  Similarity=0.813  Sum_probs=213.5

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||.|+||.||+|.+.    .+++.||+|++.+...........+..|+++++.++|+||+++++.+..++..|+||||+.
T Consensus         1 lg~G~~~~v~~~~~~----~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   76 (250)
T cd05123           1 LGKGSFGKVLLVRKK----DTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAP   76 (250)
T ss_pred             CCCCCceEEEEEEEC----CCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCC
Confidence            699999999999876    3678999999988766555567788889999999999999999999999999999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS  249 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~  249 (457)
                      +++|.+++...  ..+++..+..++.||+.||.|||+.+++|+||+|+||+++.++.++|+|||++........      
T Consensus        77 ~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~------  148 (250)
T cd05123          77 GGELFSHLSKE--GRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS------  148 (250)
T ss_pred             CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC------
Confidence            99999988775  4689999999999999999999999999999999999999999999999998754421100      


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchh
Q 012762          250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI  329 (457)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  329 (457)
                                                                                      ......|+..|++||.
T Consensus       149 ----------------------------------------------------------------~~~~~~~~~~~~~Pe~  164 (250)
T cd05123         149 ----------------------------------------------------------------RTNTFCGTPEYLAPEV  164 (250)
T ss_pred             ----------------------------------------------------------------cccCCcCCccccChHH
Confidence                                                                            0112358889999999


Q ss_pred             hcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcCh
Q 012762          330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA  409 (457)
Q Consensus       330 l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~  409 (457)
                      +.+..++.++|+||||+++|+|++|..||...........+......++  ..++..+.+++++||..||++||+... +
T Consensus       165 ~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~i~~~l~~~p~~R~~~~~-~  241 (250)
T cd05123         165 LLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFP--EFLSPEARDLISGLLQKDPTKRLGSGG-A  241 (250)
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHHhcCCHhhCCCccc-H
Confidence            9988889999999999999999999999988776666666665443333  447899999999999999999999222 2


Q ss_pred             HHHhcCCCC
Q 012762          410 TAIKRHQFF  418 (457)
Q Consensus       410 ~~ll~hp~f  418 (457)
                      +++++||||
T Consensus       242 ~~l~~~~~f  250 (250)
T cd05123         242 EEIKAHPFF  250 (250)
T ss_pred             HHHHhCCCC
Confidence            999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.4e-41  Score=318.78  Aligned_cols=249  Identities=20%  Similarity=0.323  Sum_probs=209.4

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.+.||.|+||.||+|..      .|+.||+|.+.....    ..+++..|+.+++.++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~v~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~   71 (256)
T cd05039           2 AINSKELKLGATIGKGEFGDVMLGDY------RGQKVAVKCLKDDST----AAQAFLAEASVMTTLRHPNLVQLLGVVLQ   71 (256)
T ss_pred             ccChhhccceeeeecCCCceEEEEEe------cCcEEEEEEeccchh----HHHHHHHHHHHHHhcCCcceeeeEEEEcC
Confidence            34567899999999999999999975      467899999975432    45678889999999999999999999998


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ....|+||||+++++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||+++.
T Consensus        72 ~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~  151 (256)
T cd05039          72 GNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE  151 (256)
T ss_pred             CCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccc
Confidence            89999999999999999998876545799999999999999999999999999999999999999999999999998754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                         .
T Consensus       152 ~~~~~~-------------------------------------------------------------------------~  158 (256)
T cd05039         152 ASQGQD-------------------------------------------------------------------------S  158 (256)
T ss_pred             cccccc-------------------------------------------------------------------------c
Confidence            421100                                                                         0


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..++..|+|||++.+..++.++|||||||++|+|++ |..||...........+. ..........+++.+.++|.+||.
T Consensus       159 ~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~  237 (256)
T cd05039         159 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVE-KGYRMEAPEGCPPEVYKVMKDCWE  237 (256)
T ss_pred             CCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHh-cCCCCCCccCCCHHHHHHHHHHhc
Confidence            124567999999988889999999999999999997 999998776555444433 333333344578999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .+|++||+    +.++++
T Consensus       238 ~~p~~Rp~----~~~l~~  251 (256)
T cd05039         238 LDPAKRPT----FKQLRE  251 (256)
T ss_pred             cChhhCcC----HHHHHH
Confidence            99999999    888775

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=5.6e-41  Score=319.68  Aligned_cols=244  Identities=20%  Similarity=0.305  Sum_probs=197.0

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeec
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC  168 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~  168 (457)
                      +||+|+||.||+|.++..  .++..+|+|+++... ........+..|+++++.++|+||+++++++.. +..++||||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~--~~~~~~aiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~   77 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMK--KSEKTVAVKILKNDN-NDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELA   77 (257)
T ss_pred             cCCCcCCcceEEeEEecC--CCceEEEEEEccCCC-CcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecC
Confidence            689999999999976532  367789999986442 223345678889999999999999999998864 5678999999


Q ss_pred             CCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccc
Q 012762          169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV  248 (457)
Q Consensus       169 ~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~  248 (457)
                      ++++|.+++...  ..+++..+..++.||+.||.|||++||+||||||.|||++.++.+||+|||++...........  
T Consensus        78 ~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~--  153 (257)
T cd05116          78 ELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYK--  153 (257)
T ss_pred             CCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeee--
Confidence            999999888764  5689999999999999999999999999999999999999999999999999865432111000  


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCch
Q 012762          249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  328 (457)
                                                                                       ......++..|+|||
T Consensus       154 -----------------------------------------------------------------~~~~~~~~~~y~aPE  168 (257)
T cd05116         154 -----------------------------------------------------------------AKTHGKWPVKWYAPE  168 (257)
T ss_pred             -----------------------------------------------------------------ecCCCCCCccccCHh
Confidence                                                                             000112567899999


Q ss_pred             hhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          329 IISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       329 ~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ++.+..++.++|||||||++|||++ |..||...........+... ...+.+..++.++.++|.+||+.||++||++.
T Consensus       169 ~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~  246 (257)
T cd05116         169 CMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESG-ERMECPQRCPPEMYDLMKLCWTYGVDERPGFA  246 (257)
T ss_pred             HhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHhccCchhCcCHH
Confidence            9988889999999999999999997 99999887665555554433 33444456899999999999999999999943

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=5.7e-41  Score=325.71  Aligned_cols=260  Identities=18%  Similarity=0.310  Sum_probs=210.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +...+|.+.+.||+|+||.||+|.+... ....+..+++|.+.....   ...+.+.+|++++++++|+||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   78 (291)
T cd05094           2 IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTL---AARKDFQREAELLTNLQHEHIVKFYGVCGD   78 (291)
T ss_pred             CchHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccH---HHHHHHHHHHHHHhcCCCCCcceEEEEEcc
Confidence            3456899999999999999999986432 123556789999864322   334567889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS  223 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~  223 (457)
                      .+..++||||+++++|.+++..+.              ...+++..++.++.||+.||.|||++||+||||||+|||++.
T Consensus        79 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~  158 (291)
T cd05094          79 GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGA  158 (291)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEcc
Confidence            999999999999999999987642              234889999999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.++|+|||++.........                                                           
T Consensus       159 ~~~~~l~dfg~a~~~~~~~~~-----------------------------------------------------------  179 (291)
T cd05094         159 NLLVKIGDFGMSRDVYSTDYY-----------------------------------------------------------  179 (291)
T ss_pred             CCcEEECCCCcccccCCCcee-----------------------------------------------------------
Confidence            999999999997543211000                                                           


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                               .......|+..|+|||++.+..++.++|||||||++|||++ |..||...........+...... .....
T Consensus       180 ---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~  249 (291)
T cd05094         180 ---------RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVL-ERPRV  249 (291)
T ss_pred             ---------ecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCC-CCCcc
Confidence                     00012247889999999999889999999999999999998 99999887766666555443322 22345


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++..+.+++.+||+.||++||+    +.++++
T Consensus       250 ~~~~~~~li~~~l~~~P~~Rpt----~~~v~~  277 (291)
T cd05094         250 CPKEVYDIMLGCWQREPQQRLN----IKEIYK  277 (291)
T ss_pred             CCHHHHHHHHHHcccChhhCcC----HHHHHH
Confidence            7889999999999999999999    777654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=6.4e-41  Score=321.30  Aligned_cols=261  Identities=23%  Similarity=0.332  Sum_probs=211.2

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ...+|++.+.||+|+||.||+|.++.... .+..||+|++....  .......+..|+++++.++||||+++++++..++
T Consensus         2 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~-~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~   78 (269)
T cd05065           2 DVSCVKIEEVIGAGEFGEVCRGRLKLPGK-REIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR   78 (269)
T ss_pred             ChHHeEEEeEecCCCCCeEEEEEEecCCC-CceeEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCC
Confidence            35679999999999999999999874221 34579999986532  2334567888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..++||||+.+++|..++... .+.+++..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++....
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          79 PVMIITEFMENGALDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             ceEEEEecCCCCcHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccc
Confidence            999999999999999888764 3568999999999999999999999999999999999999999999999999875443


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ........                                                                 .......
T Consensus       158 ~~~~~~~~-----------------------------------------------------------------~~~~~~~  172 (269)
T cd05065         158 DDTSDPTY-----------------------------------------------------------------TSSLGGK  172 (269)
T ss_pred             cCcccccc-----------------------------------------------------------------ccccCCC
Confidence            21110000                                                                 0000001


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++|||||||++|||++ |..||...........+ ......+....++..+.+++.+||..+
T Consensus       173 ~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~li~~~l~~~  251 (269)
T cd05065         173 IPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAI-EQDYRLPPPMDCPTALHQLMLDCWQKD  251 (269)
T ss_pred             cceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHH-HcCCcCCCcccCCHHHHHHHHHHcCCC
Confidence            2457999999998889999999999999999886 99999887766555554 344555555678899999999999999


Q ss_pred             CCCCCCCCcChHHHhc
Q 012762          399 PTRRMGSKMGATAIKR  414 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~  414 (457)
                      |.+||+    +.+|+.
T Consensus       252 p~~Rp~----~~~i~~  263 (269)
T cd05065         252 RNARPK----FGQIVS  263 (269)
T ss_pred             hhhCcC----HHHHHH
Confidence            999999    888765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=4e-41  Score=322.81  Aligned_cols=257  Identities=20%  Similarity=0.265  Sum_probs=206.3

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc---
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW---  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~---  160 (457)
                      |++.+.||+|+||.||+|.+... ...+..||+|++..... .......+..|+++++.++|+||+++++++.....   
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~-~~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   78 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQD-DGSQLKVAVKTMKLDIH-TYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQK   78 (273)
T ss_pred             CccccccCcCCCceEEEEEEecC-CCCcceEEEEEeccCcC-CHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcccc
Confidence            57889999999999999987532 12457899999875422 23345678889999999999999999998865544   


Q ss_pred             ---EEEEEeecCCCChHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          161 ---SCLLTEFCPGGDLHVLRQRQ----PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       161 ---~~lV~E~~~~~sL~~~~~~~----~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                         .++||||+++++|..++...    ....+++..++.++.||+.||.|||+.+|+||||||+||+++.++.+||+|||
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg  158 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFG  158 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCcc
Confidence               79999999999998887543    22468999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.........                                                                    
T Consensus       159 ~~~~~~~~~~~~--------------------------------------------------------------------  170 (273)
T cd05035         159 LSKKIYSGDYYR--------------------------------------------------------------------  170 (273)
T ss_pred             ceeecccccccc--------------------------------------------------------------------
Confidence            976543211100                                                                    


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ......++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+... ........++..+.+++.
T Consensus       171 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~  249 (273)
T cd05035         171 QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHG-NRLKQPEDCLDELYDLMY  249 (273)
T ss_pred             ccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCCCCCcCCCHHHHHHHH
Confidence            0001125678999999988889999999999999999998 99999887776666555443 233344568899999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcC
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +||..||++||+    +.+++++
T Consensus       250 ~~l~~~p~~Rp~----~~e~~~~  268 (273)
T cd05035         250 SCWRADPKDRPT----FTKLREV  268 (273)
T ss_pred             HHcCCChhhCcC----HHHHHHH
Confidence            999999999999    8888764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=6.6e-41  Score=317.68  Aligned_cols=256  Identities=28%  Similarity=0.499  Sum_probs=217.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.+.+.||.|+||.||+|.+.    .++..||+|++..... .......+..|+++++.++|+|++++++.+...+..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~   75 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRK----SDGKLYVLKEIDLSNM-SEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLC   75 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEc----CCCcEEEEEEeecccC-ChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEE
Confidence            5899999999999999999976    3688999999976432 2234556778999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +||||+++++|..++....  ...+++..+..++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++.....
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~  155 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSS  155 (258)
T ss_pred             EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeeccc
Confidence            9999999999998887643  46799999999999999999999999999999999999999999999999998754332


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       156 ~~~----------------------------------------------------------------------~~~~~~~  165 (258)
T cd08215         156 TVD----------------------------------------------------------------------LAKTVVG  165 (258)
T ss_pred             Ccc----------------------------------------------------------------------eecceee
Confidence            110                                                                      0012358


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      ++.|+|||.+.+..++.++|+||+|+++|+|++|..||................. .+....++.++.+++.+||..||+
T Consensus       166 ~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~p~  244 (258)
T cd08215         166 TPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQY-PPIPSQYSSELRNLVSSLLQKDPE  244 (258)
T ss_pred             eecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHcCCChh
Confidence            8999999999988899999999999999999999999988776666655554432 222336889999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCC
Q 012762          401 RRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f  418 (457)
                      +||+    +.++++||||
T Consensus       245 ~Rp~----~~~ll~~~~~  258 (258)
T cd08215         245 ERPS----IAQILQSPFI  258 (258)
T ss_pred             hCcC----HHHHhcCCCC
Confidence            9999    9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=7.7e-41  Score=328.45  Aligned_cols=255  Identities=24%  Similarity=0.345  Sum_probs=210.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |...++||+|+||+||+|.+.    .++..||+|++.............+..|+++++.++|+||+++++++......|+
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~----~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   98 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNS----HTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWL   98 (313)
T ss_pred             hhcceeeccCCCeEEEEEEEC----CCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence            677788999999999999875    4788999999976543333444567789999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+ .++|..++... ...+++..++.++.||+.||.|||++||+|+||+|+||+++.++.++|+|||++.....   
T Consensus        99 v~e~~-~~~l~~~l~~~-~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~---  173 (313)
T cd06633          99 VMEYC-LGSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP---  173 (313)
T ss_pred             EEecC-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCC---
Confidence            99999 46776666553 25689999999999999999999999999999999999999999999999998632110   


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                             .....|+..
T Consensus       174 -----------------------------------------------------------------------~~~~~~~~~  182 (313)
T cd06633         174 -----------------------------------------------------------------------ANSFVGTPY  182 (313)
T ss_pred             -----------------------------------------------------------------------CCCcccccc
Confidence                                                                                   012358899


Q ss_pred             ccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          324 YLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       324 y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      |+|||++.   +..++.++|||||||++|+|++|..||...........+............++..+++|+.+||+.+|.
T Consensus       183 y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~  262 (313)
T cd06633         183 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQ  262 (313)
T ss_pred             ccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChh
Confidence            99999985   345788999999999999999999999887665555555444333333345778899999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      +||+    +.++++||||+..+
T Consensus       263 ~Rp~----~~~~l~~~~~~~~~  280 (313)
T cd06633         263 ERPA----SAELLRHDFVRRDR  280 (313)
T ss_pred             hCcC----HHHHhcCcccCCCc
Confidence            9999    99999999998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=6.1e-41  Score=326.32  Aligned_cols=261  Identities=22%  Similarity=0.333  Sum_probs=206.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEec------------cCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKS------------KSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF  147 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~------------~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n  147 (457)
                      ..++|++.++||+|+||+||+|.+..            ....++..||+|++....  .......+.+|+++|+.++|+|
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~--~~~~~~~~~~E~~~l~~l~~~~   80 (296)
T cd05095           3 PRKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA--NKNARNDFLKEIKIMSRLKDPN   80 (296)
T ss_pred             ChhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCC
Confidence            44679999999999999999987542            122345679999986542  2234567788999999999999


Q ss_pred             CceEEEEEEcCCcEEEEEeecCCCChHHHHHhCC---------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCC
Q 012762          148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP---------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN  218 (457)
Q Consensus       148 Iv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~---------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~N  218 (457)
                      |+++++++...+..|+||||+.+++|..++....         ...+++..+..++.||+.||+|||+.||+|+||||+|
T Consensus        81 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~N  160 (296)
T cd05095          81 IIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRN  160 (296)
T ss_pred             cceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChhe
Confidence            9999999999999999999999999998887642         1246778899999999999999999999999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ||++.++.++|+|||++..........                                                     
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~-----------------------------------------------------  187 (296)
T cd05095         161 CLVGKNYTIKIADFGMSRNLYSGDYYR-----------------------------------------------------  187 (296)
T ss_pred             EEEcCCCCEEeccCcccccccCCccee-----------------------------------------------------
Confidence            999999999999999976442110000                                                     


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc--CCCCCCCCChHHHHHHHHh----
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY--GTTPFKGIDHELTLANVVA----  372 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt--G~~Pf~~~~~~~~~~~~~~----  372 (457)
                                     ......++..|++||+..+..++.++|||||||++|||++  |..||......+.......    
T Consensus       188 ---------------~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~  252 (296)
T cd05095         188 ---------------IQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRD  252 (296)
T ss_pred             ---------------ccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhh
Confidence                           0001235678999999988889999999999999999998  7899987665554433211    


Q ss_pred             --cccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          373 --RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       373 --~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                        .....+....++..+.+|+.+||+.||.+||+    +.+|.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~----~~~i~~  292 (296)
T cd05095         253 QGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPS----FQEIHA  292 (296)
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHcCCCcccCCC----HHHHHH
Confidence              12223444567889999999999999999999    777653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=9.7e-42  Score=337.84  Aligned_cols=262  Identities=23%  Similarity=0.349  Sum_probs=207.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----  157 (457)
                      ++|.+.+.||.|+||.||+|.++    .++..||+|++..... .......+..|+.+|++++|+||+++++++..    
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~----~~~~~valK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   79 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDT----RSGKKVAIKKIPHAFD-VPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGAD   79 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEc----CCCCEEEEEEeccccc-cccchHHHHHHHHHHHhcCCCCccCHHHhccccCCC
Confidence            57999999999999999999877    4788999999875422 22344566779999999999999999998753    


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ...+|+||||+ +++|..++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++..
T Consensus        80 ~~~~~lv~e~~-~~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          80 FKDVYVVMDLM-ESDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             CceEEEEEehh-hhhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEeccccccee
Confidence            34689999999 56898887654  5599999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                  ......
T Consensus       157 ~~~~~~~~------------------------------------------------------------------~~~~~~  170 (334)
T cd07855         157 LSSSPTEH------------------------------------------------------------------KYFMTE  170 (334)
T ss_pred             ecccCcCC------------------------------------------------------------------Cccccc
Confidence            43211000                                                                  000112


Q ss_pred             ccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc--------------------C
Q 012762          318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL--------------------E  376 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--------------------~  376 (457)
                      ..|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..+.....                    .
T Consensus       171 ~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  250 (334)
T cd07855         171 YVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQN  250 (334)
T ss_pred             ccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhh
Confidence            368999999999876 4589999999999999999999999987654332222221100                    0


Q ss_pred             CCC---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          377 FPK---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       377 ~~~---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++.         .+..+.+++++|.+||+.||++||+    +.+++.||||+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~~l~~~~~~~~  300 (334)
T cd07855         251 LPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERIT----VEQALQHPFLAQY  300 (334)
T ss_pred             cccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcC----HHHHHhChhhhhc
Confidence            000         1346788999999999999999999    9999999999853

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=3.3e-41  Score=326.39  Aligned_cols=261  Identities=26%  Similarity=0.412  Sum_probs=218.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .+.|.+...||+|+||.||+|.+..    .+..||+|++.....    ....+..|+++++.++|+||+++++++.....
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~----~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   89 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRA----TGKEVAIKKMRLRKQ----NKELIINEILIMKDCKHPNIVDYYDSYLVGDE   89 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEcc----CCcEEEEEEEecCch----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCE
Confidence            3568899999999999999998763    678899999975432    45567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++.... ..+++..+..++.|++.||.|||+.||+|+||+|+||+++.++.++|+|||++.....
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  168 (286)
T cd06614          90 LWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK  168 (286)
T ss_pred             EEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhcc
Confidence            999999999999999988753 3799999999999999999999999999999999999999999999999998643321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       169 ~~~----------------------------------------------------------------------~~~~~~~  178 (286)
T cd06614         169 EKS----------------------------------------------------------------------KRNSVVG  178 (286)
T ss_pred             chh----------------------------------------------------------------------hhccccC
Confidence            100                                                                      0012347


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|+|||++.+..++.++|+|||||++|+|++|..||...........+...... ......++..+.++|.+||+.+|
T Consensus       179 ~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  258 (286)
T cd06614         179 TPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDP  258 (286)
T ss_pred             CcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccCh
Confidence            88999999999888999999999999999999999999877665555444433222 22223478899999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCch
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .+||+    +.+++.|+||+...|.
T Consensus       259 ~~Rpt----~~~il~~~~~~~~~~~  279 (286)
T cd06614         259 EKRPS----AEELLQHPFLKKACPK  279 (286)
T ss_pred             hhCcC----HHHHhhChHhhccCch
Confidence            99999    9999999999986553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=1e-40  Score=318.46  Aligned_cols=254  Identities=20%  Similarity=0.326  Sum_probs=209.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      |.+..++|++.++||+|+||.||+|.+.     .+..+|+|.+.....    ....+.+|+++++.++|+||+++++++.
T Consensus         1 ~~~~~~~~~~~~~lg~g~~~~vy~~~~~-----~~~~~~iK~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~   71 (260)
T cd05073           1 WEIPRESLKLEKKLGAGQFGEVWMATYN-----KHTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT   71 (260)
T ss_pred             CcccccceeEEeEecCccceEEEEEEec-----CCccEEEEecCCChh----HHHHHHHHHHHHHhcCCCCcceEEEEEc
Confidence            4567789999999999999999999864     455699998865422    3456778999999999999999999988


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      . ...|+||||+++++|.+++.......+++..++.++.||+.||.|||+.|++|+||||+||+++.++.+||+|||++.
T Consensus        72 ~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~  150 (260)
T cd05073          72 K-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLAR  150 (260)
T ss_pred             C-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCccee
Confidence            7 778999999999999999987656678899999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       151 ~~~~~~~~~---------------------------------------------------------------------~~  161 (260)
T cd05073         151 VIEDNEYTA---------------------------------------------------------------------RE  161 (260)
T ss_pred             eccCCCccc---------------------------------------------------------------------cc
Confidence            442110000                                                                     00


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...++..|+|||++.+..++.++|+|||||++|+|++ |..||.+.+.......+ ......+.....+.++.+++.+||
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l  240 (260)
T cd05073         162 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRAL-ERGYRMPRPENCPEELYNIMMRCW  240 (260)
T ss_pred             CCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-hCCCCCCCcccCCHHHHHHHHHHc
Confidence            1135678999999998889999999999999999998 99999887665555443 344444555668899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhc
Q 012762          396 VKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..||++||+    +.+++.
T Consensus       241 ~~~p~~Rp~----~~~l~~  255 (260)
T cd05073         241 KNRPEERPT----FEYIQS  255 (260)
T ss_pred             ccCcccCcC----HHHHHH
Confidence            999999999    777754

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=6e-41  Score=319.04  Aligned_cols=252  Identities=22%  Similarity=0.327  Sum_probs=207.5

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      ++||+|+||+||+|.+... ......||+|.+......  ...+.+..|++++++++|+||+++++++.. ...++||||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~-~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~   76 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTS-GGKVIPVAVKCLKSDKLS--DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTEL   76 (257)
T ss_pred             CcCCccCcccEEeeeEecC-CCCceEEEEeecCCcccH--HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEe
Confidence            4689999999999998642 123347999999775443  456778889999999999999999999988 889999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|..++.......+++..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||+++.......... 
T Consensus        77 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~-  155 (257)
T cd05040          77 APLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV-  155 (257)
T ss_pred             cCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEecccccccccccccccee-
Confidence            9999999988775435689999999999999999999999999999999999999999999999999865432111000 


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......++..|+||
T Consensus       156 ------------------------------------------------------------------~~~~~~~~~~y~~p  169 (257)
T cd05040         156 ------------------------------------------------------------------MEEHLKVPFAWCAP  169 (257)
T ss_pred             ------------------------------------------------------------------cccCCCCCceecCH
Confidence                                                                              00012477889999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      |++.+..++.++|||||||++|||++ |..||......+....+.......+....++..+.+++.+||..+|++||+  
T Consensus       170 E~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps--  247 (257)
T cd05040         170 ESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPT--  247 (257)
T ss_pred             HHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCC--
Confidence            99998889999999999999999998 999998777666666655444444444567889999999999999999999  


Q ss_pred             cChHHHhc
Q 012762          407 MGATAIKR  414 (457)
Q Consensus       407 ~~~~~ll~  414 (457)
                        +.++++
T Consensus       248 --~~~~~~  253 (257)
T cd05040         248 --FAALRE  253 (257)
T ss_pred             --HHHHHH
Confidence              888865

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=6e-41  Score=323.67  Aligned_cols=259  Identities=17%  Similarity=0.223  Sum_probs=203.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++++.||+|+||+||+|.+..........+++|.+...  ........+..|+.+++.++||||+++++++.. 
T Consensus         4 ~~~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-   80 (279)
T cd05111           4 LKETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR--SGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-   80 (279)
T ss_pred             CCHhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccc--cchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-
Confidence            45578999999999999999999986422222235778877432  122334566678888899999999999998864 


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...++||||+.+|+|.+++.... ..+++..+..++.||+.||.|||++|++||||||+|||++.++.+||+|||+++..
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~  159 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLL  159 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceec
Confidence            45789999999999999987642 56899999999999999999999999999999999999999999999999997644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                    ......
T Consensus       160 ~~~~~~--------------------------------------------------------------------~~~~~~  171 (279)
T cd05111         160 YPDDKK--------------------------------------------------------------------YFYSEH  171 (279)
T ss_pred             cCCCcc--------------------------------------------------------------------cccCCC
Confidence            211100                                                                    000122


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .|+..|+|||++.+..++.++|||||||++|||++ |..||.+...... ..++......+....++.++.+++.+||..
T Consensus       172 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~c~~~  250 (279)
T cd05111         172 KTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEV-PDLLEKGERLAQPQICTIDVYMVMVKCWMI  250 (279)
T ss_pred             CCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHH-HHHHHCCCcCCCCCCCCHHHHHHHHHHcCC
Confidence            47788999999998889999999999999999998 9999987655443 333333333344445778899999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++||+    +.++++
T Consensus       251 ~p~~Rps----~~el~~  263 (279)
T cd05111         251 DENVRPT----FKELAN  263 (279)
T ss_pred             CcccCcC----HHHHHH
Confidence            9999999    888766

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.3e-41  Score=335.57  Aligned_cols=258  Identities=22%  Similarity=0.342  Sum_probs=205.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC---
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP---  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~---  158 (457)
                      .+|.+.+.||+|+||+||+|.+.    .+++.||||.+..... .......+..|+++|+.++|+||+++++++...   
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~   79 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNS----ETNEKVAIKKIANAFD-NRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHRE   79 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEec----CCCCeEEEEEeccccc-ccchhHHHHHHHHHHHhcCCCCccchHHheeccccc
Confidence            47999999999999999999876    4788999999865322 222345567799999999999999999988644   


Q ss_pred             --CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          159 --RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       159 --~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                        ...||||||+ +++|..++...  +.+++..+..++.||+.||.|||+++++||||||+||+++.++.+||+|||++.
T Consensus        80 ~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  156 (337)
T cd07858          80 AFNDVYIVYELM-DTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             ccCcEEEEEeCC-CCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCcccc
Confidence              3579999999 57888877654  679999999999999999999999999999999999999999999999999975


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                      ...
T Consensus       157 ~~~~~~~----------------------------------------------------------------------~~~  166 (337)
T cd07858         157 TTSEKGD----------------------------------------------------------------------FMT  166 (337)
T ss_pred             ccCCCcc----------------------------------------------------------------------ccc
Confidence            4321100                                                                      001


Q ss_pred             cccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc----------------------
Q 012762          317 SFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR----------------------  373 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~----------------------  373 (457)
                      ...|+..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+.......+...                      
T Consensus       167 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (337)
T cd07858         167 EYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIR  246 (337)
T ss_pred             ccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHH
Confidence            2357889999999875 45899999999999999999999999775433222221110                      


Q ss_pred             -ccCCC------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          374 -ALEFP------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       374 -~~~~~------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                       ....+      ..+.++.++.++|++||..||++||+    +.++++||||..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps----~~ell~h~~~~~~  297 (337)
T cd07858         247 SLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRIT----VEEALAHPYLASL  297 (337)
T ss_pred             hcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccC----HHHHHcCcchhhh
Confidence             00000      12357788999999999999999999    9999999999864

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=9.5e-41  Score=319.79  Aligned_cols=260  Identities=20%  Similarity=0.294  Sum_probs=210.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|+..+.||+|+||.||+|.++... .....+|+|.+....  .......+..|+++++.++|+||+++++++...
T Consensus         2 i~~~~~~~~~~lg~g~~g~vy~~~~~~~~-~~~~~~~ik~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   78 (268)
T cd05063           2 IHPSHITKQKVIGAGEFGEVFRGILKMPG-RKEVAVAIKTLKPGY--TEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKF   78 (268)
T ss_pred             CChHHceEeeEecCCCCccEEEEEEecCC-CCceEEEEEeccccC--CHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccC
Confidence            34568999999999999999999986421 234579999986542  223345677899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||+++++|..++... .+.+++..+..++.|++.||+|||+.|++|+||||+||+++.++.+||+|||++...
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  157 (268)
T cd05063          79 KPAMIITEYMENGALDKYLRDH-DGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVL  157 (268)
T ss_pred             CCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceec
Confidence            9999999999999999888764 356899999999999999999999999999999999999999999999999997544


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                   ......
T Consensus       158 ~~~~~~~-------------------------------------------------------------------~~~~~~  170 (268)
T cd05063         158 EDDPEGT-------------------------------------------------------------------YTTSGG  170 (268)
T ss_pred             ccccccc-------------------------------------------------------------------eeccCC
Confidence            3211000                                                                   000001


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ..+..|+|||++.+..++.++|||||||++|||++ |..||...........+.. ....+....++.++.+++.+||+.
T Consensus       171 ~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~li~~c~~~  249 (268)
T cd05063         171 KIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAIND-GFRLPAPMDCPSAVYQLMLQCWQQ  249 (268)
T ss_pred             CcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHcCC
Confidence            23567999999998889999999999999999997 9999988776665555543 345555556889999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++||+    +.+|++
T Consensus       250 ~p~~Rp~----~~~i~~  262 (268)
T cd05063         250 DRARRPR----FVDIVN  262 (268)
T ss_pred             CcccCcC----HHHHHH
Confidence            9999999    777764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=6.2e-41  Score=329.65  Aligned_cols=254  Identities=23%  Similarity=0.319  Sum_probs=212.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|...+.||+|+||.||+|.+.    .++..||+|++.............+..|+++++.++|+||+++++++..+...|
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~----~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~  101 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDV----RTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAW  101 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEc----CCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEE
Confidence            4888999999999999999876    368899999987543333344566788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+. |+|.+++... ...+++..+..++.||+.||.|||+.||+||||+|+||+++.++.++|+|||++...... 
T Consensus       102 lv~e~~~-g~l~~~~~~~-~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~-  178 (317)
T cd06635         102 LVMEYCL-GSASDLLEVH-KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA-  178 (317)
T ss_pred             EEEeCCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCc-
Confidence            9999995 5777666543 356899999999999999999999999999999999999999999999999986432210 


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                                                                                               ....|+.
T Consensus       179 -------------------------------------------------------------------------~~~~~~~  185 (317)
T cd06635         179 -------------------------------------------------------------------------NSFVGTP  185 (317)
T ss_pred             -------------------------------------------------------------------------ccccCCc
Confidence                                                                                     0124888


Q ss_pred             CccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          323 EYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       323 ~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      .|+|||++.   ...++.++|||||||++|||++|..||...........+............++..+.+++.+||+.+|
T Consensus       186 ~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p  265 (317)
T cd06635         186 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIP  265 (317)
T ss_pred             cccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCc
Confidence            999999984   34578899999999999999999999988766666666665544444444678889999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+||+    +.++++|+|+..
T Consensus       266 ~~Rpt----~~~il~~~~~~~  282 (317)
T cd06635         266 QDRPT----SEELLKHMFVLR  282 (317)
T ss_pred             ccCcC----HHHHHhChhhhc
Confidence            99999    999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=7.7e-41  Score=325.85  Aligned_cols=254  Identities=21%  Similarity=0.298  Sum_probs=204.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      ++|++.+.||+|+||.||+|.++..  .....+++|.++..  ........+..|++++.++ +||||+++++++...+.
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~--~~~~~~~ik~~~~~--~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~   77 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKD--GLKMNAAIKMLKEF--ASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGY   77 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCC--CCcceeEEEEcccc--CCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCc
Confidence            5899999999999999999987632  12235788887632  2223445678899999999 79999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~  226 (457)
                      .|+||||+++++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++.
T Consensus        78 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~  157 (297)
T cd05089          78 LYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLA  157 (297)
T ss_pred             ceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCe
Confidence            999999999999999886532              135888999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      +||+|||++........                                                               
T Consensus       158 ~kl~dfg~~~~~~~~~~---------------------------------------------------------------  174 (297)
T cd05089         158 SKIADFGLSRGEEVYVK---------------------------------------------------------------  174 (297)
T ss_pred             EEECCcCCCccccceec---------------------------------------------------------------
Confidence            99999998742210000                                                               


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                              ......+..|+|||++.+..++.++|||||||++|||++ |..||...........+... ...+....++.
T Consensus       175 --------~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~  245 (297)
T cd05089         175 --------KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQG-YRMEKPRNCDD  245 (297)
T ss_pred             --------cCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCCH
Confidence                    000123557999999998889999999999999999997 99999887766655554433 33333445889


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++.+|+.+||..||.+||+    ++++++.
T Consensus       246 ~~~~li~~~l~~~p~~Rp~----~~~i~~~  271 (297)
T cd05089         246 EVYELMRQCWRDRPYERPP----FAQISVQ  271 (297)
T ss_pred             HHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            9999999999999999999    7777654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-40  Score=314.82  Aligned_cols=254  Identities=27%  Similarity=0.461  Sum_probs=215.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.+.+.||+|++|.||+|.+.    ..++.||+|.+...... ......+..|++++++++|+||+++++++...+..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNL----ETGDFVAIKQISLEKIK-EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLY   75 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEc----CCCcEEEEEEecccccC-HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEE
Confidence            5889999999999999999876    36788999999766432 234567888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|.+++...  ..+++..+..++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++.......
T Consensus        76 ~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (254)
T cd06627          76 IILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS  153 (254)
T ss_pred             EEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCc
Confidence            999999999999988775  679999999999999999999999999999999999999999999999999976543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                      .....|+.
T Consensus       154 ~~----------------------------------------------------------------------~~~~~~~~  163 (254)
T cd06627         154 KD----------------------------------------------------------------------DASVVGTP  163 (254)
T ss_pred             cc----------------------------------------------------------------------ccccccch
Confidence            10                                                                      01235888


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .|+|||.+.+..++.++|||+||+++|+|++|..||................ ..+....++..+.+++.+||..+|++|
T Consensus       164 ~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R  242 (254)
T cd06627         164 YWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDD-HPPLPEGISPELKDFLMQCFQKDPNLR  242 (254)
T ss_pred             hhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccC-CCCCCCCCCHHHHHHHHHHHhCChhhC
Confidence            9999999988888999999999999999999999998766554444443222 222334578899999999999999999


Q ss_pred             CCCCcChHHHhcCCCC
Q 012762          403 MGSKMGATAIKRHQFF  418 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f  418 (457)
                      |+    +.+++.||||
T Consensus       243 ~~----~~~~l~~~~~  254 (254)
T cd06627         243 PT----AKQLLKHPWI  254 (254)
T ss_pred             cC----HHHHhcCCCC
Confidence            99    9999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=9.8e-41  Score=322.44  Aligned_cols=254  Identities=27%  Similarity=0.408  Sum_probs=206.2

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEEcCCc
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~~~~~  160 (457)
                      |++.+.||+|+||.||+|+++    .++..||+|++..... .......+..|+++++++   +|+||+++++++...+.
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~----~~~~~~aiK~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   75 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDL----NTGRFVALKKVRVPLS-EEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRT   75 (287)
T ss_pred             CeEEEEecccCceEEEEEEEC----CCCCEEEEEEeccccc-cchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccC
Confidence            678999999999999999986    3688999999975432 222234455688877766   59999999999988776


Q ss_pred             -----EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          161 -----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       161 -----~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                           .+++|||+. ++|..++.......+++..++.++.||+.||.|||+.+++|+||+|+||+++.++.++|+|||++
T Consensus        76 ~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~  154 (287)
T cd07838          76 DRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA  154 (287)
T ss_pred             CCCceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcc
Confidence                 899999995 58988887765557999999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                       .
T Consensus       155 ~~~~~~~~-----------------------------------------------------------------------~  163 (287)
T cd07838         155 RIYSFEMA-----------------------------------------------------------------------L  163 (287)
T ss_pred             eeccCCcc-----------------------------------------------------------------------c
Confidence            54321100                                                                       0


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----CC-----------C
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----FP-----------K  379 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----~~-----------~  379 (457)
                      ....++..|+|||++.+..++.++|||||||++|+|++|.+||.+....+.+.++......     ++           .
T Consensus       164 ~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (287)
T cd07838         164 TSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPS  243 (287)
T ss_pred             ccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhccc
Confidence            0124788999999999988999999999999999999999999987776666655542110     00           0


Q ss_pred             ---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 ---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 ---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                               ...++..+.++|.+||..||.+||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~----~~~il~~~~~  287 (287)
T cd07838         244 YTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRIS----AFEALQHPYF  287 (287)
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhccCCccCCC----HHHHhcCcCC
Confidence                     0124567889999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=7.9e-41  Score=323.47  Aligned_cols=259  Identities=22%  Similarity=0.291  Sum_probs=205.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--Cc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--RW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~  160 (457)
                      -|++++.||+|+||.||+|.+......++..||+|.++...  .......+.+|+++|+.++|+||+++++++...  ..
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc--cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            47899999999999999998765445678899999986432  223446788899999999999999999998775  56


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .++||||++|++|..++.... ..+++..+..++.||+.||.|||++||+||||||+||+++.++.++|+|||++.....
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            899999999999999886642 3589999999999999999999999999999999999999999999999999765432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ......                                                                   ......|
T Consensus       162 ~~~~~~-------------------------------------------------------------------~~~~~~~  174 (284)
T cd05079         162 DKEYYT-------------------------------------------------------------------VKDDLDS  174 (284)
T ss_pred             Ccccee-------------------------------------------------------------------ecCCCCC
Confidence            111000                                                                   0002347


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC--------------hHHHHHHHHhcccCCCCCCCCChH
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--------------HELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      +..|+|||++.+..++.++|||||||++|||+++..|+....              ........+......+....++..
T Consensus       175 ~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd05079         175 PVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEE  254 (284)
T ss_pred             CccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHH
Confidence            788999999998889999999999999999999877653211              111122222333344445568899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.+|+.+||+.||++||+    +.+++++
T Consensus       255 ~~~li~~~l~~~p~~Rpt----~~~il~~  279 (284)
T cd05079         255 VYQLMRKCWEFQPSKRTT----FQNLIEG  279 (284)
T ss_pred             HHHHHHHHccCCcccCcC----HHHHHHH
Confidence            999999999999999999    8888764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-41  Score=325.97  Aligned_cols=262  Identities=21%  Similarity=0.321  Sum_probs=205.6

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC----------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS----------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL  148 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~----------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI  148 (457)
                      +...+|++.++||+|+||.||+|++....          ......||+|.+....  .......+.+|+++|++++|+||
T Consensus         2 ~~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~ei~~l~~l~h~~i   79 (295)
T cd05097           2 FPRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV--TKTARNDFLKEIKIMSRLKNPNI   79 (295)
T ss_pred             CchHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCc
Confidence            34568999999999999999999875311          1223468999987542  23345568889999999999999


Q ss_pred             ceEEEEEEcCCcEEEEEeecCCCChHHHHHhCC----------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCC
Q 012762          149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP----------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN  218 (457)
Q Consensus       149 v~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~----------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~N  218 (457)
                      +++++++...+..|+||||+.+++|.+++....          ...+++..+..++.|++.||.|||++|++|+||||+|
T Consensus        80 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~N  159 (295)
T cd05097          80 IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRN  159 (295)
T ss_pred             CeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhh
Confidence            999999999999999999999999998886532          1236788899999999999999999999999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ||++.++.+||+|||++..........                                                     
T Consensus       160 ill~~~~~~kl~dfg~~~~~~~~~~~~-----------------------------------------------------  186 (295)
T cd05097         160 CLVGNHYTIKIADFGMSRNLYSGDYYR-----------------------------------------------------  186 (295)
T ss_pred             EEEcCCCcEEecccccccccccCccee-----------------------------------------------------
Confidence            999999999999999975432110000                                                     


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc--CCCCCCCCChHHHHHHHHh----
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY--GTTPFKGIDHELTLANVVA----  372 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt--G~~Pf~~~~~~~~~~~~~~----  372 (457)
                                     ......++..|+|||++.+..++.++|||||||++|+|++  |..||...........+..    
T Consensus       187 ---------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~  251 (295)
T cd05097         187 ---------------IQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRN  251 (295)
T ss_pred             ---------------ccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhh
Confidence                           0001235778999999998889999999999999999987  7789987666555444322    


Q ss_pred             --cccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          373 --RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       373 --~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                        ..........++..+.+|+.+||..||++||+    +++|++
T Consensus       252 ~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs----~~~i~~  291 (295)
T cd05097         252 QGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPT----FNKIHH  291 (295)
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHcCCCchhCcC----HHHHHH
Confidence              11112233457889999999999999999999    777754

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1.3e-40  Score=321.14  Aligned_cols=261  Identities=17%  Similarity=0.220  Sum_probs=211.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-  157 (457)
                      +..++|++.+.||+|+||.||+|.+.......+..|++|++...  ........+.+|++++++++|+||+++++++.. 
T Consensus         3 ~~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~--~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~   80 (280)
T cd05043           3 ISRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH--ASEIQVTLLLQESCLLYGLSHQNILPILHVCIED   80 (280)
T ss_pred             cchhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCC--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Confidence            45678999999999999999999987533334788999998643  233445667889999999999999999998765 


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCC------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPD------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      +...++++||+.+++|..++.....      ..+++..+..++.||+.||+|||+.+++||||||+||+++.++.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          81 GEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECC
Confidence            5678999999999999988876432      4589999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++..........                                                                 
T Consensus       161 ~g~~~~~~~~~~~~~-----------------------------------------------------------------  175 (280)
T cd05043         161 NALSRDLFPMDYHCL-----------------------------------------------------------------  175 (280)
T ss_pred             CCCcccccCCceEEe-----------------------------------------------------------------
Confidence            999865432111000                                                                 


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                         .....++..|+|||++.+..++.++|||||||++||+++ |+.||.......... .+......+....+++++.++
T Consensus       176 ---~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  251 (280)
T cd05043         176 ---GDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAA-YLKDGYRLAQPINCPDELFAV  251 (280)
T ss_pred             ---CCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHH-HHHcCCCCCCCCcCCHHHHHH
Confidence               001135778999999998889999999999999999998 999998765544443 344444555555678999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +.+||..||++||+    +.++++
T Consensus       252 i~~~l~~~p~~Rps----~~~~~~  271 (280)
T cd05043         252 MACCWALDPEERPS----FSQLVQ  271 (280)
T ss_pred             HHHHcCCChhhCCC----HHHHHH
Confidence            99999999999999    777764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=7.7e-41  Score=331.42  Aligned_cols=274  Identities=24%  Similarity=0.290  Sum_probs=210.0

Q ss_pred             CCce-eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhh-----------HHHHHHHHHHHHHHcCCCCCc
Q 012762           82 SDLR-FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN-----------KESRARIEREILEMLDHPFLP  149 (457)
Q Consensus        82 ~~~~-~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~-----------~~~~~~~E~~il~~l~H~nIv  149 (457)
                      ++|. +.+.||.|+||+||+|.++    ..++.||+|++.........           ....+.+|+++++.++|+||+
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   83 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDT----LTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIM   83 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEEC----CCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCccee
Confidence            3565 4577999999999999976    37889999998654322111           122467799999999999999


Q ss_pred             eEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEE
Q 012762          150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       150 ~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl  229 (457)
                      ++++++..++..|+||||+. ++|..++...  ..+++..+..++.||+.||.|||+.||+|+||||+||+++.++.++|
T Consensus        84 ~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl  160 (335)
T PTZ00024         84 GLVDVYVEGDFINLVMDIMA-SDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKI  160 (335)
T ss_pred             eeeEEEecCCcEEEEEeccc-cCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEE
Confidence            99999999999999999995 6898887654  56899999999999999999999999999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||++.................                                                        .
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~  184 (335)
T PTZ00024        161 ADFGLARRYGYPPYSDTLSKDET--------------------------------------------------------M  184 (335)
T ss_pred             CCccceeeccccccccccccccc--------------------------------------------------------c
Confidence            99999865542211110000000                                                        0


Q ss_pred             CCccccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC----------
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP----------  378 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~----------  378 (457)
                      ..........++..|+|||++.+.. ++.++|||||||++|||++|..||.+......+..+........          
T Consensus       185 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  264 (335)
T PTZ00024        185 QRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKL  264 (335)
T ss_pred             cccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhc
Confidence            0000111224788999999997654 68999999999999999999999988776655554433111000          


Q ss_pred             ----------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          379 ----------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       379 ----------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                                      .....+.++.++|.+||..||++||+    ++|++.||||+...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s----~~~~l~~~~~~~~~  320 (335)
T PTZ00024        265 PLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERIS----AKEALKHEYFKSDP  320 (335)
T ss_pred             ccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccC----HHHHhcCcccCCCC
Confidence                            01234678999999999999999999    99999999999643

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=4.9e-41  Score=333.98  Aligned_cols=259  Identities=22%  Similarity=0.320  Sum_probs=203.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC---
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP---  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~---  158 (457)
                      .+|.+.+.||.|+||.||+|.++    .++..||+|.+.....   .....+..|++++++++||||+++++++...   
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~----~~~~~v~iK~i~~~~~---~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~   77 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDS----DCDKRVAVKKIVLTDP---QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSD   77 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEEC----CCCcEEEEEEEecCCC---chHHHHHHHHHHHHhcCCCcchhhHhhhcccccc
Confidence            58999999999999999999876    4788999999865432   3445677799999999999999999876543   


Q ss_pred             -----------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCC
Q 012762          159 -----------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGH  226 (457)
Q Consensus       159 -----------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~  226 (457)
                                 ...|+||||+. ++|..++..   ..+++..++.++.||+.||.|||+.||+||||||+||+++. ++.
T Consensus        78 ~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~  153 (342)
T cd07854          78 LTEDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLV  153 (342)
T ss_pred             cccccccccccceEEEEeeccc-ccHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCce
Confidence                       35799999995 688877754   46899999999999999999999999999999999999985 457


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      ++|+|||++...........                                                            
T Consensus       154 ~kl~dfg~~~~~~~~~~~~~------------------------------------------------------------  173 (342)
T cd07854         154 LKIGDFGLARIVDPHYSHKG------------------------------------------------------------  173 (342)
T ss_pred             EEECCcccceecCCcccccc------------------------------------------------------------
Confidence            89999999754321110000                                                            


Q ss_pred             cccCCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-----------
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-----------  374 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-----------  374 (457)
                             ......|+..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.........++...           
T Consensus       174 -------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
T cd07854         174 -------YLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNEL  246 (342)
T ss_pred             -------ccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhh
Confidence                   0001247889999998765 457889999999999999999999998766544433332211           


Q ss_pred             -----------cCCCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          375 -----------LEFPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       375 -----------~~~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                                 ...+.      ...++.++.+||.+||..||.+||+    +.++++||||+...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~ell~h~~~~~~~  307 (342)
T cd07854         247 LNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLT----AEEALMHPYMSCYS  307 (342)
T ss_pred             hhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccC----HHHHhCCCcccccc
Confidence                       00000      1246778999999999999999999    99999999998643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-42  Score=344.21  Aligned_cols=254  Identities=24%  Similarity=0.396  Sum_probs=210.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc--
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-SRNKESRARIEREILEMLDHPFLPTLYATLDCPRW--  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~--  160 (457)
                      .++..+||+|+|-+||+|.+.    .+|..||=--++..++. +....+++..|+++|+.|+|+||+++|+++.+...  
T Consensus        42 ~k~~evLGrGafKtVYka~De----~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~  117 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDE----EEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKT  117 (632)
T ss_pred             eehhhhcccccceeeeecccc----ccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCce
Confidence            356789999999999999875    58888874433333332 23345889999999999999999999999977655  


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccC-CCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSD-GHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~-~~vkl~DFG~s~~  237 (457)
                      +.+|+|++..|+|+.++++.  +++....++.|++||+.||.|||++.  |||||||.+||||+.+ |.|||+|+|||..
T Consensus       118 in~iTEL~TSGtLr~Y~kk~--~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl  195 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKH--RRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATL  195 (632)
T ss_pred             eeeeeecccCCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHH
Confidence            78999999999999999987  78999999999999999999999885  9999999999999865 8999999999976


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ...+...                                                                        .
T Consensus       196 ~r~s~ak------------------------------------------------------------------------s  203 (632)
T KOG0584|consen  196 LRKSHAK------------------------------------------------------------------------S  203 (632)
T ss_pred             hhccccc------------------------------------------------------------------------e
Confidence            6533221                                                                        2


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .+|||.|||||+.. ..|+..+||||||+.++||+|+.+||..-.+ .+++.++..+..+-.-...-.+++++||.+||.
T Consensus       204 vIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~  282 (632)
T KOG0584|consen  204 VIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLA  282 (632)
T ss_pred             eccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhc
Confidence            47999999999997 6799999999999999999999999976544 456666665543322222235689999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      . .++|++    +.|||+||||..-
T Consensus       283 ~-~~~R~s----a~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  283 T-KSERLS----AKELLKDPFFDED  302 (632)
T ss_pred             C-chhccC----HHHHhhChhhccc
Confidence            9 999999    9999999999874

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.4e-40  Score=315.23  Aligned_cols=257  Identities=28%  Similarity=0.448  Sum_probs=213.4

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--Cc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--RW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~  160 (457)
                      +|++.+.||+|++|.||+|.+.    .++..|++|++...... ......+.+|++++++++|+||+++++.+...  +.
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDK----DTGELMAVKSVELSGDS-EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNT   75 (260)
T ss_pred             CceeeeEeeecCceEEEEEEEC----CCCcEEEEEEeeccccc-hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCe
Confidence            4888999999999999999876    37889999999765432 34567788899999999999999999999988  88


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +++||||+++++|.+++...  ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||.+.....
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  153 (260)
T cd06606          76 LNIFLEYVSGGSLSSLLKKF--GKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGD  153 (260)
T ss_pred             EEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccc
Confidence            99999999999999998875  3799999999999999999999999999999999999999999999999998765432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                    .......+
T Consensus       154 ~~~~--------------------------------------------------------------------~~~~~~~~  165 (260)
T cd06606         154 IETG--------------------------------------------------------------------EGTGSVRG  165 (260)
T ss_pred             cccc--------------------------------------------------------------------ccccCCCC
Confidence            2110                                                                    00012358


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|+|||.+.+..++.++||||||+++|+|++|..||...... .....+............++..+.+++.+||..||
T Consensus       166 ~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p  245 (260)
T cd06606         166 TPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDP  245 (260)
T ss_pred             CccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCCh
Confidence            89999999999888999999999999999999999999876522 22222222122222334568899999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f  418 (457)
                      ++||+    +.++++||||
T Consensus       246 ~~Rp~----~~~ll~~~~~  260 (260)
T cd06606         246 KKRPT----ADELLQHPFL  260 (260)
T ss_pred             hhCCC----HHHHhhCCCC
Confidence            99999    9999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.3e-41  Score=334.39  Aligned_cols=257  Identities=28%  Similarity=0.396  Sum_probs=205.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      ++|.+.+.||+|+||.||+|.++    .+|..||+|++.+.. ........+.+|+++++.++|+||+++++++....  
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~   89 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDK----RTGEKVAIKKLSRPF-QSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSG   89 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeC----CCCcEEEEEEecCcc-ccccchhHHHHHHHHHHhcCCCCccchhheecccccC
Confidence            58999999999999999999876    478899999986532 22233455778999999999999999999986543  


Q ss_pred             ----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          160 ----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       160 ----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                          .+|+||||+ ..+|..++.    ..+++..+..++.|++.||.|||+.||+||||||+|||++.++.++|+|||++
T Consensus        90 ~~~~~~~lv~e~~-~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~  164 (342)
T cd07879          90 DEFQDFYLVMPYM-QTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLA  164 (342)
T ss_pred             CCCceEEEEeccc-ccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCC
Confidence                469999999 457765542    45899999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.....                                                                         .
T Consensus       165 ~~~~~~-------------------------------------------------------------------------~  171 (342)
T cd07879         165 RHADAE-------------------------------------------------------------------------M  171 (342)
T ss_pred             cCCCCC-------------------------------------------------------------------------C
Confidence            533210                                                                         0


Q ss_pred             ccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--------------------
Q 012762          316 MSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--------------------  374 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--------------------  374 (457)
                      ....|+..|+|||++.+ ..++.++|||||||++|||++|+.||.+......+..++...                    
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T cd07879         172 TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYI  251 (342)
T ss_pred             CCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHH
Confidence            12357889999999876 458899999999999999999999998866444443333210                    


Q ss_pred             ---cCCCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          375 ---LEFPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       375 ---~~~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                         ...+.      .+..+.++.+||.+||+.||++||+    +.+++.||||+.+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~----~~e~l~h~~f~~~~~~~  307 (342)
T cd07879         252 KSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLT----ATEALEHPYFDSFRDAD  307 (342)
T ss_pred             hhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcC----HHHHhcCcchhhccccc
Confidence               00000      1235678999999999999999999    99999999999887643

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=1.1e-40  Score=330.32  Aligned_cols=266  Identities=20%  Similarity=0.279  Sum_probs=213.1

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..+.+...+|++.+.||+|+||.||+|++...+.   ..+..||+|++...  ........+.+|+++++++ +|+||++
T Consensus         5 ~~~~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~   82 (334)
T cd05100           5 PKWELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDD--ATDKDLSDLVSEMEMMKMIGKHKNIIN   82 (334)
T ss_pred             cccccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccc--cCHHHHHHHHHHHHHHHhhcCCCCeee
Confidence            4567777889999999999999999998754322   22347899988643  1223456778899999999 8999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++...+..|+||||+.+++|.+++....              ...++...+..++.||+.||.|||++||+||||||
T Consensus        83 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp  162 (334)
T cd05100          83 LLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAA  162 (334)
T ss_pred             eeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeecccccc
Confidence            9999999999999999999999999887532              23477888999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +|||++.++.+||+|||+++.........                                                   
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~---------------------------------------------------  191 (334)
T cd05100         163 RNVLVTEDNVMKIADFGLARDVHNIDYYK---------------------------------------------------  191 (334)
T ss_pred             ceEEEcCCCcEEECCcccceecccccccc---------------------------------------------------
Confidence            99999999999999999976443211000                                                   


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                       ......++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+... .
T Consensus       192 -----------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~  253 (334)
T cd05100         192 -----------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEG-H  253 (334)
T ss_pred             -----------------cccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-C
Confidence                             0001124568999999999889999999999999999998 89999887766655554433 3


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ..+....++..+.+++.+||..+|++||+    +.+++++
T Consensus       254 ~~~~~~~~~~~l~~li~~cl~~~p~~Rps----~~ell~~  289 (334)
T cd05100         254 RMDKPANCTHELYMIMRECWHAVPSQRPT----FKQLVED  289 (334)
T ss_pred             CCCCCCCCCHHHHHHHHHHcccChhhCcC----HHHHHHH
Confidence            33344457889999999999999999999    7777765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=7.3e-41  Score=333.11  Aligned_cols=254  Identities=28%  Similarity=0.398  Sum_probs=204.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|.+.+.||+|+||.||+|.+.    .+++.||+|++.+... .......+.+|++++++++|+||+++++++...  
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~   90 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDT----KTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS   90 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEc----CCCeEEEEEEecCcch-hhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccc
Confidence            368999999999999999999876    3788999999875322 222345677799999999999999999988543  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          ...|++++++ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+
T Consensus        91 ~~~~~~~~lv~~~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~  166 (345)
T cd07877          91 LEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  166 (345)
T ss_pred             ccccccEEEEehhc-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccc
Confidence                3478999988 8899887765   4589999999999999999999999999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       167 ~~~~~~~-------------------------------------------------------------------------  173 (345)
T cd07877         167 ARHTDDE-------------------------------------------------------------------------  173 (345)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            7532210                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc------------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL------------------  375 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~------------------  375 (457)
                      .....|+..|+|||++.+ ..++.++|||||||++|+|++|+.||........+..++....                  
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (345)
T cd07877         174 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNY  253 (345)
T ss_pred             ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHH
Confidence            012357889999999876 4578999999999999999999999987655443333322111                  


Q ss_pred             -----CCCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          376 -----EFPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       376 -----~~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                           ..+.      ....+.+++++|.+||..||.+||+    +.+++.||||+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t----~~e~l~h~~f~~  305 (345)
T cd07877         254 IQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQ  305 (345)
T ss_pred             HHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCC----HHHHhcChhhhh
Confidence                 0010      0135678999999999999999999    999999999985

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.3e-40  Score=322.91  Aligned_cols=257  Identities=19%  Similarity=0.297  Sum_probs=206.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +|++.+.||+|+||+||+|.+.... ......+|+|.+.....  ......+..|+++++.++||||+++++.+...+..
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   78 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS--SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPL   78 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC--HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCc
Confidence            5889999999999999999875322 22346789998865422  23346678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCe
Q 012762          162 CLLTEFCPGGDLHVLRQRQP----------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV  219 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~----------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NI  219 (457)
                      ++||||+.+++|..++....                      ...+++..+..++.|++.||.|||+.||+||||||+||
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~ni  158 (290)
T cd05045          79 LLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNV  158 (290)
T ss_pred             EEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheE
Confidence            99999999999998876421                      13578889999999999999999999999999999999


Q ss_pred             EEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          220 LVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       220 ll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                      |++.++.+||+|||+++.........                                                      
T Consensus       159 ll~~~~~~kl~dfg~~~~~~~~~~~~------------------------------------------------------  184 (290)
T cd05045         159 LVAEGRKMKISDFGLSRDVYEEDSYV------------------------------------------------------  184 (290)
T ss_pred             EEcCCCcEEeccccccccccCccchh------------------------------------------------------
Confidence            99999999999999976442111000                                                      


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCC
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFP  378 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~  378 (457)
                                    ......++..|+|||++.+..++.++|||||||++|||++ |..||.+........ .+......+
T Consensus       185 --------------~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~-~~~~~~~~~  249 (290)
T cd05045         185 --------------KRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFN-LLKTGYRME  249 (290)
T ss_pred             --------------cccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH-HHhCCCCCC
Confidence                          0001135678999999988889999999999999999998 999998766555443 344444555


Q ss_pred             CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       379 ~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ....++.++.+++.+||+.||++||+    +.++++
T Consensus       250 ~~~~~~~~~~~~i~~cl~~~P~~Rp~----~~~i~~  281 (290)
T cd05045         250 RPENCSEEMYNLMLTCWKQEPDKRPT----FADISK  281 (290)
T ss_pred             CCCCCCHHHHHHHHHHccCCcccCCC----HHHHHH
Confidence            55568899999999999999999999    777764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2e-40  Score=320.40  Aligned_cols=258  Identities=23%  Similarity=0.358  Sum_probs=204.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--CC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--PR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~~  159 (457)
                      .+|++++.||+|+||+||+|..+..+..++..||+|.+....   ......+.+|+++|+.++||||+++++++..  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~   80 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST---AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR   80 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCC
Confidence            479999999999999999998754455678899999986532   2345677889999999999999999998743  34


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|+||||+++++|.+++... ...+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++....
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~-~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKH-RERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccccc
Confidence            689999999999999988754 2458999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ........                                                                   .....
T Consensus       160 ~~~~~~~~-------------------------------------------------------------------~~~~~  172 (284)
T cd05081         160 QDKEYYKV-------------------------------------------------------------------REPGE  172 (284)
T ss_pred             CCCcceee-------------------------------------------------------------------cCCCC
Confidence            21110000                                                                   00012


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH---------------HHHHHHHhcccCCCCCCCCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------------LTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------------~~~~~~~~~~~~~~~~~~~~  384 (457)
                      ++..|+|||++.+..++.++|||||||++|||++|..++......               ..+...+.....++....++
T Consensus       173 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd05081         173 SPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCP  252 (284)
T ss_pred             CceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCC
Confidence            455699999999888999999999999999999987776433211               11222333444445556688


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .++.+|+.+||..||++|||    +.+|++
T Consensus       253 ~~~~~li~~cl~~~p~~Rpt----~~ei~~  278 (284)
T cd05081         253 AEIYAIMKECWNNDPSQRPS----FSELAL  278 (284)
T ss_pred             HHHHHHHHHHccCChhhCCC----HHHHHH
Confidence            99999999999999999999    888865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-43  Score=373.18  Aligned_cols=261  Identities=29%  Similarity=0.471  Sum_probs=219.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +++-...||.|.||.||-|...    .+|...|+|-++.+... ......+.+|..+|..|+|||+|++||+=...+.++
T Consensus      1236 rWqrg~~Ig~G~fG~VYtavN~----~tGellAvKEI~iq~~~-~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~ 1310 (1509)
T KOG4645|consen 1236 RWQRGNFIGGGTFGKVYTAVNL----DTGELLAVKEIKIQDSD-HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVY 1310 (1509)
T ss_pred             eeccccccCCcceeeeEEeecC----CccchhhhhhhhcCccc-cccCcchHHHHHHHHhccCccccccCceeecHHHHH
Confidence            4555678999999999988866    58999999998776554 444567788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      |.||||+||+|.++++..  +-.++...+.+..|++.||.|||+.|||||||||+||+|+.+|.+|++|||.|+...+..
T Consensus      1311 IFMEyC~~GsLa~ll~~g--ri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~ 1388 (1509)
T KOG4645|consen 1311 IFMEYCEGGSLASLLEHG--RIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNA 1388 (1509)
T ss_pred             HHHHHhccCcHHHHHHhc--chhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCch
Confidence            999999999999998874  567888888999999999999999999999999999999999999999999987665432


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .+.                                                                  ......+.||+
T Consensus      1389 ~~~------------------------------------------------------------------~~el~~~~GT~ 1402 (1509)
T KOG4645|consen 1389 QTM------------------------------------------------------------------PGELQSMMGTP 1402 (1509)
T ss_pred             hcC------------------------------------------------------------------CHHHHhhcCCc
Confidence            111                                                                  11222467999


Q ss_pred             CccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          323 EYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       323 ~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      .|||||++.|.   +.+.+.||||||||+.||+||+.||...+++-.++..+...-..+.+..++.+.+++|.+||+.||
T Consensus      1403 ~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP 1482 (1509)
T KOG4645|consen 1403 MYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDP 1482 (1509)
T ss_pred             hhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCc
Confidence            99999999764   478899999999999999999999998877655544444433333344599999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++|.+    +.|||.|.|-+.
T Consensus      1483 ~~Rw~----~~qlle~~f~~~ 1499 (1509)
T KOG4645|consen 1483 KMRWT----ASQLLEHAFGKS 1499 (1509)
T ss_pred             hhhhH----HHHHHHhhcccc
Confidence            99999    999999988663

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1e-40  Score=317.08  Aligned_cols=246  Identities=20%  Similarity=0.310  Sum_probs=204.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.+.||+|+||.||++..      +++.||+|++...     .....+.+|++++++++|+||+++++++..+
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~------~~~~~~iK~~~~~-----~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~   71 (254)
T cd05083           3 LNLQKLTLGEIIGEGEFGAVLQGEY------TGQKVAVKNIKCD-----VTAQAFLEETAVMTKLHHKNLVRLLGVILHN   71 (254)
T ss_pred             ccHHHceeeeeeccCCCCceEeccc------CCCceEEEeecCc-----chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC
Confidence            4567899999999999999998863      5778999998543     2335677899999999999999999998765


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                       ..|+||||+.+++|.+++.......+++..+..++.|++.||.|||+.|++||||||+||+++.++.++|+|||++...
T Consensus        72 -~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~  150 (254)
T cd05083          72 -GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVG  150 (254)
T ss_pred             -CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceec
Confidence             4799999999999999988765567899999999999999999999999999999999999999999999999987532


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                         ...
T Consensus       151 ~~~~-------------------------------------------------------------------------~~~  157 (254)
T cd05083         151 SMGV-------------------------------------------------------------------------DNS  157 (254)
T ss_pred             cccC-------------------------------------------------------------------------CCC
Confidence            1100                                                                         001


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      ..+..|+|||++.+..++.++|||||||++|||++ |..||...........+. ..........++..+.+++.+||..
T Consensus       158 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~  236 (254)
T cd05083         158 KLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVE-KGYRMEPPEGCPADVYVLMTSCWET  236 (254)
T ss_pred             CCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHh-CCCCCCCCCcCCHHHHHHHHHHcCC
Confidence            24567999999998889999999999999999997 999998877665554443 3344444456889999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      +|++||+    +.+|+.
T Consensus       237 ~p~~Rp~----~~~l~~  249 (254)
T cd05083         237 EPKKRPS----FHKLRE  249 (254)
T ss_pred             ChhhCcC----HHHHHH
Confidence            9999999    777764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.3e-40  Score=319.28  Aligned_cols=256  Identities=20%  Similarity=0.278  Sum_probs=201.8

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-----
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-----  158 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-----  158 (457)
                      |.+.++||+|+||.||+|.+...  .....||+|.++... ........+..|+++++.++|+||+++++++...     
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~--~~~~~~a~k~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   77 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQD--DSILKVAVKTMKIAI-CTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEG   77 (272)
T ss_pred             CccccccCcccCceEEEeEEccC--CCeeeEEEEecccCc-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccC
Confidence            35678999999999999987631  112368999886542 2234456778899999999999999999976432     


Q ss_pred             -CcEEEEEeecCCCChHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQ----PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~----~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                       ...++||||+.+++|..++...    ....+++..+..++.||+.||.|||++||+||||||+|||++.++.++|+|||
T Consensus        78 ~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          78 YPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCC
Confidence             2468999999999998776432    22458899999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.........                                                                    
T Consensus       158 ~~~~~~~~~~~~--------------------------------------------------------------------  169 (272)
T cd05075         158 LSKKIYNGDYYR--------------------------------------------------------------------  169 (272)
T ss_pred             cccccCccccee--------------------------------------------------------------------
Confidence            986543211000                                                                    


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ......+++.|++||++.+..++.++|||||||++|||++ |+.||.+.........+..+. ..+....++..+.+++.
T Consensus       170 ~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~  248 (272)
T cd05075         170 QGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGN-RLKQPPDCLDGLYSLMS  248 (272)
T ss_pred             cCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-CCCCCCCCCHHHHHHHH
Confidence            0001236778999999999889999999999999999999 899998877666555554432 33344568889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcC
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +||..||++||+    +.+|+++
T Consensus       249 ~~l~~~p~~Rps----~~~l~~~  267 (272)
T cd05075         249 SCWLLNPKDRPS----FETLRCE  267 (272)
T ss_pred             HHcCCCcccCcC----HHHHHHH
Confidence            999999999999    8888764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-41  Score=332.16  Aligned_cols=263  Identities=26%  Similarity=0.330  Sum_probs=201.9

Q ss_pred             CChhHHHHHHhhhcCCCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHH
Q 012762           56 DDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI  135 (457)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~  135 (457)
                      ....+..+..++.              +|.-...||+|+||.||+|...     ++..||||.+.......   ..+|..
T Consensus        63 ~~fs~~el~~AT~--------------~Fs~~~~ig~Ggfg~VYkG~l~-----~~~~vAVK~~~~~~~~~---~~eF~~  120 (361)
T KOG1187|consen   63 RSFSYDELRKATN--------------NFSESNLIGEGGFGTVYKGVLS-----DGTVVAVKRLSSNSGQG---EREFLN  120 (361)
T ss_pred             ceeeHHHHHHHHh--------------CCchhcceecCCCeEEEEEEEC-----CCCEEEEEEecCCCCcc---hhHHHH
Confidence            3455667777763              5666779999999999999985     56899999886543211   455999


Q ss_pred             HHHHHHHcCCCCCceEEEEEEcCC-cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---cee
Q 012762          136 EREILEMLDHPFLPTLYATLDCPR-WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG---IIY  211 (457)
Q Consensus       136 E~~il~~l~H~nIv~l~~~~~~~~-~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~---iiH  211 (457)
                      |+++|.+++|+|+|+++|||.+.+ ..+||+||+.+|+|.+.+.......++|.....|+.+++.||+|||...   |||
T Consensus       121 Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiH  200 (361)
T KOG1187|consen  121 EVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIH  200 (361)
T ss_pred             HHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEec
Confidence            999999999999999999999988 4999999999999999888754338899999999999999999999754   999


Q ss_pred             ecCCCCCeEEccCCCEEEeccCCCcCCCC-CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          212 RDLKPENVLVRSDGHIMLTDFDLSLKGDN-STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       212 rDIKp~NIll~~~~~vkl~DFG~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      ||||+.|||||++...||+|||+++.... .....                                             
T Consensus       201 rDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~---------------------------------------------  235 (361)
T KOG1187|consen  201 RDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVS---------------------------------------------  235 (361)
T ss_pred             CCCCHHHeeECCCCCEEccCccCcccCCcccccee---------------------------------------------
Confidence            99999999999999999999999854432 11100                                             


Q ss_pred             chhccccCCCCCCCcccccCCccccccc-cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC--hHH-H
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSF-VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--HEL-T  366 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~--~~~-~  366 (457)
                                                +. .||.+|++||++.....+.++||||||++|.||++|+.+.+...  ... .
T Consensus       236 --------------------------~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l  289 (361)
T KOG1187|consen  236 --------------------------TTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSL  289 (361)
T ss_pred             --------------------------eecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccH
Confidence                                      11 49999999999998889999999999999999999998887432  111 1


Q ss_pred             HH---HHHhc-cc---CCCC-C-CCCC--h---HHHHHHHHHhhhCCCCCCCCCcChHH
Q 012762          367 LA---NVVAR-AL---EFPK-E-PSVP--G---PAKDLIAQLLVKDPTRRMGSKMGATA  411 (457)
Q Consensus       367 ~~---~~~~~-~~---~~~~-~-~~~~--~---~~~~ll~~~L~~dP~~Rps~~~~~~~  411 (457)
                      ..   ..+.. .+   -.+. . ...+  .   .+..+...|++.+|.+||+|.+++.+
T Consensus       290 ~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~  348 (361)
T KOG1187|consen  290 VEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKE  348 (361)
T ss_pred             HHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHH
Confidence            11   11111 00   0011 0 1222  1   25678899999999999995554333

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-40  Score=315.74  Aligned_cols=252  Identities=23%  Similarity=0.351  Sum_probs=209.8

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||.||+|.+.... ..+..||+|++.......  ....+..|+++++.++|+||+++++++......++||||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~-~~~~~~~ik~~~~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   77 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKD-GKTTEVAVKTLKEDASEE--ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEY   77 (262)
T ss_pred             CccccCCceEEEEEEEecCC-CCCceEEeEeeccccchh--HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEe
Confidence            46899999999999986321 237889999997653322  466788899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCC-------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          168 CPGGDLHVLRQRQP-------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       168 ~~~~sL~~~~~~~~-------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +++++|..++....       ...+++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||.+.....
T Consensus        78 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          78 MEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             ccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence            99999999987642       36789999999999999999999999999999999999999999999999999865532


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                    .......+
T Consensus       158 ~~~~--------------------------------------------------------------------~~~~~~~~  169 (262)
T cd00192         158 DDYY--------------------------------------------------------------------RKKTGGKL  169 (262)
T ss_pred             cccc--------------------------------------------------------------------ccccCCCc
Confidence            1110                                                                    00012247


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +..|+|||.+.+..++.++|||||||++|+|++ |..||...........+.. .........++.++.+++.+||..||
T Consensus       170 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p  248 (262)
T cd00192         170 PIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRK-GYRLPKPEYCPDELYELMLSCWQLDP  248 (262)
T ss_pred             CccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc-CCCCCCCccCChHHHHHHHHHccCCc
Confidence            889999999998889999999999999999998 6999998876666555554 33444455678999999999999999


Q ss_pred             CCCCCCCcChHHHhcC
Q 012762          400 TRRMGSKMGATAIKRH  415 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~h  415 (457)
                      ++||+    +.|++++
T Consensus       249 ~~Rps----~~~l~~~  260 (262)
T cd00192         249 EDRPT----FSELVER  260 (262)
T ss_pred             ccCcC----HHHHHHh
Confidence            99999    9999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=6.6e-41  Score=325.73  Aligned_cols=252  Identities=27%  Similarity=0.447  Sum_probs=208.4

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLL  164 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV  164 (457)
                      ....+||+|+||.||++..+    .++..||+|.+....   ......+.+|+.+++.++|+||+++++++..++..|+|
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~----~~~~~v~iK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   95 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVK----SSGKLVAVKKMDLRK---QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV   95 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEc----CCCeEEEEEEecccc---hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEE
Confidence            33467999999999999876    478899999985432   23455678899999999999999999999999999999


Q ss_pred             EeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcc
Q 012762          165 TEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       165 ~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~  244 (457)
                      |||+++++|.+++..   ..+++..++.++.|++.||+|||+.|++|+||+|+||+++.++.++|+|||++........ 
T Consensus        96 ~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~-  171 (292)
T cd06657          96 MEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-  171 (292)
T ss_pred             EecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccc-
Confidence            999999999987754   4689999999999999999999999999999999999999999999999998643321100 


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                                                                                           ......|+..|
T Consensus       172 ---------------------------------------------------------------------~~~~~~~~~~y  182 (292)
T cd06657         172 ---------------------------------------------------------------------RRKSLVGTPYW  182 (292)
T ss_pred             ---------------------------------------------------------------------cccccccCccc
Confidence                                                                                 00123588999


Q ss_pred             cCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhCCCCCC
Q 012762          325 LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRM  403 (457)
Q Consensus       325 ~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~dP~~Rp  403 (457)
                      +|||++.+..++.++|+||||+++|+|++|..||.+.........+..... .+.....++..+.+++.+||..||.+||
T Consensus       183 ~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~  262 (292)
T cd06657         183 MAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRA  262 (292)
T ss_pred             cCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCc
Confidence            999999888889999999999999999999999987665544444332221 2223345788999999999999999999


Q ss_pred             CCCcChHHHhcCCCCCC
Q 012762          404 GSKMGATAIKRHQFFNG  420 (457)
Q Consensus       404 s~~~~~~~ll~hp~f~~  420 (457)
                      +    +.+++.||||..
T Consensus       263 ~----~~~ll~~~~~~~  275 (292)
T cd06657         263 T----AAELLKHPFLAK  275 (292)
T ss_pred             C----HHHHhcChHHhc
Confidence            9    999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=2.8e-40  Score=311.96  Aligned_cols=252  Identities=29%  Similarity=0.491  Sum_probs=211.9

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|.+.+.||+|++|.||+|.+.    .++..|++|++.....   .....+.+|+++++.++|+||+++++++..+...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~----~~~~~~~~k~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   73 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHK----RTGKEVAIKVIKLESK---EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELW   73 (253)
T ss_pred             CceeeeeeccCCceEEEEEEEC----CCCcEEEEEEecccch---hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEE
Confidence            5889999999999999999976    3688999999976432   35567888999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ++|||+++++|.+++.... ..+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.++|+|||++.......
T Consensus        74 l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          74 IVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             EEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccccccc
Confidence            9999999999999887743 578999999999999999999999999999999999999999999999999875443211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                       .....|+.
T Consensus       153 ~-----------------------------------------------------------------------~~~~~~~~  161 (253)
T cd05122         153 A-----------------------------------------------------------------------RNTMVGTP  161 (253)
T ss_pred             c-----------------------------------------------------------------------ccceecCC
Confidence            0                                                                       11235889


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-ccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-ALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|+|||.+.+..++.++||||||+++|+|++|+.||...+.......+... ....+....++..+.+++.+||..||++
T Consensus       162 ~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  241 (253)
T cd05122         162 YWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEK  241 (253)
T ss_pred             cccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhh
Confidence            999999999888899999999999999999999999876544433333322 2222233334788999999999999999


Q ss_pred             CCCCCcChHHHhcCCC
Q 012762          402 RMGSKMGATAIKRHQF  417 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~  417 (457)
                      ||+    +.++++|||
T Consensus       242 R~t----~~~~l~~~~  253 (253)
T cd05122         242 RPT----AEQLLKHPF  253 (253)
T ss_pred             CCC----HHHHhcCCC
Confidence            999    999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-40  Score=315.46  Aligned_cols=249  Identities=20%  Similarity=0.304  Sum_probs=201.2

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      ++||+|+||.||+|.+...+. .+..||+|.+......  .....+..|+++++.++|+||+++++++. .+..++||||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~-~~~~~~iK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~   76 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSG-KEVEVAVKTLKQEHIA--AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMEL   76 (257)
T ss_pred             CccCccCceeEEEeEeeccCC-CcceEEEEecccccch--HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEe
Confidence            479999999999998764321 3478999999765432  34566788999999999999999999876 4568999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|.+++...  ..+++..+..++.|++.||+|||..+++|+||||+|||++.++.+||+|||+++.......... 
T Consensus        77 ~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~-  153 (257)
T cd05060          77 APLGPLLKYLKKR--REIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYR-  153 (257)
T ss_pred             CCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccc-
Confidence            9999999998875  4689999999999999999999999999999999999999999999999999764421110000 


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......++..|+||
T Consensus       154 ------------------------------------------------------------------~~~~~~~~~~y~aP  167 (257)
T cd05060         154 ------------------------------------------------------------------ATTAGRWPLKWYAP  167 (257)
T ss_pred             ------------------------------------------------------------------cccCccccccccCH
Confidence                                                                              00001245689999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      |++.+..++.++|||||||++|+|++ |..||......+....+. .....+....++..+++++.+||..||++||+  
T Consensus       168 E~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~--  244 (257)
T cd05060         168 ECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLE-SGERLPRPEECPQEIYSIMLSCWKYRPEDRPT--  244 (257)
T ss_pred             HHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHH-cCCcCCCCCCCCHHHHHHHHHHhcCChhhCcC--
Confidence            99998889999999999999999997 999998876655544443 33344555568899999999999999999999  


Q ss_pred             cChHHHhc
Q 012762          407 MGATAIKR  414 (457)
Q Consensus       407 ~~~~~ll~  414 (457)
                        +.++++
T Consensus       245 --~~~l~~  250 (257)
T cd05060         245 --FSELES  250 (257)
T ss_pred             --HHHHHH
Confidence              777754

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.3e-40  Score=315.68  Aligned_cols=248  Identities=21%  Similarity=0.297  Sum_probs=198.1

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeec
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC  168 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~  168 (457)
                      .||+|+||.||+|.++..  ..+..||+|++....  .......+.+|++++++++|+||+++++++.. ...++||||+
T Consensus         2 ~ig~G~~g~v~~~~~~~~--~~~~~vavk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~   76 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMR--KKQIDVAIKVLKNEN--EKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMA   76 (257)
T ss_pred             ccCCCCcccEEEEEEecC--CCceeEEEEEccccc--ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeC
Confidence            489999999999987532  245679999986542  23345678889999999999999999998864 5789999999


Q ss_pred             CCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccc
Q 012762          169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV  248 (457)
Q Consensus       169 ~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~  248 (457)
                      ++++|.+++... ...+++..++.++.||+.||.|||++|++||||||+|||++.++.+||+|||++...........  
T Consensus        77 ~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~--  153 (257)
T cd05115          77 SGGPLNKFLSGK-KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK--  153 (257)
T ss_pred             CCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCcccee--
Confidence            999999888653 35789999999999999999999999999999999999999999999999999764321110000  


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCch
Q 012762          249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  328 (457)
                                                                                       ....-.++..|+|||
T Consensus       154 -----------------------------------------------------------------~~~~~~~~~~y~aPE  168 (257)
T cd05115         154 -----------------------------------------------------------------ARSAGKWPLKWYAPE  168 (257)
T ss_pred             -----------------------------------------------------------------ccCCCCCCcccCCHH
Confidence                                                                             000012467899999


Q ss_pred             hhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          329 IISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       329 ~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      ++.+..++.++|||||||++|||++ |..||...........+.. ....+....+++++.+++.+||..||++||+   
T Consensus       169 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~---  244 (257)
T cd05115         169 CINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQ-GKRLDCPAECPPEMYALMKDCWIYKWEDRPN---  244 (257)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHcCCChhhCcC---
Confidence            9998889999999999999999996 9999988776665544433 3334444567899999999999999999999   


Q ss_pred             ChHHHhc
Q 012762          408 GATAIKR  414 (457)
Q Consensus       408 ~~~~ll~  414 (457)
                       +.+|.+
T Consensus       245 -~~~i~~  250 (257)
T cd05115         245 -FAKVEE  250 (257)
T ss_pred             -HHHHHH
Confidence             666643

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=5.8e-41  Score=329.02  Aligned_cols=257  Identities=21%  Similarity=0.311  Sum_probs=199.2

Q ss_pred             CcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCCh
Q 012762           94 DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL  173 (457)
Q Consensus        94 ~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL  173 (457)
                      ++|.||+++.+    .+++.||+|++..... .......+..|+++++.++|+||+++++++...+..|++|||+.+++|
T Consensus        12 ~~~~v~~~~~~----~~~~~~avK~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216          12 DLMIVHLAKHK----PTNTLVAVKKINLDSC-SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             CCceEEEEEec----CCCCEEEEEEEecccc-chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            44556666554    3788999999976532 234556788899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCC
Q 012762          174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP  253 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~  253 (457)
                      ..++.......+++..++.++.||+.||.|||+++|+||||||+|||++.++.+||+|||.+...........       
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~-------  159 (314)
T cd08216          87 EDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQR-------  159 (314)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeecccccccc-------
Confidence            9998876556799999999999999999999999999999999999999999999999998754321110000       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC
Q 012762          254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE  333 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  333 (457)
                                                                              ..........++..|+|||++.+.
T Consensus       160 --------------------------------------------------------~~~~~~~~~~~~~~y~aPE~~~~~  183 (314)
T cd08216         160 --------------------------------------------------------VVHDFPKSSVKNLPWLSPEVLQQN  183 (314)
T ss_pred             --------------------------------------------------------ccccccccccccccccCHHHhcCC
Confidence                                                                    000001123578899999999764


Q ss_pred             --CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC--------------------------------CC
Q 012762          334 --GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--------------------------------PK  379 (457)
Q Consensus       334 --~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--------------------------------~~  379 (457)
                        .++.++|||||||++|||++|..||............+.+....                                ..
T Consensus       184 ~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (314)
T cd08216         184 LQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPY  263 (314)
T ss_pred             CCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcch
Confidence              58899999999999999999999998765444333222211100                                00


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ...++.++.+|+.+||..||++||+    +.++|+||||+.+.
T Consensus       264 ~~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~p~~~~~~  302 (314)
T cd08216         264 TRTFSEHFHQFVELCLQRDPESRPS----ASQLLNHSFFKQCK  302 (314)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcCcC----HHHHhcCchHhhhc
Confidence            0112356889999999999999999    99999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.6e-40  Score=325.44  Aligned_cols=256  Identities=23%  Similarity=0.306  Sum_probs=210.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ..|...+.||+|+||.||+|.++    .++..+|+|.+.............+..|+++++.++|+||+++++++......
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~----~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   90 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA   90 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEc----CCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCee
Confidence            35888899999999999999986    36788999998754333333445677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ++||||+. ++|..++... ...+++..+..++.|++.||.|||+.+++||||||+|||++.++.++|+|||++......
T Consensus        91 ~lv~e~~~-~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  168 (308)
T cd06634          91 WLVMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (308)
T ss_pred             EEEEEccC-CCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc
Confidence            99999995 6777666543 256899999999999999999999999999999999999999999999999986432210


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                                ....|+
T Consensus       169 --------------------------------------------------------------------------~~~~~~  174 (308)
T cd06634         169 --------------------------------------------------------------------------NXFVGT  174 (308)
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      023588


Q ss_pred             CCccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          322 HEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       322 ~~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ..|+|||++.+   ..++.++|||||||++|+|++|..||...........+............++..+.++|.+||..+
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  254 (308)
T cd06634         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKI  254 (308)
T ss_pred             ccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCC
Confidence            89999999853   457889999999999999999999998766554444444443333333457888999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |++||+    ++++++|+|+...
T Consensus       255 P~~Rp~----~~~ll~~~~~~~~  273 (308)
T cd06634         255 PQDRPT----SEVLLKHRFVLRE  273 (308)
T ss_pred             cccCCC----HHHHhhCcccccc
Confidence            999999    9999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.8e-40  Score=321.46  Aligned_cols=261  Identities=21%  Similarity=0.323  Sum_probs=209.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +..++|++.+.||+|+||.||+|.+... +...+..||+|++....  .......+.+|++++++++||||+++++++..
T Consensus         2 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~   79 (288)
T cd05050           2 YPRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDHPNIVKLLGVCAV   79 (288)
T ss_pred             CChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCc--CHHHHHHHHHHHHHHHhcCCCchheEEEEEcC
Confidence            3457899999999999999999987521 12356789999986542  22344668889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCC--------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQP--------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~--------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      +...|+||||+.+++|.+++....                    ...+++..+..++.||+.||.|||++|++||||||+
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~  159 (288)
T cd05050          80 GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATR  159 (288)
T ss_pred             CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHh
Confidence            999999999999999998887531                    124788889999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||++.++.++|+|||++..........                                                    
T Consensus       160 nil~~~~~~~~l~dfg~~~~~~~~~~~~----------------------------------------------------  187 (288)
T cd05050         160 NCLVGENMVVKIADFGLSRNIYSADYYK----------------------------------------------------  187 (288)
T ss_pred             heEecCCCceEECccccceecccCcccc----------------------------------------------------
Confidence            9999999999999999875332110000                                                    


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccC
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALE  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  376 (457)
                                      ......++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+..... 
T Consensus       188 ----------------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~-  250 (288)
T cd05050         188 ----------------ASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNV-  250 (288)
T ss_pred             ----------------ccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCC-
Confidence                            0001124667999999998889999999999999999997 8899988776666665554432 


Q ss_pred             CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       377 ~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .+....++.++.+|+.+||+.||++||+    +.||++
T Consensus       251 ~~~~~~~~~~l~~li~~~l~~~p~~Rpt----~~el~~  284 (288)
T cd05050         251 LSCPDNCPLELYNLMRLCWSKLPSDRPS----FASINR  284 (288)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCcccCCC----HHHHHH
Confidence            2333457889999999999999999999    777764

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.3e-40  Score=318.24  Aligned_cols=259  Identities=20%  Similarity=0.265  Sum_probs=209.0

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.+.||+|+||+||+|.++.........||+|++.....  ......+.+|++++++++|+||+++++++.. 
T Consensus         4 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-   80 (279)
T cd05057           4 LKETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS--PKANKEILDEAYVMASVDHPHVVRLLGICLS-   80 (279)
T ss_pred             cCHHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-
Confidence            4457899999999999999999998753333345799998865432  3345667889999999999999999999987 


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...++||||+.+++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~  159 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLL  159 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccc
Confidence            78899999999999999887643 45899999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ........                                                                    ....
T Consensus       160 ~~~~~~~~--------------------------------------------------------------------~~~~  171 (279)
T cd05057         160 DVDEKEYH--------------------------------------------------------------------AEGG  171 (279)
T ss_pred             cCccccee--------------------------------------------------------------------cCCC
Confidence            31111000                                                                    0001


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||.+....++.++|+|||||++|||++ |..||.+....+....+. .....+.....+.++.+++.+||..
T Consensus       172 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~  250 (279)
T cd05057         172 KVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLE-KGERLPQPPICTIDVYMVLVKCWMI  250 (279)
T ss_pred             cccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHh-CCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            14568999999988889999999999999999998 999998876655544444 3334444455788999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||+    +.++++
T Consensus       251 ~p~~Rp~----~~~l~~  263 (279)
T cd05057         251 DAESRPT----FKELIN  263 (279)
T ss_pred             ChhhCCC----HHHHHH
Confidence            9999999    666654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.7e-40  Score=328.12  Aligned_cols=254  Identities=25%  Similarity=0.372  Sum_probs=204.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-C
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-P  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-~  158 (457)
                      ..++|++++.||.|+||.||+|.++    .+++.||+|++.+.. ........+..|+++++.++||||+++++++.. .
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   82 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQ----LTGQNVAIKKIMKPF-STPVLAKRTYRELKLLKHLRHENIISLSDIFISPL   82 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEEC----CCCCEEEEEEecccc-cccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC
Confidence            3467999999999999999999876    478899999886532 222344566779999999999999999999865 5


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...|+||||+ +++|..++..   ..+++..+..++.||+.||.|||+.||+||||+|.|||++.++.++|+|||++...
T Consensus        83 ~~~~lv~e~~-~~~L~~~~~~---~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~  158 (328)
T cd07856          83 EDIYFVTELL-GTDLHRLLTS---RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQ  158 (328)
T ss_pred             CcEEEEeehh-ccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCcccccccc
Confidence            6789999999 7789887764   46888999999999999999999999999999999999999999999999987532


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ...                                                                         ....
T Consensus       159 ~~~-------------------------------------------------------------------------~~~~  165 (328)
T cd07856         159 DPQ-------------------------------------------------------------------------MTGY  165 (328)
T ss_pred             CCC-------------------------------------------------------------------------cCCC
Confidence            210                                                                         0123


Q ss_pred             cCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc------------------------
Q 012762          319 VGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR------------------------  373 (457)
Q Consensus       319 ~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~------------------------  373 (457)
                      .++..|+|||++.+ ..++.++|||||||++|+|++|+.||...........+.+.                        
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (328)
T cd07856         166 VSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSL  245 (328)
T ss_pred             cccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhc
Confidence            57889999999866 56899999999999999999999999876543222111110                        


Q ss_pred             --ccCCCC---CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          374 --ALEFPK---EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       374 --~~~~~~---~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                        ....+.   .+.++..+.++|.+||+.||++||+    +++++.||||.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~ell~~~~~~  292 (328)
T cd07856         246 PKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRIS----AAEALAHPYLA  292 (328)
T ss_pred             cccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCCccc
Confidence              000010   1246788999999999999999999    99999999996

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-42  Score=306.80  Aligned_cols=266  Identities=21%  Similarity=0.273  Sum_probs=211.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .++-.+|++.+.||+|||+-||+++.-    .++..||+|.+.-..   ....+..++|++..++++||||++++++...
T Consensus        17 ~In~~Ryri~~~LgeGGfsfv~LV~~~----s~~~~YAlKkI~c~~---~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~   89 (302)
T KOG2345|consen   17 IINNKRYRIQRLLGEGGFSFVDLVKGL----STGHLYALKKILCHS---QEDIEEALREIDNHRKFNSPNVLRLVDHQLR   89 (302)
T ss_pred             EEcCceEEEeeeecCCCceeeeeeccc----Ccccchhhheeeccc---hHHHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            456679999999999999999999855    378899999986543   3566778889999999999999999987644


Q ss_pred             CC-----cEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCCCEE
Q 012762          158 PR-----WSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       158 ~~-----~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~~vk  228 (457)
                      +.     ..||+++|+..|+|.+.+++..  +..+++.++..|+.+|++||++||+..  +.||||||.|||++.++.++
T Consensus        90 ~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~v  169 (302)
T KOG2345|consen   90 EEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPV  169 (302)
T ss_pred             hhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceE
Confidence            33     4899999999999988877643  346999999999999999999999998  99999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |.|||.+....-.....                                               .+...+          
T Consensus       170 l~D~GS~~~a~i~i~~~-----------------------------------------------~~a~~l----------  192 (302)
T KOG2345|consen  170 LMDLGSATQAPIQIEGS-----------------------------------------------RQALRL----------  192 (302)
T ss_pred             EEeccCccccceEeech-----------------------------------------------HHHHHH----------
Confidence            99999875432111000                                               000000          


Q ss_pred             cCCccccccccCCCCccCchhhcCCC---CCccchhhhhhHHHHHHhcCCCCCCCCCh--HHHHHHHHhcccCCCCCCCC
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEG---HGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARALEFPKEPSV  383 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~---~~~~sDiwSlG~il~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~  383 (457)
                          +....-..|..|+|||.+.-..   .+.++|||||||+||.|+.|..||...-.  ......+....+.+|....+
T Consensus       193 ----Qe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~y  268 (302)
T KOG2345|consen  193 ----QEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRY  268 (302)
T ss_pred             ----HHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCc
Confidence                0001113588999999997543   58899999999999999999999964321  12233445567888888889


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++.+.++|..||+.||.+||+    +.+++.+
T Consensus       269 se~l~~lik~mlqvdP~qRP~----i~~ll~~  296 (302)
T KOG2345|consen  269 SEALHQLIKSMLQVDPNQRPT----IPELLSK  296 (302)
T ss_pred             cHHHHHHHHHHhcCCcccCCC----HHHHHHH
Confidence            999999999999999999999    8888764

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2e-40  Score=314.72  Aligned_cols=254  Identities=24%  Similarity=0.372  Sum_probs=214.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +|++.++||.|+||.||++.++    .++..||+|.+...... ......+..|++++++++|+||+++++++......|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRL----SDNQFYALKEVDLGSMS-QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLC   75 (256)
T ss_pred             CceEeeeecCCCceeEEEEEEC----CCCCEEEEEEEehhhcc-HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEE
Confidence            5899999999999999999876    47889999999765433 234556677999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +||||+++++|..++...  ....+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++.....
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~  155 (256)
T cd08530          76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKK  155 (256)
T ss_pred             EEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhcc
Confidence            999999999998887652  235689999999999999999999999999999999999999999999999998754432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                        ....|
T Consensus       156 ~~~------------------------------------------------------------------------~~~~~  163 (256)
T cd08530         156 NMA------------------------------------------------------------------------KTQIG  163 (256)
T ss_pred             CCc------------------------------------------------------------------------ccccC
Confidence            100                                                                        01247


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +..|+|||.+.+..++.++|+||||+++|+|++|+.||...+.......+....+. +....++.++++++.+||..+|+
T Consensus       164 ~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~  242 (256)
T cd08530         164 TPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYP-PIPPIYSQDLQNFIRSMLQVKPK  242 (256)
T ss_pred             CccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCC-CCchhhCHHHHHHHHHHcCCCcc
Confidence            88999999999988999999999999999999999999887766555555444332 22235788999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCC
Q 012762          401 RRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f  418 (457)
                      +||+    +.++++||++
T Consensus       243 ~Rp~----~~~~l~~p~~  256 (256)
T cd08530         243 LRPN----CDKILASPAV  256 (256)
T ss_pred             cCCC----HHHHhcCCCC
Confidence            9999    9999999984

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=2.6e-40  Score=327.32  Aligned_cols=261  Identities=24%  Similarity=0.347  Sum_probs=202.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc----
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC----  157 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~----  157 (457)
                      +|++.+.||+|+||.||+|.+...  ..+..||+|++.... ........+..|+++++++ +|+||+++++++..    
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~--~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~   77 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAET--SEEETVAIKKITNVF-SKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGN   77 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCC--CcCceEEEEEecccc-ccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecccc
Confidence            488999999999999999998631  127889999986431 2222345677799999999 59999999987532    


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ...+|++|||+ +++|..++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.++|+|||+++.
T Consensus        78 ~~~~~~~~e~~-~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~  154 (332)
T cd07857          78 FNELYLYEELM-EADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARG  154 (332)
T ss_pred             CCcEEEEEecc-cCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCcee
Confidence            24578999999 57898887654  6799999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                  ......
T Consensus       155 ~~~~~~~~------------------------------------------------------------------~~~~~~  168 (332)
T cd07857         155 FSENPGEN------------------------------------------------------------------AGFMTE  168 (332)
T ss_pred             cccccccc------------------------------------------------------------------cccccC
Confidence            43211000                                                                  001113


Q ss_pred             ccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc---------------------
Q 012762          318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL---------------------  375 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~---------------------  375 (457)
                      ..||..|+|||++.+ ..++.++|||||||++|+|++|..||........+..++....                     
T Consensus       169 ~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
T cd07857         169 YVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRS  248 (332)
T ss_pred             cccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHh
Confidence            468999999998876 4689999999999999999999999987654333332222100                     


Q ss_pred             -------CCC-CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          376 -------EFP-KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       376 -------~~~-~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                             .+. ..+..+..+.+++.+||+.||++||+    +.++++||||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t----~~~ll~~~~~~  296 (332)
T cd07857         249 LPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRIS----VEEALEHPYLA  296 (332)
T ss_pred             ccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCC----HHHHhcChhhh
Confidence                   000 11235678999999999999999999    99999999997

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2.5e-40  Score=314.57  Aligned_cols=252  Identities=22%  Similarity=0.326  Sum_probs=207.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +..+|++.+.||+|+||.||+|.+.     .+..+|+|++.....    ....+..|+++++.++|+||+++++++....
T Consensus         2 ~~~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~~~k~~~~~~~----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   72 (256)
T cd05112           2 HPSELTLVQEIGSGQFGLVWLGYWL-----EKRKVAIKTIREGAM----SEEDFIEEAQVMMKLSHPKLVQLYGVCTERS   72 (256)
T ss_pred             ChhHeEEEeeecCcccceEEEEEEe-----CCCeEEEEECCCCCC----CHHHHHHHHHHHHhCCCCCeeeEEEEEccCC
Confidence            4568999999999999999999875     466899999865432    2345778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+.+++|.+++.... ..+++..++.++.|++.||.|||+.+++|+||||+||+++.++.++|+|||++....
T Consensus        73 ~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~  151 (256)
T cd05112          73 PICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVL  151 (256)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecc
Confidence            9999999999999998887642 468899999999999999999999999999999999999999999999999875432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                     ......
T Consensus       152 ~~~~~---------------------------------------------------------------------~~~~~~  162 (256)
T cd05112         152 DDQYT---------------------------------------------------------------------SSTGTK  162 (256)
T ss_pred             cCccc---------------------------------------------------------------------ccCCCc
Confidence            11000                                                                     000113


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ++..|+|||++.+..++.++|||||||++|||++ |..||...........+... .........+..+.+|+.+||..+
T Consensus       163 ~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~  241 (256)
T cd05112         163 FPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAG-FRLYKPRLASQSVYELMQHCWKER  241 (256)
T ss_pred             cchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHcccC
Confidence            5678999999998889999999999999999998 99999877766655554433 232233346889999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++||+    +.+++++
T Consensus       242 p~~Rp~----~~~~l~~  254 (256)
T cd05112         242 PEDRPS----FSLLLHQ  254 (256)
T ss_pred             hhhCCC----HHHHHHh
Confidence            999999    8888764

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.6e-41  Score=332.16  Aligned_cols=259  Identities=26%  Similarity=0.357  Sum_probs=211.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC---
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR---  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~---  159 (457)
                      +|++.+.||.|+||.||+|.+.    .++..||+|++.+.. ........+..|+++++.++|+||+++++++....   
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~----~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   75 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDK----RTGRKVAIKKISNVF-DDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPED   75 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeC----CCCcEEEEEeecccc-ccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCccc
Confidence            5899999999999999999876    368899999987542 12334566788999999999999999999987765   


Q ss_pred             --cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                        .+|+||||+. ++|..++...  ..+++..++.++.||+.||.|||+.||+|+||||+|||++.++.++|+|||++..
T Consensus        76 ~~~~~lv~e~~~-~~l~~~l~~~--~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          76 FNDVYIVTELME-TDLHKVIKSP--QPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             ccceEEEecchh-hhHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence              7899999995 6888887664  4799999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                   ......
T Consensus       153 ~~~~~~~-------------------------------------------------------------------~~~~~~  165 (330)
T cd07834         153 VDPDEDE-------------------------------------------------------------------KGFLTE  165 (330)
T ss_pred             ecccccc-------------------------------------------------------------------cccccc
Confidence            4321100                                                                   000112


Q ss_pred             ccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-----------------
Q 012762          318 FVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-----------------  379 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-----------------  379 (457)
                      ..++..|+|||++.+. .++.++|||||||++|+|++|..||.+....+.+..++......+.                 
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (330)
T cd07834         166 YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKS  245 (330)
T ss_pred             cccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhh
Confidence            3588899999999888 7899999999999999999999999887765555544432211110                 


Q ss_pred             ------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          380 ------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       380 ------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                  .+.++.++.++|.+||+.||++||+    ++++++||||+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt----~~~ll~~~~~~~  294 (330)
T cd07834         246 LPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRIT----ADEALAHPYLAQ  294 (330)
T ss_pred             cccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCC----HHHHHhCccHHh
Confidence                        1235778999999999999999999    999999999986

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=1.8e-40  Score=324.55  Aligned_cols=268  Identities=24%  Similarity=0.334  Sum_probs=205.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++.++||+|+||.||+|.++    .+++.||+|++....... .....+.+|+++++.++|+||+++++++...  
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   81 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQI----KTGRVVALKKILMHNEKD-GFPITALREIKILKKLKHPNVVPLIDMAVERPD   81 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEEC----CCCcEEEEEEEEeccCCC-CcchhHHHHHHHHHhcCCCCccchhhheecccc
Confidence            679999999999999999999976    378899999986543221 2234556799999999999999999987543  


Q ss_pred             ------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          159 ------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       159 ------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                            ..+|+||||+. ++|...+... ...+++..++.++.||++||.|||++||+|+||||+|||++.++.++|+||
T Consensus        82 ~~~~~~~~~~lv~~~~~-~~l~~~~~~~-~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~df  159 (311)
T cd07866          82 KSKRKRGSVYMVTPYMD-HDLSGLLENP-SVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADF  159 (311)
T ss_pred             cccccCceEEEEEecCC-cCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcC
Confidence                  34699999994 5676665542 357999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++............                                                           ......
T Consensus       160 g~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~~  180 (311)
T cd07866         160 GLARPYDGPPPNPKG-----------------------------------------------------------GGGGGT  180 (311)
T ss_pred             ccchhccCCCccccc-----------------------------------------------------------CCcccc
Confidence            998654321110000                                                           000001


Q ss_pred             cccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC-------------
Q 012762          313 VRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP-------------  378 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-------------  378 (457)
                      .......|++.|+|||++.+. .++.++|||||||++|||++|++||.+.........+.......+             
T Consensus       181 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
T cd07866         181 RKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGC  260 (311)
T ss_pred             cccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccc
Confidence            111234689999999998764 478999999999999999999999988766554444332211000             


Q ss_pred             ---------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ---------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ---------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                                     ....+...+.++|.+||..||++||+    +.+++.||||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t----~~ell~~~~f  311 (311)
T cd07866         261 EGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLT----ASDALEHPYF  311 (311)
T ss_pred             cccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcC----HHHHhcCCCC
Confidence                           00123467889999999999999999    9999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=1.9e-40  Score=322.90  Aligned_cols=263  Identities=25%  Similarity=0.393  Sum_probs=209.7

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      ..+.+..++|.+.+.||+|+||.||+|.+.    .++..||||++++...  ......+..|++++.++ +|+||+++++
T Consensus         8 ~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~----~~~~~~avK~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~i~~~~~   81 (296)
T cd06618           8 QKYPADLNDLENLGEIGSGTCGQVYKMRFK----KTGHVMAVKQMRRTGN--KEENKRILMDLDVVLKSHDCPYIVKCYG   81 (296)
T ss_pred             eeccCCcchheeeeEeeccCCeEEEEEEEC----CCCeEEEEEEEeccCC--hHHHHHHHHHHHHHHhccCCCchHhhhe
Confidence            445677889999999999999999999986    3688999999975432  12334455577766666 5999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEecc
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                      ++......|+||||+ +++|..++.... ..+++..+..++.||+.||.|||+ .||+||||+|+||+++.++.+||+||
T Consensus        82 ~~~~~~~~~~v~e~~-~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~df  159 (296)
T cd06618          82 YFITDSDVFICMELM-STCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDF  159 (296)
T ss_pred             eeecCCeEEEEeecc-CcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECcc
Confidence            999999999999999 567877766532 478999999999999999999997 59999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++........                                                                     
T Consensus       160 g~~~~~~~~~~---------------------------------------------------------------------  170 (296)
T cd06618         160 GISGRLVDSKA---------------------------------------------------------------------  170 (296)
T ss_pred             ccchhccCCCc---------------------------------------------------------------------
Confidence            98754321100                                                                     


Q ss_pred             cccccccCCCCccCchhhcCCC----CCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhccc-CCCCCCCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARAL-EFPKEPSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~----~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~  386 (457)
                        .....|+..|+|||++.+..    ++.++||||||+++|+|++|+.||..... .+.+..++.... ..+....++.+
T Consensus       171 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (296)
T cd06618         171 --KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPD  248 (296)
T ss_pred             --ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence              00124788999999997654    78899999999999999999999976432 334444444332 22222347889


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.+|+.+||..||++||+    ++++++|+||..
T Consensus       249 l~~li~~~l~~~p~~Rp~----~~~il~~~~~~~  278 (296)
T cd06618         249 FCSFVDLCLTKDHRKRPK----YRELLQHPFIRR  278 (296)
T ss_pred             HHHHHHHHccCChhhCCC----HHHHhcChhhhc
Confidence            999999999999999999    999999999984

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.2e-40  Score=331.22  Aligned_cols=254  Identities=27%  Similarity=0.393  Sum_probs=207.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|.+.+.||+|+||+||+|.+..    ++..||+|++..... .......+.+|+.+++.++|+||+++++++...+.
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~----~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   88 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTK----TGRKVAIKKLSRPFQ-SAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASS   88 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECC----CCcEEEEEecccccc-hhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccc
Confidence            4579999999999999999999863    678999999865321 22234556779999999999999999998866554


Q ss_pred             ------EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          161 ------SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       161 ------~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                            .|+|+||+ +++|.+++..   ..+++..+..++.||+.||.|||+.||+||||||+||+++.++.++|+|||+
T Consensus        89 ~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~  164 (343)
T cd07851          89 LEDFQDVYLVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGL  164 (343)
T ss_pred             ccccccEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccc
Confidence                  89999999 7899988875   5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       165 ~~~~~~~-------------------------------------------------------------------------  171 (343)
T cd07851         165 ARHTDDE-------------------------------------------------------------------------  171 (343)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            7543211                                                                         


Q ss_pred             cccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          315 SMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      .....++..|+|||.+.+. .++.++|||||||++|+|++|+.||.+......+..++......+               
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  251 (343)
T cd07851         172 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNY  251 (343)
T ss_pred             ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHH
Confidence            0122478899999998653 578999999999999999999999987766555444433211000               


Q ss_pred             --------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 --------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 --------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                    ....++..+.++|.+||..||++||+    +.+|++||||+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt----~~ell~h~~~~~  303 (343)
T cd07851         252 IQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRIT----AAEALAHPYLAE  303 (343)
T ss_pred             HHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCC----HHHHhcCCCccc
Confidence                          01235788999999999999999999    999999999994

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=2.2e-40  Score=322.82  Aligned_cols=260  Identities=25%  Similarity=0.336  Sum_probs=206.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|++.+.||+|+||+||+|.++    .+++.||+|+++.... .......+..|+++++.++||||+++++++...
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~----~~~~~v~iK~~~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~   78 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDK----DTGELVALKKVRLDNE-KEGFPITAIREIKILRQLNHRNIVNLKEIVTDK   78 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEEC----CCCcEEEEEEEeeccc-ccCchHHHHHHHHHHHhCCCCCeeeeeheecCc
Confidence            34578999999999999999999986    3688999999975432 222334566799999999999999999998765


Q ss_pred             C----------cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          159 R----------WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       159 ~----------~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      .          .+|+||||+++ +|..++... ...+++..++.++.||+.||.|||+.||+|+||||+||+++.++.+|
T Consensus        79 ~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~k  156 (302)
T cd07864          79 QDALDFKKDKGAFYLVFEYMDH-DLMGLLESG-LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIK  156 (302)
T ss_pred             chhhhccccCCcEEEEEcccCc-cHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEE
Confidence            4          78999999965 676666553 35689999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||++.........                                                                
T Consensus       157 l~dfg~~~~~~~~~~~----------------------------------------------------------------  172 (302)
T cd07864         157 LADFGLARLYNSEESR----------------------------------------------------------------  172 (302)
T ss_pred             eCcccccccccCCccc----------------------------------------------------------------
Confidence            9999987654321100                                                                


Q ss_pred             cCCccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC----------
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF----------  377 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~----------  377 (457)
                           ......++..|+|||++.+. .++.++|||||||++|||++|++||........+..+.......          
T Consensus       173 -----~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (302)
T cd07864         173 -----PYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIK  247 (302)
T ss_pred             -----ccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccc
Confidence                 00012367789999998754 47889999999999999999999998766555444433321100          


Q ss_pred             ------------------CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          378 ------------------PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       378 ------------------~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                                        .....++..+.++|.+||..||++||+    +.+++.||||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~----~~~il~~~~~  302 (302)
T cd07864         248 LPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCT----AEEALNSPWL  302 (302)
T ss_pred             cccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCC----HHHHhcCCCC
Confidence                              011246788999999999999999999    9999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-41  Score=329.45  Aligned_cols=260  Identities=20%  Similarity=0.301  Sum_probs=216.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..++..+...+.++||+|.||.|.+|+..     .+..||+|.++...  .......|..|+++|.+|+||||++++++|
T Consensus       532 l~EfPRs~L~~~ekiGeGqFGEVhLCeve-----g~lkVAVK~Lr~~a--~~~~r~~F~kEIkiLsqLkhPNIveLvGVC  604 (807)
T KOG1094|consen  532 LVEFPRSRLRFKEKIGEGQFGEVHLCEVE-----GPLKVAVKILRPDA--TKNARNDFLKEIKILSRLKHPNIVELLGVC  604 (807)
T ss_pred             hhhcchhheehhhhhcCcccceeEEEEec-----CceEEEEeecCccc--chhHHHHHHHHHHHHhccCCCCeeEEEeee
Confidence            34566678899999999999999999964     46899999997653  334567899999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..++.+||||||+++|+|..++..+....+.......++.||+.||+||.+.++|||||.+.|+|++.++++||+|||++
T Consensus       605 ~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgms  684 (807)
T KOG1094|consen  605 VQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMS  684 (807)
T ss_pred             ecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccc
Confidence            99999999999999999999998874333455566779999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.+-.......                                                                    -
T Consensus       685 R~lysg~yy~v--------------------------------------------------------------------q  696 (807)
T KOG1094|consen  685 RNLYSGDYYRV--------------------------------------------------------------------Q  696 (807)
T ss_pred             cccccCCceee--------------------------------------------------------------------e
Confidence            75432221111                                                                    0


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHh--cCCCCCCCCChHHHHHHHHhc------ccCCCCCCCCChHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF--YGTTPFKGIDHELTLANVVAR------ALEFPKEPSVPGPA  387 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ell--tG~~Pf~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  387 (457)
                      ...+-...|||+|.+.-..++.++|+|+||+++||++  +.+.||....+++..++.-.-      ..-++.+..+|..+
T Consensus       697 gr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~l  776 (807)
T KOG1094|consen  697 GRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGL  776 (807)
T ss_pred             cceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHH
Confidence            1234578999999999999999999999999999988  588999998888777664432      12233456789999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .++|.+||..|-++||+    +++|-.
T Consensus       777 yelml~Cw~~es~~RPs----Fe~lh~  799 (807)
T KOG1094|consen  777 YELMLRCWRRESEQRPS----FEQLHL  799 (807)
T ss_pred             HHHHHHHhchhhhcCCC----HHHHHH
Confidence            99999999999999999    888844

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=1.7e-40  Score=316.67  Aligned_cols=256  Identities=26%  Similarity=0.438  Sum_probs=206.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh--hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV--SRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +|.+.++||+|+||+||++.+..    .+..+++|+++.....  .......+..|++++++++||||+++++++.....
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   76 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKK----AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDA   76 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecC----CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCc
Confidence            58899999999999999998763    3445666665432221  12234456678999999999999999999998899


Q ss_pred             EEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      .|+||||+.+++|..++..  .....+++..++.++.|++.||.|||+.|++|+||||+||+++. +.++|+|||++...
T Consensus        77 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~  155 (260)
T cd08222          77 FCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLL  155 (260)
T ss_pred             eEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeec
Confidence            9999999999999888764  23457899999999999999999999999999999999999964 67999999987543


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                      .....
T Consensus       156 ~~~~~----------------------------------------------------------------------~~~~~  165 (260)
T cd08222         156 MGSCD----------------------------------------------------------------------LATTF  165 (260)
T ss_pred             CCCcc----------------------------------------------------------------------cccCC
Confidence            21100                                                                      00123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      .|+..|+|||.+.+..++.++|+||||+++|+|++|..||...........+...... .....++.++.++|.+||..|
T Consensus       166 ~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~  244 (260)
T cd08222         166 TGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTP-SLPETYSRQLNSIMQSMLNKD  244 (260)
T ss_pred             CCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCC-CCcchhcHHHHHHHHHHhcCC
Confidence            4788999999998888999999999999999999999999876665555555443222 123357789999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f  418 (457)
                      |++||+    +.++++||||
T Consensus       245 p~~Rp~----~~~il~~~~~  260 (260)
T cd08222         245 PSLRPS----AAEILRNPFI  260 (260)
T ss_pred             hhhCcC----HHHHhhCCCC
Confidence            999999    9999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=6.9e-40  Score=310.41  Aligned_cols=245  Identities=21%  Similarity=0.353  Sum_probs=200.0

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||.||+|...     .+..||+|++....  .......+..|+++++.++|+||+++++++...+..++||||
T Consensus         1 ~~ig~g~~g~vy~~~~~-----~~~~~a~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   73 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-----DKTPVAVKTCKEDL--PQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMEL   73 (250)
T ss_pred             CccCCCCCceEEEEEec-----CCcEEEEEecCCcC--CHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEEC
Confidence            36899999999999853     56789999986542  223344677899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +++++|..++.... ..+++..+..++.|++.+|.|||+.|++|+||||+||+++.++.+||+|||++..........  
T Consensus        74 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~--  150 (250)
T cd05085          74 VPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS--  150 (250)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceecccccccc--
Confidence            99999998886542 468899999999999999999999999999999999999999999999999875322110000  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                         .....++..|+||
T Consensus       151 -------------------------------------------------------------------~~~~~~~~~y~aP  163 (250)
T cd05085         151 -------------------------------------------------------------------SGLKQIPIKWTAP  163 (250)
T ss_pred             -------------------------------------------------------------------CCCCCCcccccCH
Confidence                                                                               0011246679999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      |++.+..++.++||||||+++|+|++ |..||.+.........+. ..........++.++.+++.+||..||++||+  
T Consensus       164 E~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~--  240 (250)
T cd05085         164 EALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVE-KGYRMSCPQKCPDDVYKVMQRCWDYKPENRPK--  240 (250)
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHcccCcccCCC--
Confidence            99998889999999999999999998 999998876655554443 33343444568899999999999999999999  


Q ss_pred             cChHHHhc
Q 012762          407 MGATAIKR  414 (457)
Q Consensus       407 ~~~~~ll~  414 (457)
                        +.++++
T Consensus       241 --~~~l~~  246 (250)
T cd05085         241 --FSELQK  246 (250)
T ss_pred             --HHHHHH
Confidence              888765

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=4.8e-40  Score=317.09  Aligned_cols=260  Identities=24%  Similarity=0.358  Sum_probs=209.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--C
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--P  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~  158 (457)
                      .++|++.+.||+|+||.||+|.+...+..++..||+|++......  .....+..|+++++.++|+||+++++++..  .
T Consensus         3 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~   80 (284)
T cd05038           3 KRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE--QHRSDFEREIEILRTLDHENIVKYKGVCEKPGG   80 (284)
T ss_pred             hhhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch--HHHHHHHHHHHHHHhCCCCChheEEeeeecCCC
Confidence            457899999999999999999876544456889999999765332  345678889999999999999999999877  5


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ...++||||+++++|.+++.... ..+++..+..++.||+.||.|||++|++|+||||+||+++.++.++|+|||++...
T Consensus        81 ~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  159 (284)
T cd05038          81 RSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVL  159 (284)
T ss_pred             CceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccc
Confidence            57899999999999999987653 35899999999999999999999999999999999999999999999999998655


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .........                                                                   ....
T Consensus       160 ~~~~~~~~~-------------------------------------------------------------------~~~~  172 (284)
T cd05038         160 PEDKDYYYV-------------------------------------------------------------------KEPG  172 (284)
T ss_pred             ccCCcceec-------------------------------------------------------------------cCCC
Confidence            321110000                                                                   0011


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--------------HHHHHHHhcccCCCCCCCCC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--------------LTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~~~  384 (457)
                      .++..|++||.+.+..++.++|||||||++|||++|..||......              ......+......+....++
T Consensus       173 ~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd05038         173 ESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCP  252 (284)
T ss_pred             CCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccCC
Confidence            2566799999998888999999999999999999999998754321              12233334444555555678


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..+.+++.+||..||++||+    +.+|++
T Consensus       253 ~~~~~li~~cl~~~p~~Rpt----~~ei~~  278 (284)
T cd05038         253 DEVYDLMKLCWEAEPQDRPS----FADLIL  278 (284)
T ss_pred             HHHHHHHHHHhccChhhCCC----HHHHHH
Confidence            89999999999999999999    777765

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=6.7e-40  Score=314.23  Aligned_cols=250  Identities=21%  Similarity=0.297  Sum_probs=193.9

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      ++||+|+||+||+|.....  .....+|+|.+....  .......+.+|+++++.++|+||+++++++......|+||||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~--~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~   76 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRG--MSKARVVVKELRASA--TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEF   76 (269)
T ss_pred             CcCCccCCceEEEEEEecC--CCCeEEEEeecCccC--ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEe
Confidence            3689999999999976432  245678888875432  223345677899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCC---CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcc
Q 012762          168 CPGGDLHVLRQRQPD---KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~---~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~  244 (457)
                      +.+|+|.+++.....   ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.........
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~  156 (269)
T cd05042          77 CPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYY  156 (269)
T ss_pred             CCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchhe
Confidence            999999998876432   33567888999999999999999999999999999999999999999999987533211000


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                      .                                                                    ......++..|
T Consensus       157 ~--------------------------------------------------------------------~~~~~~~~~~y  168 (269)
T cd05042         157 I--------------------------------------------------------------------TKDCHAVPLRW  168 (269)
T ss_pred             e--------------------------------------------------------------------ccCCCCCcccc
Confidence            0                                                                    00012367789


Q ss_pred             cCchhhcC-------CCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc-CCCC---CCCCChHHHHHHH
Q 012762          325 LAPEIISG-------EGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL-EFPK---EPSVPGPAKDLIA  392 (457)
Q Consensus       325 ~aPE~l~~-------~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~ll~  392 (457)
                      +|||++..       ..++.++|||||||++|||++ |..||......+.+...+.... .++.   ...++..+.+++.
T Consensus       169 ~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (269)
T cd05042         169 LAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQ  248 (269)
T ss_pred             cCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHH
Confidence            99999753       346789999999999999998 8899988776666555544322 2222   2356788899999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .|| .||++||+    +++|++
T Consensus       249 ~~~-~dp~~Rpt----~~~v~~  265 (269)
T cd05042         249 FCW-LDPETRPT----AEEVHE  265 (269)
T ss_pred             HHh-cCcccccC----HHHHHH
Confidence            998 59999999    888765

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=8.9e-40  Score=313.54  Aligned_cols=258  Identities=23%  Similarity=0.368  Sum_probs=208.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +...+|.+.+.||+|+||.||+|.+.... .....||+|......  .....+.+..|+++++.++|+||+++++++.. 
T Consensus         3 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~-~~~~~v~ik~~~~~~--~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-   78 (270)
T cd05056           3 IQREDITLGRCIGEGQFGDVYQGVYMSPE-NEKIAVAVKTCKNCT--SPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-   78 (270)
T ss_pred             echhhceeeeeeCCccceeEEEEEEecCC-CCCcceEEEecCCcC--CHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-
Confidence            34567999999999999999999876321 234578999886542  12345677889999999999999999999875 


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||+++++|.+++.... ..+++..++.++.||+.||.|||+.|++|+||||+|||++.++.++|+|||+++..
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          79 NPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             CCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeec
Confidence            45789999999999999987642 45899999999999999999999999999999999999999999999999987644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .......                                                                     ....
T Consensus       158 ~~~~~~~---------------------------------------------------------------------~~~~  168 (270)
T cd05056         158 EDESYYK---------------------------------------------------------------------ASKG  168 (270)
T ss_pred             cccccee---------------------------------------------------------------------cCCC
Confidence            3211000                                                                     0011


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||.+.+..++.++|||||||++|||++ |..||.+....+....+.. ....+....++..+.+++.+||..
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~  247 (270)
T cd05056         169 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIEN-GERLPMPPNCPPTLYSLMTKCWAY  247 (270)
T ss_pred             CccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHc-CCcCCCCCCCCHHHHHHHHHHcCC
Confidence            24568999999988889999999999999999986 9999988776665555443 334444556889999999999999


Q ss_pred             CCCCCCCCCcChHHHhcC
Q 012762          398 DPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~h  415 (457)
                      +|++||+    +.+++..
T Consensus       248 ~P~~Rpt----~~~~~~~  261 (270)
T cd05056         248 DPSKRPR----FTELKAQ  261 (270)
T ss_pred             ChhhCcC----HHHHHHH
Confidence            9999999    8887653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.8e-40  Score=329.17  Aligned_cols=263  Identities=25%  Similarity=0.381  Sum_probs=206.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP-  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~-  158 (457)
                      .++|.+.+.||+|+||.||+|.+.    .++..||+|++.+.. ........+..|+++++++ +|+||+++++++... 
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~----~~~~~~~vK~~~~~~-~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~   80 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDR----RTKEVVALKKIFDAF-RNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEN   80 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEc----CCCeEEEEEeecccc-CcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCC
Confidence            467999999999999999999876    367899999885432 1222334566799999999 999999999998654 


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       ...|+||||+. ++|..++..   ..+.+..++.++.||+.||.|||+.||+||||||+||+++.++.+||+|||++..
T Consensus        81 ~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~  156 (337)
T cd07852          81 DKDIYLVFEYME-TDLHAVIRA---NILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARS  156 (337)
T ss_pred             CceEEEEecccc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhc
Confidence             36899999995 699887765   3688899999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                 .......
T Consensus       157 ~~~~~~~~-----------------------------------------------------------------~~~~~~~  171 (337)
T cd07852         157 LSELEENP-----------------------------------------------------------------ENPVLTD  171 (337)
T ss_pred             cccccccc-----------------------------------------------------------------cCcchhc
Confidence            43211000                                                                 0001113


Q ss_pred             ccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-------------------
Q 012762          318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-------------------  377 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-------------------  377 (457)
                      +.|+..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.........+.......                   
T Consensus       172 ~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T cd07852         172 YVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDS  251 (337)
T ss_pred             ccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhh
Confidence            468999999998865 457889999999999999999999998766544433332221100                   


Q ss_pred             ----------CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          378 ----------PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       378 ----------~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                ...+.++.++.++|.+||+.||++||+    +.++++||||+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps----~~~il~~~~~~~~  301 (337)
T cd07852         252 LPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLT----AEEALEHPYVAQF  301 (337)
T ss_pred             cccccccchhhhccCCCHHHHHHHHHhccCCcccccC----HHHHhhChhhhhh
Confidence                      011236788999999999999999999    9999999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-40  Score=317.50  Aligned_cols=253  Identities=30%  Similarity=0.426  Sum_probs=203.7

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~~  162 (457)
                      |++.+.||.|+||+||+|...    .+++.||+|.+......  .......+|++.+++++ |+||+++++++..++..|
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~----~~~~~~~ik~~~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~   74 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNK----ETGELVAIKKMKKKFYS--WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELY   74 (283)
T ss_pred             CeeheeeccCCceEEEEEEEC----CCCcEEEEEEehhhccc--hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEE
Confidence            678899999999999999976    36789999998654221  12233456889999998 999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+ +++|.+++.......+++..+..++.|++.+|.|||++|++|+||+|+||+++.++.++|+|||++.......
T Consensus        75 lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          75 FVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             EEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence            999999 8899888877644578999999999999999999999999999999999999999999999999875432110


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                       .....|+.
T Consensus       154 ~-----------------------------------------------------------------------~~~~~~~~  162 (283)
T cd07830         154 P-----------------------------------------------------------------------YTDYVSTR  162 (283)
T ss_pred             C-----------------------------------------------------------------------cCCCCCcc
Confidence            0                                                                       01235888


Q ss_pred             CccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-------------------CC---
Q 012762          323 EYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-------------------PK---  379 (457)
Q Consensus       323 ~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-------------------~~---  379 (457)
                      .|+|||++.+ ..++.++|+||||+++|||++|+.||...........+.......                   +.   
T Consensus       163 ~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
T cd07830         163 WYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAP  242 (283)
T ss_pred             cccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccccccccc
Confidence            9999998854 447899999999999999999999998766544443332211000                   00   


Q ss_pred             ------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 ------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 ------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                            ....+.++.+++.+||+.||++||+    +.|++.||||
T Consensus       243 ~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt----~~ei~~~~~~  283 (283)
T cd07830         243 TSLHQLIPNASPEAIDLIKDMLRWDPKKRPT----ASQALQHPYF  283 (283)
T ss_pred             ccHHHHcccCCHHHHHHHHHhcccCcccCCC----HHHHhhCCCC
Confidence                  0123577999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=8.8e-40  Score=310.43  Aligned_cols=255  Identities=24%  Similarity=0.359  Sum_probs=210.1

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      +++.+.||.|+||.||+|.+.......+..||+|++.....  ......+..|+++++.++|+||+++++++...+..|+
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   78 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD--EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMI   78 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC--hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEE
Confidence            45788999999999999998753323458899999965422  2245678889999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      +|||+++++|.+++.......+++..+..++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++........
T Consensus        79 i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  158 (258)
T smart00219       79 VMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY  158 (258)
T ss_pred             EEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccc
Confidence            99999999999998775433389999999999999999999999999999999999999999999999999765432210


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                      ..                                                                     .....++..
T Consensus       159 ~~---------------------------------------------------------------------~~~~~~~~~  169 (258)
T smart00219      159 YK---------------------------------------------------------------------KKGGKLPIR  169 (258)
T ss_pred             cc---------------------------------------------------------------------cccCCCccc
Confidence            00                                                                     000126789


Q ss_pred             ccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          324 YLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       324 y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      |+|||.+.+..++.++|||||||++|+|++ |..||...........+.... ..+....++.++.+++.+||..||++|
T Consensus       170 y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~R  248 (258)
T smart00219      170 WMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGY-RLPKPENCPPEIYKLMLQCWAEDPEDR  248 (258)
T ss_pred             ccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC-CCCCCCcCCHHHHHHHHHHCcCChhhC
Confidence            999999988889999999999999999998 899998876666666555443 333344588999999999999999999


Q ss_pred             CCCCcChHHHhc
Q 012762          403 MGSKMGATAIKR  414 (457)
Q Consensus       403 ps~~~~~~~ll~  414 (457)
                      |+    +.|+++
T Consensus       249 pt----~~~ll~  256 (258)
T smart00219      249 PT----FSELVE  256 (258)
T ss_pred             cC----HHHHHh
Confidence            99    999876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.7e-40  Score=316.90  Aligned_cols=255  Identities=28%  Similarity=0.433  Sum_probs=205.5

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--CcE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--RWS  161 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--~~~  161 (457)
                      |.+.++||.|+||.||+|.+.    .++..||+|++.... ........+..|++++++++|+||+++++++...  +..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~----~~~~~~~~K~~~~~~-~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   75 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNK----KTGELVALKKIRMEN-EKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSI   75 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEEC----CCCeEEEEEEEeccc-ccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcE
Confidence            678999999999999999886    368899999998653 1223345677799999999999999999999888  899


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||++ ++|..++.... ..+++..++.++.||+.||.|||+.|++|+||||+||+++.++.++|+|||++......
T Consensus        76 ~lv~e~~~-~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~  153 (287)
T cd07840          76 YMVFEYMD-HDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKR  153 (287)
T ss_pred             EEEecccc-ccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCC
Confidence            99999995 58888776542 57899999999999999999999999999999999999999999999999997644321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                     ......++
T Consensus       154 ~~~---------------------------------------------------------------------~~~~~~~~  164 (287)
T cd07840         154 NSA---------------------------------------------------------------------DYTNRVIT  164 (287)
T ss_pred             Ccc---------------------------------------------------------------------cccccccc
Confidence            100                                                                     00012467


Q ss_pred             CCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----CC----------------
Q 012762          322 HEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----PK----------------  379 (457)
Q Consensus       322 ~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----~~----------------  379 (457)
                      ..|+|||.+.+. .++.++|||||||++|||++|+.||...........+.......     +.                
T Consensus       165 ~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (287)
T cd07840         165 LWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPY  244 (287)
T ss_pred             cccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccc
Confidence            889999988764 57899999999999999999999998876555444443311100     00                


Q ss_pred             -------CCC-CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 -------EPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 -------~~~-~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                             ... ++..+.+++.+||..||++||+    +.+++.||||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~~l~~~~~  287 (287)
T cd07840         245 KRRLREFFKHLIDPSALDLLDKLLTLDPKKRIS----ADQALQHEYF  287 (287)
T ss_pred             hhHHHHHhcccCCHHHHHHHHHHcCCChhhCcC----HHHHhhCcCC
Confidence                   011 2778999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-41  Score=333.02  Aligned_cols=258  Identities=21%  Similarity=0.334  Sum_probs=220.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      .+..+..+...+.+.||+|.||.||.|............||||.-++...  .+..+.|..|.-||+.++||||++++|+
T Consensus       382 rnyel~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t--~d~tekflqEa~iMrnfdHphIikLIGv  459 (974)
T KOG4257|consen  382 RNYELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCT--PDDTEKFLQEASIMRNFDHPHIIKLIGV  459 (974)
T ss_pred             CcceeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCC--hhhHHHHHHHHHHHHhCCCcchhheeee
Confidence            34556667788889999999999999998766555666899999876432  2346778889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.+ ...+||||++..|.|+.+++.++ ..++......++.||+.||.|||+.++|||||...|||+.+...|||+|||+
T Consensus       460 ~~e-~P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGL  537 (974)
T KOG4257|consen  460 CVE-QPMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGL  537 (974)
T ss_pred             eec-cceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccch
Confidence            985 47899999999999999998864 5688999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.+++.......                                                                   
T Consensus       538 SR~~ed~~yYkaS-------------------------------------------------------------------  550 (974)
T KOG4257|consen  538 SRYLEDDAYYKAS-------------------------------------------------------------------  550 (974)
T ss_pred             hhhccccchhhcc-------------------------------------------------------------------
Confidence            9888755432210                                                                   


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                        .-.-...|||||.+.-..++.++|||-|||.+||++. |..||.+-.+.+.+..+.. .-++|.++.+|+.+..|+.+
T Consensus       551 --~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEn-GeRlP~P~nCPp~LYslmsk  627 (974)
T KOG4257|consen  551 --RGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIEN-GERLPCPPNCPPALYSLMSK  627 (974)
T ss_pred             --ccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecC-CCCCCCCCCCChHHHHHHHH
Confidence              0013567999999999999999999999999999985 9999999888877766554 45788888999999999999


Q ss_pred             HhhhCCCCCCCCC
Q 012762          394 LLVKDPTRRMGSK  406 (457)
Q Consensus       394 ~L~~dP~~Rps~~  406 (457)
                      ||.+||.+||.+.
T Consensus       628 cWayeP~kRPrft  640 (974)
T KOG4257|consen  628 CWAYEPSKRPRFT  640 (974)
T ss_pred             HhccCcccCCcHH
Confidence            9999999999954

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.4e-40  Score=315.33  Aligned_cols=242  Identities=21%  Similarity=0.278  Sum_probs=191.2

Q ss_pred             EecccCcceEEEEEEeccC--------------------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC
Q 012762           89 RLGSGDIGSVYLVQLKSKS--------------------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL  148 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~--------------------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI  148 (457)
                      .||+|+||.||+|.+....                    ......||+|++.....   .....+..|+++++.++||||
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~l~h~ni   78 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHR---DIALAFFETASLMSQVSHIHL   78 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHH---HHHHHHHHHHHHHhcCCCCCe
Confidence            5899999999999864211                    12234689999865432   334567778999999999999


Q ss_pred             ceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---
Q 012762          149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---  225 (457)
Q Consensus       149 v~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---  225 (457)
                      +++++++..+...||||||+++++|..++... .+.+++..+..++.||+.||+|||++||+||||||+|||++..+   
T Consensus        79 v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~  157 (274)
T cd05076          79 AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKE-KGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAE  157 (274)
T ss_pred             eeEEEEEEeCCceEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCccc
Confidence            99999999999999999999999998887653 35789999999999999999999999999999999999997654   


Q ss_pred             ----CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCC
Q 012762          226 ----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP  301 (457)
Q Consensus       226 ----~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (457)
                          .+|++|||++......                                                            
T Consensus       158 ~~~~~~kl~d~g~~~~~~~~------------------------------------------------------------  177 (274)
T cd05076         158 GTSPFIKLSDPGVSFTALSR------------------------------------------------------------  177 (274)
T ss_pred             CccceeeecCCccccccccc------------------------------------------------------------
Confidence                3899999986422100                                                            


Q ss_pred             CCCcccccCCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHh-cCCCCCCCCChHHHHHHHHhcccCCCC
Q 012762          302 GTPEIVAEPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~ell-tG~~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                    ....++..|+|||++.+ ..++.++|||||||++|||+ +|..||........ ..........+.
T Consensus       178 --------------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~-~~~~~~~~~~~~  242 (274)
T cd05076         178 --------------EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEK-ERFYEKKHRLPE  242 (274)
T ss_pred             --------------cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHH-HHHHHhccCCCC
Confidence                          01247788999999876 45899999999999999995 79999987654433 223333333333


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                        ....++.++|.+||..||++||+    +.+|+++
T Consensus       243 --~~~~~~~~li~~cl~~~p~~Rps----~~~il~~  272 (274)
T cd05076         243 --PSCKELATLISQCLTYEPTQRPS----FRTILRD  272 (274)
T ss_pred             --CCChHHHHHHHHHcccChhhCcC----HHHHHHh
Confidence              25568999999999999999999    8998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.5e-40  Score=315.44  Aligned_cols=243  Identities=22%  Similarity=0.283  Sum_probs=191.7

Q ss_pred             EEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEE
Q 012762           88 HRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLL  164 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV  164 (457)
                      +.||.|+||+||+|.++....   .....||+|.+....   ....+.+..|+.+++.++||||+++++++..++..++|
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   77 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH---RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV   77 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh---HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence            368999999999998753211   123458888875432   23445677799999999999999999999998999999


Q ss_pred             EeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC--------EEEeccCCCc
Q 012762          165 TEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--------IMLTDFDLSL  236 (457)
Q Consensus       165 ~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~--------vkl~DFG~s~  236 (457)
                      |||+.+|+|..++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.        ++++|||++.
T Consensus        78 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          78 QEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             EecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            99999999999887642 36899999999999999999999999999999999999987765        6899998864


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                          .
T Consensus       157 ~~~~~--------------------------------------------------------------------------~  162 (258)
T cd05078         157 TVLPK--------------------------------------------------------------------------E  162 (258)
T ss_pred             ccCCc--------------------------------------------------------------------------h
Confidence            32110                                                                          0


Q ss_pred             cccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcC-CCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYG-TTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      .+.++..|+|||++.+. .++.++|||||||++|||++| ..||........ .........++.  ..+.++.+|+.+|
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~li~~~  239 (258)
T cd05078         163 ILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK-LQFYEDRHQLPA--PKWTELANLINQC  239 (258)
T ss_pred             hccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH-HHHHHccccCCC--CCcHHHHHHHHHH
Confidence            23478899999999874 479999999999999999998 566665444332 223333333333  3567899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |+.||++||+    +++|++.
T Consensus       240 l~~~p~~Rps----~~~il~~  256 (258)
T cd05078         240 MDYEPDFRPS----FRAIIRD  256 (258)
T ss_pred             hccChhhCCC----HHHHHHh
Confidence            9999999999    8888764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=1.5e-39  Score=310.27  Aligned_cols=253  Identities=16%  Similarity=0.240  Sum_probs=196.1

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE-cCCcEEEEEe
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD-CPRWSCLLTE  166 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~-~~~~~~lV~E  166 (457)
                      +.||+|+||+||+|.+.... ..+..||+|.+....  .......+.+|+.+++.++||||+++++++. .++..|+|||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~-~~~~~~aiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   77 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSD-GQKIHCAVKSLNRIT--DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLP   77 (262)
T ss_pred             CcccccCCceEEEEEEecCC-CceEEEEEEecCccC--CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEe
Confidence            36899999999999875322 245689999985421  2234456778999999999999999999765 4556899999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      |+.+++|..++.... ....+..+..++.||+.||.|||+.+++||||||+|||++.++.+||+|||++...........
T Consensus        78 ~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~  156 (262)
T cd05058          78 YMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSV  156 (262)
T ss_pred             cCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceee
Confidence            999999999987642 4467778889999999999999999999999999999999999999999999764432110000


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                        .......++..|+|
T Consensus       157 ------------------------------------------------------------------~~~~~~~~~~~y~a  170 (262)
T cd05058         157 ------------------------------------------------------------------HNHTGAKLPVKWMA  170 (262)
T ss_pred             ------------------------------------------------------------------cccccCcCCccccC
Confidence                                                                              00001236778999


Q ss_pred             chhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCC
Q 012762          327 PEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       327 PE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~  405 (457)
                      ||++.+..++.++|||||||++|||++ |.+||...........+... ...+....+++.+.+++.+||..+|++||+ 
T Consensus       171 PE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~-  248 (262)
T cd05058         171 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQG-RRLLQPEYCPDPLYEVMLSCWHPKPEMRPT-  248 (262)
T ss_pred             hhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHcCCChhhCCC-
Confidence            999988889999999999999999999 56777766555544444332 233333457889999999999999999999 


Q ss_pred             CcChHHHhcC
Q 012762          406 KMGATAIKRH  415 (457)
Q Consensus       406 ~~~~~~ll~h  415 (457)
                         +.+|++.
T Consensus       249 ---~~~il~~  255 (262)
T cd05058         249 ---FSELVSR  255 (262)
T ss_pred             ---HHHHHHH
Confidence               8888753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.4e-39  Score=312.21  Aligned_cols=250  Identities=22%  Similarity=0.304  Sum_probs=193.0

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      +.||+|+||.||+|.+..  ..++..+|+|.+.....  ......+.+|+.++++++||||+++++++......|+||||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~--~~~~~~~~~k~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   76 (269)
T cd05087           1 KEIGNGWFGKVILGEVNS--GYTPAQVVVKELRVSAS--VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEF   76 (269)
T ss_pred             CcccccCCceEEEEEEcC--CCCceEEEEEecCCCCC--hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEEC
Confidence            368999999999998652  23556799998865432  22334677799999999999999999999998999999999


Q ss_pred             cCCCChHHHHHhCC---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcc
Q 012762          168 CPGGDLHVLRQRQP---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST  244 (457)
Q Consensus       168 ~~~~sL~~~~~~~~---~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~  244 (457)
                      +++++|.+++....   ...+++..++.++.|++.||.|||+.|++||||||+||+++.++.++|+|||++.........
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~  156 (269)
T cd05087          77 CPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYY  156 (269)
T ss_pred             CCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCccee
Confidence            99999998886532   234667788899999999999999999999999999999999999999999987532211000


Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCc
Q 012762          245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY  324 (457)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  324 (457)
                                                                                          .......|+..|
T Consensus       157 --------------------------------------------------------------------~~~~~~~~~~~y  168 (269)
T cd05087         157 --------------------------------------------------------------------VTPDQLWVPLRW  168 (269)
T ss_pred             --------------------------------------------------------------------ecCCCcCCcccc
Confidence                                                                                000123578899


Q ss_pred             cCchhhcCC-------CCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhc-ccCCCCC---CCCChHHHHHHH
Q 012762          325 LAPEIISGE-------GHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVAR-ALEFPKE---PSVPGPAKDLIA  392 (457)
Q Consensus       325 ~aPE~l~~~-------~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ll~  392 (457)
                      +|||++.+.       .++.++|||||||++|||++ |..||......+.....+.. ....+..   ...++.+.+++.
T Consensus       169 ~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  248 (269)
T cd05087         169 IAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQ  248 (269)
T ss_pred             cCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHH
Confidence            999998643       35789999999999999996 99999876655544333322 2222221   245678999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .|| .+|++||+    +++|++
T Consensus       249 ~c~-~~P~~Rpt----~~~l~~  265 (269)
T cd05087         249 FCW-LQPEQRPS----AEEVHL  265 (269)
T ss_pred             HHh-cCcccCCC----HHHHHH
Confidence            998 68999999    888864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=9.8e-40  Score=312.35  Aligned_cols=243  Identities=20%  Similarity=0.258  Sum_probs=191.3

Q ss_pred             EEecccCcceEEEEEEeccC--------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           88 HRLGSGDIGSVYLVQLKSKS--------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~--------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +.||+|+||+||+|......        ......+|+|++....   ......+..|+.+++.++||||+++++++..+.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH---RDISLAFFETASMMRQVSHKHIVLLYGVCVRDV   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh---hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence            36899999999999854221        1234468999876542   234456777899999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC-------EEEecc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-------IMLTDF  232 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~-------vkl~DF  232 (457)
                      ..++||||+++++|..++... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.       ++++||
T Consensus        78 ~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~  156 (262)
T cd05077          78 ENIMVEEFVEFGPLDLFMHRK-SDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDP  156 (262)
T ss_pred             CCEEEEecccCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCC
Confidence            999999999999998877653 356899999999999999999999999999999999999987664       899999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++......                                                                       
T Consensus       157 g~~~~~~~~-----------------------------------------------------------------------  165 (262)
T cd05077         157 GIPITVLSR-----------------------------------------------------------------------  165 (262)
T ss_pred             CCCccccCc-----------------------------------------------------------------------
Confidence            986433110                                                                       


Q ss_pred             cccccccCCCCccCchhhc-CCCCCccchhhhhhHHHHHHh-cCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          313 VRSMSFVGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~-~~~~~~~sDiwSlG~il~ell-tG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                         ....|+..|+|||++. +..++.++|||||||++|||+ .|..||......+. ...........  ...++++.+|
T Consensus       166 ---~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~l  239 (262)
T cd05077         166 ---QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK-ERFYEGQCMLV--TPSCKELADL  239 (262)
T ss_pred             ---ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH-HHHHhcCccCC--CCChHHHHHH
Confidence               0124788999999987 456899999999999999998 58999876543322 22222322222  2356789999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |.+||+.||.+||+    +.+|+++
T Consensus       240 i~~cl~~dp~~Rp~----~~~il~~  260 (262)
T cd05077         240 MTHCMNYDPNQRPF----FRAIMRD  260 (262)
T ss_pred             HHHHcCCChhhCcC----HHHHHHh
Confidence            99999999999999    8998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-39  Score=312.85  Aligned_cols=244  Identities=22%  Similarity=0.320  Sum_probs=196.3

Q ss_pred             EecccCcceEEEEEEeccCCCCC--ceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEEEE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNG--CFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~--~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      .||+|+||.||+|.++.    ++  ..+|+|.++..  ........+..|++++.++ +||||+++++++...+..|+||
T Consensus         2 ~lg~g~~g~v~~~~~~~----~~~~~~~~~k~~~~~--~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~   75 (270)
T cd05047           2 VIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAI   75 (270)
T ss_pred             cCCCCCCceEEEEEEcC----CCCeeEEEEEEcccc--CCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEE
Confidence            58999999999999863    34  35688887642  2223445677899999999 8999999999999999999999


Q ss_pred             eecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          166 EFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       166 E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      ||+.+++|.+++....              ...+++..++.++.|++.||+|||+.|++||||||+|||++.++.+||+|
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~d  155 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIAD  155 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECC
Confidence            9999999999887532              13578999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++.......                                                                     
T Consensus       156 fgl~~~~~~~~---------------------------------------------------------------------  166 (270)
T cd05047         156 FGLSRGQEVYV---------------------------------------------------------------------  166 (270)
T ss_pred             CCCccccchhh---------------------------------------------------------------------
Confidence            99864211000                                                                     


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                        .......+..|+|||++.+..++.++|||||||++|||++ |..||.+.+.......+.. .........++.++.++
T Consensus       167 --~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  243 (270)
T cd05047         167 --KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ-GYRLEKPLNCDDEVYDL  243 (270)
T ss_pred             --hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhC-CCCCCCCCcCCHHHHHH
Confidence              0000124567999999988889999999999999999996 9999987766555554433 23333344578899999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +.+||..||.+||+    +.++++
T Consensus       244 i~~~l~~~p~~Rps----~~~il~  263 (270)
T cd05047         244 MRQCWREKPYERPS----FAQILV  263 (270)
T ss_pred             HHHHcccChhhCCC----HHHHHH
Confidence            99999999999999    777764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.2e-39  Score=318.52  Aligned_cols=260  Identities=22%  Similarity=0.317  Sum_probs=206.0

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|+..+.||+|+||.||+|.+..........||+|++....  .......+..|+.+++.++|+||+++++++...
T Consensus         4 ~~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~   81 (303)
T cd05110           4 LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETT--GPKANVEFMDEALIMASMDHPHLVRLLGVCLSP   81 (303)
T ss_pred             cchhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC
Confidence            456789999999999999999998864322223467999886532  223334677899999999999999999998754


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                       ..++++||+++|+|.+++... ...+++..+..++.||+.||.|||++||+|+||||+|||++.++.+||+|||+++..
T Consensus        82 -~~~~v~e~~~~g~l~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~  159 (303)
T cd05110          82 -TIQLVTQLMPHGCLLDYVHEH-KDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (303)
T ss_pred             -CceeeehhcCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccc
Confidence             467999999999999888764 246889999999999999999999999999999999999999999999999998644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                    ......
T Consensus       160 ~~~~~~--------------------------------------------------------------------~~~~~~  171 (303)
T cd05110         160 EGDEKE--------------------------------------------------------------------YNADGG  171 (303)
T ss_pred             cCcccc--------------------------------------------------------------------cccCCC
Confidence            311100                                                                    000012


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .++..|+|||++.+..++.++|||||||++|||++ |..||.+..... ...++.....++....++.++.+++.+||..
T Consensus       172 ~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~  250 (303)
T cd05110         172 KMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE-IPDLLEKGERLPQPPICTIDVYMVMVKCWMI  250 (303)
T ss_pred             ccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            35778999999998889999999999999999997 999998765443 3344444445555556788999999999999


Q ss_pred             CCCCCCCCCcChHHHhcC
Q 012762          398 DPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~h  415 (457)
                      ||++||+    +.++++.
T Consensus       251 ~p~~Rp~----~~~l~~~  264 (303)
T cd05110         251 DADSRPK----FKELAAE  264 (303)
T ss_pred             ChhhCcC----HHHHHHH
Confidence            9999999    7776653

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-40  Score=332.74  Aligned_cols=245  Identities=30%  Similarity=0.447  Sum_probs=203.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~  158 (457)
                      ..++|.+...+|.|+|+.|-.|.++.    +++.+++|++.+..       .....|+.++.+. +||||+++.+.+.++
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~----t~~~~~vkii~~~~-------~~~~~e~~~~~~~~~h~niv~~~~v~~~~  388 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSP----TDQEPAVKIISKRA-------DDNQDEIPISLLVRDHPNIVKSHDVYEDG  388 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccc----cccchhheeccccc-------cccccccchhhhhcCCCcceeecceecCC
Confidence            35689999999999999999999874    78889999997651       1223377776665 799999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE-ccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV-RSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll-~~~~~vkl~DFG~s~~  237 (457)
                      .+.|+|||++.|+-|.+.+...  + ....++..|+.||+.++.|||++|||||||||+|||+ +..|+++|+|||+++.
T Consensus       389 ~~~~~v~e~l~g~ell~ri~~~--~-~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  389 KEIYLVMELLDGGELLRRIRSK--P-EFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSE  465 (612)
T ss_pred             ceeeeeehhccccHHHHHHHhc--c-hhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhh
Confidence            9999999999998886655443  2 3337788899999999999999999999999999999 6889999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .+..                                                                         .++
T Consensus       466 ~~~~-------------------------------------------------------------------------~~t  472 (612)
T KOG0603|consen  466 LERS-------------------------------------------------------------------------CDT  472 (612)
T ss_pred             Cchh-------------------------------------------------------------------------hcc
Confidence            5432                                                                         112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      -+-|..|.|||++....|+.++||||||++||+||+|+.||........+..   +....+....+++.+++||+.||+.
T Consensus       473 p~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~---~i~~~~~s~~vS~~AKdLl~~LL~~  549 (612)
T KOG0603|consen  473 PALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHT---RIQMPKFSECVSDEAKDLLQQLLQV  549 (612)
T ss_pred             cchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHH---hhcCCccccccCHHHHHHHHHhccC
Confidence            2468899999999999999999999999999999999999988776632222   2222222256999999999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ||.+|++    +.+++.||||
T Consensus       550 dP~~Rl~----~~~i~~h~w~  566 (612)
T KOG0603|consen  550 DPALRLG----ADEIGAHPWF  566 (612)
T ss_pred             ChhhCcC----hhhhccCcch
Confidence            9999999    9999999999

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-41  Score=335.76  Aligned_cols=260  Identities=20%  Similarity=0.265  Sum_probs=220.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..-|..++.++.++||+|.||+||+|.|+... ..-..||||+++.....  .....|++|+.+|.+|+|+|+++|||+.
T Consensus       104 kclIpee~i~l~e~LG~GsFgvV~rg~Wt~ps-gk~V~VAVKclr~d~l~--~~mddflrEas~M~~L~H~hliRLyGvV  180 (1039)
T KOG0199|consen  104 KCLIPEEQIKLYELLGEGSFGVVKRGTWTQPS-GKHVNVAVKCLRDDSLN--AIMDDFLREASHMLKLQHPHLIRLYGVV  180 (1039)
T ss_pred             ceeccHHHHHHHHHhcCcceeeEeeccccCCC-CcEEeEEEEeccCCccc--hhHHHHHHHHHHHHhccCcceeEEeeee
Confidence            34456678889999999999999999998632 23457899999765442  2667899999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+ ..+.||||++.+|+|.+.+.......|.......|+.||+.||.||.++++|||||...|+||-....|||+||||.
T Consensus       181 l~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLm  259 (1039)
T KOG0199|consen  181 LD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLM  259 (1039)
T ss_pred             cc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccce
Confidence            87 77899999999999998888766678889999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.+..........                                                               ..  
T Consensus       260 RaLg~ned~Yvm~---------------------------------------------------------------p~--  274 (1039)
T KOG0199|consen  260 RALGENEDMYVMA---------------------------------------------------------------PQ--  274 (1039)
T ss_pred             eccCCCCcceEec---------------------------------------------------------------CC--
Confidence            7665332211100                                                               00  


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                        .--...|+|||.++...++.++|||+|||+||||++ |+.||.+-...+++.++- ..-+++....+++++.+++..|
T Consensus       275 --rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD-~~erLpRPk~csedIY~imk~c  351 (1039)
T KOG0199|consen  275 --RKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNID-AGERLPRPKYCSEDIYQIMKNC  351 (1039)
T ss_pred             --CcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhcc-ccccCCCCCCChHHHHHHHHHh
Confidence              013568999999999999999999999999999996 999999988888887766 6668888888999999999999


Q ss_pred             hhhCCCCCCCCCc
Q 012762          395 LVKDPTRRMGSKM  407 (457)
Q Consensus       395 L~~dP~~Rps~~~  407 (457)
                      |..+|.+||++..
T Consensus       352 Wah~paDRptFsa  364 (1039)
T KOG0199|consen  352 WAHNPADRPTFSA  364 (1039)
T ss_pred             ccCCccccccHHH
Confidence            9999999999443

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-40  Score=316.58  Aligned_cols=254  Identities=30%  Similarity=0.436  Sum_probs=206.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |.+.+.||.|++|.||+|.+.    .+++.+|+|.+..... .......+..|+++|++++|+||+++++++..++..|+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~----~~~~~~~ik~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   75 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDK----LTGEIVAIKKIKLRFE-SEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYL   75 (283)
T ss_pred             CccceeeecCCCceEEEEEcC----CCCcEEEEEEeccccc-cchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEE
Confidence            677899999999999999875    4788999999875432 22344567779999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||+. ++|..++.... ..+++..+..++.||+.||.|||+.||+|+||||+||+++.++.++|+|||.+........
T Consensus        76 v~e~~~-~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~  153 (283)
T cd05118          76 VFEFMD-TDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR  153 (283)
T ss_pred             EEeccC-CCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc
Confidence            999995 58877766532 5789999999999999999999999999999999999999999999999998754432110


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                            ......++..
T Consensus       154 ----------------------------------------------------------------------~~~~~~~~~~  163 (283)
T cd05118         154 ----------------------------------------------------------------------PYTHYVVTRW  163 (283)
T ss_pred             ----------------------------------------------------------------------cccCccCccc
Confidence                                                                                  0001247889


Q ss_pred             ccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-------------------CC-----
Q 012762          324 YLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-------------------FP-----  378 (457)
Q Consensus       324 y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-------------------~~-----  378 (457)
                      |+|||.+.+. .++.++||||||+++|+|++|+.||...+..+.+..+......                   ++     
T Consensus       164 ~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (283)
T cd05118         164 YRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGM  243 (283)
T ss_pred             ccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhcccccc
Confidence            9999999877 6899999999999999999999999887765544443322111                   00     


Q ss_pred             ----CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          379 ----KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       379 ----~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                          ....++.++.++|.+||..||.+||+    +.++++||||
T Consensus       244 ~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~ll~~~~~  283 (283)
T cd05118         244 PLPKLFPNASPQALDLLSQMLHYDPHKRIT----AEQALAHPYF  283 (283)
T ss_pred             CHHHhhhhhCHHHHHHHHHHhccCcccCcC----HHHHhhCCCC
Confidence                01235678999999999999999999    9999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-40  Score=315.90  Aligned_cols=254  Identities=28%  Similarity=0.425  Sum_probs=207.2

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |++.+.||+|+||.||+|...    .+++.||+|++.... ........+..|++++++++|+||+++++++...+..++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~----~~~~~~~iK~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~   75 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDK----KTGEIVALKKIRLDN-EEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYL   75 (282)
T ss_pred             CeeehcccccCcceEEEeeec----CCCcEEEEEEecccc-ccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEE
Confidence            677889999999999999876    368899999997653 223344566779999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      ||||++ ++|..++.... ..+++..++.++.|++.||.|||++||+|+||+|+||+++.++.++|+|||++........
T Consensus        76 v~e~~~-~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~  153 (282)
T cd07829          76 VFEYCD-MDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR  153 (282)
T ss_pred             EecCcC-cCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc
Confidence            999996 68999887743 4699999999999999999999999999999999999999999999999998754321100


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                            ......++..
T Consensus       154 ----------------------------------------------------------------------~~~~~~~~~~  163 (282)
T cd07829         154 ----------------------------------------------------------------------TYTHEVVTLW  163 (282)
T ss_pred             ----------------------------------------------------------------------ccCccccCcC
Confidence                                                                                  0001236778


Q ss_pred             ccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc------------------cCCCC-----
Q 012762          324 YLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA------------------LEFPK-----  379 (457)
Q Consensus       324 y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~------------------~~~~~-----  379 (457)
                      |+|||.+.+. .++.++|||||||++|||++|..||........+.++....                  ..++.     
T Consensus       164 ~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (282)
T cd07829         164 YRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKD  243 (282)
T ss_pred             cCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccc
Confidence            9999999876 68999999999999999999999998876555444433211                  00010     


Q ss_pred             ----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          380 ----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       380 ----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                          .+.++.++.++|.+||..||++||+    +.+++.||||
T Consensus       244 ~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~----~~~~l~~p~~  282 (282)
T cd07829         244 LEKVLPRLDPEGIDLLSKMLQYNPAKRIS----AKEALKHPYF  282 (282)
T ss_pred             hHHhcccccHHHHHHHHHhhccCcccCCC----HHHHhhCcCC
Confidence                1234678999999999999999999    9999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=6.5e-40  Score=314.03  Aligned_cols=252  Identities=21%  Similarity=0.307  Sum_probs=201.4

Q ss_pred             EEecccCcceEEEEEEeccC--CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEE
Q 012762           88 HRLGSGDIGSVYLVQLKSKS--SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      +.||+|+||.||+|+++...  ...++.+|+|.+.+..  .......+.+|+++++.++||||+++++++...+..|+||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   78 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGA--TDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM   78 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhccc--chhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence            36899999999999876422  2344689999886532  1234556778999999999999999999999999999999


Q ss_pred             eecCCCChHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-----CEEEeccCCC
Q 012762          166 EFCPGGDLHVLRQRQ-----PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-----HIMLTDFDLS  235 (457)
Q Consensus       166 E~~~~~sL~~~~~~~-----~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-----~vkl~DFG~s  235 (457)
                      ||+++++|.+++...     ....+++..+..++.||+.||.|||+.+++|+||||+||+++.++     .++|+|||++
T Consensus        79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~  158 (269)
T cd05044          79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA  158 (269)
T ss_pred             eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence            999999999888653     224478899999999999999999999999999999999999877     8999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ..........                                                                    ..
T Consensus       159 ~~~~~~~~~~--------------------------------------------------------------------~~  170 (269)
T cd05044         159 RDIYKSDYYR--------------------------------------------------------------------KE  170 (269)
T ss_pred             cccccccccc--------------------------------------------------------------------cC
Confidence            5442211000                                                                    00


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....++..|+|||++.+..++.++|||||||++|||++ |..||...........+.. ...+.....++..+.+++.+|
T Consensus       171 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~  249 (269)
T cd05044         171 GEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTA-GGRLQKPENCPDKIYQLMTNC  249 (269)
T ss_pred             cccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhc-CCccCCcccchHHHHHHHHHH
Confidence            01235778999999998889999999999999999998 9999987766555544432 233334456889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |..+|.+||+    +.++++
T Consensus       250 l~~~p~~Rp~----~~~i~~  265 (269)
T cd05044         250 WAQDPSERPT----FDRIQE  265 (269)
T ss_pred             cCCCcccCCC----HHHHHH
Confidence            9999999999    888764

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=2e-39  Score=307.43  Aligned_cols=246  Identities=24%  Similarity=0.357  Sum_probs=201.6

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEee
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      ++||.|+||.||+|.+.     .++.||+|++......  .....+..|++++++++|+||+++++++......++||||
T Consensus         1 ~~lg~g~~g~v~~~~~~-----~~~~v~~K~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   73 (251)
T cd05041           1 EKIGKGNFGDVYKGVLK-----GNTEVAVKTCRSTLPP--DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMEL   73 (251)
T ss_pred             CccccCCCceEEEEEEe-----CCCcEEEEeccccCCH--HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEc
Confidence            46899999999999875     3788999998754332  3456778899999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      +.+++|..++.... ..+++..+..++.|++.||.|||+++++||||||+|||++.++.++|+|||++..........  
T Consensus        74 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~--  150 (251)
T cd05041          74 VPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTV--  150 (251)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCccee--
Confidence            99999998886642 468899999999999999999999999999999999999999999999999975432110000  


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                        ......++..|+||
T Consensus       151 ------------------------------------------------------------------~~~~~~~~~~y~~P  164 (251)
T cd05041         151 ------------------------------------------------------------------SDGLKQIPIKWTAP  164 (251)
T ss_pred             ------------------------------------------------------------------ccccCcceeccCCh
Confidence                                                                              00011246679999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      |.+.+..++.++|||||||++|||++ |..||...........+. .....+....++..+.+++.+||..+|.+||+  
T Consensus       165 E~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~--  241 (251)
T cd05041         165 EALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIE-SGYRMPAPQLCPEEIYRLMLQCWAYDPENRPS--  241 (251)
T ss_pred             HhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHh-cCCCCCCCccCCHHHHHHHHHHhccChhhCcC--
Confidence            99998889999999999999999998 899998776554444433 33344444567889999999999999999999  


Q ss_pred             cChHHHhc
Q 012762          407 MGATAIKR  414 (457)
Q Consensus       407 ~~~~~ll~  414 (457)
                        +.++++
T Consensus       242 --~~ell~  247 (251)
T cd05041         242 --FSEIYN  247 (251)
T ss_pred             --HHHHHH
Confidence              998876

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-41  Score=340.14  Aligned_cols=261  Identities=21%  Similarity=0.342  Sum_probs=228.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+++.....|.++||.|.||.||.|+++... +....||||.++..  ..+.....|..|+.||-+++||||++|.|+..
T Consensus       624 kEId~s~i~Ie~VIGaGEFGEVc~GrLk~pg-kre~~VAIKTLK~G--ytekqrrdFL~EAsIMGQFdHPNIIrLEGVVT  700 (996)
T KOG0196|consen  624 KEIDPSCVKIEKVIGAGEFGEVCSGRLKLPG-KREITVAIKTLKAG--YTEKQRRDFLSEASIMGQFDHPNIIRLEGVVT  700 (996)
T ss_pred             hhcChhheEEEEEEecccccceecccccCCC-CcceeEEEeeeccC--ccHHHHhhhhhhhhhcccCCCCcEEEEEEEEe
Confidence            4567778999999999999999999988533 35678999999765  44556677889999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ....++||+|||++|+|..++..+. +.|+..++..+++.|+.|+.||-+.|.|||||...|||++.+..+|++|||+++
T Consensus       701 ks~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSR  779 (996)
T KOG0196|consen  701 KSKPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSR  779 (996)
T ss_pred             cCceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEecccccee
Confidence            9999999999999999999998764 679999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+++......                                                                     .
T Consensus       780 vledd~~~~y---------------------------------------------------------------------t  790 (996)
T KOG0196|consen  780 VLEDDPEAAY---------------------------------------------------------------------T  790 (996)
T ss_pred             ecccCCCccc---------------------------------------------------------------------c
Confidence            8764332111                                                                     0


Q ss_pred             cccC--CCCccCchhhcCCCCCccchhhhhhHHHHHHh-cCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          317 SFVG--THEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       317 ~~~g--t~~y~aPE~l~~~~~~~~sDiwSlG~il~ell-tG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      +.-|  ...|.|||.+....++.++||||+|++|||.+ +|+.||+++++++.+..+ ...+++|.+..+|..+.+||..
T Consensus       791 t~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaI-e~gyRLPpPmDCP~aL~qLMld  869 (996)
T KOG0196|consen  791 TLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAI-EQGYRLPPPMDCPAALYQLMLD  869 (996)
T ss_pred             ccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHH-HhccCCCCCCCCcHHHHHHHHH
Confidence            1112  46899999999999999999999999999988 599999999998877664 5778999999999999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||++|-..||.    +.||+.+
T Consensus       870 CWqkdR~~RP~----F~qiV~~  887 (996)
T KOG0196|consen  870 CWQKDRNRRPK----FAQIVST  887 (996)
T ss_pred             HHHHHhhcCCC----HHHHHHH
Confidence            99999999999    7887664

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-40  Score=351.45  Aligned_cols=270  Identities=28%  Similarity=0.376  Sum_probs=205.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC---
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP---  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~---  158 (457)
                      .||..++.||+||||.||+|+.+    -+|+.||||.+....  +......+.+|+.+|.+|+|||||++|..+.+.   
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNK----lDGr~YAIKKIpl~~--s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~  552 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNK----LDGREYAIKKIPLKA--SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAE  552 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeec----ccchhhhhhhccCch--HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCc
Confidence            47888999999999999999987    489999999997764  455667788899999999999999988744210   


Q ss_pred             --------------------------------------------------------------------------------
Q 012762          159 --------------------------------------------------------------------------------  158 (457)
Q Consensus       159 --------------------------------------------------------------------------------  158 (457)
                                                                                                      
T Consensus       553 ~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~  632 (1351)
T KOG1035|consen  553 LTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSN  632 (1351)
T ss_pred             cccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Q 012762          159 ------------------------------------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE  202 (457)
Q Consensus       159 ------------------------------------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~  202 (457)
                                                          ..+||-||||+...|++++.++.... .....+.+++||++||.
T Consensus       633 tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~-~~d~~wrLFreIlEGLa  711 (1351)
T KOG1035|consen  633 TSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS-QRDEAWRLFREILEGLA  711 (1351)
T ss_pred             ccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch-hhHHHHHHHHHHHHHHH
Confidence                                                01588999999999998888753221 46788999999999999


Q ss_pred             HHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC-CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 012762          203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN-STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCI  281 (457)
Q Consensus       203 yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (457)
                      |+|++|||||||||.||+++.++.|||+|||++..... ........   .                             
T Consensus       712 YIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~---~-----------------------------  759 (1351)
T KOG1035|consen  712 YIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDL---S-----------------------------  759 (1351)
T ss_pred             HHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhcc---C-----------------------------
Confidence            99999999999999999999999999999999865321 00000000   0                             


Q ss_pred             CCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC---CCccchhhhhhHHHHHHhcCCCCC
Q 012762          282 VPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG---HGNAVDWWTLGIFIFELFYGTTPF  358 (457)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~---~~~~sDiwSlG~il~elltG~~Pf  358 (457)
                                           .........+...++.+||..|+|||++.+..   |+.|+||||||+||+||+   +||
T Consensus       760 ---------------------~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~---yPF  815 (1351)
T KOG1035|consen  760 ---------------------FSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEML---YPF  815 (1351)
T ss_pred             ---------------------ccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHh---ccC
Confidence                                 00000111122334668999999999998765   999999999999999999   467


Q ss_pred             CCCChH-HHHHHHHhcccCCC---CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          359 KGIDHE-LTLANVVARALEFP---KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       359 ~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      ...-+. ..+.+...+.++.+   ..+.. +.-..+|+.||+.||.+|||    |.|||++.||-
T Consensus       816 ~TsMERa~iL~~LR~g~iP~~~~f~~~~~-~~e~slI~~Ll~hdP~kRPt----A~eLL~s~llp  875 (1351)
T KOG1035|consen  816 GTSMERASILTNLRKGSIPEPADFFDPEH-PEEASLIRWLLSHDPSKRPT----ATELLNSELLP  875 (1351)
T ss_pred             CchHHHHHHHHhcccCCCCCCcccccccc-hHHHHHHHHHhcCCCccCCC----HHHHhhccCCC
Confidence            654333 34455444444444   11222 23578999999999999999    99999999998

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=5.1e-39  Score=312.73  Aligned_cols=262  Identities=17%  Similarity=0.186  Sum_probs=189.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH--------HHHHHHHHHHHHHcCCCCCce
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK--------ESRARIEREILEMLDHPFLPT  150 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~--------~~~~~~E~~il~~l~H~nIv~  150 (457)
                      +...+|++.++||+|+||+||+|.+..... .+..+|+|+...........        ......+...+..++|+||++
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~-~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~   87 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHC-INNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPK   87 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcc-cccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCc
Confidence            444689999999999999999999764211 25567778653322111000        011112233445568999999


Q ss_pred             EEEEEEcCC----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC
Q 012762          151 LYATLDCPR----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       151 l~~~~~~~~----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~  226 (457)
                      +++++....    ..+++||++ ..++..++...  ...++..++.++.||+.||.|||+++|+||||||+|||++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~  164 (294)
T PHA02882         88 YYGCGSFKRCRMYYRFILLEKL-VENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNR  164 (294)
T ss_pred             EEEeeeEecCCceEEEEEEehh-ccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCc
Confidence            999765443    347889988 56777776653  44678889999999999999999999999999999999999999


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      ++|+|||+++...........                                                           
T Consensus       165 ~~l~DFGla~~~~~~~~~~~~-----------------------------------------------------------  185 (294)
T PHA02882        165 GYIIDYGIASHFIIHGKHIEY-----------------------------------------------------------  185 (294)
T ss_pred             EEEEEcCCceeeccCCccccc-----------------------------------------------------------
Confidence            999999998655321110000                                                           


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-H--------HHHHHhcccCC
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-T--------LANVVARALEF  377 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~--------~~~~~~~~~~~  377 (457)
                          .........||+.|+|||++.+..++.++|||||||++|||++|..||.+..... .        ..++...... 
T Consensus       186 ----~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  260 (294)
T PHA02882        186 ----SKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEGKIK-  260 (294)
T ss_pred             ----ccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhhhhc-
Confidence                0000112359999999999999999999999999999999999999998763221 1        1222222222 


Q ss_pred             CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       378 ~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                        ...++..+.++++.||..+|++||+    .++|++
T Consensus       261 --~~~~~~~~~~~~~~~~~~~~~~rp~----~~~l~~  291 (294)
T PHA02882        261 --IKNANKFIYDFIECVTKLSYEEKPD----YDALIK  291 (294)
T ss_pred             --cCCCCHHHHHHHHHHHhCCCCCCCC----HHHHHH
Confidence              2346788999999999999999999    888865

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=9.2e-40  Score=307.86  Aligned_cols=233  Identities=31%  Similarity=0.406  Sum_probs=189.3

Q ss_pred             cCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCC
Q 012762           93 GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGD  172 (457)
Q Consensus        93 G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~s  172 (457)
                      |.||.||+|+++    .+++.||+|++.+..        ....|...+....||||+++++++...+..|+||||++|++
T Consensus         4 g~~~~v~~~~~~----~~~~~~~~K~i~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   71 (237)
T cd05576           4 GVIDKVLLVMDT----RTQQTFILKGLRKSS--------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGK   71 (237)
T ss_pred             cccceEEEEEEc----cCCcEEEEEeecchh--------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCC
Confidence            889999999987    478899999997642        12234455555679999999999999999999999999999


Q ss_pred             hHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCC
Q 012762          173 LHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQS  252 (457)
Q Consensus       173 L~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~  252 (457)
                      |.+++...  ..+++..+..++.|++.||.|||++||+||||||+||+++.++.++++|||++.......          
T Consensus        72 L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~----------  139 (237)
T cd05576          72 LWSHISKF--LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC----------  139 (237)
T ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcccccc----------
Confidence            99888764  468999999999999999999999999999999999999999999999999764332110          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcC
Q 012762          253 PPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG  332 (457)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  332 (457)
                                                                                     ....++..|+|||++.+
T Consensus       140 ---------------------------------------------------------------~~~~~~~~y~aPE~~~~  156 (237)
T cd05576         140 ---------------------------------------------------------------DGEAVENMYCAPEVGGI  156 (237)
T ss_pred             ---------------------------------------------------------------ccCCcCccccCCcccCC
Confidence                                                                           01235678999999988


Q ss_pred             CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC-cChHH
Q 012762          333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATA  411 (457)
Q Consensus       333 ~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~-~~~~~  411 (457)
                      ..++.++||||+||++|||++|+.||.......      ........+..++..+.++|.+||+.||++|+++. ..+++
T Consensus       157 ~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~  230 (237)
T cd05576         157 SEETEACDWWSLGAILFELLTGKTLVECHPSGI------NTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVED  230 (237)
T ss_pred             CCCCchhhHHHHHHHHHHHHHCcchhhcCchhc------ccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHH
Confidence            889999999999999999999999886533211      11111122234788999999999999999999943 23699


Q ss_pred             HhcCCCC
Q 012762          412 IKRHQFF  418 (457)
Q Consensus       412 ll~hp~f  418 (457)
                      +++||||
T Consensus       231 ~~~h~~~  237 (237)
T cd05576         231 IKSHPFF  237 (237)
T ss_pred             HHcCCCC
Confidence            9999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3e-39  Score=307.34  Aligned_cols=240  Identities=22%  Similarity=0.262  Sum_probs=190.8

Q ss_pred             EEecccCcceEEEEEEeccC------CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           88 HRLGSGDIGSVYLVQLKSKS------SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~------~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.||+|+||.||+|.++...      ......+++|++.....    ....+.+|+++|+.++|+||+++++++.. ...
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR----DSLAFFETASLMSQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh----hHHHHHHHHHHHHcCCCcchhheeeEEec-CCc
Confidence            46899999999999987432      11224678888764421    15677889999999999999999999988 778


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-------CEEEeccCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-------HIMLTDFDL  234 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-------~vkl~DFG~  234 (457)
                      ++||||+.+++|..++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++       .+||+|||+
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             EEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            99999999999999887753 2689999999999999999999999999999999999999887       799999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       155 a~~~~~~-------------------------------------------------------------------------  161 (259)
T cd05037         155 PITVLSR-------------------------------------------------------------------------  161 (259)
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            7543210                                                                         


Q ss_pred             cccccCCCCccCchhhcCC--CCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGE--GHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~--~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                       ....++..|+|||++.+.  .++.++|||||||++|+|++ |..||............. .....+..  ....+.+++
T Consensus       162 -~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~li  237 (259)
T cd05037         162 -EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQ-DQHRLPMP--DCAELANLI  237 (259)
T ss_pred             -cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHh-cCCCCCCC--CchHHHHHH
Confidence             012467789999999877  68999999999999999999 688887764333222222 22222221  237899999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhc
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .+||..||.+||+    +.++++
T Consensus       238 ~~~l~~~p~~Rpt----~~~il~  256 (259)
T cd05037         238 NQCWTYDPTKRPS----FRAILR  256 (259)
T ss_pred             HHHhccChhhCCC----HHHHHH
Confidence            9999999999999    888875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4e-40  Score=325.40  Aligned_cols=257  Identities=22%  Similarity=0.312  Sum_probs=227.5

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ...|++...+..+.++||-|.||.||.|.|+.    -...||||.++..    .....+|..|..+|+.++|||+|+++|
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKk----yslTvAVKtLKED----tMeveEFLkEAAvMKeikHpNLVqLLG  330 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKED----TMEVEEFLKEAAVMKEIKHPNLVQLLG  330 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeec----cceeeehhhhhhc----chhHHHHHHHHHHHHhhcCccHHHHhh
Confidence            46788888899999999999999999999984    6678999999654    346788999999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +|..+...|||+|||..|+|.+++.++....++.-..+.++.||..|++||..+++|||||...|+|+.++..||++|||
T Consensus       331 VCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFG  410 (1157)
T KOG4278|consen  331 VCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFG  410 (1157)
T ss_pred             hhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccc
Confidence            99999999999999999999999999877778888888999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.+...+.++...                                                                 
T Consensus       411 LsRlMtgDTYTAHAG-----------------------------------------------------------------  425 (1157)
T KOG4278|consen  411 LSRLMTGDTYTAHAG-----------------------------------------------------------------  425 (1157)
T ss_pred             hhhhhcCCceecccC-----------------------------------------------------------------
Confidence            999987665543210                                                                 


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                          ---...|.|||.+..+.++.++|||+|||+|||+.| |-.||.+.+..+.+ ..+...+++..+..||+.+.+||+
T Consensus       426 ----AKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY-~LLEkgyRM~~PeGCPpkVYeLMr  500 (1157)
T KOG4278|consen  426 ----AKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-GLLEKGYRMDGPEGCPPKVYELMR  500 (1157)
T ss_pred             ----ccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHH-HHHhccccccCCCCCCHHHHHHHH
Confidence                002567999999999999999999999999999996 88999997766554 467788899888899999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHH
Q 012762          393 QLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~l  412 (457)
                      .||+++|.+||+    +.|+
T Consensus       501 aCW~WsPsDRPs----Faei  516 (1157)
T KOG4278|consen  501 ACWNWSPSDRPS----FAEI  516 (1157)
T ss_pred             HHhcCCcccCcc----HHHH
Confidence            999999999999    5555

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=7.8e-41  Score=325.04  Aligned_cols=257  Identities=26%  Similarity=0.409  Sum_probs=216.4

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC------CCCCceEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD------HPFLPTLY  152 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~------H~nIv~l~  152 (457)
                      +.-.+|.+..-.|+|-|++|..|.+..    .|..||||+|....+    ..+.-+.|++||++|+      ..|+++++
T Consensus       429 ~LD~RY~V~~~~GkGvFs~Vvra~D~~----r~~~vAiKIIRnNE~----M~KtGl~EleiLkKL~~AD~Edk~Hclrl~  500 (752)
T KOG0670|consen  429 LLDSRYEVQGYTGKGVFSTVVRARDQA----RGQEVAIKIIRNNEV----MHKTGLKELEILKKLNDADPEDKFHCLRLF  500 (752)
T ss_pred             hhcceeEEEeccccceeeeeeeccccC----CCCeeEEEEeecchH----HhhhhhHHHHHHHHhhccCchhhhHHHHHH
Confidence            334678999999999999999998764    667999999987654    4555667999999994      46799999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEe
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQ-PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLT  230 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~  230 (457)
                      ..|...+++|||+|-+ ..+|.++++.. .+-++....++.|+.||..||..|-.+||+|.||||+||||++. ..+|||
T Consensus       501 r~F~hknHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLC  579 (752)
T KOG0670|consen  501 RHFKHKNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLC  579 (752)
T ss_pred             HHhhhcceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeec
Confidence            9999999999999999 89999888764 34579999999999999999999999999999999999999976 578999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||.|-.......+                                                                  
T Consensus       580 DfGSA~~~~eneit------------------------------------------------------------------  593 (752)
T KOG0670|consen  580 DFGSASFASENEIT------------------------------------------------------------------  593 (752)
T ss_pred             cCcccccccccccc------------------------------------------------------------------
Confidence            99987544332221                                                                  


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC----------
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE----------  380 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~----------  380 (457)
                            .+.-+.-|.|||++.|.+|+...|+||+||+||||+||+..|+|.++.+++...+.....+|..          
T Consensus       594 ------PYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dq  667 (752)
T KOG0670|consen  594 ------PYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQ  667 (752)
T ss_pred             ------HHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhh
Confidence                  1234567999999999999999999999999999999999999999999888877766666541          


Q ss_pred             -----------------------------------------CCCC-------hHHHHHHHHHhhhCCCCCCCCCcChHHH
Q 012762          381 -----------------------------------------PSVP-------GPAKDLIAQLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       381 -----------------------------------------~~~~-------~~~~~ll~~~L~~dP~~Rps~~~~~~~l  412 (457)
                                                               +.++       ..+.+||.+||..||++|.+    +.|+
T Consensus       668 HFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit----~nqA  743 (752)
T KOG0670|consen  668 HFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRIT----VNQA  743 (752)
T ss_pred             hcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCC----HHHH
Confidence                                                     0011       14789999999999999999    9999


Q ss_pred             hcCCCCCC
Q 012762          413 KRHQFFNG  420 (457)
Q Consensus       413 l~hp~f~~  420 (457)
                      |+||||..
T Consensus       744 L~HpFi~~  751 (752)
T KOG0670|consen  744 LKHPFITE  751 (752)
T ss_pred             hcCCcccC
Confidence            99999974

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=3.8e-39  Score=308.89  Aligned_cols=255  Identities=25%  Similarity=0.374  Sum_probs=207.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-------hhhhHHHHHHHHHHHHHH-cCCCCCceEEEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-------VSRNKESRARIEREILEM-LDHPFLPTLYAT  154 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-------~~~~~~~~~~~E~~il~~-l~H~nIv~l~~~  154 (457)
                      +|++.+.||+|+||.||+|.++.   ..++.+|+|.+.....       ........+..|+.++.+ ++|+||++++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~---~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~   77 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKN---NGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKT   77 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcC---CCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEee
Confidence            47889999999999999999863   2567899998864321       122234456678887765 799999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEec
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      +..++..|+||||+++++|.+++...  ....+++..++.++.|++.||.|||+ .+++|+||+|+|||++.++.++|+|
T Consensus        78 ~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          78 FLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             EccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEec
Confidence            99999999999999999998887542  23568999999999999999999996 7899999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++.......                                                                     
T Consensus       158 fg~~~~~~~~~---------------------------------------------------------------------  168 (269)
T cd08528         158 FGLAKQKQPES---------------------------------------------------------------------  168 (269)
T ss_pred             ccceeeccccc---------------------------------------------------------------------
Confidence            99975432110                                                                     


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                        ......|+..|++||++.+..++.++||||||+++|+|++|+.||...........+............++..+.+++
T Consensus       169 --~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  246 (269)
T cd08528         169 --KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMYSEDVTDVI  246 (269)
T ss_pred             --ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccCCHHHHHHH
Confidence              011235889999999999888999999999999999999999999877666666666555544333335788999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+||+.||++||+    +.|+..+
T Consensus       247 ~~cl~~~p~~Rp~----~~e~~~~  266 (269)
T cd08528         247 TSCLTPDAEARPD----IIQVSAM  266 (269)
T ss_pred             HHHCCCCCccCCC----HHHHHHH
Confidence            9999999999999    7777543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-41  Score=304.97  Aligned_cols=266  Identities=24%  Similarity=0.356  Sum_probs=214.6

Q ss_pred             CCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH-cCCCCCceE
Q 012762           73 NNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM-LDHPFLPTL  151 (457)
Q Consensus        73 ~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~-l~H~nIv~l  151 (457)
                      ....+.+..++.+-+..||.|+||+|++-.++    ..|+..|||.++....  .....+++.|.+...+ -+.||||++
T Consensus        55 ~~~~~~F~~~~Lqdlg~iG~G~fG~V~KM~hk----~sg~~mAVKrIr~~n~--~keq~rll~e~d~~mks~~cp~IVkf  128 (361)
T KOG1006|consen   55 DAHLHTFTSDNLQDLGEIGNGAFGTVNKMLHK----PSGKLMAVKRIRSNNI--EKEQKRLLMEHDTVMKSSNCPNIVKF  128 (361)
T ss_pred             cccccccccchHHHHHHhcCCcchhhhhhhcC----ccCcEEEEEEeeeccc--hHHHHHHHHHHHHHHhhcCCcHHHHH
Confidence            34456778888999999999999999987776    6899999999977644  4456777788886544 589999999


Q ss_pred             EEEEEcCCcEEEEEeecCCCChHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceeecCCCCCeEEccCCCE
Q 012762          152 YATLDCPRWSCLLTEFCPGGDLHVLRQR---QPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~~~~sL~~~~~~---~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~iiHrDIKp~NIll~~~~~v  227 (457)
                      ||+.-.++..+|.||+| ..+|..+-++   -....++|..+-.+..-.+.||.||- ..+||||||||+||||+..|.|
T Consensus       129 yGa~F~EGdcWiCMELM-d~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~v  207 (361)
T KOG1006|consen  129 YGALFSEGDCWICMELM-DISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDV  207 (361)
T ss_pred             hhhhhcCCceeeeHHHH-hhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCE
Confidence            99998889999999999 7788654433   23467999999999999999999999 4689999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||||||++..+.++-...                                                              
T Consensus       208 KLCDFGIcGqLv~SiAkT--------------------------------------------------------------  225 (361)
T KOG1006|consen  208 KLCDFGICGQLVDSIAKT--------------------------------------------------------------  225 (361)
T ss_pred             eeecccchHhHHHHHHhh--------------------------------------------------------------
Confidence            999999976554321100                                                              


Q ss_pred             ccCCccccccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCC----C
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPK----E  380 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~----~  380 (457)
                               .-+|...|||||.+..  .+|+.++||||||++|||+.||..||.+.+.. +.+..++.+..+.-.    .
T Consensus       226 ---------~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~  296 (361)
T KOG1006|consen  226 ---------VDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKEC  296 (361)
T ss_pred             ---------hccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccc
Confidence                     1158999999999964  35899999999999999999999999987653 334444444332211    1


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ...+..++.+|..||..|-++||.    ..+|+++||++-
T Consensus       297 ~~~s~~~~~fintCl~Kd~~~Rpk----y~~Lk~~~fyr~  332 (361)
T KOG1006|consen  297 VHYSFSMVRFINTCLIKDRSDRPK----YDDLKKFPFYRM  332 (361)
T ss_pred             cccCHHHHHHHHHHhhcccccCcc----hhhhhcCchhhh
Confidence            346788999999999999999999    999999999975

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=9.6e-39  Score=306.37  Aligned_cols=249  Identities=17%  Similarity=0.267  Sum_probs=191.6

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeec
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC  168 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~  168 (457)
                      +||+|+||+||+|.+...  .....+++|.+....  .......+.+|+++++.++||||+++++.+......|+||||+
T Consensus         2 ~lg~G~~g~v~~~~~~~~--~~~~~~~~k~~~~~~--~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~   77 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTD--TGVARVVVKELKANA--SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYC   77 (268)
T ss_pred             cCCCCcCceEEEEEEEcC--CCcceEEEEEecCCC--ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecC
Confidence            689999999999976421  123456777765432  1234567888999999999999999999999999999999999


Q ss_pred             CCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccc
Q 012762          169 PGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ  246 (457)
Q Consensus       169 ~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~  246 (457)
                      ++++|..++....  ...+++..++.++.||+.||+|||+.+++||||||+|||++.++.++|+|||++........   
T Consensus        78 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~---  154 (268)
T cd05086          78 ELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDY---  154 (268)
T ss_pred             CCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchh---
Confidence            9999998887642  23467778889999999999999999999999999999999999999999998643211000   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccC
Q 012762          247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA  326 (457)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  326 (457)
                                                                                       ........|+..|+|
T Consensus       155 -----------------------------------------------------------------~~~~~~~~~~~~y~a  169 (268)
T cd05086         155 -----------------------------------------------------------------IETEDDKCVPLRWLA  169 (268)
T ss_pred             -----------------------------------------------------------------hhcccCCcCcccccC
Confidence                                                                             000012358889999


Q ss_pred             chhhcC-------CCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc-CCC---CCCCCChHHHHHHHHH
Q 012762          327 PEIISG-------EGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL-EFP---KEPSVPGPAKDLIAQL  394 (457)
Q Consensus       327 PE~l~~-------~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ll~~~  394 (457)
                      ||++..       ..++.++|||||||++|||++ |..||........+..++.... ..+   ....+++.+.+++..|
T Consensus       170 PE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  249 (268)
T cd05086         170 PELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFC  249 (268)
T ss_pred             chhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHH
Confidence            999853       235779999999999999996 6789987776666665544322 111   1234678899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      | .+|++||+    +++|++
T Consensus       250 ~-~~P~~Rp~----~~~i~~  264 (268)
T cd05086         250 W-LSPEKRAT----AEEVHR  264 (268)
T ss_pred             h-hCcccCCC----HHHHHH
Confidence            9 68999999    888865

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-41  Score=304.37  Aligned_cols=263  Identities=27%  Similarity=0.361  Sum_probs=207.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc---
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC---  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~---  157 (457)
                      .+.|.-+.+||+|.||.||+|+.+    ++|+.||+|++-.... ....-....+|++||..|+|+|++.++..|..   
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~----n~~kkvalkkvlmene-KeGfpitalreikiL~~lkHenv~nliEic~tk~T   90 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSK----NTGKKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKAT   90 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhc----CccchhHHHHHHHhcc-ccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccC
Confidence            356777889999999999998876    5788899887643211 11223445679999999999999999887643   


Q ss_pred             -----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          158 -----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       158 -----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                           ...+||||.+| ..+|..++... .-+++..++..++.+++.||.|+|...|+|||+|++|+||+.+|.+||+||
T Consensus        91 p~~r~r~t~ylVf~~c-ehDLaGlLsn~-~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADF  168 (376)
T KOG0669|consen   91 PTNRDRATFYLVFDFC-EHDLAGLLSNR-KVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADF  168 (376)
T ss_pred             CcccccceeeeeHHHh-hhhHHHHhcCc-cccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeecc
Confidence                 23479999999 66888777653 367999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++.+..+....                                                                  .
T Consensus       169 Glar~fs~~~n~~------------------------------------------------------------------k  182 (376)
T KOG0669|consen  169 GLARAFSTSKNVV------------------------------------------------------------------K  182 (376)
T ss_pred             ccccceecccccC------------------------------------------------------------------C
Confidence            9987665332211                                                                  1


Q ss_pred             cccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC--CCCCC-------
Q 012762          313 VRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPS-------  382 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~-------  382 (457)
                      .+.+..+-|..|++||.+.|.. |+.+.|||..|||+.||++|.+.|.+.++...+..|..-...+  ..+++       
T Consensus       183 prytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~  262 (376)
T KOG0669|consen  183 PRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLY  262 (376)
T ss_pred             CCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHH
Confidence            1223446799999999999875 8999999999999999999999999988776655544321111  11111       


Q ss_pred             ------------------------CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          383 ------------------------VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       383 ------------------------~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                              -.+++.+|+.+||..||.+|+.    ++++|+|.||..
T Consensus       263 ~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~----ad~alnh~~F~k  320 (376)
T KOG0669|consen  263 QSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRID----ADQALNHDFFWK  320 (376)
T ss_pred             HhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcc----hHhhhchhhhhc
Confidence                                    1236889999999999999999    999999999975

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=6.5e-39  Score=307.78  Aligned_cols=257  Identities=20%  Similarity=0.294  Sum_probs=202.5

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC----
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR----  159 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~----  159 (457)
                      |++.+.||+|+||.||+|.++.. ..+++.||+|++.... ......+.+.+|+++|+.++||||+++++++....    
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~-~~~~~~~aiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   78 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSE-DGSFQKVAVKMLKADI-FSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGR   78 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeecc-CCCceEEEEEEecccc-CChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCc
Confidence            56788999999999999987642 2367899999986543 22334566788999999999999999999886532    


Q ss_pred             --cEEEEEeecCCCChHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQP----DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~----~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                        ..++++||+.+++|..++....    ...++...++.++.||+.||+|||+.||+||||||+||+++.++.+||+|||
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg  158 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFG  158 (273)
T ss_pred             ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccc
Confidence              2478999999999987764321    2357889999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.........                                                                    
T Consensus       159 ~~~~~~~~~~~~--------------------------------------------------------------------  170 (273)
T cd05074         159 LSKKIYSGDYYR--------------------------------------------------------------------  170 (273)
T ss_pred             ccccccCCccee--------------------------------------------------------------------
Confidence            876442111000                                                                    


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ......++..|++||.+.+..++.++|||||||++|||++ |+.||.+.........+.... ........+..+.+++.
T Consensus       171 ~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~  249 (273)
T cd05074         171 QGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGN-RLKQPPDCLEDVYELMC  249 (273)
T ss_pred             cCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCC-cCCCCCCCCHHHHHHHH
Confidence            0001235678999999998889999999999999999998 999998876665555544332 23333457789999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcC
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +||..+|++||+    +.+++++
T Consensus       250 ~~l~~~p~~Rps----~~~~~~~  268 (273)
T cd05074         250 QCWSPEPKCRPS----FQHLRDQ  268 (273)
T ss_pred             HHcCCChhhCcC----HHHHHHH
Confidence            999999999999    8887653

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-39  Score=330.59  Aligned_cols=260  Identities=26%  Similarity=0.424  Sum_probs=218.9

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~  157 (457)
                      ...+-|.+.++||.|.+|.||++..+    ++++.+|+|++...    .+..++++.|.+||+.+ +|||++.++++|..
T Consensus        16 dp~d~~ei~evig~Gtygkv~k~k~~----~~~~~aa~kI~~~~----~d~deEiE~eynil~~~~~hpnv~~fyg~~~k   87 (953)
T KOG0587|consen   16 DPADIFEIIEVIGNGTYGKVYKGRHV----KTGQLAAIKIMDPT----EDEEEEIELEYNMLKKYSHHPNVATFYGAFIK   87 (953)
T ss_pred             CCCCccEEEEEEeeccceeEEEEeee----ecCceeeeEeecCC----ccccHHHHHHHHHHHhccCCCCcceEEEEEEE
Confidence            34456999999999999999999877    58889999998654    24556677789999887 79999999999853


Q ss_pred             -----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          158 -----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       158 -----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                           ++.++||||||.||+..++++...+.++.|..+.-|++.++.||.+||.+.+||||||-.|||++.+|.|||+||
T Consensus        88 ~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDF  167 (953)
T KOG0587|consen   88 KDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDF  167 (953)
T ss_pred             ecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeee
Confidence                 467999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |.+..+..                                                                      ..
T Consensus       168 GvSaQlds----------------------------------------------------------------------T~  177 (953)
T KOG0587|consen  168 GVSAQLDS----------------------------------------------------------------------TV  177 (953)
T ss_pred             eeeeeeec----------------------------------------------------------------------cc
Confidence            99755431                                                                      12


Q ss_pred             cccccccCCCCccCchhhcCC-----CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-ccCCCCCCCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-ALEFPKEPSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~-----~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  386 (457)
                      .+..+++||+.|||||++...     .|+.++|+||||++..||.-|.+|+-++.....+..|... ...+..+..++..
T Consensus       178 grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~  257 (953)
T KOG0587|consen  178 GRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKK  257 (953)
T ss_pred             ccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHH
Confidence            334577899999999999754     3788999999999999999999999887655444433222 1122234567889


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.++|..||..|-++||+    ..++|+|||.+.
T Consensus       258 FndFIs~cL~Kd~e~RP~----~~~ll~hpFi~e  287 (953)
T KOG0587|consen  258 FNDFISTCLVKDYEQRPS----TEELLKHPFITE  287 (953)
T ss_pred             HHHHHHHHHhhccccCcc----hhhhccCCcccc
Confidence            999999999999999999    999999999974

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-40  Score=312.14  Aligned_cols=277  Identities=27%  Similarity=0.401  Sum_probs=223.1

Q ss_pred             CCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh----hhhHHHHHHHHHHHHHHcCCC
Q 012762           71 NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV----SRNKESRARIEREILEMLDHP  146 (457)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~----~~~~~~~~~~E~~il~~l~H~  146 (457)
                      .......+...++|-++..||.|+|+.||+|.+.    ..++.||||+-...+..    ..+..+...+|.+|-+.|+||
T Consensus       452 nSQFkDHptLn~RYLlLhLLGrGGFSEVyKAFDl----~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHp  527 (775)
T KOG1151|consen  452 NSQFKDHPTLNDRYLLLHLLGRGGFSEVYKAFDL----TEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHP  527 (775)
T ss_pred             hhhhccCcchHHHHHHHHHhccccHHHHHHhccc----chhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcc
Confidence            3444555666688999999999999999988765    57889999986543322    223346677899999999999


Q ss_pred             CCceEEEEEE-cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEcc
Q 012762          147 FLPTLYATLD-CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRS  223 (457)
Q Consensus       147 nIv~l~~~~~-~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~  223 (457)
                      .||++|++|. +.+..|-|+|||+|.+|.-+++.+  +.+++.+++.|+-||+.||.||.+..  |||=||||.||||-.
T Consensus       528 RIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~  605 (775)
T KOG1151|consen  528 RIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVN  605 (775)
T ss_pred             eeeeeeeeeeeccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEec
Confidence            9999999995 456789999999999999888886  77999999999999999999999774  999999999999953


Q ss_pred             ---CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          224 ---DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       224 ---~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                         .|.+||+|||+++.+++........                                                    
T Consensus       606 GtacGeIKITDFGLSKIMdddSy~~vdG----------------------------------------------------  633 (775)
T KOG1151|consen  606 GTACGEIKITDFGLSKIMDDDSYNSVDG----------------------------------------------------  633 (775)
T ss_pred             CcccceeEeeecchhhhccCCccCcccc----------------------------------------------------
Confidence               4789999999999887543221100                                                    


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcCC----CCCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHH---HHh
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLAN---VVA  372 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~----~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~---~~~  372 (457)
                                 -.-+....||.+|++||++.-.    ..+.++||||+|||+|..++|+.||...-... ++..   +..
T Consensus       634 -----------meLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkA  702 (775)
T KOG1151|consen  634 -----------MELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKA  702 (775)
T ss_pred             -----------eeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcc
Confidence                       0011234699999999998532    26889999999999999999999997643332 2211   224


Q ss_pred             cccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       373 ~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ....||..+.++.+++++|++||++--++|..    +.+|-.||||..
T Consensus       703 tEVqFP~KPvVsseAkaFIRRCLaYRKeDR~D----V~qLA~dpyllP  746 (775)
T KOG1151|consen  703 TEVQFPPKPVVSSEAKAFIRRCLAYRKEDRID----VQQLACDPYLLP  746 (775)
T ss_pred             eeccCCCCCccCHHHHHHHHHHHHhhhhhhhh----HHHHccCccccc
Confidence            57788888899999999999999999999999    999999999986

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=7.4e-38  Score=328.26  Aligned_cols=268  Identities=17%  Similarity=0.208  Sum_probs=182.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE--
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT--  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~--  154 (457)
                      ..+..++|.+.++||+|+||+||+|++.......+..||+|.+.....     ......|  .++...+.+++.++..  
T Consensus       127 ~~~~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~-----~e~~~~e--~l~~~~~~~~~~~~~~~~  199 (566)
T PLN03225        127 PSFKKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA-----VEIWMNE--RVRRACPNSCADFVYGFL  199 (566)
T ss_pred             CCCccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch-----hHHHHHH--HHHhhchhhHHHHHHhhh
Confidence            445678999999999999999999998742222378999998754311     1111111  1222223333322221  


Q ss_pred             ----EEcCCcEEEEEeecCCCChHHHHHhCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 012762          155 ----LDCPRWSCLLTEFCPGGDLHVLRQRQPDK------------------RFHESAVRFYASEVVVALEFLHMMGIIYR  212 (457)
Q Consensus       155 ----~~~~~~~~lV~E~~~~~sL~~~~~~~~~~------------------~~~~~~~~~i~~qi~~~L~yLH~~~iiHr  212 (457)
                          ...+..++|||||+.+++|.+++......                  ...+..+..++.||+.||.|||++||+||
T Consensus       200 ~~~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHR  279 (566)
T PLN03225        200 EPVSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHR  279 (566)
T ss_pred             cccccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeC
Confidence                24556789999999999999888753211                  11234567899999999999999999999


Q ss_pred             cCCCCCeEEcc-CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcc
Q 012762          213 DLKPENVLVRS-DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK  291 (457)
Q Consensus       213 DIKp~NIll~~-~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (457)
                      ||||+|||++. ++.+||+|||+++.......                                                
T Consensus       280 DLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~------------------------------------------------  311 (566)
T PLN03225        280 DVKPQNIIFSEGSGSFKIIDLGAAADLRVGIN------------------------------------------------  311 (566)
T ss_pred             cCCHHHEEEeCCCCcEEEEeCCCccccccccc------------------------------------------------
Confidence            99999999986 57999999999864421110                                                


Q ss_pred             hhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC----------------------CCCccchhhhhhHHHH
Q 012762          292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE----------------------GHGNAVDWWTLGIFIF  349 (457)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~----------------------~~~~~sDiwSlG~il~  349 (457)
                                           .....++||+.|||||.+...                      .++.++|||||||+||
T Consensus       312 ---------------------~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~  370 (566)
T PLN03225        312 ---------------------YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFL  370 (566)
T ss_pred             ---------------------cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHH
Confidence                                 001134689999999976432                      2345679999999999


Q ss_pred             HHhcCCCCCCCCChHHHHHHHHhc-ccCC--------C-C----------CCCCChHHHHHHHHHhhhCCCCCCCCCcCh
Q 012762          350 ELFYGTTPFKGIDHELTLANVVAR-ALEF--------P-K----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGA  409 (457)
Q Consensus       350 elltG~~Pf~~~~~~~~~~~~~~~-~~~~--------~-~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~  409 (457)
                      ||+++..++..  ....+..++.. ...+        + .          ........++||.+||+.||++||+    +
T Consensus       371 el~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~t----a  444 (566)
T PLN03225        371 QMAFPNLRSDS--NLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRIS----A  444 (566)
T ss_pred             HHHhCcCCCch--HHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCC----H
Confidence            99997776543  22122211111 1000        0 0          0011234568999999999999999    9


Q ss_pred             HHHhcCCCCCCCCchhh
Q 012762          410 TAIKRHQFFNGVNWALL  426 (457)
Q Consensus       410 ~~ll~hp~f~~~~~~~~  426 (457)
                      .++|+||||+..++..+
T Consensus       445 ~e~L~Hpff~~~~~~~~  461 (566)
T PLN03225        445 KAALAHPYFDREGLLGL  461 (566)
T ss_pred             HHHhCCcCcCCCCcccc
Confidence            99999999999888644

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=5e-39  Score=324.11  Aligned_cols=243  Identities=30%  Similarity=0.473  Sum_probs=193.7

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC----
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR----  159 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~----  159 (457)
                      +...+.||+|+||.||+++++    .+|+.||||.+++..  .....++..+|++||++|+|+|||+++++-+...    
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnk----etG~~vAvK~~~~~~--~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~   88 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNK----ETGRLVAVKTFNKES--SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLV   88 (732)
T ss_pred             eeehhhhcCCccceeeeeccc----ccccchhHHhhhhhc--ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcc
Confidence            555678999999999999876    599999999997753  3456678888999999999999999999865443    


Q ss_pred             --cEEEEEeecCCCChHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc--cCC--CEEEecc
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQ-PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR--SDG--HIMLTDF  232 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~--~~~--~vkl~DF  232 (457)
                        .-.+|||||.||+|+..+.+- +..++++.+++.++..++.||.|||++|||||||||.||++-  .+|  .-||+||
T Consensus        89 ~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDf  168 (732)
T KOG4250|consen   89 TRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDF  168 (732)
T ss_pred             cccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecc
Confidence              457999999999999888763 346899999999999999999999999999999999999985  334  4699999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |.|+..++..                                                                      
T Consensus       169 G~Arel~d~s----------------------------------------------------------------------  178 (732)
T KOG4250|consen  169 GAARELDDNS----------------------------------------------------------------------  178 (732)
T ss_pred             cccccCCCCC----------------------------------------------------------------------
Confidence            9998776432                                                                      


Q ss_pred             cccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCC----hHHHHHHHHhccc------------
Q 012762          313 VRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGID----HELTLANVVARAL------------  375 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~----~~~~~~~~~~~~~------------  375 (457)
                       ...+++||..|.+||.+.. ..|+..+|.|||||++|+++||..||....    +.++...+..+..            
T Consensus       179 -~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eN  257 (732)
T KOG4250|consen  179 -LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEEN  257 (732)
T ss_pred             -eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeecccC
Confidence             2236789999999999985 778999999999999999999999995432    2334444433211            


Q ss_pred             -------CCCCCCCCCh----HHHHHHHHHhhhCCCCCC
Q 012762          376 -------EFPKEPSVPG----PAKDLIAQLLVKDPTRRM  403 (457)
Q Consensus       376 -------~~~~~~~~~~----~~~~ll~~~L~~dP~~Rp  403 (457)
                             .+|.+..++.    .+-..+..||..||.+|.
T Consensus       258 gpv~~s~~lP~p~~Ls~~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  258 GPVEWSSTLPQPNHLSRGLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             CceeeeccCCCcccccHHHHhhhhHHHHHHHhhhHHHhC
Confidence                   1111112222    345788999999999998

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=7.7e-37  Score=313.43  Aligned_cols=270  Identities=17%  Similarity=0.231  Sum_probs=193.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc------------CCCCCceEEEEEeehhhhhh-----------hhHHHHH
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK------------SSNNGCFFAAKVMDKRELVS-----------RNKESRA  133 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~------------~~~~~~~vAvK~~~~~~~~~-----------~~~~~~~  133 (457)
                      .....++|.+.++||+|+||+||+|.+...            ....++.||||.+.......           .......
T Consensus       140 ~r~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~  219 (507)
T PLN03224        140 SRWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETG  219 (507)
T ss_pred             CCccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchh
Confidence            345678999999999999999999975321            22356789999986432110           0111223


Q ss_pred             HHHHHHHHHcCCCCC-----ceEEEEEEc--------CCcEEEEEeecCCCChHHHHHhCC-------------------
Q 012762          134 RIEREILEMLDHPFL-----PTLYATLDC--------PRWSCLLTEFCPGGDLHVLRQRQP-------------------  181 (457)
Q Consensus       134 ~~E~~il~~l~H~nI-----v~l~~~~~~--------~~~~~lV~E~~~~~sL~~~~~~~~-------------------  181 (457)
                      ..|+.++.+++|.++     ++++++|..        .+..+|||||+.+++|.++++...                   
T Consensus       220 ~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~  299 (507)
T PLN03224        220 MVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPD  299 (507)
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhh
Confidence            446777777776654     667777643        346799999999999998886421                   


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCC
Q 012762          182 ---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ  258 (457)
Q Consensus       182 ---~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~  258 (457)
                         ...+++..++.++.|++.+|.|||+.+|+||||||+|||++.++.+||+|||++..........             
T Consensus       300 ~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~-------------  366 (507)
T PLN03224        300 NMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFN-------------  366 (507)
T ss_pred             hcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccC-------------
Confidence               1124567788999999999999999999999999999999999999999999975432110000             


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC----
Q 012762          259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----  334 (457)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~----  334 (457)
                                                                              ...-.+|+.|+|||.+....    
T Consensus       367 --------------------------------------------------------~~~g~~tp~Y~aPE~l~~~~~~~~  390 (507)
T PLN03224        367 --------------------------------------------------------PLYGMLDPRYSPPEELVMPQSCPR  390 (507)
T ss_pred             --------------------------------------------------------ccccCCCcceeChhhhcCCCCCCc
Confidence                                                                    00113588999999986432    


Q ss_pred             ----------------CC--ccchhhhhhHHHHHHhcCCC-CCCCCChH-----------HHHHHHHhcccCCCCCCCCC
Q 012762          335 ----------------HG--NAVDWWTLGIFIFELFYGTT-PFKGIDHE-----------LTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       335 ----------------~~--~~sDiwSlG~il~elltG~~-Pf~~~~~~-----------~~~~~~~~~~~~~~~~~~~~  384 (457)
                                      |+  .+.||||+||++|+|++|.. ||......           .....+....+.++.....+
T Consensus       391 ~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s  470 (507)
T PLN03224        391 APAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNK  470 (507)
T ss_pred             cchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccC
Confidence                            11  24799999999999999985 77542211           11112222344555556678


Q ss_pred             hHHHHHHHHHhhhCC---CCCCCCCcChHHHhcCCCCC
Q 012762          385 GPAKDLIAQLLVKDP---TRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP---~~Rps~~~~~~~ll~hp~f~  419 (457)
                      +..++|+.+||..+|   .+|+|    ++|+|+||||.
T Consensus       471 ~~~~dLi~~LL~~~~~~~~~RlS----a~eaL~Hp~f~  504 (507)
T PLN03224        471 EAGWDLACKLITKRDQANRGRLS----VGQALSHRFFL  504 (507)
T ss_pred             hHHHHHHHHHhccCCCCcccCCC----HHHHhCCCCcC
Confidence            899999999999876   68999    99999999996

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=6.7e-38  Score=276.88  Aligned_cols=254  Identities=24%  Similarity=0.395  Sum_probs=204.8

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~  158 (457)
                      ..++|++.+++|+|.|+.||.|...    .+++.++||+++.      -+.+.+.+|+.||+.|. ||||++++++..+.
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~----~~~eK~ViKiLKP------VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp  105 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINI----TNNEKCVIKILKP------VKKKKIKREIKILQNLRGGPNIIKLLDIVKDP  105 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhccccc----CCCceEEEeeech------HHHHHHHHHHHHHHhccCCCCeeehhhhhcCc
Confidence            5679999999999999999998865    4788899999965      35567888999999995 99999999998765


Q ss_pred             --CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCCC
Q 012762          159 --RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLS  235 (457)
Q Consensus       159 --~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~s  235 (457)
                        ....||+||+++.+...+..     .++...++.++.|++.||.|+|++||+|||+||.|++|+.. ..++|+|+|+|
T Consensus       106 ~SktpaLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLA  180 (338)
T KOG0668|consen  106 ESKTPSLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLA  180 (338)
T ss_pred             cccCchhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchH
Confidence              45689999999988876643     48888999999999999999999999999999999999965 57999999999


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ....+....                                                                       
T Consensus       181 EFYHp~~eY-----------------------------------------------------------------------  189 (338)
T KOG0668|consen  181 EFYHPGKEY-----------------------------------------------------------------------  189 (338)
T ss_pred             hhcCCCcee-----------------------------------------------------------------------
Confidence            776543322                                                                       


Q ss_pred             ccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCC-CCChHHHHHHHHhc-------------ccCCCC-
Q 012762          316 MSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFK-GIDHELTLANVVAR-------------ALEFPK-  379 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~-~~~~~~~~~~~~~~-------------~~~~~~-  379 (457)
                      ...+.+..|--||.+...+ |+..-|+|||||+|..|+..+.||. |.++.+.+.+|..-             .+.++. 
T Consensus       190 nVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~  269 (338)
T KOG0668|consen  190 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQ  269 (338)
T ss_pred             eeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChh
Confidence            1235677889999998765 8999999999999999999888874 54544443333210             111110 


Q ss_pred             --------------------C-CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          380 --------------------E-PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       380 --------------------~-~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                          . .-+++++.||+.++|..|-.+|+|    +.|++.||||..+.-
T Consensus       270 ~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlT----akEam~HpyF~~~~~  330 (338)
T KOG0668|consen  270 FEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLT----AKEAMAHPYFAPVRE  330 (338)
T ss_pred             HhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccc----hHHHhcCchHHHHHH
Confidence                                0 123578999999999999999999    999999999987543

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=2.6e-36  Score=282.76  Aligned_cols=242  Identities=41%  Similarity=0.699  Sum_probs=200.6

Q ss_pred             CcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCCh
Q 012762           94 DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL  173 (457)
Q Consensus        94 ~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL  173 (457)
                      +||.||+|.+.    .+++.+|+|++........  ...+..|++++++++|+||+++++++......+++|||+.+++|
T Consensus         1 ~~g~v~~~~~~----~~~~~~~~k~~~~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L   74 (244)
T smart00220        1 SFGKVYLARDK----KTGKLVAIKVIKKEKIKKK--RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDL   74 (244)
T ss_pred             CceEEEEEEEC----CCCcEEEEEEecccccccH--HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCH
Confidence            58999999986    3688999999976533221  56788899999999999999999999998999999999999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCC
Q 012762          174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP  253 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~  253 (457)
                      ..++...  ..+++..+..++.+++.+|.|||+.+++|+||+|.||+++.++.++|+|||++.......           
T Consensus        75 ~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-----------  141 (244)
T smart00220       75 FDLLKKR--GRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-----------  141 (244)
T ss_pred             HHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc-----------
Confidence            9988775  338999999999999999999999999999999999999999999999999976543211           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC
Q 012762          254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE  333 (457)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~  333 (457)
                                                                                  ......|+..|++||.+.+.
T Consensus       142 ------------------------------------------------------------~~~~~~~~~~~~~pE~~~~~  161 (244)
T smart00220      142 ------------------------------------------------------------LLTTFVGTPEYMAPEVLLGK  161 (244)
T ss_pred             ------------------------------------------------------------ccccccCCcCCCCHHHHccC
Confidence                                                                        00123588899999999988


Q ss_pred             CCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHhcccCCCCCCC-CChHHHHHHHHHhhhCCCCCCCCCcChHH
Q 012762          334 GHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATA  411 (457)
Q Consensus       334 ~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~L~~dP~~Rps~~~~~~~  411 (457)
                      .++.++|||+||+++|+|++|..||.... .................... ++.++.+++.+||..||++||+    +.+
T Consensus       162 ~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~----~~~  237 (244)
T smart00220      162 GYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLT----AEE  237 (244)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccC----HHH
Confidence            88999999999999999999999998733 33333333333322222222 7889999999999999999999    999


Q ss_pred             HhcCCCC
Q 012762          412 IKRHQFF  418 (457)
Q Consensus       412 ll~hp~f  418 (457)
                      +++||||
T Consensus       238 ~~~~~~~  244 (244)
T smart00220      238 ALQHPFF  244 (244)
T ss_pred             HhhCCCC
Confidence            9999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-36  Score=318.80  Aligned_cols=260  Identities=22%  Similarity=0.317  Sum_probs=217.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCC---CCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSN---NGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTL  151 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l  151 (457)
                      .+.+..++..+.+.||+|.||.||+|..+.....   ....||||.++....  ....+.+..|+++|+.+ .|+||+.+
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~--~~~~~~~~~El~~m~~~g~H~niv~l  367 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENAS--SSEKKDLMSELNVLKELGKHPNIVNL  367 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccC--cHHHHHHHHHHHHHHHhcCCcchhhh
Confidence            5677777788888999999999999987654433   267899999876533  35677888899999998 59999999


Q ss_pred             EEEEEcCCcEEEEEeecCCCChHHHHHhCC------C--------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQP------D--------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~------~--------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      ++++...+.+++|+||+..|+|..++....      .        ..++..+...++.||+.|++||++.++|||||...
T Consensus       368 lG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaR  447 (609)
T KOG0200|consen  368 LGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAAR  447 (609)
T ss_pred             eeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhh
Confidence            999999999999999999999999988753      0        13888999999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||+..+..+||+|||+++...+.......                                                  
T Consensus       448 NVLi~~~~~~kIaDFGlar~~~~~~~y~~~--------------------------------------------------  477 (609)
T KOG0200|consen  448 NVLITKNKVIKIADFGLARDHYNKDYYRTK--------------------------------------------------  477 (609)
T ss_pred             hEEecCCCEEEEccccceeccCCCCceEec--------------------------------------------------
Confidence            999999999999999999865433222100                                                  


Q ss_pred             CCCCCCCcccccCCccccccccC--CCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCC-hHHHHHHHHhc
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVG--THEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGID-HELTLANVVAR  373 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g--t~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~-~~~~~~~~~~~  373 (457)
                                         .-.|  ...|||||.+....|+.++||||||++|||+++ |..||.+.. ..+. ...+..
T Consensus       478 -------------------~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l-~~~l~~  537 (609)
T KOG0200|consen  478 -------------------SSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEEL-LEFLKE  537 (609)
T ss_pred             -------------------CCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHH-HHHHhc
Confidence                               0012  335999999999889999999999999999997 999999865 4444 447777


Q ss_pred             ccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       374 ~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      ..++..+..+++++.++|+.||..+|++||++.+
T Consensus       538 G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~  571 (609)
T KOG0200|consen  538 GNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSE  571 (609)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHH
Confidence            7888888889999999999999999999999443

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-37  Score=285.62  Aligned_cols=255  Identities=27%  Similarity=0.423  Sum_probs=205.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR-  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~-  159 (457)
                      ..+|.-+..+|.|.- .|..|-+.    -.++.||+|.+... ........+..+|..++..++|+||++++.+|.-.. 
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~----v~~~~v~ikk~~~p-f~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~   89 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQ----VLGRPVAIKKLSRP-FQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKT   89 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchh----hccCceehhhhcCc-cccCccchhhhhhhhhhhhhcccceeeeeeccCcccc
Confidence            457888889999988 66655544    47888999988654 444556678888999999999999999999995443 


Q ss_pred             -----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          160 -----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       160 -----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                           ..|+|||++ ..+|...+..    .++-..+..++.|++.|++|||+.||+||||||+||++..++.+||.|||+
T Consensus        90 l~~~~e~y~v~e~m-~~nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~  164 (369)
T KOG0665|consen   90 LEEFQEVYLVMELM-DANLCQVILM----ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGL  164 (369)
T ss_pred             HHHHHhHHHHHHhh-hhHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchh
Confidence                 579999999 8899887774    377888999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++....                                                                       +.+
T Consensus       165 ar~e~~-----------------------------------------------------------------------~~~  173 (369)
T KOG0665|consen  165 ARTEDT-----------------------------------------------------------------------DFM  173 (369)
T ss_pred             hcccCc-----------------------------------------------------------------------ccc
Confidence            864321                                                                       123


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC------------------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------------------  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~------------------  376 (457)
                      .+.++.|..|+|||++.+..|...+||||+||++.||++|...|.|.+..+...+++.....                  
T Consensus       174 mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~  253 (369)
T KOG0665|consen  174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVE  253 (369)
T ss_pred             cCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhh
Confidence            44578999999999999999999999999999999999999999886654444333321110                  


Q ss_pred             -------------CCCC---------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          377 -------------FPKE---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       377 -------------~~~~---------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                   +|..         ..-...+++++.+||..||++|.+    ++++|+||||+  -|
T Consensus       254 ~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Ris----v~daL~HPY~~--vw  316 (369)
T KOG0665|consen  254 NRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRIS----VDDALRHPYIK--VW  316 (369)
T ss_pred             cChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhccc----HHHHhcCCeee--ee
Confidence                         0000         011235789999999999999999    99999999999  45

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-36  Score=287.39  Aligned_cols=248  Identities=24%  Similarity=0.342  Sum_probs=192.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH--HcCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE--MLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~--~l~H~nIv~l~~~~~~~~  159 (457)
                      .+.++.+.||+|.||.||+|.|+      |+.||||++...      .+..+.+|.+|.+  +|+|+||+.+++.-..+.
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr------Ge~VAVKiF~sr------dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~  278 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR------GEDVAVKIFSSR------DERSWFRETEIYQTVMLRHENILGFIAADNKDN  278 (513)
T ss_pred             heeEEEEEecCccccceeecccc------CCceEEEEeccc------chhhhhhHHHHHHHHHhccchhhhhhhccccCC
Confidence            57899999999999999999985      788999999653      4566777999875  469999999999765443


Q ss_pred             ----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeecCCCCCeEEccCCCE
Q 012762          160 ----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM--------GIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       160 ----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~--------~iiHrDIKp~NIll~~~~~v  227 (457)
                          .++||++|.+.|||++++.+   ..++.+....++.-++.||++||..        .|.|||||..|||+.++|.+
T Consensus       279 gs~TQLwLvTdYHe~GSL~DyL~r---~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C  355 (513)
T KOG2052|consen  279 GSWTQLWLVTDYHEHGSLYDYLNR---NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  355 (513)
T ss_pred             CceEEEEEeeecccCCcHHHHHhh---ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcE
Confidence                47999999999999999998   5789999999999999999999942        39999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      -|+|+|||......+...                                                              
T Consensus       356 ~IADLGLAv~h~~~t~~i--------------------------------------------------------------  373 (513)
T KOG2052|consen  356 CIADLGLAVRHDSDTDTI--------------------------------------------------------------  373 (513)
T ss_pred             EEeeceeeEEecccCCcc--------------------------------------------------------------
Confidence            999999987665433221                                                              


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCC------CccchhhhhhHHHHHHhc----------CCCCCCCCChH-----HH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGH------GNAVDWWTLGIFIFELFY----------GTTPFKGIDHE-----LT  366 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~------~~~sDiwSlG~il~ellt----------G~~Pf~~~~~~-----~~  366 (457)
                          +...+..+||..|||||++...-.      -..+||||||.|+||++.          -++||++....     ++
T Consensus       374 ----di~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeM  449 (513)
T KOG2052|consen  374 ----DIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEM  449 (513)
T ss_pred             ----cCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHH
Confidence                222335589999999999975421      237999999999999983          25788764322     22


Q ss_pred             HHHHHhcccCCCCCCCCC-----hHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          367 LANVVARALEFPKEPSVP-----GPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~-----~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..-+....++...+..+.     ..+-.||+.||..||.-|.+    +-.|.+
T Consensus       450 rkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRlt----ALriKK  498 (513)
T KOG2052|consen  450 RKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLT----ALRIKK  498 (513)
T ss_pred             hcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhH----HHHHHH
Confidence            222222333433333332     24668899999999999999    666654

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=311.02  Aligned_cols=249  Identities=27%  Similarity=0.364  Sum_probs=199.1

Q ss_pred             eEEEecccCcce-EEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcEEE
Q 012762           86 FVHRLGSGDIGS-VYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        86 ~~~~LG~G~fg~-Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~~l  163 (457)
                      -.+.+|.|+-|+ ||+|..      .|+.||||.+-.      .......+|+..|+.- +|||||++|+.=.+.+..||
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~y------e~R~VAVKrll~------e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YI  580 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVY------EGREVAVKRLLE------EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYI  580 (903)
T ss_pred             cHHHcccCCCCcEEEEEee------CCceehHHHHhh------HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEE
Confidence            346789999986 899986      678999999843      3456678899999887 69999999999999999999


Q ss_pred             EEeecCCCChHHHHHhC-CCCC-CCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CC--CEEEeccCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQ-PDKR-FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DG--HIMLTDFDLSL  236 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~-~~~~-~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~--~vkl~DFG~s~  236 (457)
                      ..|+| ..+|.++++.. .... ......+.++.|++.||++||+.+||||||||.||||..   ++  .++|+|||+++
T Consensus       581 alELC-~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK  659 (903)
T KOG1027|consen  581 ALELC-ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSK  659 (903)
T ss_pred             EehHh-hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccccc
Confidence            99999 89999999873 1111 111445778899999999999999999999999999986   34  68999999998


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .+......-.                                                                   +..
T Consensus       660 kl~~~~sS~~-------------------------------------------------------------------r~s  672 (903)
T KOG1027|consen  660 KLAGGKSSFS-------------------------------------------------------------------RLS  672 (903)
T ss_pred             ccCCCcchhh-------------------------------------------------------------------ccc
Confidence            8764332211                                                                   011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcC-CCCCCCCChHHHHHHHHhcccCCCCCCCC-ChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG-TTPFKGIDHELTLANVVARALEFPKEPSV-PGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~  394 (457)
                      +..||-+|+|||++....-..++|||||||++|+.++| .-||..  ..+...+|+.+.+.+..-... ..++.+||.+|
T Consensus       673 ~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd--~~~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~m  750 (903)
T KOG1027|consen  673 GGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGD--SLERQANILTGNYTLVHLEPLPDCEAKDLISRM  750 (903)
T ss_pred             CCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCc--hHHhhhhhhcCccceeeeccCchHHHHHHHHHh
Confidence            33599999999999988888899999999999999986 899975  344556777766554432111 12789999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |.+||..||+    |.++|.||||=+
T Consensus       751 l~~dP~~RPs----a~~VL~HPlFW~  772 (903)
T KOG1027|consen  751 LNPDPQLRPS----ATDVLNHPLFWD  772 (903)
T ss_pred             cCCCcccCCC----HHHHhCCCccCC
Confidence            9999999999    999999999953

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-37  Score=277.62  Aligned_cols=261  Identities=25%  Similarity=0.357  Sum_probs=204.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      .|.+--+.||.|+||+||.+++.    .+|+.||+|.+..- ...-...+++.+|+++|.-++|.|++..++..+-..  
T Consensus        53 ~Di~PDRPIGYGAFGVVWsVTDP----RdgrrvalkK~pnv-fq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~d  127 (449)
T KOG0664|consen   53 QDIQPDRPIGYGAFGVVWSVTDP----RSGKRVALKKMPNV-FQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPS  127 (449)
T ss_pred             ccCCCCCcccccceeEEEeccCC----CCccchhHhhcchH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCch
Confidence            45566689999999999988765    48999999998543 233345677888999999999999999988775442  


Q ss_pred             ---cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          160 ---WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       160 ---~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                         .+|+|+|++ -.+|..++-.-  ..++...++-++.||+.||.|||+.||+||||||.|+|++++..+||||||+++
T Consensus       128 fFqEiYV~TELm-QSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  128 FFQELYVLTELM-QSDLHKIIVSP--QALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HHHHHHHHHHHH-HhhhhheeccC--CCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEeccccccc
Confidence               468899998 67787666542  568888999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ..+.....                                                                     ..+
T Consensus       205 vee~d~~~---------------------------------------------------------------------hMT  215 (449)
T KOG0664|consen  205 TWDQRDRL---------------------------------------------------------------------NMT  215 (449)
T ss_pred             ccchhhhh---------------------------------------------------------------------hhH
Confidence            76532211                                                                     011


Q ss_pred             cccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh-----------------------
Q 012762          317 SFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA-----------------------  372 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~-----------------------  372 (457)
                      .-+-|..|+|||++.|.. |+.++||||.|||+.||+..+..|......+.+..|.+                       
T Consensus       216 qEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR  295 (449)
T KOG0664|consen  216 HEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLR  295 (449)
T ss_pred             HHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhc
Confidence            225688999999999876 89999999999999999999999987665444433332                       


Q ss_pred             cccCCCCC---------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          373 RALEFPKE---------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       373 ~~~~~~~~---------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      +..+.|..         ..-..+..+++.+||.+||.+|.+    .++.+.|+|...-+.
T Consensus       296 ~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris----~~~A~~~~~~~e~R~  351 (449)
T KOG0664|consen  296 AGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRIS----VEEALQHRYLEEGRL  351 (449)
T ss_pred             cCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCccccc----Hhhhcccccccccce
Confidence            11111211         111235789999999999999999    999999999977543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=4.8e-36  Score=286.79  Aligned_cols=302  Identities=21%  Similarity=0.286  Sum_probs=211.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      ...|.++.+||+|.|++||+|.+... ...++.||+|.+...     ....++..|+++|..+ .+.||+++.+++..++
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~-~~~~~~valk~i~~t-----s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQ-DTKRRYVALKAIYRT-----SSPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhh-ccccceEeeeecccc-----cCchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            35799999999999999999987642 236789999998543     4556788899999998 6999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCCCcCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLSLKG  238 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~s~~~  238 (457)
                      .+++||||+++....++...     ++..+++.+++.++.||.++|.+|||||||||.|+|.+.. +.-.|+|||++...
T Consensus       109 ~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~  183 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRY  183 (418)
T ss_pred             eeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHH
Confidence            99999999999999887754     6788999999999999999999999999999999999854 77899999998742


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ........-..       .+.+  ... .+......                ..+....-...|................
T Consensus       184 d~~~~~~~s~~-------~~~~--~~~-~~~g~~~~----------------~~~~~~~~~p~g~~~~~~~~r~~~~anr  237 (418)
T KOG1167|consen  184 DGYQQTEHSRS-------YSGR--HAT-PAMGKDVH----------------CQSVATASKPAGYYRRCNDGRPSERANR  237 (418)
T ss_pred             Hhhhhhhhhhh-------hhcc--cCC-ccccCccc----------------ccccccccCCCCceeccCCCccceeccc
Confidence            21110000000       0000  000 00000000                0000000001111111123334445567


Q ss_pred             cCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHH--------------hcc--cCC---
Q 012762          319 VGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVV--------------ARA--LEF---  377 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~--------------~~~--~~~---  377 (457)
                      .||++|+|||++.+.+ .+.++||||.|+|+..+++++.||....+. ..+..+.              .+.  +..   
T Consensus       238 AGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn  317 (418)
T KOG1167|consen  238 AGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSN  317 (418)
T ss_pred             CCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeecccc
Confidence            8999999999998765 688999999999999999999999653311 1111111              000  000   


Q ss_pred             -------------C-----------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          378 -------------P-----------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       378 -------------~-----------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                   .                 .....+..+.+|+.+||+.||.+|.+    ++++|+||||...+.
T Consensus       318 ~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRit----AEeALkHpFF~~~~~  389 (418)
T KOG1167|consen  318 IPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRIT----AEDALKHPFFDEADR  389 (418)
T ss_pred             ccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhccc----HHHHhcCcCCcchhh
Confidence                         0                 00112336889999999999999999    999999999997544

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-35  Score=259.33  Aligned_cols=220  Identities=28%  Similarity=0.390  Sum_probs=180.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      +..+..+++.-+..||+|++|.|-+-++.    .+|...|+|.+...  ......++..+|+.+..+. .+|.+|++||.
T Consensus        40 ~~eV~ad~L~~i~elGrGayG~vekmrh~----~sg~imAvKri~~t--vn~q~q~r~L~dldi~~r~~~CPf~V~FyGa  113 (282)
T KOG0984|consen   40 NFEVPADDLVGIEELGRGAYGVVEKMRHI----QSGTIMAVKRIRAT--VNSQEQKRLLMDLDIIMRTVDCPFTVHFYGA  113 (282)
T ss_pred             ccccchhhhhhhhhhcCCccchhhheeec----cCCeEEEEeeehhh--cChHHHHHHHHhhhhhccCCCCCeEEEeehh
Confidence            35677788888999999999999877776    69999999999654  2344566677788886664 79999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEec
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      ...+..+++.||.| ..+|..+...  ..++.++|..+-+++..++.||.|||++ .+||||+||.||||+.+|+||+||
T Consensus       114 ~~regdvwIcME~M-~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCD  192 (282)
T KOG0984|consen  114 LFREGDVWICMELM-DTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICD  192 (282)
T ss_pred             hhccccEEEeHHHh-hhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcc
Confidence            98899999999999 8888766543  3457899999999999999999999965 899999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++-.+.++-...                                                                  
T Consensus       193 FGIsG~L~dSiAkt------------------------------------------------------------------  206 (282)
T KOG0984|consen  193 FGISGYLVDSIAKT------------------------------------------------------------------  206 (282)
T ss_pred             cccceeehhhhHHH------------------------------------------------------------------
Confidence            99986654332110                                                                  


Q ss_pred             ccccccccCCCCccCchhhcC----CCCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHhc
Q 012762          312 DVRSMSFVGTHEYLAPEIISG----EGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVAR  373 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~----~~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~~  373 (457)
                           --.|...|||||.+..    ..|+.++||||||+++.||.+++.||.... ..+.+.+++..
T Consensus       207 -----~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVee  268 (282)
T KOG0984|consen  207 -----MDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEE  268 (282)
T ss_pred             -----HhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcC
Confidence                 0148889999999864    368999999999999999999999998654 44555555543

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-36  Score=294.76  Aligned_cols=205  Identities=30%  Similarity=0.456  Sum_probs=178.1

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHH-----HHHHHHHHHHHHcC---CCCCc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-----SRARIEREILEMLD---HPFLP  149 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~-----~~~~~E~~il~~l~---H~nIv  149 (457)
                      .-...+|..++.||+|+||.|++|.++.    +...|+||.+.|.++..+...     .-+-.|++||..|+   |+||+
T Consensus       557 ~~k~s~yttlq~lG~GAyGkV~lai~K~----n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIl  632 (772)
T KOG1152|consen  557 YKKFSDYTTLQPLGEGAYGKVNLAIHKE----NNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENIL  632 (772)
T ss_pred             ecccccceeeeeccccccceEEEeeecc----cceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchh
Confidence            3455789999999999999999999984    677899999988876544332     23445999999997   99999


Q ss_pred             eEEEEEEcCCcEEEEEeec-CCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          150 TLYATLDCPRWSCLLTEFC-PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       150 ~l~~~~~~~~~~~lV~E~~-~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      +++++|++++++||+||-- +|.+|++++..+  ..++|.+++.|++|++.|+++||++||||||||-+|+.++.+|.+|
T Consensus       633 KlLdfFEddd~yyl~te~hg~gIDLFd~IE~k--p~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~k  710 (772)
T KOG1152|consen  633 KLLDFFEDDDYYYLETEVHGEGIDLFDFIEFK--PRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVK  710 (772)
T ss_pred             hhhheeecCCeeEEEecCCCCCcchhhhhhcc--CccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEE
Confidence            9999999999999999975 567889999887  6799999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||.+....                                                                     
T Consensus       711 lidfgsaa~~k---------------------------------------------------------------------  721 (772)
T KOG1152|consen  711 LIDFGSAAYTK---------------------------------------------------------------------  721 (772)
T ss_pred             Eeeccchhhhc---------------------------------------------------------------------
Confidence            99999763221                                                                     


Q ss_pred             cCCccccccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCC
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKG  360 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~  360 (457)
                         ......|+||..|.|||++.|..| +..-|||+||++||-+++.+.||+.
T Consensus       722 ---sgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  722 ---SGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             ---CCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence               111225789999999999999997 8889999999999999999999974

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=287.23  Aligned_cols=245  Identities=24%  Similarity=0.351  Sum_probs=189.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH--cCCCCCceEEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--LDHPFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~--l~H~nIv~l~~~~~  156 (457)
                      +.....++++.||+|.||.||+|..      .++.||||++..+      ....+..|.+|...  ++|+||++++++-+
T Consensus       207 ~~l~pl~l~eli~~Grfg~V~KaqL------~~~~VAVKifp~~------~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ek  274 (534)
T KOG3653|consen  207 LELDPLQLLELIGRGRFGCVWKAQL------DNRLVAVKIFPEQ------EKQSFQNEKNIYSLPGMKHENILQFIGAEK  274 (534)
T ss_pred             ccCCchhhHHHhhcCccceeehhhc------cCceeEEEecCHH------HHHHHHhHHHHHhccCccchhHHHhhchhc
Confidence            3456788999999999999999987      4689999999653      56678889998776  58999999999875


Q ss_pred             cCC----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc---------CceeecCCCCCeEEcc
Q 012762          157 CPR----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---------GIIYRDLKPENVLVRS  223 (457)
Q Consensus       157 ~~~----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---------~iiHrDIKp~NIll~~  223 (457)
                      ...    .++||+||.+.|+|.++++.   ..+++.....++.-|++||+|||+-         .|+|||||..||||..
T Consensus       275 r~t~~~~eywLVt~fh~kGsL~dyL~~---ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~  351 (534)
T KOG3653|consen  275 RGTADRMEYWLVTEFHPKGSLCDYLKA---NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKN  351 (534)
T ss_pred             cCCccccceeEEeeeccCCcHHHHHHh---ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEcc
Confidence            544    78999999999999999998   5799999999999999999999953         4999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      |+++.|+|||+|..+.......                                                          
T Consensus       352 DlTccIaDFGLAl~~~p~~~~~----------------------------------------------------------  373 (534)
T KOG3653|consen  352 DLTCCIADFGLALRLEPGKPQG----------------------------------------------------------  373 (534)
T ss_pred             CCcEEeeccceeEEecCCCCCc----------------------------------------------------------
Confidence            9999999999997765221100                                                          


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCC-C-----ccchhhhhhHHHHHHhcCCC------------CCCC-----
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGH-G-----NAVDWWTLGIFIFELFYGTT------------PFKG-----  360 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~-~-----~~sDiwSlG~il~elltG~~------------Pf~~-----  360 (457)
                                ....-+||.+|||||++.|..- .     .+.||||+|.|||||++...            ||..     
T Consensus       374 ----------d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~h  443 (534)
T KOG3653|consen  374 ----------DTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNH  443 (534)
T ss_pred             ----------chhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCC
Confidence                      0112379999999999987642 2     37899999999999996432            3331     


Q ss_pred             CChHHHHHHHHhcccCCCCCCC-----CChHHHHHHHHHhhhCCCCCCCCC
Q 012762          361 IDHELTLANVVARALEFPKEPS-----VPGPAKDLIAQLLVKDPTRRMGSK  406 (457)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~L~~dP~~Rps~~  406 (457)
                      ..-+++...++....+...+..     -...+++.+..||..|++-|.|..
T Consensus       444 Pt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~  494 (534)
T KOG3653|consen  444 PTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAG  494 (534)
T ss_pred             CCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhH
Confidence            1223334444444333221111     123588999999999999999944

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=300.87  Aligned_cols=253  Identities=23%  Similarity=0.267  Sum_probs=211.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      ..+..++||.|+||+||+|.|......-+..||+|++...  .......++..|+-+|.+|+|||++++++++.... +.
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~--t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~q  773 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF--TSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQ  773 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeecc--CCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HH
Confidence            3555678999999999999987654455678999998654  33445677888999999999999999999998765 78


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ||++|+++|.|.++++.++ ..+-....+.|+.||++||.|||++++|||||...||||.+...|||.|||+++.+....
T Consensus       774 lvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~  852 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDE  852 (1177)
T ss_pred             HHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccc
Confidence            9999999999999988764 568888899999999999999999999999999999999999999999999998765322


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ......                                                                    .---.+
T Consensus       853 ~ey~~~--------------------------------------------------------------------~gK~pi  864 (1177)
T KOG1025|consen  853 KEYSAP--------------------------------------------------------------------GGKVPI  864 (1177)
T ss_pred             cccccc--------------------------------------------------------------------ccccCc
Confidence            111000                                                                    001356


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|||-|.+....|+.++|||||||++||++| |..||.+....+ +.+.+...-+++.++.++-++..+|.+||..|+..
T Consensus       865 kwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~e-I~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~  943 (1177)
T KOG1025|consen  865 KWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEE-IPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADS  943 (1177)
T ss_pred             HHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHH-hhHHHhccccCCCCCCccHHHHHHHHHHhccCccc
Confidence            7999999999999999999999999999997 999999987654 44556666678888999999999999999999999


Q ss_pred             CCCCCcC
Q 012762          402 RMGSKMG  408 (457)
Q Consensus       402 Rps~~~~  408 (457)
                      ||+++..
T Consensus       944 rp~fkel  950 (1177)
T KOG1025|consen  944 RPTFKEL  950 (1177)
T ss_pred             CccHHHH
Confidence            9995443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.6e-35  Score=327.46  Aligned_cols=238  Identities=19%  Similarity=0.235  Sum_probs=182.1

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .+.....||+|+||.||+|+++    .++..||+|.+.....       ....|++++++++|||||++++++...+..|
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~-------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~  759 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSI----KNGMQFVVKEINDVNS-------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAY  759 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEEC----CCCcEEEEEEccCCcc-------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCE
Confidence            4566778999999999999876    3788999999864321       1123688899999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH---MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH---~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      +||||+++|+|.++++.     +++..+..++.||+.||+|||   +.+|+||||||+||+++.++..++. ||......
T Consensus       760 lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~  833 (968)
T PLN00113        760 LIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLC  833 (968)
T ss_pred             EEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccc
Confidence            99999999999998853     788999999999999999999   6699999999999999988887765 55432110


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .                                                                          .....
T Consensus       834 ~--------------------------------------------------------------------------~~~~~  839 (968)
T PLN00113        834 T--------------------------------------------------------------------------DTKCF  839 (968)
T ss_pred             c--------------------------------------------------------------------------CCCcc
Confidence            0                                                                          00124


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHh-------------cccCCC--CCCCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVA-------------RALEFP--KEPSV  383 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~-------------~~~~~~--~~~~~  383 (457)
                      ||..|||||++.+..++.++|||||||++|||++|+.||...... ........             ......  .....
T Consensus       840 ~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  919 (968)
T PLN00113        840 ISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNE  919 (968)
T ss_pred             ccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHH
Confidence            889999999999999999999999999999999999999543211 00111000             000000  00011


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ..++.+++.+||+.||++||+    +.|+++.
T Consensus       920 ~~~~~~l~~~Cl~~~P~~RPt----~~evl~~  947 (968)
T PLN00113        920 IVEVMNLALHCTATDPTARPC----ANDVLKT  947 (968)
T ss_pred             HHHHHHHHHhhCcCCchhCcC----HHHHHHH
Confidence            124678999999999999999    7777654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=296.28  Aligned_cols=258  Identities=25%  Similarity=0.397  Sum_probs=218.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|.++.++|.|+||.||+|+++    .+++..|+|+++...   .....-+..|+-+++-++|+|||.+++.+...+
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~----~s~elaavkvVkLep---~dd~~~iqqei~~~~dc~h~nivay~gsylr~d   85 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDK----RSGELAAVKVVKLEP---GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD   85 (829)
T ss_pred             CccchhheeeecCCcccchhhhccc----ccCchhhheeeeccC---CccccccccceeeeecCCCcChHHHHhhhhhhc
Confidence            3468999999999999999999887    488899999997653   244555667888999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+++.||||.||+|.+.-+..  +.+++.++..+++..++||+|||++|-+|||||-.|||++..|.||+.|||.+..+.
T Consensus        86 klwicMEycgggslQdiy~~T--gplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqit  163 (829)
T KOG0576|consen   86 KLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQIT  163 (829)
T ss_pred             CcEEEEEecCCCcccceeeec--ccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhh
Confidence            999999999999998876654  889999999999999999999999999999999999999999999999999874432


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .                                               +.                       .+..+|+
T Consensus       164 a-----------------------------------------------ti-----------------------~Krksfi  173 (829)
T KOG0576|consen  164 A-----------------------------------------------TI-----------------------AKRKSFI  173 (829)
T ss_pred             h-----------------------------------------------hh-----------------------hhhhccc
Confidence            1                                               01                       1122578


Q ss_pred             CCCCccCchhh---cCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---CCCCChHHHHHHHH
Q 012762          320 GTHEYLAPEII---SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---EPSVPGPAKDLIAQ  393 (457)
Q Consensus       320 gt~~y~aPE~l---~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~  393 (457)
                      ||+.|||||+.   +...|+..+|||++|+...|+---++|.........+..+-.-.+..|.   ...+++.+.+|++.
T Consensus       174 GtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~  253 (829)
T KOG0576|consen  174 GTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKG  253 (829)
T ss_pred             CCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHH
Confidence            99999999997   3456999999999999999999988887766555555554444444443   34678899999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +|..+|.+||+    ++.+|.|||...
T Consensus       254 altknpKkRpt----aeklL~h~fvs~  276 (829)
T KOG0576|consen  254 ALTKNPKKRPT----AEKLLQHPFVSQ  276 (829)
T ss_pred             HhcCCCccCCC----hhhheeceeecc
Confidence            99999999999    999999999876

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-32  Score=258.85  Aligned_cols=262  Identities=18%  Similarity=0.221  Sum_probs=212.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCC-ceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNG-CFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~-~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+...++++...+-+|.||.||.|.|+..+..++ +.|-+|.++..  .+......+..|.-+|..+.|||+..+.++..
T Consensus       280 ~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~--AS~iQv~~~L~es~lly~~sH~nll~V~~V~i  357 (563)
T KOG1024|consen  280 TVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQH--ASQIQVNLLLQESMLLYGASHPNLLSVLGVSI  357 (563)
T ss_pred             hhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhc--ccHHHHHHHHHHHHHHhcCcCCCccceeEEEe
Confidence            4555678899999999999999998886655444 34556666443  44556677778888888889999999999886


Q ss_pred             cC-CcEEEEEeecCCCChHHHHHhCC------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEE
Q 012762          157 CP-RWSCLLTEFCPGGDLHVLRQRQP------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       157 ~~-~~~~lV~E~~~~~sL~~~~~~~~------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl  229 (457)
                      ++ ...++++.+..-|+|..++...+      ...++..+...++.|++.|++|||+.||||.||...|++|++.-+|||
T Consensus       358 e~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkl  437 (563)
T KOG1024|consen  358 EDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKL  437 (563)
T ss_pred             eccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEe
Confidence            54 56788999999999999988432      234677788889999999999999999999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|-.+++.+-+......                                                    +|         
T Consensus       438 tDsaLSRDLFP~DYhcL----------------------------------------------------GD---------  456 (563)
T KOG1024|consen  438 TDSALSRDLFPGDYHCL----------------------------------------------------GD---------  456 (563)
T ss_pred             ccchhccccCccccccc----------------------------------------------------CC---------
Confidence            99999876654332210                                                    00         


Q ss_pred             CCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                             .-.....||+||.+....|+.++|+||||++||||+| |+.||-..+..++. .++...+++..+.++|+++.
T Consensus       457 -------nEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~-~ylkdGyRlaQP~NCPDeLf  528 (563)
T KOG1024|consen  457 -------NENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEME-HYLKDGYRLAQPFNCPDELF  528 (563)
T ss_pred             -------CCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHH-HHHhccceecCCCCCcHHHH
Confidence                   0014668999999999999999999999999999997 99999887766554 45667788888889999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .+|..||..+|++||+    .+|+..
T Consensus       529 ~vMacCWallpeeRPs----f~Qlv~  550 (563)
T KOG1024|consen  529 TVMACCWALLPEERPS----FSQLVI  550 (563)
T ss_pred             HHHHHHHhcCcccCCC----HHHHHH
Confidence            9999999999999999    777643

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=1.7e-30  Score=237.10  Aligned_cols=213  Identities=37%  Similarity=0.595  Sum_probs=182.9

Q ss_pred             ecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecC
Q 012762           90 LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP  169 (457)
Q Consensus        90 LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~  169 (457)
                      ||+|.+|.||++...    .+++.+++|++.......  ....+.+|+++++.+.|++|+++++++......+++||++.
T Consensus         1 l~~g~~~~v~~~~~~----~~~~~~~~K~~~~~~~~~--~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~   74 (215)
T cd00180           1 LGEGGFGTVYLARDK----KTGKKVAIKIIKKEDSSS--LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCE   74 (215)
T ss_pred             CCcCCceEEEEEEec----CCCcEEEEEEeccccchh--HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCC
Confidence            689999999999875    258899999997653221  34678889999999999999999999999899999999999


Q ss_pred             CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCCCcCCCCCCcccccc
Q 012762          170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDNSTSTAQLV  248 (457)
Q Consensus       170 ~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~~~~~~~~~~~~  248 (457)
                      +++|..++.... ..++...+..++.+++.+|.+||+.|++|+||+|.||+++. ++.++|+|||.+........     
T Consensus        75 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-----  148 (215)
T cd00180          75 GGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS-----  148 (215)
T ss_pred             CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc-----
Confidence            899999887642 46899999999999999999999999999999999999998 89999999998754432110     


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCch
Q 012762          249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  328 (457)
                                                                                       ......+...|++||
T Consensus       149 -----------------------------------------------------------------~~~~~~~~~~~~~pe  163 (215)
T cd00180         149 -----------------------------------------------------------------LLKTIVGTPAYMAPE  163 (215)
T ss_pred             -----------------------------------------------------------------hhhcccCCCCccChh
Confidence                                                                             001124788999999


Q ss_pred             hhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          329 IISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       329 ~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      .+... .++.+.|+|++|+++++|                                 ..+.+++.+||..||++||+   
T Consensus       164 ~~~~~~~~~~~~D~~~lg~~~~~l---------------------------------~~~~~~l~~~l~~~p~~R~~---  207 (215)
T cd00180         164 VLLGKGYYSEKSDIWSLGVILYEL---------------------------------PELKDLIRKMLQKDPEKRPS---  207 (215)
T ss_pred             HhcccCCCCchhhhHHHHHHHHHH---------------------------------HHHHHHHHHHhhCCcccCcC---
Confidence            99887 788999999999999999                                 56899999999999999999   


Q ss_pred             ChHHHhcCC
Q 012762          408 GATAIKRHQ  416 (457)
Q Consensus       408 ~~~~ll~hp  416 (457)
                       +.++++|+
T Consensus       208 -~~~l~~~~  215 (215)
T cd00180         208 -AKEILEHL  215 (215)
T ss_pred             -HHHHhhCC
Confidence             99999874

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.2e-31  Score=294.07  Aligned_cols=236  Identities=16%  Similarity=0.200  Sum_probs=159.0

Q ss_pred             HcCC-CCCceEEEEE-------EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeec
Q 012762          142 MLDH-PFLPTLYATL-------DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRD  213 (457)
Q Consensus       142 ~l~H-~nIv~l~~~~-------~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrD  213 (457)
                      .+.| +||+.++++|       ...+.++++||++ +++|..++... ...+++..++.++.||+.||.|||++||||||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrD  105 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQGIVVHN  105 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            3455 5777888877       2234567889988 78999998653 35699999999999999999999999999999


Q ss_pred             CCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchh
Q 012762          214 LKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRR  293 (457)
Q Consensus       214 IKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (457)
                      |||+||||+..|.+|++|||++........                   ..+...+||.........       ...   
T Consensus       106 lKP~NiLl~~~~~~k~~d~~~~~~~~~~~~-------------------~~~ki~DfG~a~~~~~~~-------~~~---  156 (793)
T PLN00181        106 VRPSCFVMSSFNHVSFIESASCSDSGSDED-------------------ATTKSREIGSSRREEILS-------ERR---  156 (793)
T ss_pred             CCchhEEEcccCcEEEeeccccCccccccc-------------------Cccccccccccccccccc-------ccc---
Confidence            999999999999999999998754321100                   011122222221100000       000   


Q ss_pred             ccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc
Q 012762          294 RKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR  373 (457)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~  373 (457)
                          ......  ....+........+||+.|||||++.+..|+.++|||||||+||||++|.+|+.....  .+..+...
T Consensus       157 ----~~~~~~--~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~--~~~~~~~~  228 (793)
T PLN00181        157 ----IEKLEE--VKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR--TMSSLRHR  228 (793)
T ss_pred             ----hhhhhc--cccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH--HHHHHHHh
Confidence                000000  0000011112234699999999999999999999999999999999999998764221  22222111


Q ss_pred             ccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       374 ~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .. .+..........+++.+||..||.+||+    +.||++||||...
T Consensus       229 ~~-~~~~~~~~~~~~~~~~~~L~~~P~~Rps----~~eil~h~~~~~~  271 (793)
T PLN00181        229 VL-PPQILLNWPKEASFCLWLLHPEPSCRPS----MSELLQSEFINEP  271 (793)
T ss_pred             hc-ChhhhhcCHHHHHHHHHhCCCChhhCcC----hHHHhhchhhhhh
Confidence            11 1111112345678999999999999999    9999999999763

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.97  E-value=4.8e-30  Score=238.03  Aligned_cols=211  Identities=36%  Similarity=0.640  Sum_probs=175.3

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      |.+.+.||.|++|+||+|.+.    .++..+|+|.+......  .....+..|++.++.++|+|++++++++......++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~----~~~~~~~iK~~~~~~~~--~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~   74 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDK----GTGELVAVKVLKKEKTE--KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYL   74 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEc----CCCcEEEEEeeccccch--HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEE
Confidence            567899999999999999876    35789999999765332  245678889999999999999999999999899999


Q ss_pred             EEeecCCCChHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          164 LTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~-~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ++|++.+++|..++...  .. +++..+..++.|++.+|.|||+.+++|+||+|.||+++.++.++|+|||++.......
T Consensus        75 v~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~  152 (225)
T smart00221       75 VMEYCEGGDLFDYLRKK--GGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL  152 (225)
T ss_pred             EEeccCCCCHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcc
Confidence            99999999999998875  33 8899999999999999999999999999999999999999999999999876543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      ..                                                                     ......++.
T Consensus       153 ~~---------------------------------------------------------------------~~~~~~~~~  163 (225)
T smart00221      153 AA---------------------------------------------------------------------LLKTVKGTP  163 (225)
T ss_pred             cc---------------------------------------------------------------------cccceeccC
Confidence            00                                                                     001235788


Q ss_pred             CccCchhh-cCCCCCccchhhhhhHHHHHHhcCCCCCCC-CChH-HHHHHHH
Q 012762          323 EYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKG-IDHE-LTLANVV  371 (457)
Q Consensus       323 ~y~aPE~l-~~~~~~~~sDiwSlG~il~elltG~~Pf~~-~~~~-~~~~~~~  371 (457)
                      .|++||.+ ....++.++|+|+||+++++|++|+.||.. .... .+...+.
T Consensus       164 ~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~  215 (225)
T smart00221      164 FYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWS  215 (225)
T ss_pred             CcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHh
Confidence            99999999 666678899999999999999999999977 4444 3444433

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-32  Score=275.57  Aligned_cols=274  Identities=40%  Similarity=0.720  Sum_probs=232.4

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcEEEEEee
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~~lV~E~  167 (457)
                      ++|+|+||.|++++ +......+..||+|+.++......... ....|..++..++ ||.+|++.-.|+.+...+++++|
T Consensus         1 vlg~g~~gkvfLvr-k~~g~da~~~yamkvl~k~t~~~~~~~-~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~   78 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVR-KAGGADAGHLYAMKVLKKATLKVRDRT-HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDF   78 (612)
T ss_pred             CCCcCCCcchHHHH-Hhccccccchhhhhccccccccccccc-ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhh
Confidence            37999999999987 334456788999999988766555444 5566888999986 99999999999999999999999


Q ss_pred             cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCccccc
Q 012762          168 CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL  247 (457)
Q Consensus       168 ~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~  247 (457)
                      ..||.|...+..  ...+.+...+.+...++.+++++|+.+|+|||+|++||+++.+|++++.|||+++..-..+     
T Consensus        79 ~rgg~lft~l~~--~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~-----  151 (612)
T KOG0603|consen   79 LRGGDLFTRLSK--EVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEK-----  151 (612)
T ss_pred             cccchhhhcccc--CCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhh-----
Confidence            999999765544  3668888899999999999999999999999999999999999999999999976543111     


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCc
Q 012762          248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP  327 (457)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  327 (457)
                                                                                           ..|||..||||
T Consensus       152 ---------------------------------------------------------------------~~cgt~eymAp  162 (612)
T KOG0603|consen  152 ---------------------------------------------------------------------IACGTYEYRAP  162 (612)
T ss_pred             ---------------------------------------------------------------------hcccchhhhhh
Confidence                                                                                 11699999999


Q ss_pred             hhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCC-
Q 012762          328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-  406 (457)
Q Consensus       328 E~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~-  406 (457)
                      |+++  .+...+|.||||++++||++|..||.+    +....|+......|..  +...+++++..++..+|.+|.... 
T Consensus       163 EI~~--gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~Il~~~~~~p~~--l~~~a~~~~~~l~~r~p~nrLg~~~  234 (612)
T KOG0603|consen  163 EIIN--GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRILKAELEMPRE--LSAEARSLFRQLFKRNPENRLGAGP  234 (612)
T ss_pred             Hhhh--ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHHhhhccCCchh--hhHHHHHHHHHHHhhCHHHHhccCc
Confidence            9998  678899999999999999999999988    6667777666666655  788899999999999999999864 


Q ss_pred             cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccccC
Q 012762          407 MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTTNS  448 (457)
Q Consensus       407 ~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  448 (457)
                      ..+.++++|+||..++|+.+  +..+|||.|...+.++..+.+.
T Consensus       235 ~~~~eik~h~f~~~i~~~~l~~r~~~~~fkp~~~~e~~~~~fd~  278 (612)
T KOG0603|consen  235 DGVDEIKQHEFFQSIDWNELEARSRPPPFKPGSITERDVAQFDP  278 (612)
T ss_pred             chhHHHhccchheeeeHhhHhhcCCCCCCCCcccchhhhhhcCc
Confidence            57899999999999999955  6788899988877777665544

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-30  Score=231.65  Aligned_cols=284  Identities=18%  Similarity=0.287  Sum_probs=226.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~  155 (457)
                      ..+..+.|+++++||+|+||.+|+|...    .+|..||||+-+..     .....+..|..+.+.|+ ...|..+..++
T Consensus        10 ~~iv~gky~lvrkiGsGSFGdIy~~~~i----~~ge~VAiK~Es~~-----a~hpqL~yEskvY~iL~~g~GiP~i~~y~   80 (341)
T KOG1163|consen   10 ELIVGGKYKLVRKIGSGSFGDIYLGISI----TSGEEVAIKLESSK-----AKHPQLLYESKVYRILQGGVGIPHIRHYG   80 (341)
T ss_pred             hheeccceEEEEeecCCchhheeeeeec----cCCceEEEEeeccc-----CCCcchhHHHHHHHHhccCCCCchhhhhc
Confidence            4466788999999999999999999876    58999999998654     45556777999999996 57899999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEecc
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDF  232 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DF  232 (457)
                      .+..+-.|||+++ |.+|++++.-+ .+.++..+++-++-||+.-++|+|.+++|||||||+|+|+.-+   ..+.|+||
T Consensus        81 ~e~~ynvlVMdLL-GPsLEdLfnfC-~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDF  158 (341)
T KOG1163|consen   81 TEKDYNVLVMDLL-GPSLEDLFNFC-SRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDF  158 (341)
T ss_pred             cccccceeeeecc-CccHHHHHHHH-hhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEec
Confidence            9999999999999 99999998775 4779999999999999999999999999999999999999744   57899999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++...+..+....+-                                                               
T Consensus       159 GLaKky~d~~t~~HIpy---------------------------------------------------------------  175 (341)
T KOG1163|consen  159 GLAKKYRDIRTRQHIPY---------------------------------------------------------------  175 (341)
T ss_pred             cchhhhccccccccCcc---------------------------------------------------------------
Confidence            99988765543322110                                                               


Q ss_pred             cccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCCC---CCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPKE---PSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~  386 (457)
                      .....+.||..|.+-....+...+.+.|+-|+|.+|..+..|..||++..   ..+.+++|.......+..   ..+|.+
T Consensus       176 re~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~E  255 (341)
T KOG1163|consen  176 REDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAE  255 (341)
T ss_pred             ccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHH
Confidence            01114579999999988888888999999999999999999999999864   445677777777666543   467888


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHH-------hcCCCCCCCCchhhhccCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAI-------KRHQFFNGVNWALLRCAKPPFIP  435 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~l-------l~hp~f~~~~~~~~~~~~~~~~~  435 (457)
                      +...+.-|-..--++-|..-. +.++       |+|.+---.||..+++....--+
T Consensus       256 F~myl~Y~R~L~F~E~Pdy~y-lrqlFriLfr~ln~~~d~iyDW~~lkqk~~q~~~  310 (341)
T KOG1163|consen  256 FAMYLNYCRGLGFEEKPDYMY-LRQLFRILFRTLNHQYDYIYDWTMLKQKSQQSGR  310 (341)
T ss_pred             HHHHHHHHhhcCCCCCCcHHH-HHHHHHHHHhhccccCCeEeeHHHHHHHhhcccC
Confidence            999999987766666666321 2222       45555455799999765554443

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-30  Score=235.12  Aligned_cols=239  Identities=21%  Similarity=0.309  Sum_probs=181.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE-EEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA-TLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~-~~~~~~  159 (457)
                      +.|.|.+.||+|.||.+-+|+++    .++..+|+|.+.+...    ....|.+|...--.| .|.||+.-|+ .|+..+
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr----~s~t~ivlKavp~p~t----t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d   95 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHR----QSKTRIVLKAVPRPQT----TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSD   95 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeecc----CCceEEEeeccCcchh----hHHHHHHHhccceeeccchhhhHHHHHHhhcCc
Confidence            56999999999999999999988    4788999999876543    344455565543334 5889988776 577888


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc--CCCEEEeccCCCcC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLK  237 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~  237 (457)
                      .++++|||++.|+|..-+..   .++.|...+.++.|+++||.|||++++||||||.+||||-.  .-.|||||||+.+.
T Consensus        96 ~YvF~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen   96 AYVFVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             eEEEeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccc
Confidence            88999999999999765544   67999999999999999999999999999999999999953  24899999998753


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ...-..                                                                         .
T Consensus       173 ~g~tV~-------------------------------------------------------------------------~  179 (378)
T KOG1345|consen  173 VGTTVK-------------------------------------------------------------------------Y  179 (378)
T ss_pred             cCceeh-------------------------------------------------------------------------h
Confidence            321000                                                                         1


Q ss_pred             ccCCCCccCchhhcCC---C--CCccchhhhhhHHHHHHhcCCCCCCCCChH-H---HHHHHHhc-ccCCCC-CCCCChH
Q 012762          318 FVGTHEYLAPEIISGE---G--HGNAVDWWTLGIFIFELFYGTTPFKGIDHE-L---TLANVVAR-ALEFPK-EPSVPGP  386 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~---~--~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~---~~~~~~~~-~~~~~~-~~~~~~~  386 (457)
                      +--+..|.+||.+...   .  ..+.+|||.||+++|.+++|.+||+..... .   .+.+...+ ....|. ...+++.
T Consensus       180 ~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~  259 (378)
T KOG1345|consen  180 LEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEK  259 (378)
T ss_pred             hhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHH
Confidence            1246679999987533   2  367899999999999999999999854321 1   12222222 223332 2357788


Q ss_pred             HHHHHHHHhhhCCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMG  404 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps  404 (457)
                      +..+.++-|..++++|-.
T Consensus       260 a~r~Fkk~lt~~~~drck  277 (378)
T KOG1345|consen  260 ALRLFKKSLTPRFKDRCK  277 (378)
T ss_pred             HHHHHHHhcCCcccccch
Confidence            999999999999999955

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.96  E-value=8e-28  Score=236.87  Aligned_cols=256  Identities=25%  Similarity=0.326  Sum_probs=194.9

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC----CCCceEEEEE-Ec
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH----PFLPTLYATL-DC  157 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H----~nIv~l~~~~-~~  157 (457)
                      +|++.++||+|+||.||+|.+....   ...+|+|+.......   ....+..|..+|..+..    .++..+++.+ ..
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~---~~~~a~K~e~~~~~~---~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~   92 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEK---NKEYAKKLEKKELGS---KPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRST   92 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCC---CeeEEEEEEEecccC---CCccchhHHHHHHHHhhhcCCCCCCEEEEeccCC
Confidence            7999999999999999999976421   468999998764221   11256779999988863    6899999999 57


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-----CCEEEecc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-----GHIMLTDF  232 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-----~~vkl~DF  232 (457)
                      +.+.||||+++ |.+|.++....+.+.++...+..++.|++.+|++||+.|+|||||||+|+++...     ..+.|.||
T Consensus        93 ~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDf  171 (322)
T KOG1164|consen   93 EDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDF  171 (322)
T ss_pred             CceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEec
Confidence            88899999999 9999999988777899999999999999999999999999999999999999865     36999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++..........                                                         .   ..+..
T Consensus       172 Glar~~~~~~~~~~---------------------------------------------------------~---~~~~r  191 (322)
T KOG1164|consen  172 GLARRFKYVGDSGG---------------------------------------------------------N---LRPPR  191 (322)
T ss_pred             CCCccccccCCCCc---------------------------------------------------------c---cccCC
Confidence            99973321110000                                                         0   00000


Q ss_pred             cccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHH---hcccCCCCCCCCChHHHH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV---ARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  389 (457)
                      .....+.||..|+++.+..+...+.+.|+||++.++.||+.|..||.+.........+.   ............+..+..
T Consensus       192 ~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (322)
T KOG1164|consen  192 PQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAK  271 (322)
T ss_pred             CCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHH
Confidence            10124569999999999999999999999999999999999999997765332222221   111111112235567888


Q ss_pred             HHHHHhhhCCCCCCCC
Q 012762          390 LIAQLLVKDPTRRMGS  405 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~  405 (457)
                      ++..+-..+...+|..
T Consensus       272 ~~~~~~~~~~~~~Pdy  287 (322)
T KOG1164|consen  272 ILEYIDSLDYEDKPDY  287 (322)
T ss_pred             HHHHhhccCCcCCCCH
Confidence            8888878899999994

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-27  Score=221.28  Aligned_cols=248  Identities=20%  Similarity=0.332  Sum_probs=197.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~~  161 (457)
                      .|++.++||+|.||++++|...    .+++.||||.-..+     ...-+++.|.+..+.| ..++|..+|-+..++.+-
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl----~nne~VAIKfEPrk-----S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~N   99 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNL----YNNEPVAIKFEPRK-----SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYN   99 (449)
T ss_pred             cceeccccccCcceeeeccccc----ccCceEEEEecccc-----CCcchHHHHHHHHHHHcCCCCCCceeeeccccchh
Confidence            6999999999999999999865    58999999987543     3445567788888888 579999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-----CEEEeccCCCc
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-----HIMLTDFDLSL  236 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-----~vkl~DFG~s~  236 (457)
                      .||||++ |.+|+++..-+ +++|+...+..++.||+.-++|+|++.+|.|||||+|+||...+     .+.|+|||+++
T Consensus       100 iLVidLL-GPSLEDLFD~C-gR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen  100 ILVIDLL-GPSLEDLFDLC-GRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             hhhhhhh-CcCHHHHHHHh-cCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            9999999 99999998876 57899999999999999999999999999999999999997544     58999999999


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ...++.+...++-                                                              . ...
T Consensus       178 ~YrDp~TkqHIPY--------------------------------------------------------------r-E~K  194 (449)
T KOG1165|consen  178 EYRDPKTKQHIPY--------------------------------------------------------------R-EHK  194 (449)
T ss_pred             hhcCccccccCcc--------------------------------------------------------------c-ccc
Confidence            8887665443211                                                              0 112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC---ChHHHHHHHHhcccCCCCC---CCCChHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI---DHELTLANVVARALEFPKE---PSVPGPAKDL  390 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l  390 (457)
                      ++.||..||+-....|...+.+.|+-|||-+++..|.|..||.+.   ++++.+++|-+..-..+..   ..+|.++..-
T Consensus       195 SLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Y  274 (449)
T KOG1165|consen  195 SLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATY  274 (449)
T ss_pred             ccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHH
Confidence            457999999999999999999999999999999999999999875   4556666655443333321   2355555554


Q ss_pred             HHHHhhhCCCCCCC
Q 012762          391 IAQLLVKDPTRRMG  404 (457)
Q Consensus       391 l~~~L~~dP~~Rps  404 (457)
                      |.-.-..+-++-|.
T Consensus       275 l~yvR~L~F~E~PD  288 (449)
T KOG1165|consen  275 LRYVRRLDFFETPD  288 (449)
T ss_pred             HHHHHhcCcccCCC
Confidence            44444444444444

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=2.2e-28  Score=219.34  Aligned_cols=161  Identities=20%  Similarity=0.192  Sum_probs=128.1

Q ss_pred             CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccC
Q 012762          171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD  250 (457)
Q Consensus       171 ~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~  250 (457)
                      |+|.+++... ...+++..++.++.||+.||.|||+.+      ||+|||++.++.+|+  ||++......         
T Consensus         1 GsL~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~---------   62 (176)
T smart00750        1 VSLADILEVR-GRPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTPE---------   62 (176)
T ss_pred             CcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeeccc---------
Confidence            6888888764 356999999999999999999999998      999999999999999  9987543210         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhh
Q 012762          251 QSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEII  330 (457)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l  330 (457)
                                                                                        ...||+.|||||++
T Consensus        63 ------------------------------------------------------------------~~~g~~~y~aPE~~   76 (176)
T smart00750       63 ------------------------------------------------------------------QSRVDPYFMAPEVI   76 (176)
T ss_pred             ------------------------------------------------------------------cCCCcccccChHHh
Confidence                                                                              01488999999999


Q ss_pred             cCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCC-----CCCCCCh--HHHHHHHHHhhhCCCCC
Q 012762          331 SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFP-----KEPSVPG--PAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       331 ~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~--~~~~ll~~~L~~dP~~R  402 (457)
                      .+..++.++|||||||++|||++|+.||...... ..+..+........     ....++.  .+.++|.+||..||.+|
T Consensus        77 ~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~R  156 (176)
T smart00750       77 QGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRR  156 (176)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccc
Confidence            9999999999999999999999999999765432 23333333222211     1112333  58999999999999999


Q ss_pred             CCCCcChHHHhcCCCCC
Q 012762          403 MGSKMGATAIKRHQFFN  419 (457)
Q Consensus       403 ps~~~~~~~ll~hp~f~  419 (457)
                      |+    +.++++|+|+.
T Consensus       157 p~----~~~ll~~~~~~  169 (176)
T smart00750      157 EA----ANHYLAHCRAL  169 (176)
T ss_pred             cC----HHHHHHHHHHH
Confidence            99    99999999864

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.95  E-value=2.3e-28  Score=256.12  Aligned_cols=265  Identities=38%  Similarity=0.675  Sum_probs=203.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      -.+|..++.|-.|+||-||+++++    .+.+.||+|+ +++.+.-++          ||...+.|.+|           
T Consensus        82 e~df~~IklisngAygavylvrh~----~trqrfa~ki-Nkq~lilRn----------ilt~a~npfvv-----------  135 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHK----ETRQRFAMKI-NKQNLILRN----------ILTFAGNPFVV-----------  135 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeecc----ccccchhhcc-cccchhhhc----------cccccCCccee-----------
Confidence            368999999999999999999987    4778899954 444331111          44444555555           


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                                |+=..+++..  +.++.        +++.+++|||+-||+|||+||+|.+|+.-|++|++|||+++....
T Consensus       136 ----------gDc~tllk~~--g~lPv--------dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLm  195 (1205)
T KOG0606|consen  136 ----------GDCATLLKNI--GPLPV--------DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLM  195 (1205)
T ss_pred             ----------chhhhhcccC--CCCcc--------hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhh
Confidence                      3333334432  33442        348899999999999999999999999999999999999876543


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...+ .+....                                                      +............+|
T Consensus       196 s~at-nl~eg~------------------------------------------------------I~k~t~Ef~dKqvcg  220 (1205)
T KOG0606|consen  196 SLAT-NLKEGH------------------------------------------------------IEKDTHEFQDKQVCG  220 (1205)
T ss_pred             hccc-hhhhcc------------------------------------------------------hHHHHHHhhhccccC
Confidence            3222 111000                                                      000011112234689


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-CCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-PSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|+|||++...+|+..+|+|++|+|+||.+.|..||.+...++.+...+...+.+++. ..++.++++++.++|..+|
T Consensus       221 TPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp  300 (1205)
T KOG0606|consen  221 TPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNP  300 (1205)
T ss_pred             CccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhCh
Confidence            999999999999999999999999999999999999999999999999999888877764 4678899999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCcccccccc
Q 012762          400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTN  447 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (457)
                      ..|.... .+-++.+|+||+..||.-|-.++.+|+|......|...-.
T Consensus       301 ~~Rlgt~-ga~evk~h~ff~~LDw~~llRqkaefvpql~~eddtsyfd  347 (1205)
T KOG0606|consen  301 LCRLGTG-GALEVKQHGFFQLLDWKSLLRQKAEFVPQLESEDDTSYFD  347 (1205)
T ss_pred             Hhhcccc-hhhhhhhccceeecccchhhhhhccccccccccccchhhc
Confidence            9997654 6889999999999999977778899999887777655433

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.95  E-value=6.9e-26  Score=219.93  Aligned_cols=262  Identities=32%  Similarity=0.517  Sum_probs=205.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC-CCceEEEEEEcCCcEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP-FLPTLYATLDCPRWSC  162 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~-nIv~l~~~~~~~~~~~  162 (457)
                      |.+.+.||.|+||.||++.+.       ..+|+|.+.............+.+|+.+++.+.|+ +|+++++++......+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~-------~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~   74 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR-------KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLY   74 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec-------cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEE
Confidence            788999999999999999864       67899999877554443577788899999999988 7999999998777789


Q ss_pred             EEEeecCCCChHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCCcCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPD-KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKGDN  240 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~-~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~~~  240 (457)
                      ++++++.+++|..++..... ..+.......++.|++.++.|+|+.+++||||||+||+++..+ .++++|||++.....
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~  154 (384)
T COG0515          75 LVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPD  154 (384)
T ss_pred             EEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCC
Confidence            99999999999966665421 2689999999999999999999999999999999999999988 799999999863332


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .......                                                                .......+|
T Consensus       155 ~~~~~~~----------------------------------------------------------------~~~~~~~~~  170 (384)
T COG0515         155 PGSTSSI----------------------------------------------------------------PALPSTSVG  170 (384)
T ss_pred             CCccccc----------------------------------------------------------------ccccccccc
Confidence            1111000                                                                001224579


Q ss_pred             CCCccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccC-CCCCC--CC----ChH
Q 012762          321 THEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALE-FPKEP--SV----PGP  386 (457)
Q Consensus       321 t~~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~-~~~~~--~~----~~~  386 (457)
                      |..|++||.+.+   ..+....|+||+|++++++++|..||.....    ......+...... .....  ..    ...
T Consensus       171 t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (384)
T COG0515         171 TPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKA  250 (384)
T ss_pred             ccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHH
Confidence            999999999988   5688999999999999999999999887663    3333333333322 22111  11    146


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.+++.+++..+|..|.+    ..+...++|...
T Consensus       251 ~~~~~~~~~~~~~~~r~~----~~~~~~~~~~~~  280 (384)
T COG0515         251 ASDLLKKLLAKDPKNRLS----SSSDLSHDLLAH  280 (384)
T ss_pred             HHHHHHHHHhcCchhcCC----HHHHhhchHhhC
Confidence            899999999999999999    777777755554

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.6e-28  Score=257.28  Aligned_cols=263  Identities=24%  Similarity=0.322  Sum_probs=193.5

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehh---hhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR---ELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~---~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ...+.+|.|++|.|+.+....    ....++.|.+...   ..........+..|.-+-..|.|+|++..+..+.+....
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~----~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~  396 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRS----DLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGI  396 (601)
T ss_pred             CccceeeecccCceEEEEecC----CCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccc
Confidence            467889999999888776542    3334444443311   111111112244455566678999998877766655555


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      .-+||||++ +|+.++...  +.++..++..++.|++.||+|||+.||.|||||++|+++..+|.+||+|||.+....-.
T Consensus       397 ~~~mE~~~~-Dlf~~~~~~--~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~  473 (601)
T KOG0590|consen  397 LQSMEYCPY-DLFSLVMSN--GKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYP  473 (601)
T ss_pred             hhhhhcccH-HHHHHHhcc--cccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccC
Confidence            555999999 999988874  57899999999999999999999999999999999999999999999999987544321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      -..                                                                  .......++|+
T Consensus       474 ~e~------------------------------------------------------------------~~~~~~g~~gS  487 (601)
T KOG0590|consen  474 WEK------------------------------------------------------------------NIHESSGIVGS  487 (601)
T ss_pred             cch------------------------------------------------------------------hhhhhcCcccC
Confidence            110                                                                  01122356899


Q ss_pred             CCccCchhhcCCCCCc-cchhhhhhHHHHHHhcCCCCCCCCChHHHHH-HHH-hcccC-----CCCCCCCChHHHHHHHH
Q 012762          322 HEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDHELTLA-NVV-ARALE-----FPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~-~sDiwSlG~il~elltG~~Pf~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~~ll~~  393 (457)
                      ..|+|||++.+..|+. ..||||.|+++..|.+|+.||......+... ... .....     ......++...+.+|.+
T Consensus       488 ~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~  567 (601)
T KOG0590|consen  488 DPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYR  567 (601)
T ss_pred             CcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHH
Confidence            9999999999999965 7899999999999999999997655443321 110 00000     01123467788999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ||+.||.+|.+    +++|++.+||+.++=+
T Consensus       568 ~l~~~P~~R~t----i~~i~~d~W~~~i~~c  594 (601)
T KOG0590|consen  568 MLQLDPTKRIT----IEQILNDEWIRSIECC  594 (601)
T ss_pred             HccCChhheec----HHHHhhChHhhhcceE
Confidence            99999999999    9999999999987644

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=1.2e-26  Score=228.98  Aligned_cols=145  Identities=22%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh--hhhhHHHHHHHHHHHHHHcCCCCCce-EEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL--VSRNKESRARIEREILEMLDHPFLPT-LYATL  155 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~~~E~~il~~l~H~nIv~-l~~~~  155 (457)
                      .-.++|.+.++||+|+||+||+|+++.   .+++.||||++.....  ........+.+|+++|+.++|+||+. ++++ 
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~---~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~-   90 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAG---DPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT-   90 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcC---CCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc-
Confidence            345689999999999999999998763   2567789998753211  12233566889999999999999985 5442 


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecC-CCCCeEEccCCCEEEeccCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDL-KPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDI-Kp~NIll~~~~~vkl~DFG~  234 (457)
                         +..||||||++|++|... .  .   ..   ...++.|++.+|.|||+.||+|||| ||+|||++.++.+||+|||+
T Consensus        91 ---~~~~LVmE~~~G~~L~~~-~--~---~~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGl  158 (365)
T PRK09188         91 ---GKDGLVRGWTEGVPLHLA-R--P---HG---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQL  158 (365)
T ss_pred             ---CCcEEEEEccCCCCHHHh-C--c---cc---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECcc
Confidence               457999999999999632 1  1   11   1467899999999999999999999 99999999999999999999


Q ss_pred             CcCCC
Q 012762          235 SLKGD  239 (457)
Q Consensus       235 s~~~~  239 (457)
                      ++...
T Consensus       159 A~~~~  163 (365)
T PRK09188        159 ASVFR  163 (365)
T ss_pred             ceecc
Confidence            87664

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-25  Score=204.14  Aligned_cols=266  Identities=20%  Similarity=0.334  Sum_probs=213.0

Q ss_pred             ChhHHHHHHhhhcCCCCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHH
Q 012762           57 DPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE  136 (457)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E  136 (457)
                      +..|+..+... ..........++..++.++.+|.+...|..|+|+|.      |..+++|+++.+....+. ...|..|
T Consensus       166 dt~wkgtktr~-rdatlsr~~gid~~~lnl~tkl~e~hsgelwrgrwq------gndivakil~vr~~t~ri-srdfnee  237 (448)
T KOG0195|consen  166 DTTWKGTKTRT-RDATLSRYTGIDVSSLNLITKLAESHSGELWRGRWQ------GNDIVAKILNVREVTARI-SRDFNEE  237 (448)
T ss_pred             ccccccccccc-cccccccccCcchhhhhhhhhhccCCCccccccccc------Ccchhhhhhhhhhcchhh-cchhhhh
Confidence            44455533222 222333455677788889999999999999999985      445777998877665443 3446668


Q ss_pred             HHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecC
Q 012762          137 REILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDL  214 (457)
Q Consensus       137 ~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDI  214 (457)
                      .-.|+.+.||||+.+++.+....++.++..|++.|+|+.+++...+-..+..++..++.+|+.|+.|||+..  |.---|
T Consensus       238 fp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~l  317 (448)
T KOG0195|consen  238 FPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYL  317 (448)
T ss_pred             CcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhc
Confidence            888888999999999999999999999999999999999999987777888999999999999999999875  444568


Q ss_pred             CCCCeEEccCCCEEE--eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcch
Q 012762          215 KPENVLVRSDGHIML--TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR  292 (457)
Q Consensus       215 Kp~NIll~~~~~vkl--~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      ....++|+++.+.+|  +|--++...                                                      
T Consensus       318 ns~hvmidedltarismad~kfsfqe------------------------------------------------------  343 (448)
T KOG0195|consen  318 NSKHVMIDEDLTARISMADTKFSFQE------------------------------------------------------  343 (448)
T ss_pred             ccceEEecchhhhheecccceeeeec------------------------------------------------------
Confidence            888999998876554  343332111                                                      


Q ss_pred             hccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCC---CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH
Q 012762          293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGH---GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN  369 (457)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~---~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~  369 (457)
                                             ......+.||+||.++..+-   -.++|+|||++++|||.|.+.||...+..+.-.+
T Consensus       344 -----------------------~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmk  400 (448)
T KOG0195|consen  344 -----------------------VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMK  400 (448)
T ss_pred             -----------------------cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhh
Confidence                                   01235789999999988764   3479999999999999999999999998888888


Q ss_pred             HHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          370 VVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      +....++...++.++..+..|+.-|+..||-+||.+-+
T Consensus       401 ialeglrv~ippgis~hm~klm~icmnedpgkrpkfdm  438 (448)
T KOG0195|consen  401 IALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDM  438 (448)
T ss_pred             hhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcce
Confidence            88888888888889999999999999999999999544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.92  E-value=6.6e-26  Score=238.02  Aligned_cols=248  Identities=21%  Similarity=0.264  Sum_probs=180.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-hhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +|...+.||.+.|=+|.+|.++     .|. |+|||+-++.. .+-....+...|++ ...++|||++.+.-+...++..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~-----eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAA   96 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDR-----EGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAA   96 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCC-----Cce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHH
Confidence            6888999999999999998864     555 99999977652 22222333333555 6667999999999998888889


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||-+|+ ..+|++.+..+  .-+...+.+.|+.||+.||.-+|..||+|+|||.+||||++-+.+.|+||.--+-.   
T Consensus        97 ylvRqyv-khnLyDRlSTR--PFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPt---  170 (1431)
T KOG1240|consen   97 YLVRQYV-KHNLYDRLSTR--PFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPT---  170 (1431)
T ss_pred             HHHHHHH-hhhhhhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCc---
Confidence            9999999 78998888764  44677888999999999999999999999999999999999999999999632110   


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                        -.|+.+                   +++..++-+..       ..-
T Consensus       171 ----------------------------------YLPeDN-------------------Padf~fFFDTS-------rRR  190 (1431)
T KOG1240|consen  171 ----------------------------------YLPEDN-------------------PADFTFFFDTS-------RRR  190 (1431)
T ss_pred             ----------------------------------cCCCCC-------------------cccceEEEecC-------Cce
Confidence                                              001111                   12211111111       123


Q ss_pred             CCccCchhhcCC----------C-CCccchhhhhhHHHHHHhc-CCCCCCCCC-------hHHHHHHHHhcccCCCCCCC
Q 012762          322 HEYLAPEIISGE----------G-HGNAVDWWTLGIFIFELFY-GTTPFKGID-------HELTLANVVARALEFPKEPS  382 (457)
Q Consensus       322 ~~y~aPE~l~~~----------~-~~~~sDiwSlG~il~ellt-G~~Pf~~~~-------~~~~~~~~~~~~~~~~~~~~  382 (457)
                      .+|.|||.+...          + .+++.||||+||+++||++ |++||.-..       +....+..+++.        
T Consensus       191 tCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~I--------  262 (1431)
T KOG1240|consen  191 TCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKI--------  262 (1431)
T ss_pred             eeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhC--------
Confidence            489999998642          2 4678999999999999997 799985311       011111111111        


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      -+..+++||..|++.||++|.+    +++.|+-
T Consensus       263 ed~~~Rnlil~Mi~rdPs~RlS----AedyL~~  291 (1431)
T KOG1240|consen  263 EDVSLRNLILSMIQRDPSKRLS----AEDYLQK  291 (1431)
T ss_pred             cCccHHHHHHHHHccCchhccC----HHHHHHh
Confidence            2236899999999999999999    9999986

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=198.52  Aligned_cols=140  Identities=15%  Similarity=0.126  Sum_probs=113.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHH------HHHHHHHHHHcCCCCCceEEEE
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR------ARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~------~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      .++|++++.||.|+||.||++..      ++..+|+|++.......+.....      +.+|++.+.+|.|++|..+.++
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~------~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~  103 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT------DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDF  103 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec------CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEe
Confidence            46899999999999999998653      35579999997654333333333      5788889999999999999988


Q ss_pred             EEcC--------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC
Q 012762          155 LDCP--------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       155 ~~~~--------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~  226 (457)
                      +...        +..+|||||++|.+|.++..      +++    ....+++.+|..||+.|++||||||.||+++.+| 
T Consensus       104 ~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-  172 (232)
T PRK10359        104 YLLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-  172 (232)
T ss_pred             eeecccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-
Confidence            6543        35789999999999977632      333    2456999999999999999999999999999988 


Q ss_pred             EEEeccCCCcC
Q 012762          227 IMLTDFDLSLK  237 (457)
Q Consensus       227 vkl~DFG~s~~  237 (457)
                      ++|+|||....
T Consensus       173 i~liDfg~~~~  183 (232)
T PRK10359        173 LRIIDLSGKRC  183 (232)
T ss_pred             EEEEECCCccc
Confidence            99999998643

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.91  E-value=2.8e-24  Score=195.02  Aligned_cols=144  Identities=24%  Similarity=0.260  Sum_probs=110.1

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH-----------------------HHHHHHHHHHHHHc
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK-----------------------ESRARIEREILEML  143 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~-----------------------~~~~~~E~~il~~l  143 (457)
                      ...||+|+||+||+|.+.     +|+.||||+++.........                       ......|.++|.++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-----~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   76 (190)
T cd05147           2 NGCISTGKEANVYHATTA-----NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRL   76 (190)
T ss_pred             CCccccccceEEEEEECC-----CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999864     68899999997653211110                       12234599999999


Q ss_pred             CCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeecCCCCCeEEc
Q 012762          144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL-HMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       144 ~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yL-H~~~iiHrDIKp~NIll~  222 (457)
                      .+++|.....+.. . ..+|||||++|++|...+..  ...+++..+..++.|++.+|.|| |+.||+||||||+|||++
T Consensus        77 ~~~~v~~p~~~~~-~-~~~iVmE~i~g~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~  152 (190)
T cd05147          77 VTAGIPCPEPILL-K-SHVLVMEFIGDDGWAAPRLK--DAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH  152 (190)
T ss_pred             HHCCCCCCcEEEe-c-CCEEEEEEeCCCCCcchhhh--cCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE
Confidence            8887644333222 2 23899999988877544322  25789999999999999999999 699999999999999998


Q ss_pred             cCCCEEEeccCCCcCCCC
Q 012762          223 SDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~~~  240 (457)
                       ++.++|+|||++.....
T Consensus       153 -~~~v~LiDFG~a~~~~~  169 (190)
T cd05147         153 -DGKLYIIDVSQSVEHDH  169 (190)
T ss_pred             -CCcEEEEEccccccCCC
Confidence             57899999999875543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-24  Score=205.51  Aligned_cols=277  Identities=23%  Similarity=0.295  Sum_probs=184.3

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCC------C------------------CC-------ceEEEEEeehhhh
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS------N------------------NG-------CFFAAKVMDKREL  124 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~------~------------------~~-------~~vAvK~~~~~~~  124 (457)
                      ...+.+++|.+.+.||+|..+.||.|+......      .                  ..       -..|||.+-.-+.
T Consensus       151 dskFtiddyeiG~~igkGC~AaVY~A~~~~dg~~le~~~~t~~~pgf~p~ts~p~e~~q~~~p~~~aFPLAiKmMfN~~~  230 (598)
T KOG4158|consen  151 DSKFTIDDYEIGEFIGKGCNAAVYSARLANDGSDLESSGNTHYGPGFNPVTSIPAEIPQVSKPAQKAFPLAIKMMFNFEH  230 (598)
T ss_pred             hcccchhhhcccchhhccchhhhhhhhcCCCcccccccCCCCcCCCcCCCcCCcccCCcccCccccccchHHHHhccccc
Confidence            345778999999999999999999988654110      0                  00       1235555432211


Q ss_pred             hhhh--HHHHHHHHH------HHH--------HH-------c-CCCCCceEEEEEEcC----------------------
Q 012762          125 VSRN--KESRARIER------EIL--------EM-------L-DHPFLPTLYATLDCP----------------------  158 (457)
Q Consensus       125 ~~~~--~~~~~~~E~------~il--------~~-------l-~H~nIv~l~~~~~~~----------------------  158 (457)
                      .+.+  ..+..-+|.      ..+        +.       | +|||||+++++|.+.                      
T Consensus       231 ~s~~~~iL~sM~~ElvPa~~~a~~~e~~~~t~R~l~nqtvhLa~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~  310 (598)
T KOG4158|consen  231 DSGDAHILKSMGNELVPAPNAAKLLEGQMGTFRPLPNQTVHLAKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPS  310 (598)
T ss_pred             CCchHHHHHHhhhhccCcchhhhhcccccceeeeCCCCCcccCCCCCEEeehhhhhhhhccCCchhhhCcccccceeccc
Confidence            1110  111111121      011        11       1 599999999987542                      


Q ss_pred             -----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc--CC--CEEE
Q 012762          159 -----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DG--HIML  229 (457)
Q Consensus       159 -----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~--~~--~vkl  229 (457)
                           ..+|+||.-+ ..+|++++-.   ...+....+-++.|+++|+.|||.+||.|||+|.+||||.-  |+  .+.|
T Consensus       311 g~g~~~tlylvMkrY-~~tLr~yl~~---~~~s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVv  386 (598)
T KOG4158|consen  311 GAGEPKTLYLVMKRY-RQTLREYLWT---RHRSYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVV  386 (598)
T ss_pred             ccCCCceEEEehhcc-hhhHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEE
Confidence                 2469999988 7899888866   34566677788899999999999999999999999999963  33  5789


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||++...+.........+                                                            
T Consensus       387 aDFGCcLAd~~hGlqlpy~S------------------------------------------------------------  406 (598)
T KOG4158|consen  387 ADFGCCLADDNHGLQLPYES------------------------------------------------------------  406 (598)
T ss_pred             cccceeeecccccccccccc------------------------------------------------------------
Confidence            99998754332111111110                                                            


Q ss_pred             CCccccccccCCCCccCchhhcCCC------CCccchhhhhhHHHHHHhcCCCCCCCCChHHH-HHHHHhcccCCC-CCC
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGEG------HGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-LANVVARALEFP-KEP  381 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~~------~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~-~~~~~~~~~~~~-~~~  381 (457)
                          .....-|....||||+....+      --.++|.|+.|.+.||++....||++..+... .....+.  .+| -+.
T Consensus       407 ----~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~--qLPalp~  480 (598)
T KOG4158|consen  407 ----DEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQES--QLPALPS  480 (598)
T ss_pred             ----ccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhh--hCCCCcc
Confidence                111234788899999986543      13489999999999999999999988433211 1111111  222 234


Q ss_pred             CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       382 ~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      .+++.+++++..+|+.||++|++. .++..+++.-.+..-+|
T Consensus       481 ~vpp~~rqlV~~lL~r~pskRvsp-~iAANvl~LsLw~~~~~  521 (598)
T KOG4158|consen  481 RVPPVARQLVFDLLKRDPSKRVSP-NIAANVLNLSLWRMGED  521 (598)
T ss_pred             cCChHHHHHHHHHhcCCccccCCc-cHHHhHHHHHHhcCchH
Confidence            589999999999999999999984 44666777655555555

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.90  E-value=8.2e-24  Score=200.46  Aligned_cols=236  Identities=25%  Similarity=0.319  Sum_probs=150.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC----------CCCCceEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD----------HPFLPTLY  152 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~----------H~nIv~l~  152 (457)
                      .+...+.||.|+|+.||.+++.    .+|+.+|+|++...........+.+++|.-....+.          |-.++--+
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~----~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~   88 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDV----ETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPL   88 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---S
T ss_pred             EEEEccccccCCceEEEEEEEc----cCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeee
Confidence            3677889999999999999987    589999999987665555555666665553333321          21222222


Q ss_pred             EEE---------EcC---C-----cEEEEEeecCCCChHHHHHh---CCCC--CCCHHHHHHHHHHHHHHHHHHHHcCce
Q 012762          153 ATL---------DCP---R-----WSCLLTEFCPGGDLHVLRQR---QPDK--RFHESAVRFYASEVVVALEFLHMMGII  210 (457)
Q Consensus       153 ~~~---------~~~---~-----~~~lV~E~~~~~sL~~~~~~---~~~~--~~~~~~~~~i~~qi~~~L~yLH~~~ii  210 (457)
                      +..         ...   .     ..+++|+-+ -++|..++..   ....  .+.......+..|+++.+++||..|+|
T Consensus        89 d~~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlV  167 (288)
T PF14531_consen   89 DLLRIPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLV  167 (288)
T ss_dssp             EEEEETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             EEEEEcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceE
Confidence            221         111   1     247888888 7888766543   2111  122223344558999999999999999


Q ss_pred             eecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          211 YRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       211 HrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      |+||||+|+|++.+|.++|+||+..........                                               
T Consensus       168 Hgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~-----------------------------------------------  200 (288)
T PF14531_consen  168 HGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYR-----------------------------------------------  200 (288)
T ss_dssp             EST-SGGGEEE-TTS-EEE--GGGEEETTEEEE-----------------------------------------------
T ss_pred             ecccceeeEEEcCCCCEEEcChHHHeecCceee-----------------------------------------------
Confidence            999999999999999999999987543321100                                               


Q ss_pred             chhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC--------CCCccchhhhhhHHHHHHhcCCCCCCCCC
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE--------GHGNAVDWWTLGIFIFELFYGTTPFKGID  362 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~--------~~~~~sDiwSlG~il~elltG~~Pf~~~~  362 (457)
                                                ....+..|.|||.....        .++.+.|.|+||+++|.|++|..||....
T Consensus       201 --------------------------~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~  254 (288)
T PF14531_consen  201 --------------------------CSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSS  254 (288)
T ss_dssp             --------------------------GGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCG
T ss_pred             --------------------------ccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCC
Confidence                                      01245779999987442        46889999999999999999999998754


Q ss_pred             hHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      .......      .+.....+|+.++.||..+|.+||++|
T Consensus       255 ~~~~~~~------~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  255 PEADPEW------DFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             GGSTSGG------GGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             ccccccc------cchhcCCcCHHHHHHHHHHccCCcccC
Confidence            3322111      233333689999999999999999988

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.90  E-value=6.2e-23  Score=186.62  Aligned_cols=143  Identities=20%  Similarity=0.177  Sum_probs=111.8

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-----------------------hHHHHHHHHHHHHHHc
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-----------------------NKESRARIEREILEML  143 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-----------------------~~~~~~~~E~~il~~l  143 (457)
                      .+.||+|+||+||+|.+.     +|+.||||+++.......                       ........|.+.+.++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-----~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l   76 (190)
T cd05145           2 NGCISTGKEANVYHARTG-----DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRL   76 (190)
T ss_pred             CceeecCCCcEEEEEEcC-----CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999864     689999999986522100                       0122345789999999


Q ss_pred             CCCCCceEEEEEEcCCcEEEEEeecCCCChHHH-HHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEE
Q 012762          144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL-RQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLV  221 (457)
Q Consensus       144 ~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~-~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll  221 (457)
                      .|++|.....+...  ..||||||++|+++... +..   ..+++..+..++.|++.+|.+||+ .||+||||||+|||+
T Consensus        77 ~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~---~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll  151 (190)
T cd05145          77 YEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLKD---VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILY  151 (190)
T ss_pred             HhCCCCCceEEEec--CCEEEEEEecCCCchhhhhhh---ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEE
Confidence            99987544443332  24899999988765332 332   567888999999999999999999 999999999999999


Q ss_pred             ccCCCEEEeccCCCcCCCC
Q 012762          222 RSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       222 ~~~~~vkl~DFG~s~~~~~  240 (457)
                      + ++.++|+|||++.....
T Consensus       152 ~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         152 H-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             E-CCCEEEEEcccceecCC
Confidence            8 88999999999877653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=3.9e-22  Score=179.96  Aligned_cols=201  Identities=21%  Similarity=0.190  Sum_probs=141.8

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-hHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLD-HPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~~  162 (457)
                      .+...|+.|+||+||++..      .+..++.+.+........ .....+.+|+++|++|+ |++|++++++    +..|
T Consensus         5 ~~~~~l~~~~f~~v~~~~~------~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~   74 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG------GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRH   74 (218)
T ss_pred             ccceeecCCCcceEEEeec------CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEE
Confidence            4567899999999997653      566777777654433211 12235788999999995 5889999986    3469


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecC-CCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDL-KPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDI-Kp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ++|||+.|.+|...+..        . ...++.|++.+|.++|++||+|||| ||+|||++.+|.++|+|||++......
T Consensus        75 lvmeyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~  145 (218)
T PRK12274         75 LDRSYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPR  145 (218)
T ss_pred             EEEeeecCccHHhhhhh--------h-hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCc
Confidence            99999999998643221        1 1347789999999999999999999 799999999999999999998754322


Q ss_pred             Ccccc-cccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          242 TSTAQ-LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       242 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..... +...+                                 ...+. +                        .-..+
T Consensus       146 ~~~~r~L~~rD---------------------------------l~~ll-k------------------------~~~~y  167 (218)
T PRK12274        146 ARWMRLLARED---------------------------------LRHLL-K------------------------HKRMY  167 (218)
T ss_pred             chHHHHHHHHH---------------------------------HHHHH-H------------------------HHHhc
Confidence            11000 00000                                 00000 0                        00126


Q ss_pred             CCCccCchhhcCC-CCC-ccchhhhhhHHHHHHhcCCCCCCCCC
Q 012762          321 THEYLAPEIISGE-GHG-NAVDWWTLGIFIFELFYGTTPFKGID  362 (457)
Q Consensus       321 t~~y~aPE~l~~~-~~~-~~sDiwSlG~il~elltG~~Pf~~~~  362 (457)
                      ++.|+.|+...-. ..+ .+.+.++.|+-+|.++|+..++.+..
T Consensus       168 ~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        168 CPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             CCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence            8888999876543 233 57788999999999999999987644

>PRK10345 hypothetical protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=176.57  Aligned_cols=134  Identities=20%  Similarity=0.267  Sum_probs=104.5

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-----CCCCCceEEEEEEcCC--
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-----DHPFLPTLYATLDCPR--  159 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-----~H~nIv~l~~~~~~~~--  159 (457)
                      .+.||+|+||.||.  +.    .++.. +||++.....   .....+.+|+++++.+     +||||+++++++.++.  
T Consensus         7 ~~~LG~G~~~~Vy~--hp----~~~~k-~IKv~~~~~~---~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~   76 (210)
T PRK10345          7 QSPLGTGRHRKCYA--HP----EDAQR-CIKIVYHRGD---GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGT   76 (210)
T ss_pred             cceecCCCceEEEE--CC----CCcCe-EEEEEecccc---chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCC
Confidence            46899999999994  33    24444 6898865422   2345688899999999     6799999999998873  


Q ss_pred             -cEE-EEEee--cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHH-HHHHHcCceeecCCCCCeEEccC----CCEEEe
Q 012762          160 -WSC-LLTEF--CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL-EFLHMMGIIYRDLKPENVLVRSD----GHIMLT  230 (457)
Q Consensus       160 -~~~-lV~E~--~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L-~yLH~~~iiHrDIKp~NIll~~~----~~vkl~  230 (457)
                       .++ +||||  +.+++|.++++.   ..+++.  ..++.|++.++ +|||+++||||||||+|||++..    +.++|+
T Consensus        77 g~v~~~I~e~~G~~~~tL~~~l~~---~~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~Li  151 (210)
T PRK10345         77 GYVYDVIADFDGKPSITLTEFAEQ---CRYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVC  151 (210)
T ss_pred             eEEEEEEecCCCCcchhHHHHHHc---ccccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEE
Confidence             444 78999  557999999976   346665  35678888888 99999999999999999999742    379999


Q ss_pred             ccCCC
Q 012762          231 DFDLS  235 (457)
Q Consensus       231 DFG~s  235 (457)
                      ||+-+
T Consensus       152 Dg~G~  156 (210)
T PRK10345        152 DNIGE  156 (210)
T ss_pred             ECCCC
Confidence            95443

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.4e-21  Score=209.39  Aligned_cols=199  Identities=25%  Similarity=0.352  Sum_probs=159.8

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC---CCCCceEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD---HPFLPTLYA  153 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~---H~nIv~l~~  153 (457)
                      ..+....|.|.+.||+|+||+||+|...     +|+.||+|+-+...      ..++..-.+++.+|+   -+.|+++..
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~~vy~a~~~-----~~~~~alK~e~P~~------~WEfYI~~q~~~RLk~~~~~~~~~~~~  761 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYGSVYVATHS-----NGKLVALKVEKPPN------PWEFYICLQVMERLKPQMLPSIMHISS  761 (974)
T ss_pred             eeecceeEEEEeeeccccceEEEEeecC-----CCcEEEEEeecCCC------ceeeeehHHHHHhhchhhhcchHHHHH
Confidence            3445568999999999999999999865     49999999976532      222333344555554   345677777


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-------CCC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-------DGH  226 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-------~~~  226 (457)
                      ++...+..+||+||.+.|+|-+++..  .+.+++..+..+..||+.-|+.||..+|||+||||+|+||..       ..-
T Consensus       762 a~~~~~~S~lv~ey~~~Gtlld~~N~--~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~  839 (974)
T KOG1166|consen  762 AHVFQNASVLVSEYSPYGTLLDLINT--NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKG  839 (974)
T ss_pred             HHccCCcceeeeeccccccHHHhhcc--CCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccc
Confidence            77777788999999999999999884  588999999999999999999999999999999999999953       225


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      ++|+|||.+..+.--..                                                               
T Consensus       840 l~lIDfG~siDm~lfp~---------------------------------------------------------------  856 (974)
T KOG1166|consen  840 LYLIDFGRSIDMKLFPD---------------------------------------------------------------  856 (974)
T ss_pred             eEEEecccceeeeEcCC---------------------------------------------------------------
Confidence            89999999865531110                                                               


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCC
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT  356 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~  356 (457)
                           ..+....++|-.+-++|+..|.+|++.+|.|.|+.+++-||.|++
T Consensus       857 -----~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  857 -----GTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             -----CcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence                 122334578999999999999999999999999999999999875

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=205.55  Aligned_cols=317  Identities=31%  Similarity=0.485  Sum_probs=236.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..+++.+.+-+-+|.|+.++.+.-.    ..|-..++|+..+............+.+..++-...||.++...-.+....
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa----~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rs  877 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPA----GSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRS  877 (1205)
T ss_pred             CCccceecccccCCCCcccccCCcc----ccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCC
Confidence            3456777778888999999977644    245556777766554444444555555666655567788887777777888


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..+|||+|+.+++|...++.-  +..+++.++.++..+.++++|||...++|||++|.|+|+..+|..++.|||......
T Consensus       878 P~~L~~~~~~~~~~~Skl~~~--~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg  955 (1205)
T KOG0606|consen  878 PLPLVGHYLNGGDLPSKLHNS--GCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVG  955 (1205)
T ss_pred             CcchhhHHhccCCchhhhhcC--CCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccc
Confidence            899999999999998888764  567888889999999999999999999999999999999999999999999543322


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      -......+.                      |.++...+.-       +....++..          .......+.....
T Consensus       956 ~~~p~~~~s----------------------g~~~~~~~~~-------~~~~~~~~~----------l~~~~~~~~~~~~  996 (1205)
T KOG0606|consen  956 LIPPTTDLS----------------------GPSSSGTPRR-------LSRSERRPQ----------LSADEARRKHAVV  996 (1205)
T ss_pred             cccCcCCcc----------------------cccccCcccc-------ccccccccc----------cccchhhcccccc
Confidence            111110000                      0000000000       000000000          0000112233567


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCC-CCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP-SVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~L~~d  398 (457)
                      ||+.|.+||.+.+...+..+|+|++|++++|.++|.+||.....+..+.++..+...++.-+ ..+..+++++...|..+
T Consensus       997 ~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~ 1076 (1205)
T KOG0606|consen  997 GTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEE 1076 (1205)
T ss_pred             CCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhhhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999888877643 46788999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      |.+|..+ .++.++..|+||+.++|..+....-+|+|++-+..|
T Consensus      1077 ~~qr~~a-~~~~e~k~~~~~~~~~~~~l~~q~~~~~p~~~s~~d 1119 (1205)
T KOG0606|consen 1077 PTQRLGA-KGAAEVKGHPFFQDVDWENLALQKAEFVPQPESTQD 1119 (1205)
T ss_pred             chhccCc-ccccccccCCccCCCCccccccccCccCCCCCCCCc
Confidence            9999982 234589999999999999999999999999976444

>smart00090 RIO RIO-like kinase

Probab=99.84  E-value=9.3e-21  Score=177.79  Aligned_cols=149  Identities=21%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             CceeEEEecccCcceEEEEE-EeccCCCCCceEEEEEeehhhhhhh---------------------hHHHHHHHHHHHH
Q 012762           83 DLRFVHRLGSGDIGSVYLVQ-LKSKSSNNGCFFAAKVMDKRELVSR---------------------NKESRARIEREIL  140 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~-~~~~~~~~~~~vAvK~~~~~~~~~~---------------------~~~~~~~~E~~il  140 (457)
                      .|.+.+.||+|+||.||+|. +.    .+|+.||+|++........                     .....+.+|.+++
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~----~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L  104 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFD----GSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNL  104 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecC----CCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHH
Confidence            48889999999999999998 33    3789999999975431100                     0123456799999


Q ss_pred             HHcCCCC--CceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-ceeecCCCC
Q 012762          141 EMLDHPF--LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG-IIYRDLKPE  217 (457)
Q Consensus       141 ~~l~H~n--Iv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~-iiHrDIKp~  217 (457)
                      +++.+.+  +.+++++   . ..+|||||++|++|..+....  ..+....+..++.||+.+|.+||+.| |+||||||+
T Consensus       105 ~~L~~~~i~~p~~~~~---~-~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~  178 (237)
T smart00090      105 QRLYEAGVPVPKPIAW---R-RNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEY  178 (237)
T ss_pred             HHHHhcCCCCCeeeEe---c-CceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChh
Confidence            9997533  4445543   2 358999999988886544222  44666677899999999999999999 999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCC
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ||+++ ++.++|+|||++.....+.
T Consensus       179 NIli~-~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      179 NILVH-DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             hEEEE-CCCEEEEEChhhhccCCcc
Confidence            99998 8899999999987665544

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=5.1e-21  Score=189.18  Aligned_cols=185  Identities=25%  Similarity=0.388  Sum_probs=137.1

Q ss_pred             CcEEEEEeecCCCChHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQ-PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .++|+.|++|.-.+|.+++.+. .....+......++.|+..|++|   +|.+|||+||.||+...+..+||+|||+...
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts  405 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTS  405 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheee
Confidence            3689999999999999999743 34456778889999999999999   9999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                ..+...+...
T Consensus       406 ~~~~~~----------------------------------------------------------------~~~~~a~~t~  421 (516)
T KOG1033|consen  406 QDKDET----------------------------------------------------------------VAPAAASHTQ  421 (516)
T ss_pred             cccCCc----------------------------------------------------------------ccchhhhhhh
Confidence            432110                                                                0001122234


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .+||..||+||.+.+..|+.++||||||+||+||+. -...|..   ...+..+.++.++....... +.-..|+++||.
T Consensus       422 ~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er---~~t~~d~r~g~ip~~~~~d~-p~e~~ll~~lls  497 (516)
T KOG1033|consen  422 QVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER---IATLTDIRDGIIPPEFLQDY-PEEYTLLQQLLS  497 (516)
T ss_pred             cccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH---HHhhhhhhcCCCChHHhhcC-cHHHHHHHHhcC
Confidence            579999999999999999999999999999999996 2333321   12233333333221111122 234689999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      ..|.+||+    +.+.-.|+|.
T Consensus       498 ~~p~~RP~----~~~~~~~~~~  515 (516)
T KOG1033|consen  498 PSPEERPS----AIEVALHEFL  515 (516)
T ss_pred             CCcccCch----HHHHhhhhhc
Confidence            99999998    7777777764

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=1.9e-19  Score=166.23  Aligned_cols=138  Identities=22%  Similarity=0.215  Sum_probs=113.1

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-----hhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-----VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-----~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      +.||+|++|.||+|.+      .|..+++|+......     .......++.+|++++..+.|++|.....++...+..+
T Consensus         2 ~~l~~G~~~~vy~~~~------~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~   75 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF------LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFI   75 (211)
T ss_pred             cccccCceEEEEEEee------CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCE
Confidence            5789999999999985      466789998653221     11122345778999999999999887777776777889


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +||||++|++|.+++....     . ....++.+++.+|.+||+.|++|+|++|.|||++ ++.++|+|||++...
T Consensus        76 lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         76 IVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             EEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            9999999999998886531     2 7788999999999999999999999999999998 789999999998653

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.81  E-value=3.3e-19  Score=163.15  Aligned_cols=134  Identities=22%  Similarity=0.231  Sum_probs=106.5

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-----hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-----SRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      .||+|+||+||+|.+      .+..+++|+.......     ......++.+|++++..+.|+++.....++......++
T Consensus         1 ~ig~G~~~~vy~~~~------~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~l   74 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF------LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTI   74 (199)
T ss_pred             CCCCCceEEEEEeec------CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE
Confidence            379999999999984      4567999986533211     12234667789999999998876555555555667789


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      ||||++|++|.+++....   .      .++.|++.+|.+||+.|++|+|++|.||+++ ++.++++|||++...
T Consensus        75 v~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        75 VMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             EEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            999999999988765521   1      7889999999999999999999999999998 889999999998654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.9e-21  Score=204.07  Aligned_cols=263  Identities=22%  Similarity=0.348  Sum_probs=204.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~  161 (457)
                      .|.+.+.||+|+|+.|-++....   .....+|.|.+.... ...........|..+-+.+. |.|++++++.....+..
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~---~~~~~~a~~~~s~~~-~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~   96 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSR---DPESSSATKPISIPP-KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSY   96 (601)
T ss_pred             cccccccccccccchhhhhhhcC---CCcceeeccCCCCCC-CccchhhhcCccccccccccccccccccCCccCCCccc
Confidence            57788889999999998876532   345567777765443 23344555566888888886 99999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceeecCCCCCeEEccCC-CEEEeccCCCcCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKGD  239 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~~  239 (457)
                      +++++|..|+++...+........+...+..++.|+..+|.|+| ..++.||||||+|.+++..+ .+++.|||+|....
T Consensus        97 ~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~  176 (601)
T KOG0590|consen   97 LLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYR  176 (601)
T ss_pred             ccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccc
Confidence            99999999999987763222226777888899999999999999 99999999999999999999 99999999986654


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ......                                                                   ......+
T Consensus       177 ~~~g~~-------------------------------------------------------------------~~~~~~~  189 (601)
T KOG0590|consen  177 NKNGAE-------------------------------------------------------------------RSLKDRC  189 (601)
T ss_pred             ccCCcc-------------------------------------------------------------------eeeeccc
Confidence            311100                                                                   0111236


Q ss_pred             C-CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHH-HHHHHhc--ccCCCCCCCCChHHHHHHHHH
Q 012762          320 G-THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-LANVVAR--ALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       320 g-t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      | ++.|+|||...+.. .....|+||.|+++.-+++|..|+........ +......  ......+..++....+++.++
T Consensus       190 g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~  269 (601)
T KOG0590|consen  190 GSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKI  269 (601)
T ss_pred             CCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhccccc
Confidence            7 99999999999864 47899999999999999999999976554331 1111111  112334456788899999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |..+|+.|.+    +.++..++|+..
T Consensus       270 l~~~~~~r~s----~~~~~~d~~~~~  291 (601)
T KOG0590|consen  270 LKENPSNRLS----IEELKLDNWLSS  291 (601)
T ss_pred             ccCCchhccc----cccccccccccc
Confidence            9999999999    999999999987

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.81  E-value=2e-19  Score=164.60  Aligned_cols=140  Identities=22%  Similarity=0.202  Sum_probs=108.9

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-------------------hHHHHHHHHHHHHHHcC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-------------------NKESRARIEREILEMLD  144 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-------------------~~~~~~~~E~~il~~l~  144 (457)
                      |.+.+.||+|+||.||+|.+.     +|+.||||++........                   ........|..++..+.
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~   91 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-----DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALY   91 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-----CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHH
Confidence            778899999999999999864     688999999765321000                   01123567888899998


Q ss_pred             CCC--CceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          145 HPF--LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       145 H~n--Iv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      |.+  ++.+++.    ...++||||++|++|..+...        .....++.+|+.++.++|+.||+|+||||+||+++
T Consensus        92 ~~~i~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~  159 (198)
T cd05144          92 EEGFPVPKPIDW----NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVD  159 (198)
T ss_pred             HcCCCCCceeec----CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEc
Confidence            774  5555542    345899999999999765321        34567889999999999999999999999999999


Q ss_pred             cCCCEEEeccCCCcCCCC
Q 012762          223 SDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~~~  240 (457)
                      .++.++|+|||++.....
T Consensus       160 ~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         160 DDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCcEEEEECCccccCCC
Confidence            999999999999866554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.80  E-value=5.6e-19  Score=185.57  Aligned_cols=140  Identities=24%  Similarity=0.223  Sum_probs=111.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhh-----hhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE-----LVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~-----~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .|...+.||+|+||+||+|.+.      +..+++|+.....     ........++.+|+++++.++|++|+....++..
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~------~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~  407 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYL------GRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD  407 (535)
T ss_pred             ccCccceeccCCcEEEEEEeec------CccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe
Confidence            3466889999999999999864      2234444322211     1112234567889999999999999988877777


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ....++||||++|++|.+++.          ....++.|++.+|.|||+.||+||||||+|||+ .++.++|+|||+++.
T Consensus       408 ~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        408 PEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            778899999999999988765          346788999999999999999999999999999 678899999999876


Q ss_pred             CC
Q 012762          238 GD  239 (457)
Q Consensus       238 ~~  239 (457)
                      ..
T Consensus       477 ~~  478 (535)
T PRK09605        477 SD  478 (535)
T ss_pred             CC
Confidence            54

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.76  E-value=4.1e-18  Score=154.32  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHH---------------------HHHHHHHHHHHcCC
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---------------------RARIEREILEMLDH  145 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~---------------------~~~~E~~il~~l~H  145 (457)
                      .+.||+|+||+||+|.+.     +++.||||++............                     ....|.+.+..+.+
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-----~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~   76 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-----DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYE   76 (187)
T ss_pred             CcccccccceeEEEEECC-----CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHH
Confidence            467999999999999864     6789999998754322111111                     11346666666654


Q ss_pred             C--CCceEEEEEEcCCcEEEEEeecCCCChHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEE
Q 012762          146 P--FLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLV  221 (457)
Q Consensus       146 ~--nIv~l~~~~~~~~~~~lV~E~~~~~sL~~-~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll  221 (457)
                      .  .+.+.+++    ...++||||++++.+.. .+...   ... ..++.++.+++.++.++|. .||+|+||||+||++
T Consensus        77 ~~~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~---~~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili  148 (187)
T cd05119          77 AGVPVPKPIDL----NRHVLVMEFIGGDGIPAPRLKDV---RLL-EDPEELYDQILELMRKLYREAGLVHGDLSEYNILV  148 (187)
T ss_pred             cCCCCCceEec----CCCEEEEEEeCCCCccChhhhhh---hhc-ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEE
Confidence            3  35555554    23589999998854421 11111   011 5678899999999999999 999999999999999


Q ss_pred             ccCCCEEEeccCCCcCCCC
Q 012762          222 RSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       222 ~~~~~vkl~DFG~s~~~~~  240 (457)
                      + ++.++|+|||.+.....
T Consensus       149 ~-~~~~~liDfg~a~~~~~  166 (187)
T cd05119         149 D-DGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             E-CCcEEEEECcccccccC
Confidence            9 89999999999876654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.75  E-value=4.3e-18  Score=171.41  Aligned_cols=200  Identities=22%  Similarity=0.290  Sum_probs=151.9

Q ss_pred             HHHcCCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCc-eeecCCCCC
Q 012762          140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI-IYRDLKPEN  218 (457)
Q Consensus       140 l~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~i-iHrDIKp~N  218 (457)
                      |+.+.|.|+.+++|.+.++...++|.+||..|+|.+.+... .-.++......++++|+.||.|||.--| .|+.++..|
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~-~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~n   79 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE-DIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSN   79 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc-ccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccc
Confidence            45689999999999999999999999999999999998873 4668888899999999999999997655 999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ++++....+||+|||+..........                                                      
T Consensus        80 Clvd~~w~lklt~~Gl~~~~~~~~~~------------------------------------------------------  105 (484)
T KOG1023|consen   80 CLVDSRWVLKLTDFGLNSLLEETAEP------------------------------------------------------  105 (484)
T ss_pred             ceeeeeEEEEechhhhcccccccccc------------------------------------------------------
Confidence            99999999999999996544320000                                                      


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCC-------CCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHH
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG-------HGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTL  367 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-------~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~  367 (457)
                              ...      ....-...|.|||.+.+..       .+.+.||||||++++|+++..-||.....    .+..
T Consensus       106 --------~~~------~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii  171 (484)
T KOG1023|consen  106 --------EAH------HPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEII  171 (484)
T ss_pred             --------ccc------chhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHH
Confidence                    000      0011345799999998742       35679999999999999999999976322    1233


Q ss_pred             HHHHhcccC--CCC---CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHH
Q 012762          368 ANVVARALE--FPK---EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       368 ~~~~~~~~~--~~~---~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~l  412 (457)
                      ..+......  .|.   ...+++++..+++.||..+|++||+    ++++
T Consensus       172 ~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs----~~~i  217 (484)
T KOG1023|consen  172 LRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPS----IEQI  217 (484)
T ss_pred             HHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCcc----HHHH
Confidence            332221111  111   1145567999999999999999999    6655

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.75  E-value=2.1e-17  Score=155.37  Aligned_cols=139  Identities=24%  Similarity=0.300  Sum_probs=106.1

Q ss_pred             EEec-ccCcceEEEEEEeccCCCCCceEEEEEeehhhhh----------hhhHHHHHHHHHHHHHHcCCCCC--ceEEEE
Q 012762           88 HRLG-SGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV----------SRNKESRARIEREILEMLDHPFL--PTLYAT  154 (457)
Q Consensus        88 ~~LG-~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~----------~~~~~~~~~~E~~il~~l~H~nI--v~l~~~  154 (457)
                      ..|| .|+.|+||.+..      .+..+|||.+......          ......++.+|.+++..|.|++|  +..+++
T Consensus        37 ~~lg~~~g~gtv~~v~~------~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~  110 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT------PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAA  110 (239)
T ss_pred             ceeecCCCCccEEEEEe------CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEee
Confidence            4577 788889988874      4678999988643221          11234567889999999998775  677776


Q ss_pred             EEcCC-c---EEEEEeecCC-CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEE
Q 012762          155 LDCPR-W---SCLLTEFCPG-GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       155 ~~~~~-~---~~lV~E~~~~-~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl  229 (457)
                      ..... .   .+||||+++| .+|.+++..   ..+++..    +.||+.+|.+||+.||+||||||+|||++.++.++|
T Consensus       111 ~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~---~~l~~~~----~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~L  183 (239)
T PRK01723        111 RVVRHGLFYRADILIERIEGARDLVALLQE---APLSEEQ----WQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWL  183 (239)
T ss_pred             eeeecCcceeeeEEEEecCCCCCHHHHHhc---CCCCHHH----HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEE
Confidence            54322 2   3599999987 689888765   3455543    578999999999999999999999999998899999


Q ss_pred             eccCCCcCCC
Q 012762          230 TDFDLSLKGD  239 (457)
Q Consensus       230 ~DFG~s~~~~  239 (457)
                      +|||.+....
T Consensus       184 IDfg~~~~~~  193 (239)
T PRK01723        184 IDFDRGELRT  193 (239)
T ss_pred             EECCCcccCC
Confidence            9999986643

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.70  E-value=1.1e-16  Score=138.51  Aligned_cols=134  Identities=26%  Similarity=0.343  Sum_probs=112.0

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEEEEcCCcEEE
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~~~~~~~~~l  163 (457)
                      +++.||.|.++.||++...      +..+++|+......     ...+..|..+++.+.|  .++++++.++...+..++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~------~~~~~iK~~~~~~~-----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~   70 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK------DEDYVLKINPSREK-----GADREREVAILQLLARKGLPVPKVLASGESDGWSYL   70 (155)
T ss_pred             cceecccccccceEEEEec------CCeEEEEecCCCCc-----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEE
Confidence            4578999999999999863      36799999865421     4567789999999976  589999999988888999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc---CceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      +|||+.|+.+..+         +......++.+++.+|.+||..   +++|+||+|+||+++..+.++++|||.+....
T Consensus        71 v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120          71 LMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             EEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCCC
Confidence            9999988877543         4556677889999999999985   79999999999999988999999999986543

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.4e-16  Score=160.67  Aligned_cols=264  Identities=22%  Similarity=0.206  Sum_probs=193.1

Q ss_pred             cCCCceeEEEecc--cCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           80 TLSDLRFVHRLGS--GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        80 ~~~~~~~~~~LG~--G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      ....+.+...+|.  |.+|.||.+...+  ...+..+|+|.-+. .........+-.+|..-.+++ .|+|.++.+..+.
T Consensus       112 ~~~~~~~~~~~g~~~g~~~s~~~~~~~~--~~s~~~~a~k~s~~-p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e  188 (524)
T KOG0601|consen  112 FDQRFPISSRTGSLPGSKGSVFKSRCTN--SESPHKFAVKKSKI-PFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWE  188 (524)
T ss_pred             hhhhcccccccccCCCCCceeecccCCc--ccCCcccccccccC-CCCCccccccccchhhcccccCccccccccCcccc
Confidence            3345778889999  9999999887632  24777899887432 122223333444566666666 4999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHH----HHHHHHHcCceeecCCCCCeEEccC-CCEEEec
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV----ALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTD  231 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~----~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~D  231 (457)
                      ..+..|+-+|+| +.+|..+.... ..-++...++..+.++..    ||..+|+.+++|-|+||+||++..+ ..++++|
T Consensus       189 ~~~~lfiqtE~~-~~sl~~~~~~~-~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  189 GSGILFIQTELC-GESLQSYCHTP-CNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             cCCcceeeeccc-cchhHHhhhcc-cccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCC
Confidence            999999999999 78887776653 345888999999999999    9999999999999999999999999 8899999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+...+.+........                                                               
T Consensus       267 f~~v~~i~~~~~~~~~~---------------------------------------------------------------  283 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFK---------------------------------------------------------------  283 (524)
T ss_pred             cceeEEccCCcccccee---------------------------------------------------------------
Confidence            99987665433211100                                                               


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC--ChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI--DHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                        ....--|...|++||.+++. ++...|||++|.++.+..+|..+....  ..-..+.+   ..+........+.++..
T Consensus       284 --~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~---~~ip~e~~~~~s~~l~~  357 (524)
T KOG0601|consen  284 --VSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ---GYIPLEFCEGGSSSLRS  357 (524)
T ss_pred             --eeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccCCCCCCcccccc---ccCchhhhcCcchhhhh
Confidence              00011377789999999866 788999999999999999877655332  11111111   01111112234456667


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .+..|+..+|-.|++    ++.+++|++....
T Consensus       358 ~~~~~~d~~~~~~~~----~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  358 VTSQMLDEDPRLRLT----AQILTALNVIHSK  385 (524)
T ss_pred             HHHHhcCcchhhhhH----HHHHhccccccch
Confidence            999999999999999    9999999998764

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.58  E-value=1.1e-14  Score=148.53  Aligned_cols=144  Identities=21%  Similarity=0.173  Sum_probs=98.2

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh---hh----------------------------------HH
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS---RN----------------------------------KE  130 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~---~~----------------------------------~~  130 (457)
                      +.||.|++|+||+|+.+     +|+.||||+.+..-...   +.                                  .+
T Consensus       123 ~plasaSigQVh~A~l~-----~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV-----DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             cceeeeehhheEEEEec-----CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            57999999999999975     78999999986531100   00                                  00


Q ss_pred             HHHHHHHHHHHHc----CCCCCceEEEEE-EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHH-HHHHH
Q 012762          131 SRARIEREILEML----DHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV-ALEFL  204 (457)
Q Consensus       131 ~~~~~E~~il~~l----~H~nIv~l~~~~-~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~-~L~yL  204 (457)
                      -.+.+|.+.+.++    .|.+-+.+-.++ ......+|||||++|++|.++..... ....   ...++.+++. .+..+
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~-~~~~---~~~ia~~~~~~~l~ql  273 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDE-AGLD---RKALAENLARSFLNQV  273 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHh-cCCC---HHHHHHHHHHHHHHHH
Confidence            1233455555444    233333333332 22345689999999999987765421 1222   2345555555 47889


Q ss_pred             HHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       205 H~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |..|++|+|+||.||+++.+|.++++|||++....+
T Consensus       274 ~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       274 LRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HhCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            999999999999999999999999999999877653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.53  E-value=1.4e-13  Score=140.52  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHH
Q 012762          109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES  188 (457)
Q Consensus       109 ~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~  188 (457)
                      ..+..|.|.+.+...-   .......+-++-|+.|+||||+++++.++.++..|||+|-+  ..|...+++     +...
T Consensus        35 ~~~~~vsVF~~~~~~~---~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~-----l~~~  104 (690)
T KOG1243|consen   35 ADGGPVSVFVYKRSNG---EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKE-----LGKE  104 (690)
T ss_pred             ccCCceEEEEEeCCCc---hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHH-----hHHH
Confidence            3677788887765422   23444566777899999999999999999999999999998  466666666     3366


Q ss_pred             HHHHHHHHHHHHHHHHH-HcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          189 AVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       189 ~~~~i~~qi~~~L~yLH-~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .+..-+.||+.||.||| +.+++|++|.-+-|+|+..|..||++|.++.
T Consensus       105 ~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~  153 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVS  153 (690)
T ss_pred             HHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEe
Confidence            67777899999999998 6789999999999999999999999998764

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.53  E-value=9.8e-15  Score=150.79  Aligned_cols=147  Identities=19%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-------------------------------hhHH
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-------------------------------RNKE  130 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-------------------------------~~~~  130 (457)
                      .+|.. +.||+|++|+||+|+++.    +|+.||||+.++.-...                               +...
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~----~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~  194 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKD----NGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFE  194 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECC----CCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHH
Confidence            45665 789999999999999872    58999999997542100                               0111


Q ss_pred             HH------HHHHHHHHHHc----CCCCCceEEEEEE-cCCcEEEEEeecCCCChHHHHHhCCCC----CCCHHHHHHHHH
Q 012762          131 SR------ARIEREILEML----DHPFLPTLYATLD-CPRWSCLLTEFCPGGDLHVLRQRQPDK----RFHESAVRFYAS  195 (457)
Q Consensus       131 ~~------~~~E~~il~~l----~H~nIv~l~~~~~-~~~~~~lV~E~~~~~sL~~~~~~~~~~----~~~~~~~~~i~~  195 (457)
                      ..      +.+|...+.++    .+.+.+.+-.++. .....+|||||++|+.|.++......+    .+.+..+..++.
T Consensus       195 ~~l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~  274 (537)
T PRK04750        195 KTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFT  274 (537)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            11      23344333333    2444444444442 245678999999999997643221112    244444455555


Q ss_pred             HHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccCCCcCCCC
Q 012762          196 EVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDN  240 (457)
Q Consensus       196 qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG~s~~~~~  240 (457)
                      |++       ..|++|+|+||.||+++.+|    .++++|||++..+..
T Consensus       275 Qif-------~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        275 QVF-------RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHH-------hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            554       58999999999999999888    999999999876654

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.1e-14  Score=144.99  Aligned_cols=252  Identities=20%  Similarity=0.250  Sum_probs=183.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~  158 (457)
                      ...+|.++..||.|.|+.|+.+..+.   .++..|++|-..+......... .-..|+-+...+ .|.+++.++..+...
T Consensus       263 ~~~df~~v~~i~~~~~~~~~~~~~r~---~~~~~Y~~ke~~~~l~~~~~di-~sl~ev~l~~~l~~~~~~~g~~~~W~~~  338 (524)
T KOG0601|consen  263 KLTDFGLVSKISDGNFSSVFKVSKRP---EGDCIYAAKELLNGLATFASDI-FSLGEVILEAILGSHLPSVGKNSSWSQL  338 (524)
T ss_pred             ecCCcceeEEccCCccccceeeeecC---CCCceEeChhhhccccchHhhh-cchhhhhHhhHhhcccccCCCCCCcccc
Confidence            44678999999999999999877332   4788999998866544333322 233466666666 599999999988888


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~s~~  237 (457)
                      +..|+-.|||+++++...+..  ...+.+...+.+..|++.++.++|+..++|+|+||+||++..+ +..+++|||+...
T Consensus       339 r~~~ip~e~~~~~s~~l~~~~--~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  339 RQGYIPLEFCEGGSSSLRSVT--SQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             ccccCchhhhcCcchhhhhHH--HHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccc
Confidence            888999999999998654422  2457788889999999999999999999999999999999886 7889999998632


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      +.                                                                         ...+.
T Consensus       417 ~~-------------------------------------------------------------------------~~~~~  423 (524)
T KOG0601|consen  417 LA-------------------------------------------------------------------------FSSGV  423 (524)
T ss_pred             cc-------------------------------------------------------------------------eeccc
Confidence            11                                                                         01112


Q ss_pred             ccCCCCcc--CchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYL--APEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~--aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      +.+...++  +++.+....+..+.|++|||..+.+.++|...-....   ....+..+  ..+..+....++..+.+.++
T Consensus       424 ~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~---~~~~i~~~--~~p~~~~~~~~~q~~~kv~~  498 (524)
T KOG0601|consen  424 FHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV---QSLTIRSG--DTPNLPGLKLQLQVLLKVMI  498 (524)
T ss_pred             ccccccccccchhhccccccccccccccccccccccccCcccCcccc---cceeeecc--cccCCCchHHhhhhhhhhhc
Confidence            23444455  4444455668899999999999999999876433221   11222222  23333344578899999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      ..|+..|+.    +.++..|.=|.
T Consensus       499 ~~~~~~~~l----~~~l~~~~~~~  518 (524)
T KOG0601|consen  499 NPDRKRRPS----AVELSLHSEFY  518 (524)
T ss_pred             CCccccchh----hhhhcccchhh
Confidence            999999999    88887775443

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.49  E-value=1.5e-13  Score=122.13  Aligned_cols=130  Identities=22%  Similarity=0.253  Sum_probs=96.9

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEEEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSCLLT  165 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~lV~  165 (457)
                      ++.|+.|.++.||+++.      .+..|++|+......    ....+..|.++++.+.+.++ .+++.+..  ...++||
T Consensus         3 ~~~l~~G~~~~vy~~~~------~~~~~~lK~~~~~~~----~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~~~~lv~   70 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV------ANKKYVVRIPGNGTE----LLINRENEAENSKLAAEAGIGPKLYYFDP--ETGVLIT   70 (170)
T ss_pred             eeecCCcccCceEEEEE------CCeEEEEEeCCCCcc----cccCHHHHHHHHHHHHHhCCCCceEEEeC--CCCeEEE
Confidence            46789999999999875      366899999754321    12235679999998865554 45555543  3357999


Q ss_pred             eecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCc-----eeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          166 EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI-----IYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       166 E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~i-----iHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ||++|.++...          ......++.+++.+|..||..++     +|+|++|.||+++ ++.++++|||.+....
T Consensus        71 e~i~G~~l~~~----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~  138 (170)
T cd05151          71 EFIEGSELLTE----------DFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMND  138 (170)
T ss_pred             EecCCCccccc----------cccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCCC
Confidence            99999888532          01123456799999999999885     9999999999998 6789999999976543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.48  E-value=8e-13  Score=119.35  Aligned_cols=146  Identities=16%  Similarity=0.131  Sum_probs=103.5

Q ss_pred             EEEecccCcceEEEEEEecc--CCCCCceEEEEEeehhhhh-------------------hhhHHHHHH----HHHHHHH
Q 012762           87 VHRLGSGDIGSVYLVQLKSK--SSNNGCFFAAKVMDKRELV-------------------SRNKESRAR----IEREILE  141 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~--~~~~~~~vAvK~~~~~~~~-------------------~~~~~~~~~----~E~~il~  141 (457)
                      ...||.|-=+.||.|.....  ....+..+|||+.+.....                   ..+....+.    +|.+.|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            35789999999999974310  0113578999998432110                   011122333    7899999


Q ss_pred             HcC--CCCCceEEEEEEcCCcEEEEEeecCCCChH-HHHHhCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCceeecCCCC
Q 012762          142 MLD--HPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFL-HMMGIIYRDLKPE  217 (457)
Q Consensus       142 ~l~--H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~-~~~~~~~~~~~~~~~~~~i~~qi~~~L~yL-H~~~iiHrDIKp~  217 (457)
                      +|.  .-++...+++    ...+|||||+.++.+. ..++.   ..+++..+..+..|++.+|..| |..||||+||++.
T Consensus        82 rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd---~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~  154 (197)
T cd05146          82 RMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD---AKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEY  154 (197)
T ss_pred             HHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc---cccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHH
Confidence            984  4677788875    3567999999665442 12222   3456667778889999999999 8999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCC
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |||+. ++.+.|+|||.+.....
T Consensus       155 NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         155 NMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             HEEEE-CCcEEEEECCCceeCCC
Confidence            99996 57899999999876653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.47  E-value=6.5e-14  Score=131.24  Aligned_cols=207  Identities=18%  Similarity=0.251  Sum_probs=144.6

Q ss_pred             HHHcCCCCCceEEEEEEcCC-----cEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcC--ce
Q 012762          140 LEMLDHPFLPTLYATLDCPR-----WSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMG--II  210 (457)
Q Consensus       140 l~~l~H~nIv~l~~~~~~~~-----~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~--ii  210 (457)
                      |-.+.|-|||+++.|+.+.+     ...++.||+.-|+|..++++.+  ...+.....++|+.||+.||.|||+..  |+
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppii  200 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPII  200 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccc
Confidence            44567999999999986544     4688999999999999888742  356888899999999999999999885  99


Q ss_pred             eecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          211 YRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       211 HrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      |+++..+-|++..+|-+|++--......                                                   +
T Consensus       201 hgnlTc~tifiq~ngLIkig~~ap~s~h---------------------------------------------------~  229 (458)
T KOG1266|consen  201 HGNLTCDTIFIQHNGLIKIGSVAPDSTH---------------------------------------------------P  229 (458)
T ss_pred             cCCcchhheeecCCceEEecccCccccc---------------------------------------------------h
Confidence            9999999999998888887532211000                                                   0


Q ss_pred             chhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCC-CCCChHHHHHH
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF-KGIDHELTLAN  369 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf-~~~~~~~~~~~  369 (457)
                      ..+...               ......-.|-++|.+||.=.-...+-++|||+||....||..|..-- .+.+.......
T Consensus       230 s~~~~~---------------~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~  294 (458)
T KOG1266|consen  230 SVNSTR---------------EAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEEN  294 (458)
T ss_pred             hhhhhh---------------HhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcceeehhhh
Confidence            000000               00000113677899998765555677999999999999999887542 22222222222


Q ss_pred             HHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          370 VVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      +....+.+..     +--++++.+||+-.|..||+    +.+++.||.+=.+
T Consensus       295 ia~~i~~len-----~lqr~~i~kcl~~eP~~rp~----ar~llfHpllfeV  337 (458)
T KOG1266|consen  295 IANVIIGLEN-----GLQRGSITKCLEGEPNGRPD----ARLLLFHPLLFEV  337 (458)
T ss_pred             hhhheeeccC-----ccccCcCcccccCCCCCCcc----hhhhhcCceeeec
Confidence            2222221111     12357899999999999999    9999999986554

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=107.13  Aligned_cols=145  Identities=21%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehh-----hhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR-----ELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~-----~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .+..|-+|+=+.|+++.+      .|+...||.--.+     .+...-...+..+|+++|.++.--.|.--.-+|.+...
T Consensus        11 ~l~likQGAEArv~~~~~------~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~   84 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF------SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYG   84 (229)
T ss_pred             cceeeeccceeeEeeecc------CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCC
Confidence            567888999999999886      5677666643222     22222334667789999999865565444445555566


Q ss_pred             EEEEEeecCC-CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEeccCCCc
Q 012762          161 SCLLTEFCPG-GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDFDLSL  236 (457)
Q Consensus       161 ~~lV~E~~~~-~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~DFG~s~  236 (457)
                      -+|+|||++| .++.+++...............++.+|-+.|.-||..+|||+||..+||+|..+|   .+.++|||++.
T Consensus        85 ~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   85 GQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             CeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            7899999966 3677777665444455555578999999999999999999999999999998776   35899999974

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.34  E-value=1.5e-11  Score=107.72  Aligned_cols=134  Identities=21%  Similarity=0.205  Sum_probs=97.2

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-----hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-----SRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      .+++|+=+.||++.+.      |..+++|.-.++...     ..-...+-.+|.++|.++.--.|.--+=++.+.....|
T Consensus         3 ~i~~GAEa~i~~~~~~------g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I   76 (204)
T COG3642           3 LIKQGAEAIIYLTDFL------GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLI   76 (204)
T ss_pred             hhhCCcceeEEeeecc------CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEE
Confidence            5788999999988764      334666654333222     22234556779999998865454433334445566779


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +|||++|..|.+++...         ...+++.+-.-+.-||..||||+||.+.||++..++ +.++|||++..-
T Consensus        77 ~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          77 VMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             EEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            99999999998888763         145667777888889999999999999999997665 999999998643

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.29  E-value=2e-11  Score=113.18  Aligned_cols=142  Identities=21%  Similarity=0.250  Sum_probs=105.4

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEEEEcC---CcEE
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYATLDCP---RWSC  162 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~~~~~---~~~~  162 (457)
                      +.||.|.++.||+++..     +|..|++|+.......  .....+..|.++++.+.+  .++.+++.+....   +..+
T Consensus         4 ~~l~~G~~n~~~~v~~~-----~g~~~ilK~~~~~~~~--~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~   76 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG-----GGRRLVLRRPPPGALL--PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPF   76 (223)
T ss_pred             eecCCCccceEEEEEec-----CCcceEEEeCCCcccC--cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCce
Confidence            57899999999999863     3578999998654321  124457789999999965  4467788877654   3678


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM------------------------------------  206 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~------------------------------------  206 (457)
                      +||||++|.+|...+..   ..+++.....++.+++..|..||+                                    
T Consensus        77 ~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (223)
T cd05154          77 YVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDE  153 (223)
T ss_pred             EEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccc
Confidence            99999999988654321   235666666777777777777773                                    


Q ss_pred             --------------------cCceeecCCCCCeEEcc--CCCEEEeccCCCcCCC
Q 012762          207 --------------------MGIIYRDLKPENVLVRS--DGHIMLTDFDLSLKGD  239 (457)
Q Consensus       207 --------------------~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~~~  239 (457)
                                          ..++|+|+++.||+++.  ++.+.|+||+.+....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~  208 (223)
T cd05154         154 PPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGD  208 (223)
T ss_pred             cHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccCC
Confidence                                24699999999999988  5678999999876543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.28  E-value=8e-12  Score=128.19  Aligned_cols=167  Identities=22%  Similarity=0.354  Sum_probs=120.0

Q ss_pred             HHHHHHHHHH-HcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012762          196 EVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSS  274 (457)
Q Consensus       196 qi~~~L~yLH-~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (457)
                      ++..||.|+| +.++||++|.|++|+++..|..||+.|+++....+....                              
T Consensus       107 ~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~------------------------------  156 (700)
T KOG2137|consen  107 NVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEY------------------------------  156 (700)
T ss_pred             cccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCcc------------------------------
Confidence            4459999999 558999999999999999999999999987544322110                              


Q ss_pred             cccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc-cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHh-
Q 012762          275 CIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM-SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-  352 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ell-  352 (457)
                                                      ....-+.+.. ...-...|.|||++.+...+.++|+||+||++|.+. 
T Consensus       157 --------------------------------p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~  204 (700)
T KOG2137|consen  157 --------------------------------PFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYN  204 (700)
T ss_pred             --------------------------------ccccCCCCCChhhccCcccccchhhccccccccccceeeeeEEEEEec
Confidence                                            0000000000 112456899999999988899999999999999999 


Q ss_pred             cCCCCCCCCChHHHH--HHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhc
Q 012762          353 YGTTPFKGIDHELTL--ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC  428 (457)
Q Consensus       353 tG~~Pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~  428 (457)
                      .|+..+........+  .........+-....+|.++++-|.++|..|+..||+    +.+++..+||.+..-..|+.
T Consensus       205 ~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~----~~~l~~~~ff~D~~~~aLrf  278 (700)
T KOG2137|consen  205 GGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPT----LDLLLSIPFFSDPGLKALRF  278 (700)
T ss_pred             CCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcc----hhhhhcccccCCchhhhhhh
Confidence            566666544322222  1222222223334679999999999999999999999    99999999999866555543

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.18  E-value=8e-10  Score=105.28  Aligned_cols=128  Identities=17%  Similarity=0.013  Sum_probs=93.0

Q ss_pred             CCceEEEEEeehhhhhh---h-----hHHHHHHHHHHHHHHcC--CCCCceEEEEEEc-----CCcEEEEEeecCCC-Ch
Q 012762          110 NGCFFAAKVMDKRELVS---R-----NKESRARIEREILEMLD--HPFLPTLYATLDC-----PRWSCLLTEFCPGG-DL  173 (457)
Q Consensus       110 ~~~~vAvK~~~~~~~~~---~-----~~~~~~~~E~~il~~l~--H~nIv~l~~~~~~-----~~~~~lV~E~~~~~-sL  173 (457)
                      .|+.|.||.........   .     .....+.+|.+.+.+|.  .-.++..++++..     ....+||||++++. +|
T Consensus        44 ~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL  123 (268)
T PRK15123         44 AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISL  123 (268)
T ss_pred             CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccH
Confidence            56678888764332110   0     11123677888888884  3344556666643     23468999999775 79


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-------CCCEEEeccCCCcC
Q 012762          174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-------DGHIMLTDFDLSLK  237 (457)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-------~~~vkl~DFG~s~~  237 (457)
                      .+++...............++.+++..+.-||..||+|+|+++.|||++.       ++.+.|+||+.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        124 EDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            88876433345667788899999999999999999999999999999975       46899999998754

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.18  E-value=1.9e-10  Score=103.51  Aligned_cols=129  Identities=21%  Similarity=0.245  Sum_probs=85.1

Q ss_pred             eEEEEEEeccCCCCCceEEEEEeehhhhh-----------------------hhhHHHHHHHHHHHHHHcCCC--CCceE
Q 012762           97 SVYLVQLKSKSSNNGCFFAAKVMDKRELV-----------------------SRNKESRARIEREILEMLDHP--FLPTL  151 (457)
Q Consensus        97 ~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----------------------~~~~~~~~~~E~~il~~l~H~--nIv~l  151 (457)
                      .||.|...     .|..+|+|+.+.....                       ........++|.+.|.++..-  ++.+.
T Consensus         1 ~Vy~~~~~-----~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p   75 (188)
T PF01163_consen    1 DVYHAIDP-----DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKP   75 (188)
T ss_dssp             EEEEEEEC-----TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--E
T ss_pred             CEEEEECC-----CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcE
Confidence            48888764     6789999997432111                       111235567799999999755  56777


Q ss_pred             EEEEEcCCcEEEEEeecC--CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCceeecCCCCCeEEccCCCEE
Q 012762          152 YATLDCPRWSCLLTEFCP--GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF-LHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~~--~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~y-LH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      +++.    ..+|||||++  |..+..+....    +.......++.+++..+.. +|..||||+||.+.|||++.+ .+.
T Consensus        76 ~~~~----~~~ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~  146 (188)
T PF01163_consen   76 YDYN----RNVIVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVY  146 (188)
T ss_dssp             EEEE----TTEEEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEE
T ss_pred             EEEe----CCEEEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEE
Confidence            7653    3469999998  66665544432    2244566777888886665 579999999999999999876 899


Q ss_pred             EeccCCCcCCC
Q 012762          229 LTDFDLSLKGD  239 (457)
Q Consensus       229 l~DFG~s~~~~  239 (457)
                      |+|||.+....
T Consensus       147 iIDf~qav~~~  157 (188)
T PF01163_consen  147 IIDFGQAVDSS  157 (188)
T ss_dssp             E--GTTEEETT
T ss_pred             EEecCcceecC
Confidence            99999986654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.07  E-value=5.7e-09  Score=104.06  Aligned_cols=134  Identities=18%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             cceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----CCcEEEEEeecCC
Q 012762           95 IGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----PRWSCLLTEFCPG  170 (457)
Q Consensus        95 fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----~~~~~lV~E~~~~  170 (457)
                      -.+.|+|+..    .+|..|++|++...+.....+   ...-+++++++.|.|||++.++|..    +..+++|++|+++
T Consensus       289 ~~Ttyk~~s~----~DG~~YvLkRlhg~r~~~~nk---~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~  361 (655)
T KOG3741|consen  289 SITTYKATSN----VDGNAYVLKRLHGDRDQSTNK---DTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPS  361 (655)
T ss_pred             cceeEeeeec----cCCceeeeeeeccccccCccc---chHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCC
Confidence            4578888866    488899999995433322221   2235788999999999999998863    3467999999865


Q ss_pred             -CChHHHHHhC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          171 -GDLHVLRQRQ-------------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       171 -~sL~~~~~~~-------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                       ++|.++.-..             .+...+|..++.++.|+..||.++|+.|+.-+-|-|.+||++.+..++|..-|+.
T Consensus       362 s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~  440 (655)
T KOG3741|consen  362 SPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIM  440 (655)
T ss_pred             CchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccce
Confidence             5666543221             1345789999999999999999999999999999999999998878888877764

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.95  E-value=7.1e-09  Score=96.27  Aligned_cols=140  Identities=21%  Similarity=0.200  Sum_probs=103.0

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-------------------hhHHHHHHHHHHHHHHcC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-------------------RNKESRARIEREILEMLD  144 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-------------------~~~~~~~~~E~~il~~l~  144 (457)
                      +.+..+||.|.=+.||.|.+.     .|..+|||.=+.....-                   .......++|.++|.+|.
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-----~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~  167 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-----KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLY  167 (304)
T ss_pred             HhhccccccCccceEEEEECC-----CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhh
Confidence            345678999999999999864     68899999643221110                   011244567888999986


Q ss_pred             CC--CCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          145 HP--FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       145 H~--nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      -.  .|.+.+++    +..++||||++|-.|..+.       +..+....++..|++-+.-+-..||||+|+.+-|||++
T Consensus       168 ~~G~~VP~P~~~----nRHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~  236 (304)
T COG0478         168 PEGVKVPKPIAW----NRHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVT  236 (304)
T ss_pred             hcCCCCCCcccc----ccceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEe
Confidence            44  67777765    3457999999998875432       23444556667777777777799999999999999999


Q ss_pred             cCCCEEEeccCCCcCCC
Q 012762          223 SDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~~  239 (457)
                      .||.+.++||-.+....
T Consensus       237 ~dg~~~vIDwPQ~v~~~  253 (304)
T COG0478         237 EDGDIVVIDWPQAVPIS  253 (304)
T ss_pred             cCCCEEEEeCcccccCC
Confidence            99999999998775544

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.95  E-value=1.8e-08  Score=92.63  Aligned_cols=128  Identities=29%  Similarity=0.254  Sum_probs=94.4

Q ss_pred             CCceEEEEEeehhh----hhhhhHHHHHHHHHHHHHHcC--CCCCceEEEEEEcCC----cEEEEEeecCC-CChHHHHH
Q 012762          110 NGCFFAAKVMDKRE----LVSRNKESRARIEREILEMLD--HPFLPTLYATLDCPR----WSCLLTEFCPG-GDLHVLRQ  178 (457)
Q Consensus       110 ~~~~vAvK~~~~~~----~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~~~~~~~----~~~lV~E~~~~-~sL~~~~~  178 (457)
                      .++.|-+|.....-    ....-...+..+|.+.+..|.  .-.++..+++.....    ..+||+|++++ .+|.+++.
T Consensus        31 ~~~~y~~k~~~~~~~~~~~~~~~~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~  110 (206)
T PF06293_consen   31 VGRRYYRKRLWNKLRRDRLRFPLRRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQ  110 (206)
T ss_pred             cceEEEECCeechhccchhhhcccchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHH
Confidence            45566666543221    111123456777888888874  344567777765532    35899999987 47988887


Q ss_pred             hCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEeccCCCcCCC
Q 012762          179 RQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDFDLSLKGD  239 (457)
Q Consensus       179 ~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~DFG~s~~~~  239 (457)
                      ...  ..+......++.++...+.-||+.||+|+|+++.|||++.++   .+.++||+-++...
T Consensus       111 ~~~--~~~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  111 QWE--QLDPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             hhc--ccchhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            642  266777888999999999999999999999999999999887   89999999876544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.86  E-value=7.8e-08  Score=87.28  Aligned_cols=141  Identities=14%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             cccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh---hhHHHHHHHHHHHHHHcC--CCCCceEEEEEEc--C--CcE
Q 012762           91 GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS---RNKESRARIEREILEMLD--HPFLPTLYATLDC--P--RWS  161 (457)
Q Consensus        91 G~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~---~~~~~~~~~E~~il~~l~--H~nIv~l~~~~~~--~--~~~  161 (457)
                      |.||.+-|+....      .|..|-+|.-...-..+   +.....+.+|...|..|.  .-.+.++..+...  +  -..
T Consensus        27 ~rgG~SgV~r~~~------~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA  100 (216)
T PRK09902         27 RRNGMSGVQCVER------NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRA  100 (216)
T ss_pred             CCCCcceEEEEEe------CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEE
Confidence            5688888887664      34457777654211111   234566888999988884  3335555522211  1  135


Q ss_pred             EEEEeecC-CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC--EEEeccCCCcC
Q 012762          162 CLLTEFCP-GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--IMLTDFDLSLK  237 (457)
Q Consensus       162 ~lV~E~~~-~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~--vkl~DFG~s~~  237 (457)
                      +||+|-+. ..+|.+++........++.....++.+|+..|.-||+.|+.|+|+-+.||+++.+|.  ++++||.-++.
T Consensus       101 ~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        101 LLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            89999773 278888877654456788888899999999999999999999999999999987777  99999987643

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.76  E-value=1.5e-07  Score=86.72  Aligned_cols=142  Identities=23%  Similarity=0.236  Sum_probs=97.4

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH---------------------HHHHHHHHHHHHHcC-
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK---------------------ESRARIEREILEMLD-  144 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~---------------------~~~~~~E~~il~~l~-  144 (457)
                      ...|.+|.-+.||+|...     .+..+|+|+++.........                     ..-.+.|..-|+++. 
T Consensus        53 ~g~istGKEA~Vy~a~~~-----~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~e  127 (268)
T COG1718          53 VGCISTGKEANVYLAETG-----DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYE  127 (268)
T ss_pred             EeeecCCcceEEEeeccC-----CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            347788888899998753     67899999996543322211                     011233555666663 


Q ss_pred             -CCCCceEEEEEEcCCcEEEEEeecCCCCh-HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEE
Q 012762          145 -HPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLV  221 (457)
Q Consensus       145 -H~nIv~l~~~~~~~~~~~lV~E~~~~~sL-~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll  221 (457)
                       +-.+.+-+++..    ..|||||+....+ .-.++   .-.+...++..+..++++.+.-|-. .++||+||..-|||+
T Consensus       128 AGVrvP~Pi~~~~----nVLvMEfIg~~g~pAP~Lk---Dv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~  200 (268)
T COG1718         128 AGVRVPEPIAFRN----NVLVMEFIGDDGLPAPRLK---DVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILV  200 (268)
T ss_pred             cCCCCCCceeecC----CeEEEEeccCCCCCCCCcc---cCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEE
Confidence             455566666543    3699999943311 11111   1234444677888899999998887 899999999999999


Q ss_pred             ccCCCEEEeccCCCcCCCCC
Q 012762          222 RSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       222 ~~~~~vkl~DFG~s~~~~~~  241 (457)
                      . ++.+.|+|||.+.....+
T Consensus       201 ~-~~~p~iID~~QaV~~~hp  219 (268)
T COG1718         201 H-DGEPYIIDVSQAVTIDHP  219 (268)
T ss_pred             E-CCeEEEEECccccccCCC
Confidence            8 889999999998766543

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.72  E-value=3.6e-07  Score=83.29  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHH------HHHHHHHHHHc---CCCCCceEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR------ARIEREILEML---DHPFLPTLY  152 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~------~~~E~~il~~l---~H~nIv~l~  152 (457)
                      .+|.+++++-.....-|-+-..      +|..+++|..+...-........      ..+++..+..+   +-..+..++
T Consensus        31 ~~~~~~kv~k~~~r~~ValIei------~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~y  104 (229)
T PF06176_consen   31 NNYKIIKVFKNTKRNYVALIEI------DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPY  104 (229)
T ss_pred             CCceEEEeecCCCccEEEEEEE------CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccce
Confidence            5788899998888888877663      67889999987643222211111      11223333333   233333333


Q ss_pred             EEEE-----cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCE
Q 012762          153 ATLD-----CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       153 ~~~~-----~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~v  227 (457)
                      .+..     .....+|||||++|..|.++..      +++    .+...|.+++.-||+.|++|+|.+|.|++++.+ .+
T Consensus       105 l~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-~i  173 (229)
T PF06176_consen  105 LAAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-GI  173 (229)
T ss_pred             eeeeeeeccceeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-cE
Confidence            3322     1234568999999999865432      232    244567788999999999999999999999855 49


Q ss_pred             EEeccCCCc
Q 012762          228 MLTDFDLSL  236 (457)
Q Consensus       228 kl~DFG~s~  236 (457)
                      +++||+..+
T Consensus       174 ~iID~~~k~  182 (229)
T PF06176_consen  174 RIIDTQGKR  182 (229)
T ss_pred             EEEECcccc
Confidence            999998753

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.70  E-value=2.8e-07  Score=90.05  Aligned_cols=238  Identities=22%  Similarity=0.243  Sum_probs=146.8

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE------EEc
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT------LDC  157 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~------~~~  157 (457)
                      ...+.||+|+-+.+|-.--      -+. -+.|++.+-......      ..++.|... .||-+-.=+.+      ..+
T Consensus        14 ~~gr~LgqGgea~ly~l~e------~~d-~VAKIYh~Pppa~~a------qk~a~la~~p~~p~~~~rvaWPqa~L~G~~   80 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGE------VRD-QVAKIYHAPPPAAQA------QKVAELAATPDAPLLNYRVAWPQATLHGGR   80 (637)
T ss_pred             CCCccccCCccceeeecch------hhc-hhheeecCCCchHHH------HHHHHhccCCCCcchhhhhcccHHHhhCCC
Confidence            3467899999999994421      122 344887653221111      123334433 45544331111      112


Q ss_pred             CC-cEEEEEeecCCCCh-HHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          158 PR-WSCLLTEFCPGGDL-HVLR----QRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       158 ~~-~~~lV~E~~~~~sL-~~~~----~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      .+ .+-+.|+.+.|..= ..+.    .++......+.....+++.|+.+..-||..|.+-+|+.++|+|++.++.|.|.|
T Consensus        81 ~~~~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVd  160 (637)
T COG4248          81 RGKVIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVD  160 (637)
T ss_pred             ccceeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEc
Confidence            22 25678888766422 1111    112233467888899999999999999999999999999999999999999998


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      -..-....+.                                                                      
T Consensus       161 sDsfqi~~ng----------------------------------------------------------------------  170 (637)
T COG4248         161 SDSFQINANG----------------------------------------------------------------------  170 (637)
T ss_pred             ccceeeccCC----------------------------------------------------------------------
Confidence            5321111100                                                                      


Q ss_pred             ccccccccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcC-CCCCCCCChH----HHHH-HHHhcc------
Q 012762          312 DVRSMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYG-TTPFKGIDHE----LTLA-NVVARA------  374 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~----~~~~-~~~~~~------  374 (457)
                       .....-+|...|.+||...     +..-+...|.|.||+++++|+.| +-||.+....    --++ .|-.+.      
T Consensus       171 -~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~  249 (637)
T COG4248         171 -TLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASD  249 (637)
T ss_pred             -ceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechh
Confidence             0001126899999999875     33346789999999999999986 9999764211    0011 111111      


Q ss_pred             ---cCCCC-----CCCCChHHHHHHHHHhhh--CCCCCCCCC
Q 012762          375 ---LEFPK-----EPSVPGPAKDLIAQLLVK--DPTRRMGSK  406 (457)
Q Consensus       375 ---~~~~~-----~~~~~~~~~~ll~~~L~~--dP~~Rps~~  406 (457)
                         ...+.     ...+++++..|..+|+..  ++.-||+.+
T Consensus       250 ~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~  291 (637)
T COG4248         250 QRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAK  291 (637)
T ss_pred             ccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHH
Confidence               11111     124568899999999875  467899954

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.67  E-value=1.6e-07  Score=96.95  Aligned_cols=145  Identities=24%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh---h----------------------------hHHHH----
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS---R----------------------------NKESR----  132 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~---~----------------------------~~~~~----  132 (457)
                      ..|+.++-|+||.|+++     +|+.|||||....-...   +                            ...+.    
T Consensus       131 ~PiAsASIaQVH~A~L~-----sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~E  205 (517)
T COG0661         131 EPIASASIAQVHRAVLK-----SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREE  205 (517)
T ss_pred             CchhhhhHhhheeEEec-----CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHH
Confidence            57899999999999997     69999999974421100   0                            00011    


Q ss_pred             --HHHHHHHHHHc----C-CCCCceEEEEE-EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Q 012762          133 --ARIEREILEML----D-HPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL  204 (457)
Q Consensus       133 --~~~E~~il~~l----~-H~nIv~l~~~~-~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yL  204 (457)
                        +.+|..-+.++    + .++ +++=.++ +......|+|||++|..+.++..... .+++...+.....++.  +.-+
T Consensus       206 lDy~~EA~n~~~~~~nf~~~~~-v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f--~~q~  281 (517)
T COG0661         206 LDYRREAANAERFRENFKDDPD-VYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAF--LRQL  281 (517)
T ss_pred             hCHHHHHHHHHHHHHHcCCCCC-eEeceeehhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHH--HHHH
Confidence              12233333333    2 232 2222222 33455679999999999987743322 4455444333322221  2223


Q ss_pred             HHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       205 H~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      -..|++|.|.+|.||+++.+|.+.+.|||+.....+.
T Consensus       282 ~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         282 LRDGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             HhcCccccCCCccceEEecCCcEEEEcCcceecCCHH
Confidence            3489999999999999999999999999998766543

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.65  E-value=3.2e-09  Score=108.21  Aligned_cols=243  Identities=16%  Similarity=0.181  Sum_probs=160.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~~  161 (457)
                      .+...+-+++|+++++++.+..+    .. ....+.+..        ......++++|.+++||| .+..++-++.+.+.
T Consensus       243 ws~~fh~fvK~altknpKkRpta----ek-lL~h~fvs~--------~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~  309 (829)
T KOG0576|consen  243 WSEFFHNFVKGALTKNPKKRPTA----EK-LLQHPFVSQ--------TLSRRLAIELLDKVNNPNPVVRYLEDYDGEDYL  309 (829)
T ss_pred             chHHHHHHHHHHhcCCCccCCCh----hh-heeceeecc--------chhhHHHHHHHHHccCCCCcccccccCCccccc
Confidence            46666778999999999766432    22 223555532        244556899999999999 77778888888899


Q ss_pred             EEEEeecCCC-ChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~-sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +++|+++.++ +-...+.. ..-.+.+-+...+++.-..+|+++|+.--+|+|    ||+..+ +..+..||+....+..
T Consensus       310 ~i~~~i~s~~rs~~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~  383 (829)
T KOG0576|consen  310 WIPMRICSTGRSSALEMTV-SEIALEQYQFAYPLRKETRPLAELHSSYKVHRD----NILGSE-EEVKLLDFAVPPQLTR  383 (829)
T ss_pred             chhhhhhcCCccccccCCh-hhHhhhhhhhhhhhhhhcccccccccccccCcc----cccccc-cccccccccCCcccCc
Confidence            9999999776 22111110 011233444555667778899999988778998    777754 6789999987644332


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .-                                                                       ...++.+
T Consensus       384 ~~-----------------------------------------------------------------------~~~t~~~  392 (829)
T KOG0576|consen  384 TM-----------------------------------------------------------------------KPRTAIG  392 (829)
T ss_pred             cc-----------------------------------------------------------------------ccccCCC
Confidence            10                                                                       1124579


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHH-HHHHHHhhh
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAK-DLIAQLLVK  397 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~ll~~~L~~  397 (457)
                      |+.++|||+..+..+....|+|++|+-..+|.-|.+|-........  .+-.+.  ..+.....++.... ++...|+.-
T Consensus       393 ~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~P~~~~~--~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~g  470 (829)
T KOG0576|consen  393 TPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSSPPAVLP--MIGNGPNSPMLTDKSAWSPVFHRDFPAPCLNG  470 (829)
T ss_pred             CCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCCCccccC--CCCCCCCccccchhhhcCcccccCCcccccCC
Confidence            9999999999999999999999999988888878777543111000  000000  00000001111122 477788888


Q ss_pred             CCCCCCCCCcChHHHhcCCCCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .|..|+.    ...++.|.+|++-
T Consensus       471 ~P~~pkv----~mgacfsKvfngC  490 (829)
T KOG0576|consen  471 LPPTPKV----HMGACFSKVFNGC  490 (829)
T ss_pred             CCCCCcc----hhhHHHHHHhccC
Confidence            8999988    8889999998873

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.61  E-value=7.8e-07  Score=82.97  Aligned_cols=138  Identities=12%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC--CceEEEEEEcCCcEEEEE
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF--LPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n--Iv~l~~~~~~~~~~~lV~  165 (457)
                      ..||.|..+.||+.        .+..+++|+.....     ......+|.++++.+..-+  +.+++++....+...+||
T Consensus         7 ~~i~~G~t~~~y~~--------~~~~~VlR~~~~~~-----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~   73 (226)
T TIGR02172         7 TQTGEGGNGESYTH--------KTGKWMLKLYNPGF-----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIY   73 (226)
T ss_pred             eeecCCCCcceeEe--------cCCCEEEEeCCCCC-----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeee
Confidence            57899999999963        23357889875421     2334577999999986433  578888888888888999


Q ss_pred             eecCCCC-hH--------------HHH-------HhCCCCCCCHHHH-HHHHHH----------HHH-HHHHHH----Hc
Q 012762          166 EFCPGGD-LH--------------VLR-------QRQPDKRFHESAV-RFYASE----------VVV-ALEFLH----MM  207 (457)
Q Consensus       166 E~~~~~s-L~--------------~~~-------~~~~~~~~~~~~~-~~i~~q----------i~~-~L~yLH----~~  207 (457)
                      |+++|.. +.              ..+       +..+......... ..+..+          +.. ...+|.    ..
T Consensus        74 e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~  153 (226)
T TIGR02172        74 ELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTS  153 (226)
T ss_pred             eecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCC
Confidence            9998864 11              101       1110011111110 111000          111 122222    12


Q ss_pred             CceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       208 ~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .++|+|+.|.||+++.++ +.++||+.+....
T Consensus       154 ~~~HgD~~~~Nii~~~~~-~~iIDwe~a~~Gd  184 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGKG-TYWIDLGDFGYGN  184 (226)
T ss_pred             ceEecCCCCCcEEEcCCC-cEEEechhcCcCC
Confidence            478999999999999888 9999999875443

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.57  E-value=3.3e-07  Score=79.98  Aligned_cols=131  Identities=24%  Similarity=0.273  Sum_probs=96.4

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEE
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSC  162 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~  162 (457)
                      .++.+.||+|.+|.||+|.++      |..+|+|+-..     +.....+..|+++|..+...++ .++|.|..+    +
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~------~~~~a~Kvrr~-----ds~r~~l~kEakiLeil~g~~~~p~vy~yg~~----~   88 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWR------GGEVALKVRRR-----DSPRRNLEKEAKILEILAGEGVTPEVYFYGED----F   88 (201)
T ss_pred             hhhhhhhhcccccEEEEeecc------CceEEEEEecC-----CcchhhHHHHHHHHHHhhhcCCCceEEEechh----h
Confidence            456788999999999999985      55899998743     3566778889999999987776 456666543    3


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCC-CCCeEEccCCCEEEeccCCCcCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLK-PENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIK-p~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +.|||++|-.|..+-..     .+...    +..+++.-.-|-..||-|..|. |..++|-.++.+.|+||.-|..-
T Consensus        89 i~me~i~G~~L~~~~~~-----~~rk~----l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~k  156 (201)
T COG2112          89 IRMEYIDGRPLGKLEIG-----GDRKH----LLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSATFK  156 (201)
T ss_pred             hhhhhhcCcchhhhhhc-----ccHHH----HHHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchhhc
Confidence            56999999888654322     12223    3445555555667899999997 77777777779999999987643

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.2e-06  Score=95.41  Aligned_cols=202  Identities=19%  Similarity=0.232  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHcCCCCCceEEEEEEcCCcE----EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 012762          133 ARIEREILEMLDHPFLPTLYATLDCPRWS----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG  208 (457)
Q Consensus       133 ~~~E~~il~~l~H~nIv~l~~~~~~~~~~----~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~  208 (457)
                      ...|.+.+.+..|+|++.++.|.......    .+..|+|...++...++.-  ...+....+.+..++++||.|+|+..
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL~~~h~~~  306 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV--GSIPLETLRILHQKLLEGLAYLHSLS  306 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhHHHHHHhc
Confidence            34466678888999999999998654332    3456788888988887765  67889999999999999999999986


Q ss_pred             ceeecCCCC---CeEEccCCCEEEe--ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 012762          209 IIYRDLKPE---NVLVRSDGHIMLT--DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVP  283 (457)
Q Consensus       209 iiHrDIKp~---NIll~~~~~vkl~--DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (457)
                      ..|.-+-..   +--.+.++.+.++  ||+.++...+.....                                      
T Consensus       307 l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~--------------------------------------  348 (1351)
T KOG1035|consen  307 LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSF--------------------------------------  348 (1351)
T ss_pred             cceeEEecccccccccCccceeecchhhhcccccCCCcccch--------------------------------------
Confidence            555544443   3333445555655  777654443221110                                      


Q ss_pred             cccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCc--cchhhhhhHHHHHHhcCCCCCCCC
Q 012762          284 AVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGN--AVDWWTLGIFIFELFYGTTPFKGI  361 (457)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~--~sDiwSlG~il~elltG~~Pf~~~  361 (457)
                                                       ...-+..+.++|......+..  ..|+|.+|..+..+..|..+-...
T Consensus       349 ---------------------------------~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~  395 (1351)
T KOG1035|consen  349 ---------------------------------SDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKS  395 (1351)
T ss_pred             ---------------------------------hhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCcccccc
Confidence                                             112455677888777665544  479999999999999877543211


Q ss_pred             ChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          362 DHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .   .....+..        .......+++.+|+..+.++|++    +.+++.|+|.+.-.
T Consensus       396 ~---~~~~~l~~--------~~~~~~~d~~~~~~~~~~~~Rl~----~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  396 A---VPVSLLDV--------LSTSELLDALPKCLDEDSEERLS----ALELLTHPFLRFPT  441 (1351)
T ss_pred             c---chhhhhcc--------ccchhhhhhhhhhcchhhhhccc----hhhhhhchhccccc
Confidence            1   11111100        11225788999999999999999    99999999987643

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.46  E-value=3.8e-06  Score=78.07  Aligned_cols=139  Identities=27%  Similarity=0.339  Sum_probs=82.0

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC--CCceEEEEEE---cCCcE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP--FLPTLYATLD---CPRWS  161 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~--nIv~l~~~~~---~~~~~  161 (457)
                      ++.|+.|..+.||++...     + ..+++|+....     .....+..|.++++.|...  .+.+++.+..   .....
T Consensus         2 i~~l~~G~~n~~~~v~~~-----~-~~~vlK~~~~~-----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~   70 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTD-----D-GRYVLKFYRPP-----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFP   70 (239)
T ss_dssp             EEEEEESSSSEEEEEEET-----T-SEEEEEEESSH-----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEE
T ss_pred             CccCCCCCeeeEEEEEEC-----C-cEEEEEEeCCC-----CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccc
Confidence            578999999999998853     3 58999997543     2445566788898888533  3567776442   23357


Q ss_pred             EEEEeecCCCChHH----------------HHH---hC--CCCCCCHHH------HHHH---------------HHHHHH
Q 012762          162 CLLTEFCPGGDLHV----------------LRQ---RQ--PDKRFHESA------VRFY---------------ASEVVV  199 (457)
Q Consensus       162 ~lV~E~~~~~sL~~----------------~~~---~~--~~~~~~~~~------~~~i---------------~~qi~~  199 (457)
                      +++|++++|..+..                ++.   ..  ....+....      ....               ...+..
T Consensus        71 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (239)
T PF01636_consen   71 YLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEE  150 (239)
T ss_dssp             EEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             eEEEEEeccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence            89999999988866                111   11  111111100      0000               111222


Q ss_pred             -HHHHHHH-------cCceeecCCCCCeEEc-cCCCEEEeccCCCc
Q 012762          200 -ALEFLHM-------MGIIYRDLKPENVLVR-SDGHIMLTDFDLSL  236 (457)
Q Consensus       200 -~L~yLH~-------~~iiHrDIKp~NIll~-~~~~vkl~DFG~s~  236 (457)
                       .+..+++       ..++|+|+.|.|||++ .++.+.|+||+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  151 RLLQELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             HHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             HHHHHHHhhhccCCCcEEEEeccccccceeeeccceeEEEecccce
Confidence             3333332       3599999999999999 56666899998864

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.45  E-value=2.6e-06  Score=80.39  Aligned_cols=139  Identities=20%  Similarity=0.133  Sum_probs=85.4

Q ss_pred             EecccCc-ceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcEEEEEe
Q 012762           89 RLGSGDI-GSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        89 ~LG~G~f-g~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      .|-.|.+ +.||+...      .+..+.+|+.....      ......|+++++.+. +--+.+++++...++..++|||
T Consensus         5 ~~~~g~~~~~v~~~~~------~~~~~~vk~~~~~~------~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e   72 (244)
T cd05150           5 RVTEGQSGATVYRLDG------KNPGLYLKIAPSGP------TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTS   72 (244)
T ss_pred             ecCCCCCcCeEEEEcC------CCCcEEEEecCCCc------ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEE
Confidence            4455655 78998753      23568888875432      234566999988883 4557788888877777899999


Q ss_pred             ecCCCChHHHHH-------------------hCC--CCCCCHH--HHHHH-----------------------HHHHHHH
Q 012762          167 FCPGGDLHVLRQ-------------------RQP--DKRFHES--AVRFY-----------------------ASEVVVA  200 (457)
Q Consensus       167 ~~~~~sL~~~~~-------------------~~~--~~~~~~~--~~~~i-----------------------~~qi~~~  200 (457)
                      +++|.+|.....                   ..+  ...+...  .....                       ..+++..
T Consensus        73 ~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (244)
T cd05150          73 AVPGVPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAE  152 (244)
T ss_pred             eeCCccHhHhhcccCHHHHHHHHHHHHHHHhcCCcccCCcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHH
Confidence            999988753310                   011  0111100  00000                       1111111


Q ss_pred             HHHH----HHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          201 LEFL----HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       201 L~yL----H~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      |...    ....++|+|+.|.|||++.++.+.|+||+.+....
T Consensus       153 l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~~gd  195 (244)
T cd05150         153 LEATRPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVAD  195 (244)
T ss_pred             HHhhCCCcCceEEECCCCCCccEEEeCCcEEEEEEcccccccc
Confidence            1111    12349999999999999988778899999875443

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.41  E-value=4.2e-06  Score=75.49  Aligned_cols=128  Identities=24%  Similarity=0.350  Sum_probs=90.8

Q ss_pred             CCceeEEEecccCc-ceEEEEEEeccCCCCCceEEEEEeehhhhhhh------------------hHHHHHHHHHHHHHH
Q 012762           82 SDLRFVHRLGSGDI-GSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR------------------NKESRARIEREILEM  142 (457)
Q Consensus        82 ~~~~~~~~LG~G~f-g~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~------------------~~~~~~~~E~~il~~  142 (457)
                      .+++.++.||.|.- |.||+++.      .|..||+|++..-.....                  ....-|..|-+...+
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I------~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgR  110 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI------DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGR  110 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE------CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHH
Confidence            78999999999999 99999986      677999999422111100                  112345667776665


Q ss_pred             c---CCCCC--ceEEEEEEcC------------------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 012762          143 L---DHPFL--PTLYATLDCP------------------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV  199 (457)
Q Consensus       143 l---~H~nI--v~l~~~~~~~------------------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~  199 (457)
                      |   ++.++  |+++||..-.                  ....||.||+....           .+.    ..-+.+|+.
T Consensus       111 Lke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~----~~~~~~~~~  175 (207)
T PF13095_consen  111 LKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQ----IRDIPQMLR  175 (207)
T ss_pred             HHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccc----hhHHHHHHH
Confidence            5   46667  9999987322                  12367888875433           122    223467888


Q ss_pred             HHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       200 ~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      -|..+|..||+-+|+|+.|..   +  -+|+|||.+
T Consensus       176 dl~~~~k~gI~~~Dv~~~ny~---~--G~lvDfs~~  206 (207)
T PF13095_consen  176 DLKILHKLGIVPRDVKPRNYR---G--GKLVDFSSS  206 (207)
T ss_pred             HHHHHHHCCeeeccCcccccc---C--CEEEecccC
Confidence            899999999999999999986   3  489999864

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.39  E-value=2.6e-06  Score=87.87  Aligned_cols=145  Identities=21%  Similarity=0.210  Sum_probs=91.1

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh----------------------------hhHHHH------
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS----------------------------RNKESR------  132 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~----------------------------~~~~~~------  132 (457)
                      .+.||.-+.|+||+|+.+     +|+.|||||-+..--..                            +...+.      
T Consensus       166 ~~piaaASlaQVhrA~L~-----~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELD  240 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLK-----NGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELD  240 (538)
T ss_pred             cchhhhcchhheEEEEec-----CCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcc
Confidence            367999999999999987     69999999964321000                            000011      


Q ss_pred             HHHHHH----HHHHcCCCC------CceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Q 012762          133 ARIERE----ILEMLDHPF------LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE  202 (457)
Q Consensus       133 ~~~E~~----il~~l~H~n------Iv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~  202 (457)
                      |.+|.+    +.+.+.|-+      |.++|..+  .....|+||||+|..+.++..... .+++...+..-+.++..  +
T Consensus       241 F~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~Dl~~i~~-~gi~~~~i~~~l~~~~~--~  315 (538)
T KOG1235|consen  241 FTKEAKNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKINDLDAIDK-RGISPHDILNKLVEAYL--E  315 (538)
T ss_pred             hHHHHHhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCCHHHHHH-cCCCHHHHHHHHHHHHH--H
Confidence            122322    233345655      44444433  345789999999988865543322 44665544433333222  1


Q ss_pred             HHHHcCceeecCCCCCeEEcc----CCCEEEeccCCCcCCCCC
Q 012762          203 FLHMMGIIYRDLKPENVLVRS----DGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       203 yLH~~~iiHrDIKp~NIll~~----~~~vkl~DFG~s~~~~~~  241 (457)
                      -|-..|++|.|=+|.||+++.    ++.+.+.|||+.......
T Consensus       316 qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~  358 (538)
T KOG1235|consen  316 QIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHK  358 (538)
T ss_pred             HHHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHH
Confidence            222568999999999999984    568999999998766543

>PLN02876 acyl-CoA dehydrogenase

Probab=98.29  E-value=1.2e-05  Score=89.11  Aligned_cols=152  Identities=16%  Similarity=0.296  Sum_probs=92.5

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCC--ceEEEEEEcC---C
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFL--PTLYATLDCP---R  159 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nI--v~l~~~~~~~---~  159 (457)
                      -++.|+.|.+..+|+......  .....+++|+.......  .....+.+|.++|+.+. |.+|  .+++.++.+.   +
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~--~~~~~~VLR~~p~~~~~--~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G  117 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNG--GSVKRYVLRKKPPGKLL--QSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIG  117 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCC--CcceeEEEEeCCCCccC--ccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCC
Confidence            367889999999999875421  11135777776443211  12345678999999995 6664  7888887654   4


Q ss_pred             cEEEEEeecCCCChHH--------------------HHH---hCCCC--C---------CCHHHHHHHHHH---------
Q 012762          160 WSCLLTEFCPGGDLHV--------------------LRQ---RQPDK--R---------FHESAVRFYASE---------  196 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~--------------------~~~---~~~~~--~---------~~~~~~~~i~~q---------  196 (457)
                      ..|+||||++|..+.+                    .+.   .....  .         +...++..|..+         
T Consensus       118 ~~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~La~LH~vd~~~~gl~~~g~~~~~~~~~l~~w~~~~~~~~~~~~  197 (822)
T PLN02876        118 TAFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVLAALHSADVDAIGLGKYGRRDNYCKRQVERWAKQYLASTGEGK  197 (822)
T ss_pred             CceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHHHHHhCCCchhcChhhcCCCCchHHHHHHHHHHHHHHhhcccC
Confidence            6789999998765321                    111   10000  0         111223222121         


Q ss_pred             ------HHHHHHHHHH-----------cCceeecCCCCCeEEccC-CC-EEEeccCCCcCCCCC
Q 012762          197 ------VVVALEFLHM-----------MGIIYRDLKPENVLVRSD-GH-IMLTDFDLSLKGDNS  241 (457)
Q Consensus       197 ------i~~~L~yLH~-----------~~iiHrDIKp~NIll~~~-~~-vkl~DFG~s~~~~~~  241 (457)
                            +...+++|..           ..+||+|+++.|||++.+ +. +-|.||+++....+.
T Consensus       198 ~~~~~~~~~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~GdPl  261 (822)
T PLN02876        198 PPRNPKMLELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLGNQM  261 (822)
T ss_pred             CCCChhHHHHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccCChH
Confidence                  2233556642           249999999999999853 33 579999987665543

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.23  E-value=1e-05  Score=75.91  Aligned_cols=72  Identities=14%  Similarity=0.202  Sum_probs=46.7

Q ss_pred             EEecccCcc-eEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC---CCceEEEEEEcC---Cc
Q 012762           88 HRLGSGDIG-SVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP---FLPTLYATLDCP---RW  160 (457)
Q Consensus        88 ~~LG~G~fg-~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~---nIv~l~~~~~~~---~~  160 (457)
                      +.|+.|+.. .||+.         +..+++|+....     .....+.+|.++|+.|...   .+..+++.....   ..
T Consensus         3 ~~~~~gG~~n~vy~~---------~~~~VlR~~~~~-----~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~   68 (235)
T cd05155           3 EPVDSGGTDNATFRL---------GDDMSVRLPSAA-----GYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPW   68 (235)
T ss_pred             eeccCCCcccceEEc---------CCceEEEcCCcc-----chHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCc
Confidence            567777776 49854         224778876542     1234677899999888532   355556554432   24


Q ss_pred             EEEEEeecCCCCh
Q 012762          161 SCLLTEFCPGGDL  173 (457)
Q Consensus       161 ~~lV~E~~~~~sL  173 (457)
                      .|+||++++|.++
T Consensus        69 ~~~l~~~i~G~~l   81 (235)
T cd05155          69 PWSVYRWLEGETA   81 (235)
T ss_pred             ceEEEEeecCCCC
Confidence            5899999999776

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.19  E-value=4.5e-05  Score=69.32  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=93.9

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhh-------------hhhhhHHHHHHHHHHHHHHcC------CCCC
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE-------------LVSRNKESRARIEREILEMLD------HPFL  148 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~-------------~~~~~~~~~~~~E~~il~~l~------H~nI  148 (457)
                      ..||+|+.-.||.-       ......+||++....             ........+.++|+.-...+.      +.+|
T Consensus         7 ~~i~~G~~R~cy~H-------P~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i   79 (199)
T PF10707_consen    7 DLIAQGGERDCYQH-------PDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHI   79 (199)
T ss_pred             cccccCCCceEEEC-------CCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccccc
Confidence            46899999999941       345568899997765             001122455566766655554      7889


Q ss_pred             ceEEEEEEcCCcEEEEEeecCC------CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          149 PTLYATLDCPRWSCLLTEFCPG------GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       149 v~l~~~~~~~~~~~lV~E~~~~------~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      .+++|+.+++.-.-+|+|.+.+      .+|.+++..   ..+++ .   +...+-+-.+||-+.+|+.+||+|.||++.
T Consensus        80 ~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~-~---~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~  152 (199)
T PF10707_consen   80 PRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE---GGLTE-E---LRQALDEFKRYLLDHHIVIRDLNPHNIVVQ  152 (199)
T ss_pred             ccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc---CCccH-H---HHHHHHHHHHHHHHcCCeecCCCcccEEEE
Confidence            9999999999888999998633      356777755   45665 2   233344556788899999999999999997


Q ss_pred             cC--C--CEEEec-cCC
Q 012762          223 SD--G--HIMLTD-FDL  234 (457)
Q Consensus       223 ~~--~--~vkl~D-FG~  234 (457)
                      ..  +  .+.|+| ||-
T Consensus       153 ~~~~~~~~lvlIDG~G~  169 (199)
T PF10707_consen  153 RRDSGEFRLVLIDGLGE  169 (199)
T ss_pred             ecCCCceEEEEEeCCCC
Confidence            43  2  578888 553

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK10593 hypothetical protein; Provisional

Probab=97.97  E-value=0.00014  Score=70.85  Aligned_cols=79  Identities=19%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC---CCCceEEEEEEcC--
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH---PFLPTLYATLDCP--  158 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H---~nIv~l~~~~~~~--  158 (457)
                      ..-.+.||.|..+.||.....     .+ .+.+|..+..     .....+..|.+.|+.|..   -.|.++++++..+  
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~-----~~-~~~~k~~~~~-----~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~   84 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDS-----QG-NPMPLMARSF-----STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQS   84 (297)
T ss_pred             hheeeecCCccceeEEEEEcC-----CC-CEEEEEeccc-----ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCc
Confidence            344678999999999987642     23 4677775321     123467789999999853   4688899887543  


Q ss_pred             -CcEEEEEeecCCCCh
Q 012762          159 -RWSCLLTEFCPGGDL  173 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL  173 (457)
                       +..+||||+++|.++
T Consensus        85 ~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         85 PGPDVLLLERLRGVSV  100 (297)
T ss_pred             CCCeEEEEeccCCEec
Confidence             668999999988764

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.91  E-value=0.0002  Score=70.04  Aligned_cols=143  Identities=21%  Similarity=0.243  Sum_probs=83.5

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC--CCceEEEEE-----
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP--FLPTLYATL-----  155 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~--nIv~l~~~~-----  155 (457)
                      ...-++.++.|....+|++...     +| .+++|+.....     ....+..|.+++..|...  .+.+++...     
T Consensus        23 ~~~~i~~~~~G~~n~~y~v~t~-----~~-~~vLK~~~~~~-----~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~   91 (307)
T TIGR00938        23 ELLSLKGIAEGVENSNYLLTTD-----VG-RYILTLYEKRV-----KAEELPFFLALTTHLAARGLPVPKPVKSRDGRQL   91 (307)
T ss_pred             CceeccccCCccccceEEEEeC-----CC-cEEEEEecCCC-----CHHHHHHHHHHHHHHHHCCCCCCccccCCCCCee
Confidence            4455777888888899987531     33 57889875421     123345577888877422  244554421     


Q ss_pred             -EcCCcEEEEEeecCCCChH-----------HHH---HhC-CCCC------CCHHH-----HH----------HHHHHHH
Q 012762          156 -DCPRWSCLLTEFCPGGDLH-----------VLR---QRQ-PDKR------FHESA-----VR----------FYASEVV  198 (457)
Q Consensus       156 -~~~~~~~lV~E~~~~~sL~-----------~~~---~~~-~~~~------~~~~~-----~~----------~i~~qi~  198 (457)
                       ...+..++||||++|..+.           ..+   +.. ....      .....     ..          .....+.
T Consensus        92 ~~~~g~~~~l~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~  171 (307)
T TIGR00938        92 STLAGKPACLVEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELD  171 (307)
T ss_pred             hhcCCeEEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHH
Confidence             2245678999999886541           111   110 0000      00000     00          0011233


Q ss_pred             HHHHHHHH-------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          199 VALEFLHM-------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       199 ~~L~yLH~-------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..++++..       .++||+|+++.||+++.++.+.|+||+.+.
T Consensus       172 ~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       172 KELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             HHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            34555542       589999999999999988877899999864

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.88  E-value=3.9e-06  Score=93.38  Aligned_cols=229  Identities=13%  Similarity=0.046  Sum_probs=150.6

Q ss_pred             eEEEEEeehhhhhh--hhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--CCcEEEEEeecCCCChHHHHHhC--CCCCCC
Q 012762          113 FFAAKVMDKRELVS--RNKESRARIEREILEMLDHPFLPTLYATLDC--PRWSCLLTEFCPGGDLHVLRQRQ--PDKRFH  186 (457)
Q Consensus       113 ~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~  186 (457)
                      .+.+|+.+..+...  +...+....|+.-++...|+++...+.=...  ....+.+++|+.+|.+...+-..  ....+.
T Consensus      1254 ~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld 1333 (2724)
T KOG1826|consen 1254 WFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLD 1333 (2724)
T ss_pred             eeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcch
Confidence            35666665443321  2223334445666667789998877665533  33568999999999998777542  122344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-----CceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCC
Q 012762          187 ESAVRFYASEVVVALEFLHMM-----GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN  261 (457)
Q Consensus       187 ~~~~~~i~~qi~~~L~yLH~~-----~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (457)
                      +..+.....+.+.+..-+|++     -.+|+++|+-|.+|..+-.+|++++|+.+...+...                  
T Consensus      1334 ~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~s------------------ 1395 (2724)
T KOG1826|consen 1334 RSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLS------------------ 1395 (2724)
T ss_pred             hchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHh------------------
Confidence            444444444447777777754     289999999999999999999999999873322111                  


Q ss_pred             CCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchh
Q 012762          262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDW  341 (457)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDi  341 (457)
                                                                          .....++++.|+.|++.....++.++|+
T Consensus      1396 ----------------------------------------------------f~Gl~l~sp~~v~qli~N~ik~t~rsdi 1423 (2724)
T KOG1826|consen 1396 ----------------------------------------------------FFGLELCSPIYVLQLIKNEIKFTKRSDI 1423 (2724)
T ss_pred             ----------------------------------------------------hhhhhhCCHHHHHHHHHHHHhhhhHHHH
Confidence                                                                1113468889999999998889999999


Q ss_pred             hhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCC
Q 012762          342 WTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF  417 (457)
Q Consensus       342 wSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~  417 (457)
                      |..|+.+|++..|..+|-.     ....++++..+-..    +...|++.-.....+|-+.-..||.    -...+.-+.
T Consensus      1424 lr~s~~ly~rs~~n~~fi~-----flq~~Lkgiidn~tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~----q~isls~d~ 1494 (2724)
T KOG1826|consen 1424 LRRSLSLYLRSDGNAYFIF-----FLQPALKGIIDNHTFFSIEKLKPGDANVEALHRLLWKYMERPG----QYISLSRDH 1494 (2724)
T ss_pred             HHHHHHHHHHhcccHHHHH-----HHHHHHcCcccccccccccccCCCcccHHHHHHHHHHhhhcch----hhhhccccc
Confidence            9999999999999888743     23333333332222    2223455555556666666678888    666776666


Q ss_pred             CCC
Q 012762          418 FNG  420 (457)
Q Consensus       418 f~~  420 (457)
                      |..
T Consensus      1495 ~a~ 1497 (2724)
T KOG1826|consen 1495 FAV 1497 (2724)
T ss_pred             ccc
Confidence            643

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.87  E-value=2e-05  Score=75.36  Aligned_cols=135  Identities=20%  Similarity=0.255  Sum_probs=96.4

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH-------------------HHHHHHHHHHHHHcC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK-------------------ESRARIEREILEMLD  144 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~-------------------~~~~~~E~~il~~l~  144 (457)
                      +.+..+||-|.=+.||.+.+.     .|..+++|+=+......++.                   .....+|...|+.|.
T Consensus        94 ~svGnqIGVGKESDIY~v~d~-----~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~  168 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADE-----EGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALY  168 (465)
T ss_pred             hhhccccccccccceEEEecC-----CCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHH
Confidence            456788999999999999874     68888988643332221111                   122345777888874


Q ss_pred             -C-CCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          145 -H-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       145 -H-~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                       | --|.+.+++    +..|+|||++.|..|....+..        .+..+...+..-+.-|...|+||+|..-=||++.
T Consensus       169 e~gfpVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v~--------d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~  236 (465)
T KOG2268|consen  169 ERGFPVPKPIDH----NRHCVVMELVDGYPLRQVRHVE--------DPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVK  236 (465)
T ss_pred             HcCCCCCCcccc----cceeeHHHhhcccceeeeeecC--------ChHHHHHHHHHHHHHHHHcCceecccchheeEEe
Confidence             3 335555554    3568999999999986544321        2334555666677788899999999999999999


Q ss_pred             cCCCEEEeccCCC
Q 012762          223 SDGHIMLTDFDLS  235 (457)
Q Consensus       223 ~~~~vkl~DFG~s  235 (457)
                      .++.++++||-..
T Consensus       237 dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  237 DDDKIVVIDFPQM  249 (465)
T ss_pred             cCCCEEEeechHh
Confidence            9999999999754

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.00012  Score=71.32  Aligned_cols=144  Identities=22%  Similarity=0.261  Sum_probs=95.5

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhh-------------------H----HHHHHHHHHHHHH
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN-------------------K----ESRARIEREILEM  142 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~-------------------~----~~~~~~E~~il~~  142 (457)
                      +-..|..|-=+.||.|.-.     +|..+|||+++..-+...+                   .    .--...|.+-|++
T Consensus       148 inGCiSTGKEANVYHat~~-----dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkR  222 (520)
T KOG2270|consen  148 INGCISTGKEANVYHATEE-----DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKR  222 (520)
T ss_pred             cccccccCccceeEeeecC-----CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHH
Confidence            3456788999999998754     7888999998543221111                   0    1112336666777


Q ss_pred             cCCCCCceEEEEEEcCCcEEEEEeecCCCCh-HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceeecCCCCCeE
Q 012762          143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVL  220 (457)
Q Consensus       143 l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL-~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~iiHrDIKp~NIl  220 (457)
                      |+...|..---.. - ....|||+|+.+... .-.++   +..++...+..+-.|++.-+.-|- .+++||.||.-=|+|
T Consensus       223 l~~aGIP~PePIl-L-k~hVLVM~FlGrdgw~aPkLK---d~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~L  297 (520)
T KOG2270|consen  223 LNNAGIPCPEPIL-L-KNHVLVMEFLGRDGWAAPKLK---DASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLL  297 (520)
T ss_pred             HHhcCCCCCCcee-e-ecceEeeeeccCCCCcCcccc---cccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhhe
Confidence            7655543211111 1 124699999943222 11222   356777788888888888888776 679999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~  240 (457)
                      + .+|.+.|+|.+.+.....
T Consensus       298 y-hdG~lyiIDVSQSVE~DH  316 (520)
T KOG2270|consen  298 Y-HDGKLYIIDVSQSVEHDH  316 (520)
T ss_pred             E-ECCEEEEEEccccccCCC
Confidence            8 578899999998876653

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.81  E-value=8.5e-05  Score=67.12  Aligned_cols=98  Identities=21%  Similarity=0.201  Sum_probs=77.1

Q ss_pred             HHHHHHHHcCC-CCCceEEEEEEcCCcEEEEEeecCCCChHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHHHHH---cCc
Q 012762          135 IEREILEMLDH-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQ-RQPDKRFHESAVRFYASEVVVALEFLHM---MGI  209 (457)
Q Consensus       135 ~E~~il~~l~H-~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~-~~~~~~~~~~~~~~i~~qi~~~L~yLH~---~~i  209 (457)
                      .|.-+|+.+.+ +++++++|+|-.    ++|.||...+++..... .......++.....++.++++.+.+|+.   ..+
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~   83 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFF   83 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeECCC----EEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence            37778888865 699999999843    57999997776642100 0011346899999999999999999997   358


Q ss_pred             eeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          210 IYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       210 iHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .-.|++++|+-++.+|.+|++|...+.
T Consensus        84 ~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   84 YLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             EEeecchHHeEEeCCCcEEEEechhcc
Confidence            888999999999999999999998654

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.81  E-value=0.00071  Score=68.10  Aligned_cols=79  Identities=20%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             EEEecccCcceEEEEEEeccCCCCC-ceEEEEEeehhhh----hhhhHHHHHHHHHHHHHHcC---CCCCceEEEEEEcC
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNG-CFFAAKVMDKREL----VSRNKESRARIEREILEMLD---HPFLPTLYATLDCP  158 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~-~~vAvK~~~~~~~----~~~~~~~~~~~E~~il~~l~---H~nIv~l~~~~~~~  158 (457)
                      .+.||.|.+..||++...     .| +.|+||.-....-    .......+...|.+.|+.+.   -.++++++.+.  .
T Consensus        31 ~~elggGn~N~VyrV~~~-----~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--~  103 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDT-----EGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--E  103 (401)
T ss_pred             eeEcCCCceEEEEEEEeC-----CCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--C
Confidence            578999999999999864     34 5799998542210    01234567788999988863   34678888873  3


Q ss_pred             CcEEEEEeecCCCC
Q 012762          159 RWSCLLTEFCPGGD  172 (457)
Q Consensus       159 ~~~~lV~E~~~~~s  172 (457)
                      +..++|||++++..
T Consensus       104 ~~~~lVME~L~~~~  117 (401)
T PRK09550        104 ELAVTVMEDLSDHK  117 (401)
T ss_pred             CCCEEEEecCCCcc
Confidence            55789999997644

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.80  E-value=0.00016  Score=70.15  Aligned_cols=140  Identities=19%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC--CCceEEEE------EE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP--FLPTLYAT------LD  156 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~--nIv~l~~~------~~  156 (457)
                      .-++.|..|....+|+...      .+..+++|+...      ........|++++..|.+.  .+.+++..      ..
T Consensus        17 ~~i~~i~~G~~n~~y~v~~------~~~~~vLr~~~~------~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~   84 (296)
T cd05153          17 LSFEGISAGIENTNYFVTT------DSGRYVLTLFEK------VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSE   84 (296)
T ss_pred             hheecccCccccceEEEEe------CCCcEEEEEcCC------CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeee
Confidence            3366788888899998763      234688998753      1234456688888888433  24555442      23


Q ss_pred             cCCcEEEEEeecCCCChHH----HHH----------hC----CCC----CC-CHHHH--H--------HHHHHHHHHHHH
Q 012762          157 CPRWSCLLTEFCPGGDLHV----LRQ----------RQ----PDK----RF-HESAV--R--------FYASEVVVALEF  203 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~----~~~----------~~----~~~----~~-~~~~~--~--------~i~~qi~~~L~y  203 (457)
                      .++..++||++++|..+..    ...          ..    ...    .. .+...  .        .....+...+.+
T Consensus        85 ~~~~~~~l~~~i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  164 (296)
T cd05153          85 LAGKPAALVEFLAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELAR  164 (296)
T ss_pred             eCCceEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence            3456789999999877521    000          00    000    00 00000  0        011112333444


Q ss_pred             HHH-------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          204 LHM-------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       204 LH~-------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +..       .+++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       165 l~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         165 QDAFDPSDLPRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             HHhhhhhcCCCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            443       479999999999999987777899998864

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.79  E-value=0.00021  Score=66.92  Aligned_cols=76  Identities=26%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCcEEEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~~~lV~  165 (457)
                      ++.|..|-...+|++....   ..+..|++|+......    ......+|..+++.+...+ ++++++.+..    .+||
T Consensus         3 i~~l~gG~tN~~~~v~~~~---~~~~~~vlR~~~~~~~----~~~d~~~E~~~~~~l~~~gl~P~v~~~~~~----~~l~   71 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKE---DNQDAVLVRVYGNKTE----LIIDRERELRIHKLLSKHGLAPKLYATFQN----GLIY   71 (235)
T ss_pred             EEEcCCcccceEEEEEcCC---CCCCeEEEEEccCCcc----ceecHHHHHHHHHHHHhCCCCCeEEEEeCC----cEEE
Confidence            4678889999999886421   0246788998754311    1112245888888885333 4556554432    3899


Q ss_pred             eecCCCCh
Q 012762          166 EFCPGGDL  173 (457)
Q Consensus       166 E~~~~~sL  173 (457)
                      ||++|.++
T Consensus        72 e~i~G~~l   79 (235)
T cd05157          72 EFIPGRTL   79 (235)
T ss_pred             EeeCCCcC
Confidence            99998776

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.66  E-value=0.00058  Score=64.89  Aligned_cols=137  Identities=19%  Similarity=0.260  Sum_probs=78.7

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEEEEEee
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSCLLTEF  167 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~lV~E~  167 (457)
                      .+..|-.+.+|+...      ++..+++|+......   ........|.++|+.+...++ .+++....    .++||||
T Consensus         3 ~~~~G~tn~~y~~~~------~~~~~vlR~~~~~~~---~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~   69 (256)
T TIGR02721         3 TLSGGLTNRSWRIEH------PGISFVWRPQSPVCK---ALGVDRQREYQILQALSALGLAPKPILVNE----HWLLVEW   69 (256)
T ss_pred             cCCCcCcCCeEEEEe------CCccEEEeeCCcccc---cccCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEe
Confidence            345688889998762      456788898654311   110123568889998864433 44554432    3689999


Q ss_pred             cCCCChHH--------------HHHh---CC--CCCCCH-HHHHHHHHHH---------HHHHHHHHH--------cCce
Q 012762          168 CPGGDLHV--------------LRQR---QP--DKRFHE-SAVRFYASEV---------VVALEFLHM--------MGII  210 (457)
Q Consensus       168 ~~~~sL~~--------------~~~~---~~--~~~~~~-~~~~~i~~qi---------~~~L~yLH~--------~~ii  210 (457)
                      ++|..+..              ++.+   .+  ...+.. ..+..+..++         ...+..+-.        ..++
T Consensus        70 i~G~~~~~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  149 (256)
T TIGR02721        70 LEGEVITLDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPL  149 (256)
T ss_pred             ccCcccccccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeee
Confidence            99876531              1111   11  111121 1122222121         111222211        2589


Q ss_pred             eecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          211 YRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       211 HrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      |+|+.|.||+++.++ +.|+||+.+....
T Consensus       150 H~Dl~~~Nil~~~~~-~~lIDwE~a~~gd  177 (256)
T TIGR02721       150 HMDVHAYNLVVTPQG-LKLIDWEYASDGD  177 (256)
T ss_pred             cCCCCcCcEEEeCCC-CEEEeccccCcCC
Confidence            999999999999877 7899999875544

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK05231 homoserine kinase; Provisional

Probab=97.63  E-value=0.00053  Score=67.37  Aligned_cols=138  Identities=17%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEE------EEcC
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYAT------LDCP  158 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~------~~~~  158 (457)
                      ++.|+.|....+|+....     .| .+++|++. .     ........|.++++.|..  -.+.+++..      ....
T Consensus        27 ~~~l~~G~~n~~y~v~t~-----~g-~~vLK~~~-~-----~~~~~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~   94 (319)
T PRK05231         27 LKGIAEGIENSNFFLTTT-----QG-EYVLTLFE-R-----LTAEDLPFFLGLMQHLAARGVPVPAPVARRDGAALGELA   94 (319)
T ss_pred             cchhccccccceEEEEeC-----CC-cEEEEEec-c-----CChHHhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeC
Confidence            456778888899987632     33 68899875 1     112233446667766632  224444431      2234


Q ss_pred             CcEEEEEeecCCCChH-----------HHHHh---C-CC--------CCCCH--HHHHH-----------HHHH-HHHHH
Q 012762          159 RWSCLLTEFCPGGDLH-----------VLRQR---Q-PD--------KRFHE--SAVRF-----------YASE-VVVAL  201 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~-----------~~~~~---~-~~--------~~~~~--~~~~~-----------i~~q-i~~~L  201 (457)
                      +..+++|||++|..+.           ..+.+   . ..        ..+..  .....           .+.+ +-..+
T Consensus        95 g~~~~l~~~l~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  174 (319)
T PRK05231         95 GKPAAIVTFLEGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQAALLEAELAAQL  174 (319)
T ss_pred             CEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Confidence            5678999999887541           11111   0 00        00000  00000           1111 11112


Q ss_pred             HHHH-------HcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          202 EFLH-------MMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       202 ~yLH-------~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+.       ..++||+|+++.|||++.+....|+||+.+.
T Consensus       175 ~~~~~~~~~~lp~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        175 AFLASAAWPALPRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             HhhhccccccCCcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            2222       2379999999999999866556899999874

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.41  E-value=0.0013  Score=64.14  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             EEEecccCcceEEEEEEecc--CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCcEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSK--SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRWSCL  163 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~--~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~~~l  163 (457)
                      ++.|..|-...||++.....  ....++.|++|+.....    .......+|.++++.+...+ ..++++++..    .+
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~----~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~   74 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSV----ELLIDRERELVVFARLSERNLGPKLYGIFPN----GR   74 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCC----cceechHHHHHHHHHHHhCCCCCceEEEeCC----Cc
Confidence            45677788889998874310  11235789999975431    11223456888888885333 4566666542    26


Q ss_pred             EEeecCCCChH
Q 012762          164 LTEFCPGGDLH  174 (457)
Q Consensus       164 V~E~~~~~sL~  174 (457)
                      ||||++|..+.
T Consensus        75 v~e~i~G~~l~   85 (302)
T cd05156          75 IEEFIPSRTLT   85 (302)
T ss_pred             hhheeCCCcCC
Confidence            89999887763

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PLN02236 choline kinase

Probab=97.33  E-value=0.0019  Score=64.28  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSCL  163 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~l  163 (457)
                      .-+..|-.|-...+|++.........++.|++|+.....   ....++ ..|.++++.+..-++ .++++.+..+    .
T Consensus        39 ~~i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t---~~~idR-~~E~~~~~~l~~~gl~P~~~~~~~~g----~  110 (344)
T PLN02236         39 LQVIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGV---ELFFDR-DDEIRTFECMSRHGQGPRLLGRFPNG----R  110 (344)
T ss_pred             EEEEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCC---Ceeech-HHHHHHHHHHHHcCCCCceEEEECCc----e
Confidence            334456558899999987542222245689999986532   222333 558889988854444 4666766432    5


Q ss_pred             EEeecCCCChHHH-------H-------H---hCC--CC--CCCHHHHHHHHHHH-----------------HHHHHHH-
Q 012762          164 LTEFCPGGDLHVL-------R-------Q---RQP--DK--RFHESAVRFYASEV-----------------VVALEFL-  204 (457)
Q Consensus       164 V~E~~~~~sL~~~-------~-------~---~~~--~~--~~~~~~~~~i~~qi-----------------~~~L~yL-  204 (457)
                      |+||+++.+|...       .       .   ...  ..  ......+..+..++                 ...+..| 
T Consensus       111 v~efi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~  190 (344)
T PLN02236        111 VEEFIHARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLE  190 (344)
T ss_pred             EEEeeCCCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHH
Confidence            8999988776311       1       0   000  01  11122232332221                 1111122 


Q ss_pred             ---H----HcCceeecCCCCCeEEcc-CCCEEEeccCCCcC
Q 012762          205 ---H----MMGIIYRDLKPENVLVRS-DGHIMLTDFDLSLK  237 (457)
Q Consensus       205 ---H----~~~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~  237 (457)
                         .    ...++|+|+++.|||++. ++.+.++||..+..
T Consensus       191 ~~~~~~~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        191 KELSGDDQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             HHhcccCCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence               1    235899999999999986 46899999998753

>PLN02756 S-methyl-5-thioribose kinase

Probab=97.28  E-value=0.0041  Score=62.56  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-hh---hhHHHHHHHHHHHHHHcC---CCCCceEEEEEEcC
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VS---RNKESRARIEREILEMLD---HPFLPTLYATLDCP  158 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-~~---~~~~~~~~~E~~il~~l~---H~nIv~l~~~~~~~  158 (457)
                      ..+.||.|....||+....      +..|+||.-..... ..   .....+...|.+.|+.+.   ..++.+++.++.  
T Consensus        36 ~~~eiggGn~N~VyrV~~~------~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--  107 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS------SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--  107 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC------CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--
Confidence            4778999999999997742      34588888653221 11   124566667888887764   357888998877  


Q ss_pred             CcEEEEEeecCC
Q 012762          159 RWSCLLTEFCPG  170 (457)
Q Consensus       159 ~~~~lV~E~~~~  170 (457)
                      +..+++||++++
T Consensus       108 d~~vlvME~L~~  119 (418)
T PLN02756        108 TMALIGMRYLEP  119 (418)
T ss_pred             CCCEEEEeecCC
Confidence            346789999966

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.27  E-value=0.0025  Score=61.36  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=26.6

Q ss_pred             CceeecCCCCCeEEccCCC-EEEeccCCCcCCC
Q 012762          208 GIIYRDLKPENVLVRSDGH-IMLTDFDLSLKGD  239 (457)
Q Consensus       208 ~iiHrDIKp~NIll~~~~~-vkl~DFG~s~~~~  239 (457)
                      .++|+|+++.|||++.++. .-|+||+.+....
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iGD  218 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAKVGD  218 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhcccCC
Confidence            4899999999999987555 5699999886654

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.16  E-value=0.0048  Score=61.02  Aligned_cols=76  Identities=18%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhh----hhhhHHHHHHHHHHHHHHcC--CC-CCceEEEEEEcCCcE
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL----VSRNKESRARIEREILEMLD--HP-FLPTLYATLDCPRWS  161 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~----~~~~~~~~~~~E~~il~~l~--H~-nIv~l~~~~~~~~~~  161 (457)
                      .||.|....||++...    ..++.|+||.-...--    .......+...|.++|+...  -| .++++|.+  +.+..
T Consensus         2 EigdGnlN~VfrV~~~----~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~~   75 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQ----EGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEMA   75 (370)
T ss_pred             cCCCCceEEEEEEEcC----CCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--ccccc
Confidence            5799999999999853    2235788887643221    12445677778999998763  24 45556555  33445


Q ss_pred             EEEEeecCC
Q 012762          162 CLLTEFCPG  170 (457)
Q Consensus       162 ~lV~E~~~~  170 (457)
                      .+|||+++.
T Consensus        76 ~~vMEdL~~   84 (370)
T TIGR01767        76 VTVMEDLSH   84 (370)
T ss_pred             eehHhhCcc
Confidence            699999854

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.06  E-value=0.0011  Score=67.26  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             ccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-----------CCCChHHHHHHHHHhhhCCCCCCCC
Q 012762          337 NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-----------PSVPGPAKDLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       337 ~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~~L~~dP~~Rps~  405 (457)
                      +++|||++|.++.|+.-|...+....+.+....+..- +..+..           ..++.-..+++.+|+-..|..||. 
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~-~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l-  187 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKY-YTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPL-  187 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccc-
Confidence            3999999999999999998877665444443333321 111111           124455778999999999999998 


Q ss_pred             CcChHHHhcCCCCCCC
Q 012762          406 KMGATAIKRHQFFNGV  421 (457)
Q Consensus       406 ~~~~~~ll~hp~f~~~  421 (457)
                         ..++.+++-|..+
T Consensus       188 ---~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  188 ---PMELSKRCSFTEV  200 (725)
T ss_pred             ---hhHHhcCccHHHH
Confidence               8899999888764

>PRK12396 5-methylribose kinase; Reviewed

Probab=97.05  E-value=0.0046  Score=61.86  Aligned_cols=78  Identities=19%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh---hhhhHHHHHHHHHHHHHHcC--CC-CCceEEEEEEcCCc
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL---VSRNKESRARIEREILEMLD--HP-FLPTLYATLDCPRW  160 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~~~E~~il~~l~--H~-nIv~l~~~~~~~~~  160 (457)
                      .+.||.|.-.-||++.+..    .+..|+||--...--   .......+...|.++|+.+.  -| .+++++.+-  ...
T Consensus        34 ~~eigdGnlN~VfrV~~~~----~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~D--~e~  107 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQ----KNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLFD--SVM  107 (409)
T ss_pred             eeEcCCCceEEEEEEeeCC----CCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEEC--cHH
Confidence            7789999999999998631    245688886533211   22445678888999998873  34 466666653  334


Q ss_pred             EEEEEeecCC
Q 012762          161 SCLLTEFCPG  170 (457)
Q Consensus       161 ~~lV~E~~~~  170 (457)
                      ..+|||+++.
T Consensus       108 ~~~vMEdL~~  117 (409)
T PRK12396        108 NCCVMEDLSD  117 (409)
T ss_pred             hhHHHHhCcc
Confidence            5689998854

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.94  E-value=0.0079  Score=59.46  Aligned_cols=146  Identities=13%  Similarity=0.184  Sum_probs=82.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~  160 (457)
                      +++.+.. |..|-...+|++...... .++..|++|+.....   ....+ ..+|..+++.+..-++ .++++++.. + 
T Consensus        15 ~~i~i~~-l~gGlTN~~~~v~~~~~~-~~~~~~v~Ri~g~~t---~~~Id-R~~E~~il~~l~~~gl~P~~l~~~~~-G-   86 (330)
T PLN02421         15 SDFSVER-ISGGITNLLLKVSVKEEN-GNEVSVTVRLFGPNT---DYVID-RERELQAIKYLSAAGFGAKLLGVFGN-G-   86 (330)
T ss_pred             CceEEEE-eCCcccceEEEEEecCCC-CCCceEEEEEecCCc---CeEec-hHHHHHHHHHHHhcCCCCceeEEeCC-c-
Confidence            3455544 444888899988754211 123478899886531   11222 2458889988865555 466766632 2 


Q ss_pred             EEEEEeecCCCChHH-------HH-------Hh-CC----CC-CC-CHHHHHHHHHHH----------------------
Q 012762          161 SCLLTEFCPGGDLHV-------LR-------QR-QP----DK-RF-HESAVRFYASEV----------------------  197 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~-------~~-------~~-~~----~~-~~-~~~~~~~i~~qi----------------------  197 (457)
                        +|.+|++|..|..       .+       ++ +.    .. .. ....+..+..++                      
T Consensus        87 --~i~~fi~g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l  164 (330)
T PLN02421         87 --MIQSFINARTLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEEL  164 (330)
T ss_pred             --EeehhhcCCCCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHH
Confidence              5899998876521       01       11 11    00 01 122233332221                      


Q ss_pred             HHHHHHHH----Hc----CceeecCCCCCeEEcc-CCCEEEeccCCCcC
Q 012762          198 VVALEFLH----MM----GIIYRDLKPENVLVRS-DGHIMLTDFDLSLK  237 (457)
Q Consensus       198 ~~~L~yLH----~~----~iiHrDIKp~NIll~~-~~~vkl~DFG~s~~  237 (457)
                      ..-+..+.    ..    -++|+|+.+.|||++. ++.++++||+.+..
T Consensus       165 ~~~~~~l~~~~~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        165 RDEIVELKEITDSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            11122222    11    2899999999999974 57899999998743

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.93  E-value=0.022  Score=55.62  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=25.3

Q ss_pred             cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       207 ~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .+++|+|+.+.||+++. +.+.|+||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            47899999999999987 678999999654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.89  E-value=0.013  Score=57.19  Aligned_cols=151  Identities=12%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEEEEcCC--
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYATLDCPR--  159 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~~~~~~--  159 (457)
                      ..+++.+-.|..-.+|....      +++.+++. ... ............+|.++++.+.-  --+...++.+..+.  
T Consensus        27 ~~~v~~~~~G~sn~t~~~~~------~~~~~vlR-~P~-~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g   98 (321)
T COG3173          27 LLIVEEISGGWSNDTFRLGD------TGQKYVLR-KPP-RGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLG   98 (321)
T ss_pred             CceeeeccCCcccceEEEec------CCceEEEe-cCC-ccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCC
Confidence            34445554444444554442      36677777 321 11112233445568888887743  33455566665554  


Q ss_pred             cEEEEEeecCCCCh---------H-HHHH--------h-C--C------C---CCCCHHHHHHHHHH-------------
Q 012762          160 WSCLLTEFCPGGDL---------H-VLRQ--------R-Q--P------D---KRFHESAVRFYASE-------------  196 (457)
Q Consensus       160 ~~~lV~E~~~~~sL---------~-~~~~--------~-~--~------~---~~~~~~~~~~i~~q-------------  196 (457)
                      ..|.||+|++|..+         . .+..        . +  .      .   ..+....+..+..+             
T Consensus        99 ~pf~v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p  178 (321)
T COG3173          99 TPFYVMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIP  178 (321)
T ss_pred             CceEEEEEecceeccCcCCcccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCc
Confidence            66999999988432         1 1111        0 0  0      0   00111111111111             


Q ss_pred             -HHHHHHHHHHc--------CceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          197 -VVVALEFLHMM--------GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       197 -i~~~L~yLH~~--------~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                       +..-..+|+.+        .++|+|+++.||+++.++-+-++||+++...++..
T Consensus       179 ~~~~~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lGDP~~  233 (321)
T COG3173         179 LADRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELATLGDPLE  233 (321)
T ss_pred             hHHHHHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCeeEEEeccccccCCcHH
Confidence             12234555543        48999999999999988889999999987766543

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.78  E-value=0.0033  Score=57.85  Aligned_cols=30  Identities=33%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             cCceeecCCCCCeEE-ccCCCEEEeccCCCc
Q 012762          207 MGIIYRDLKPENVLV-RSDGHIMLTDFDLSL  236 (457)
Q Consensus       207 ~~iiHrDIKp~NIll-~~~~~vkl~DFG~s~  236 (457)
                      ..++|+|+.+.|||+ ..++.++|+||..+.
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            359999999999999 788999999998764

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PTZ00384 choline kinase; Provisional

Probab=96.48  E-value=0.019  Score=57.75  Aligned_cols=84  Identities=12%  Similarity=0.122  Sum_probs=48.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccC--CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKS--SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCP  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~  158 (457)
                      +++.+. .|..|-...+|++.....+  ....+.|.+++....   .....+ -.+|.++++.+...+ -.++++.+.. 
T Consensus        51 ~~i~i~-~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~---~~l~Id-R~~E~~i~~~Ls~~glgP~l~~~f~~-  124 (383)
T PTZ00384         51 EFIEIK-KMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTY---NSLVID-NDLQYNIAKLLGDNNFGPKIIGRFGD-  124 (383)
T ss_pred             ccEEEE-EeCCcccceEEEEEecCCCCCccccceEEEEeccCC---CceEec-cHHHHHHHHHHHhCCCCCeEEEecCC-
Confidence            344444 5555999999999754211  001122444443211   111122 244889999996544 4667777753 


Q ss_pred             CcEEEEEeecCCCChH
Q 012762          159 RWSCLLTEFCPGGDLH  174 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~  174 (457)
                         ++|.||++|..|.
T Consensus       125 ---g~l~efIeGr~l~  137 (383)
T PTZ00384        125 ---FTIQEWVEGNTMG  137 (383)
T ss_pred             ---EEEEEEeccccCC
Confidence               5999999998773

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.46  E-value=0.0079  Score=58.85  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=56.9

Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      .+..+.|++|++- |+.|... +     .-..+++..++++.+.-++-+... ..=|||+..+||||+ +|+|.|+||-+
T Consensus       296 de~~y~yl~~kdh-gt~is~i-k-----~~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-~GnvtLIDfkl  367 (488)
T COG5072         296 DETLYLYLHFKDH-GTPISII-K-----ADRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-EGNVTLIDFKL  367 (488)
T ss_pred             CCceEEEEEEecC-Cceeeee-e-----cccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-cCceEEEEeee
Confidence            3445778999987 7777422 2     234567778888877777666643 689999999999999 99999999999


Q ss_pred             CcC
Q 012762          235 SLK  237 (457)
Q Consensus       235 s~~  237 (457)
                      ++.
T Consensus       368 sRl  370 (488)
T COG5072         368 SRL  370 (488)
T ss_pred             eec
Confidence            873

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.25  E-value=0.015  Score=57.69  Aligned_cols=61  Identities=26%  Similarity=0.238  Sum_probs=45.8

Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceeecCCCCCeEEccC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~iiHrDIKp~NIll~~~  224 (457)
                      ..|+-+|..|.++..+++.   ...++...+.++.-...||.-|- -.+++|.|++|.||++...
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~---~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~  381 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKW---KSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFN  381 (565)
T ss_pred             ceeeeeccccccHHhhhhc---ccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEec
Confidence            3567778888898888776   44666677777776677765544 4589999999999999643

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=96.18  E-value=0.13  Score=50.36  Aligned_cols=30  Identities=10%  Similarity=0.067  Sum_probs=27.4

Q ss_pred             CceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       208 ~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++||+|+.+.|||++.++.+.++||..+..
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCCEEEEEhhhccc
Confidence            799999999999999999999999987654

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=96.17  E-value=0.075  Score=51.34  Aligned_cols=76  Identities=24%  Similarity=0.259  Sum_probs=48.2

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC---CCCCceEEEEEEcCCc
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD---HPFLPTLYATLDCPRW  160 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~---H~nIv~l~~~~~~~~~  160 (457)
                      .+-.+.|+.|....+|...      ..+..|.||+-..      .....+..|.+-|+.|.   --.+++++++....+.
T Consensus        19 i~~~~~v~GG~i~~a~~~~------~~~~~~FvK~~~~------~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~   86 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD------TDGGSYFVKVNSE------SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDD   86 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE------TTS-EEEEEEEEG------GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSC
T ss_pred             eeeeEecCCCChhheEEEE------CCCccEEEEecCh------hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCC
Confidence            4456788999999999876      2667888998752      23345677888888883   4457899999988878


Q ss_pred             EEEEEeecCCC
Q 012762          161 SCLLTEFCPGG  171 (457)
Q Consensus       161 ~~lV~E~~~~~  171 (457)
                      .||||||++.+
T Consensus        87 ~fLlle~l~~~   97 (288)
T PF03881_consen   87 AFLLLEFLEMG   97 (288)
T ss_dssp             CEEEEE-----
T ss_pred             ceEEEEeecCC
Confidence            89999999776

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK06148 hypothetical protein; Provisional

Probab=96.02  E-value=0.074  Score=60.46  Aligned_cols=139  Identities=20%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--CCC--CceEEE--------E
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HPF--LPTLYA--------T  154 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--H~n--Iv~l~~--------~  154 (457)
                      ++.|+ |..-.+|+....     +|..|++|+.+...     .......|.++|..|.  ++.  +.+++-        .
T Consensus        30 ~~~L~-s~~d~nf~v~~~-----~g~~yVLKi~~~~~-----~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~   98 (1013)
T PRK06148         30 ATPLD-GERDLNFRLTTD-----DGADYILKIVNPSE-----PRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLAS   98 (1013)
T ss_pred             EeecC-CcCCceEEEEeC-----CCCeEEEEEcCCcc-----chhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEE
Confidence            35675 456788887642     56789999997542     2233344666776662  223  333322        1


Q ss_pred             EEc-CC--cEEEEEeecCCCChHHH-------HHh--------------C--C--CCCCCH-----------------HH
Q 012762          155 LDC-PR--WSCLLTEFCPGGDLHVL-------RQR--------------Q--P--DKRFHE-----------------SA  189 (457)
Q Consensus       155 ~~~-~~--~~~lV~E~~~~~sL~~~-------~~~--------------~--~--~~~~~~-----------------~~  189 (457)
                      ... ++  +.+.+|+|++|..|...       +..              .  +  ...+.+                 ..
T Consensus        99 v~~~~G~~~~vrLl~~l~G~~l~~~~~~t~~~~~~lG~~larlh~al~~F~~p~~~r~~~Wdl~~~~~l~~~l~~i~d~~  178 (1013)
T PRK06148         99 AQDPDGEPRLLRLLSWLPGTPLAEAAPRTEALLDNLGRALGRLDRALQGFMHPGALRDLDWDLRHAGRARDRLHFIDDPE  178 (1013)
T ss_pred             eecCCCceEEEEEEeccCCCcHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccccccccchhhhhhhhhcCCHH
Confidence            111 22  46778999999877541       110              0  0  011111                 11


Q ss_pred             HHHHHHHHHHHHHH-----HH--HcCceeecCCCCCeEEccCC--CE-EEeccCCCc
Q 012762          190 VRFYASEVVVALEF-----LH--MMGIIYRDLKPENVLVRSDG--HI-MLTDFDLSL  236 (457)
Q Consensus       190 ~~~i~~qi~~~L~y-----LH--~~~iiHrDIKp~NIll~~~~--~v-kl~DFG~s~  236 (457)
                      .+.++.+++..+.-     +.  ..++||+|+.+.|||++.++  .+ -|+|||-+.
T Consensus       179 ~r~~l~~~~~~~~~~v~p~l~~Lp~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        179 DRALVERFLARFERNVAPRLAALPAQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            22233334333321     21  24799999999999999775  45 499999764

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=95.94  E-value=0.11  Score=50.27  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             cccCcceEEEEEEec----cCCCCCceEEEEEeehhhhhhh--hHHHHHHHHHHHHHHc-------C--C----CCCceE
Q 012762           91 GSGDIGSVYLVQLKS----KSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEML-------D--H----PFLPTL  151 (457)
Q Consensus        91 G~G~fg~Vy~a~~~~----~~~~~~~~vAvK~~~~~~~~~~--~~~~~~~~E~~il~~l-------~--H----~nIv~l  151 (457)
                      |.|-.|.+|++....    ........++||..........  .....+.+|+.+.+.+       .  +    ..+.++
T Consensus         2 Gd~y~s~~~rv~v~~~~~~~~~~~~~s~ivK~~p~~~~~~~~~~~~~~f~~E~~fY~~~~p~l~~~~~~~~~~~~~~P~~   81 (294)
T PF02958_consen    2 GDNYLSDMYRVTVTYELKGDGKNEPLSLIVKSPPTNPSRREFLREMGSFRREIFFYRELLPELEELQKEAGDPFKFFPKC   81 (294)
T ss_pred             CCcceeEEEEEEEEEEEccCCCceEEEEEEEeCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccceeeceE
Confidence            788889999987754    2233445788998862222111  2345677787765543       1  1    235666


Q ss_pred             EEEEEcCCcEEEEEeec
Q 012762          152 YATLDCPRWSCLLTEFC  168 (457)
Q Consensus       152 ~~~~~~~~~~~lV~E~~  168 (457)
                      +....+....+||||-+
T Consensus        82 ~~~~~~~~~~~lvlEDL   98 (294)
T PF02958_consen   82 YYADEDPGDEVLVLEDL   98 (294)
T ss_pred             EEeccCCCceeeehhhh
Confidence            66665555678999855

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.86  E-value=0.22  Score=49.05  Aligned_cols=71  Identities=13%  Similarity=0.015  Sum_probs=41.6

Q ss_pred             cCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEE---E--EEEcCCcEEEEE
Q 012762           93 GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLY---A--TLDCPRWSCLLT  165 (457)
Q Consensus        93 G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~---~--~~~~~~~~~lV~  165 (457)
                      +.-..||+....     ++..+++|+......    ....+..|.+.+..|..  -.|+...   +  ....++..+.|+
T Consensus        36 s~eN~vy~v~~~-----~~~~~vlKv~r~~~~----~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~  106 (325)
T PRK11768         36 SYENRVYQFGDE-----DGRRVVAKFYRPERW----SDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALF  106 (325)
T ss_pred             cccceEEEEecC-----CCCEEEEEEcCcccC----CHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEE
Confidence            334678877642     566799999854321    23445567887777632  1122211   1  223345678899


Q ss_pred             eecCCCC
Q 012762          166 EFCPGGD  172 (457)
Q Consensus       166 E~~~~~s  172 (457)
                      ++++|..
T Consensus       107 ~~~~G~~  113 (325)
T PRK11768        107 PRRGGRA  113 (325)
T ss_pred             eeeCCCC
Confidence            9998764

>PTZ00296 choline kinase; Provisional

Probab=95.74  E-value=0.15  Score=52.50  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCC----CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEE
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSS----NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATL  155 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~----~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~  155 (457)
                      .++. -++.|..|-.-.+|++.......    ..++.|.+++.....   ..... ...|..+++.+...+| .++++.+
T Consensus       105 ~~~I-~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~t---e~lId-R~~E~~v~~~ls~~gi~P~l~~~f  179 (442)
T PTZ00296        105 EDDV-RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDV---DELYN-PISEFEVYKTMSKYRIAPQLLNTF  179 (442)
T ss_pred             cccE-EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCc---cceeC-HHHHHHHHHHHHHCCCCCceEEEe
Confidence            3455 56677778889999997542111    124679999986532   11222 2448888888755454 3566665


Q ss_pred             EcCCcEEEEEeecCCCCh
Q 012762          156 DCPRWSCLLTEFCPGGDL  173 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL  173 (457)
                      .    ...|.||++|..|
T Consensus       180 ~----gg~I~efi~g~~l  193 (442)
T PTZ00296        180 S----GGRIEEWLYGDPL  193 (442)
T ss_pred             C----CCEEEEeeCCccC
Confidence            3    2468999988755

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=95.08  E-value=0.055  Score=49.57  Aligned_cols=85  Identities=13%  Similarity=0.077  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH--cC
Q 012762          131 SRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM--MG  208 (457)
Q Consensus       131 ~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~--~~  208 (457)
                      ..+..+.++++++.  .|+++..-  ++-.+-++.|+|.....           .+..    ++.-=+.+|.-.|+  .+
T Consensus       103 ~~y~nky~v~Armh--GilrL~ND--n~~~yGvIlE~Cy~~~i-----------~~~N----~i~agi~~L~~fH~~~~~  163 (308)
T PF07387_consen  103 ALYFNKYRVFARMH--GILRLKND--NNYKYGVILERCYKIKI-----------NFSN----FITAGIKDLMDFHSENQH  163 (308)
T ss_pred             hhhhhhhhHHHHhh--heeEeecC--CCceeEEEEeeccCccc-----------chhH----HHHHhHHHHHHhhccCCC
Confidence            44567888888775  57777732  33345689999932111           1111    11112567888893  47


Q ss_pred             ceeecCCCCCeEEccCCCEEEeccCC
Q 012762          209 IIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       209 iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      .+|+|-.|+||+.++.|.+||.|=+.
T Consensus       164 ~lHGD~np~NiM~D~~G~lKlVDP~~  189 (308)
T PF07387_consen  164 CLHGDCNPDNIMCDKFGYLKLVDPVC  189 (308)
T ss_pred             eecCCCChhheeecCCCCEEecChhh
Confidence            99999999999999999999999875

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-36
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		7e-32
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		7e-32
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		9e-32
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		1e-31
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		4e-31
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		4e-25
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		6e-15
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		5e-25
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		6e-18
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-24
3g51_A	325	Structural Diversity Of The Active Conformation Of		2e-24
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-24
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-24
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		2e-24
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		2e-21
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		2e-23
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		3e-19
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-23
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		3e-19
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-23
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		4e-19
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		2e-23
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		3e-19
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		2e-23
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		5e-19
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		2e-23
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		4e-19
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		2e-23
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		4e-19
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		4e-23
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-15
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		6e-23
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		2e-15
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		7e-23
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-15
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		7e-23
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-15
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		9e-23
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		6e-15
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-22
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-15
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-22
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		6e-15
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		1e-22
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		2e-14
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		1e-22
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		6e-15
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-22
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		6e-15
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-22
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-15
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-22
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-15
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-22
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		4e-15
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		1e-22
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		6e-15
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-22
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-15
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-22
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		4e-15
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-22
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		4e-15
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-22
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-15
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		1e-22
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		2e-19
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		1e-22
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		2e-19
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		2e-22
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		8e-16
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		2e-22
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		2e-19
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		2e-22
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		2e-19
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-22
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-19
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-22
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-15
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		7e-22
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		6e-15
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		8e-22
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		4e-19
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		8e-22
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		7e-19
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-21
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-16
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-21
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		7e-17
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-21
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-16
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		3e-21
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		5e-17
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		3e-21
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		8e-17
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		3e-21
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		6e-17
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-21
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		8e-17
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-21
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		8e-17
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		3e-21
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		3e-16
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		4e-21
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		5e-17
4ae9_A	343	Structure And Function Of The Human Sperm-specific		4e-21
4ae9_A	343	Structure And Function Of The Human Sperm-specific		7e-17
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-21
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-17
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		5e-21
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		8e-17
4ae6_A	343	Structure And Function Of The Human Sperm-specific		5e-21
4ae6_A	343	Structure And Function Of The Human Sperm-specific		7e-17
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		5e-21
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		8e-17
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		5e-21
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		8e-17
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		5e-21
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		1e-16
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		5e-21
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		8e-17
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		5e-21
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		9e-17
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		5e-21
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		8e-17
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		7e-21
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		8e-17
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		7e-21
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		8e-17
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		7e-21
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		7e-17
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		7e-21
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-16
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		7e-21
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		8e-17
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		7e-21
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		8e-17
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		9e-21
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		8e-17
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		9e-21
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		8e-17
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		1e-20
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		6e-18
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-20
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		7e-17
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		2e-20
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		8e-17
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-20
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		5e-17
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-20
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		9e-16
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		2e-20
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		4e-16
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-20
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		5e-16
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-20
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		5e-16
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-20
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		7e-17
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-20
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		7e-17
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		2e-20
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		9e-17
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		2e-20
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		8e-17
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-20
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		8e-17
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-20
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-16
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		2e-20
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		8e-17
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-20
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		5e-17
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-20
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		7e-17
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-20
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		8e-17
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-20
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		7e-18
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		2e-20
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		7e-17
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-20
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		8e-17
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		3e-20
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		8e-17
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-20
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		1e-16
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		4e-20
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		7e-17
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		4e-20
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		8e-17
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		8e-20
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		8e-17
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		1e-19
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-19
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		3e-19
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		3e-19
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		2e-15
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		3e-19
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		2e-15
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		3e-19
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		3e-19
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		2e-15
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		4e-19
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		4e-19
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		4e-19
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		4e-19
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		4e-19
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		4e-19
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		4e-19
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		5e-17
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		4e-19
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		5e-19
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		5e-19
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		7e-19
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		5e-14
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		1e-18
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-18
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		7e-07
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		3e-18
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		1e-15
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		1e-17
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		1e-11
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-17
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-11
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		1e-17
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		1e-11
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		1e-17
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		1e-11
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		1e-17
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		2e-15
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		1e-17
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-17
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		4e-16
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		2e-17
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-17
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-17
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		3e-17
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		8e-17
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		3e-17
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		3e-17
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		3e-17
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		4e-17
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		7e-17
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		9e-17
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		1e-16
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		2e-16
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		1e-15
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		2e-16
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		1e-15
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		2e-16
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-16
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		6e-16
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		7e-16
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		9e-10
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		9e-16
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-15
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-15
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-15
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-15
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		3e-15
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-09
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		3e-15
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		4e-15
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		4e-15
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		4e-15
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		4e-15
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		4e-15
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		4e-15
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-15
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		4e-15
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		4e-15
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		4e-15
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-15
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		5e-15
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		9e-10
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-15
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		1e-09
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-15
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		5e-15
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		5e-15
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		5e-15
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		6e-15
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-15
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		7e-15
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		2e-11
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-15
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-11
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-15
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-11
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		7e-15
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		8e-15
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		4e-11
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		8e-15
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		2e-09
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-14
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-14
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-14
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		1e-14
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-14
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		1e-14
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		1e-14
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-14
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-13
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-13
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-07
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		3e-13
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		3e-13
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		4e-13
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		4e-13
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		6e-13
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		4e-06
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		6e-13
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		4e-06
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		6e-13
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-06
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		7e-13
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		3e-06
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		9e-13
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		9e-13
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		9e-13
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-12
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		8e-06
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		1e-12
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-12
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		4e-08
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		2e-12
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		2e-12
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-12
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		4e-12
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		9e-12
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		9e-12
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		9e-12
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-11
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-11
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-04
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-11
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-11
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		2e-11
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-11
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-11
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		2e-11
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		5e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-11
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		2e-11
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		4e-04
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		3e-11
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		3e-11
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		3e-11
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		4e-11
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		4e-11
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		4e-11
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		6e-11
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		6e-11
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		4e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		1e-10
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		2e-10
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		2e-10
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-10
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-10
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		2e-10
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-10
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-06
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		3e-10
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		3e-10
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		4e-10
3soa_A	444	Full-Length Human Camkii Length = 444		5e-10
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		5e-10
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		5e-10
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		5e-10
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		6e-10
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-04
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		8e-10
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		8e-10
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		8e-10
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		8e-10
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		9e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		9e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		9e-06
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		1e-09
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		1e-09
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-09
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-09
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		2e-09
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-09
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		2e-09
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-09
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		3e-09
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		3e-09
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		3e-09
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		4e-09
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		6e-09
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		6e-09
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		7e-09
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		8e-09
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		6e-08
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		9e-09
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		9e-09
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		9e-09
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		9e-09
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		9e-09
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		9e-09
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		1e-08
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-08
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		1e-08
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		1e-08
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		1e-08
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		1e-08
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		1e-08
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		4e-04
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		1e-08
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		3e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		1e-08
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		1e-08
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		1e-08
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		1e-08
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		1e-08
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		1e-08
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		1e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		2e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-08
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		2e-08
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		2e-05
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		2e-08
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		3e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-08
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-08
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-08
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		3e-08
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		5e-07
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		1e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		4e-08
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-06
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		4e-08
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		7e-04
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-08
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-08
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		5e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		5e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		8e-07
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-08
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		4e-07
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		6e-08
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		9e-07
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		6e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		8e-07
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		6e-08
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		2e-04
3kk9_A	282	Camkii Substrate Complex B Length = 282		6e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		8e-07
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		8e-08
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		6e-05
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		8e-08
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		8e-08
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		6e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		9e-08
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		9e-08
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		9e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		9e-08
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		9e-08
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		9e-08
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		9e-08
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		1e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		1e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		1e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-07
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		1e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		1e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		1e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		1e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		1e-07
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		1e-07
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		3e-05
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		1e-07
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		3e-05
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		1e-07
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		4e-05
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-07
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		2e-07
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		8e-06
4fie_A	423	Full-Length Human Pak4 Length = 423		2e-07
4fie_A	423	Full-Length Human Pak4 Length = 423		4e-05
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-07
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		8e-06
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		2e-07
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		2e-07
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		3e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-07
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		3e-07
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		3e-07
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		7e-06
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-07
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		3e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-07
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		3e-07
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		3e-07
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		7e-05
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		3e-07
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		5e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		3e-07
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		3e-07
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		3e-07
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		7e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		3e-07
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		8e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		4e-07
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		4e-07
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		4e-07
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		3e-05
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		4e-07
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		7e-07
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-07
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		6e-07
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-07
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		6e-07
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		6e-07
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		6e-07
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		6e-07
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		7e-07
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		7e-07
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		7e-07
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		7e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		7e-07
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		7e-07
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		8e-07
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		8e-07
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		8e-07
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		9e-07
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		9e-07
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		9e-07
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		1e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-06
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		1e-06
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-06
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		1e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		1e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		1e-06
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		1e-06
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		1e-06
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		1e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-06
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-06
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-06
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		2e-06
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-06
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-06
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-06
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-06
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-06
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-06
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-06
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-06
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-06
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-06
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-06
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-06
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-06
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		3e-06
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		3e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-06
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		4e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		4e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		4e-06
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		4e-06
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-06
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		4e-06
4f99_A	361	Human Cdc7 Kinase In Complex With Dbf4 And Nucleoti		5e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-06
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		5e-06
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		5e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		5e-06
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		6e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-06
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		6e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		6e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		7e-06
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		7e-06
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		8e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		8e-06
3a7f_A	303	Human Mst3 Kinase Length = 303		8e-06
3a7f_A	303	Human Mst3 Kinase Length = 303		9e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		8e-06
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		9e-06
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		9e-06
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		9e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		9e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		7e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-05
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-05
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		8e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-05
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		1e-05
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		1e-05
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		1e-05
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		1e-05
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-05
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		1e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-05
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-05
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-05
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		1e-05
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		2e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-05
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		2e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-05
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		2e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-05
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		2e-05
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		2e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		2e-05
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-05
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		2e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-05
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		3e-05
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		3e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-05
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		3e-05
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		3e-05
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		3e-05
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		3e-05
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		3e-05
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		3e-05
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		3e-05
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		4e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		3e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		4e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		4e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		3e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		4e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		4e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		5e-05
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		5e-05
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		4e-04
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		5e-05
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		5e-05
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		4e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		5e-05
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		5e-05
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		5e-05
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		6e-05
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		6e-05
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		7e-05
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		7e-05
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-05
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		8e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		8e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		8e-05
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		8e-05
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		8e-05
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		8e-05
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-05
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		4e-04
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		8e-05
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		9e-05
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		9e-05
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		9e-05
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		9e-05
2oza_A	356	Structure Of P38alpha Complex Length = 356		9e-05
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		9e-05
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		9e-05
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		9e-05
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		9e-05
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		9e-05
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		1e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-04
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		1e-04
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		1e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		1e-04
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		1e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-04
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		1e-04
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		1e-04
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		4e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		1e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		1e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		1e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-04
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		1e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		1e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		1e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		1e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-04
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		1e-04
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		7e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		2e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		2e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-04
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-04
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		2e-04
4exu_A	371	Mapk13, Inactive Form Length = 371		2e-04
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		2e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-04
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		2e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-04
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		2e-04
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		2e-04
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		2e-04
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		2e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		2e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		2e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		3e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		2e-04
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		2e-04
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		2e-04
4fl3_A	635	Structural And Biophysical Characterization Of The		2e-04
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		2e-04
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		2e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-04
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		2e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-04
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		2e-04
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		2e-04
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		2e-04
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		2e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		2e-04
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		2e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		3e-04
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		3e-04
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		3e-04
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		3e-04
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		3e-04
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		3e-04
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		3e-04
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		3e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-04
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		3e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		3e-04
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		3e-04
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		3e-04
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		3e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		3e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		4e-04
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-04
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		4e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-04
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		4e-04
3gni_B	389	Structure Of Strad And Mo25 Length = 389		4e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		4e-04
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		4e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-04
2wtk_B	373	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		4e-04
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		4e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		4e-04
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		4e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		4e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-04
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		4e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-04
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		4e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		5e-04
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		5e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		5e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-04
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		5e-04
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		5e-04
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		5e-04
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		5e-04
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		5e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		5e-04
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		5e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		5e-04
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		5e-04
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		5e-04
3hec_A	348	P38 In Complex With Imatinib Length = 348		5e-04
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		5e-04
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		6e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		6e-04
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		6e-04
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		6e-04
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		6e-04
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		6e-04
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		6e-04
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		6e-04
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		6e-04
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		6e-04
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		6e-04
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		6e-04
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		6e-04
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		6e-04
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-04
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		6e-04
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		6e-04
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		6e-04
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		6e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		6e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		6e-04
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		6e-04
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		6e-04
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		6e-04
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		6e-04
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		6e-04
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		6e-04
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		6e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		6e-04
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		6e-04
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		6e-04
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		6e-04
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		6e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-04
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		6e-04
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		7e-04
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		7e-04
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		7e-04
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		7e-04
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		7e-04
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		7e-04
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		7e-04
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		7e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		7e-04
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		7e-04
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		7e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		7e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		8e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		7e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		8e-04
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		7e-04
3bi6_A	287	Wee1 Kinase Complex With Inhibitor Pd352396 Length		7e-04
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		7e-04
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		7e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		7e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		7e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		8e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		7e-04
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		7e-04
1x8b_A	289	Structure Of Human Wee1a Kinase: Kinase Domain Comp		7e-04
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		7e-04
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		7e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		8e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		8e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		8e-04
2in6_A	287	Wee1 Kinase Complex With Inhibitor Pd311839 Length		8e-04
2oza_B	366	Structure Of P38alpha Complex Length = 366		8e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		8e-04
2z2w_A	285	Humand Wee1 Kinase Complexed With Inhibitor Pf03357		8e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		8e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		8e-04
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		8e-04
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		8e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		9e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		9e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		9e-04

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 169/389 (43%), Gaps = 85/389 (21%)
Query: 64  KEATSEGXXXXXXXP--LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK 121
           KE++ EG          L + +  F+  LG G  G V L ++K      G  +A KV+ K
Sbjct: 3   KESSKEGNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKE----TGDLYAVKVLKK 58
Query: 122 RELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ 180
             ++  +       E+ IL +  +HPFL  L+     P     + EF  GGDL  +   Q
Sbjct: 59  DVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQ 116
Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
             +RF E+  RFYA+E++ AL FLH  GIIYRDLK +NVL+  +GH  L DF +  +G  
Sbjct: 117 KSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEG-- 174
Query: 241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN 300
                                               I N +  A  C             
Sbjct: 175 ------------------------------------ICNGVTTATFC------------- 185
Query: 301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
            GTP+ +A                  PEI+    +G AVDWW +G+ ++E+  G  PF+ 
Sbjct: 186 -GTPDYIA------------------PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEA 226
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGATAIKRHQFF 418
            + +     ++   + +P    +   A  ++   + K+PT R+GS  + G  AI RH FF
Sbjct: 227 ENEDDLFEAILNDEVVYPT--WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFF 284
Query: 419 NGVNWALL--RCAKPPFIPRPVTCRDLTT 445
             ++WA L  R  +PPF PR  +  D++ 
Sbjct: 285 KEIDWAQLNHRQIEPPFRPRIKSREDVSN 313

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 171/380 (45%), Gaps = 86/380 (22%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V++K    N    +A K+++K E++ R + +  R ER++L  
Sbjct: 75  DFEIIKVIGRGAFGEVAVVKMK----NTERIYAMKILNKWEMLKRAETACFREERDVLVN 130
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++  L+          L+ ++  GGDL  L  +  DK   E   RFY  E+V+A++
Sbjct: 131 GDCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAID 189
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
            +H +  ++RD+KP+NVL+  +GHI L D                               
Sbjct: 190 SIHQLHYVHRDIKPDNVLLDVNGHIRLAD------------------------------- 218
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FG              SCL        K+ + GT         V+S   VGT 
Sbjct: 219 -------FG--------------SCL--------KMNDDGT---------VQSSVAVGTP 240
Query: 323 EYLAPEIIS----GEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARAL 375
           +Y++PEI+     G G +G   DWW+LG+ ++E+ YG TPF       T   ++      
Sbjct: 241 DYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERF 300
Query: 376 EFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFI 434
           +FP   + V   AKDLI Q L+    RR+G   G    K+H FF G+NW  +R  + P+I
Sbjct: 301 QFPSHVTDVSEEAKDLI-QRLICSRERRLGQN-GIEDFKKHAFFEGLNWENIRNLEAPYI 358
Query: 435 PRPVTCRDLTTTNSSIDNSI 454
           P   +  D  T+N  +D+ +
Sbjct: 359 PDVSSPSD--TSNFDVDDDV 376

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score =  135 bits (339), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 164/391 (41%), Gaps = 94/391 (24%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIE 136
           PL L D   +  +G G    V LV+LK         +A KV+ K+ELV+ +++    + E
Sbjct: 5   PLGLQDFDLLRVIGRGSYAKVLLVRLKKTDR----IYAMKVV-KKELVNDDEDIDWVQTE 59
Query: 137 REILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           + + E   +HPFL  L++          + E+  GGDL    QRQ  ++  E   RFY++
Sbjct: 60  KHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSA 117
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
           E+ +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +  +G                 
Sbjct: 118 EISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG----------------- 160
Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS 315
              +P D         +  C  PN I P +                              
Sbjct: 161 --LRPGDTT-------SXFCGTPNYIAPEI------------------------------ 181
Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---------HELT 366
                         + GE +G +VDWW LG+ +FE+  G +PF  +           +  
Sbjct: 182 --------------LRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 227
Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGATAIKRHQFFNGVNWA 424
              ++ + +  P+  SV   A  ++   L KDP  R+G   + G   I+ H FF  V+W 
Sbjct: 228 FQVILEKQIRIPRSLSV--KAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWD 285
Query: 425 LLRCAK--PPFIPRPVTCRDLTTTNSSIDNS 453
           ++   +  PPF P       L   +S   N 
Sbjct: 286 MMEQKQVVPPFKPNISGEFGLDNFDSQFTNE 316

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score =  134 bits (338), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 163/387 (42%), Gaps = 94/387 (24%)
Query: 64  KEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
           KEA +          L L D   +  +G G    V LV+LK         +A KV+ K+E
Sbjct: 2   KEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDR----IYAMKVV-KKE 56
Query: 124 LVSRNKE-SRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP 181
           LV+ +++    + E+ + E   +HPFL  L++          + E+  GGDL    QRQ 
Sbjct: 57  LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ- 115
Query: 182 DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            ++  E   RFY++E+ +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +  +G   
Sbjct: 116 -RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG--- 171
Query: 242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP 301
                            +P D         +  C  PN I P +                
Sbjct: 172 ----------------LRPGDTT-------SXFCGTPNYIAPEI---------------- 192
Query: 302 GTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI 361
                                       + GE +G +VDWW LG+ +FE+  G +PF  +
Sbjct: 193 ----------------------------LRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 224
Query: 362 D---------HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGAT 410
                      +     ++ + +  P+  SV   A  ++   L KDP  R+G   + G  
Sbjct: 225 GSSDNPDQNTEDYLFQVILEKQIRIPRSMSV--KAASVLKSFLNKDPKERLGCLPQTGFA 282
Query: 411 AIKRHQFFNGVNWALLRCAK--PPFIP 435
            I+ H FF  V+W ++   +  PPF P
Sbjct: 283 DIQGHPFFRNVDWDMMEQKQVVPPFKP 309

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 164/387 (42%), Gaps = 94/387 (24%)
Query: 64  KEATSEGXXXXXXXPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
           KEA +          L L D   +  +G G    V LV+LK         +A +V+ K+E
Sbjct: 34  KEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDR----IYAMRVV-KKE 88
Query: 124 LVSRNKE-SRARIEREILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQP 181
           LV+ +++    + E+ + E   +HPFL  L++          + E+  GGDL    QRQ 
Sbjct: 89  LVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ- 147
Query: 182 DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
            ++  E   RFY++E+ +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +  +G   
Sbjct: 148 -RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG--- 203
Query: 242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP 301
                            +P D         ++ C  PN I P +                
Sbjct: 204 ----------------LRPGDTT-------STFCGTPNYIAPEI---------------- 224
Query: 302 GTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI 361
                                       + GE +G +VDWW LG+ +FE+  G +PF  +
Sbjct: 225 ----------------------------LRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 256
Query: 362 D---------HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGAT 410
                      +     ++ + +  P+  SV   A  ++   L KDP  R+G   + G  
Sbjct: 257 GSSDNPDQNTEDYLFQVILEKQIRIPRSLSV--KAASVLKSFLNKDPKERLGCHPQTGFA 314
Query: 411 AIKRHQFFNGVNWALLRCAK--PPFIP 435
            I+ H FF  V+W ++   +  PPF P
Sbjct: 315 DIQGHPFFRNVDWDMMEQKQVVPPFKP 341

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 159/372 (42%), Gaps = 94/372 (25%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIER 137
           L L D   +  +G G    V LV+LK         +A KV+ K+ELV+ +++    + E+
Sbjct: 2   LGLQDFDLLRVIGRGSYAKVLLVRLKKTDR----IYAMKVV-KKELVNDDEDIDWVQTEK 56
Query: 138 EILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
            + E   +HPFL  L++          + E+  GGDL    QRQ  ++  E   RFY++E
Sbjct: 57  HVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAE 114
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTG 256
           + +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +  +G                  
Sbjct: 115 ISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG------------------ 156
Query: 257 DQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM 316
             +P D         +  C  PN I P +                               
Sbjct: 157 -LRPGDTT-------SXFCGTPNYIAPEI------------------------------- 177
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---------HELTL 367
                        + GE +G +VDWW LG+ +FE+  G +PF  +           +   
Sbjct: 178 -------------LRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF 224
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGATAIKRHQFFNGVNWAL 425
             ++ + +  P+  SV   A  ++   L KDP  R+G   + G   I+ H FF  V+W +
Sbjct: 225 QVILEKQIRIPRSLSV--KAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDM 282
Query: 426 LRCAK--PPFIP 435
           +   +  PPF P
Sbjct: 283 MEQKQVVPPFKP 294

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           +L D + +  LG+G  G V+L+    +S +NG ++A KV+ K  +V   +      ER +
Sbjct: 4   SLQDFQILRTLGTGSFGRVHLI----RSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLM 59
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L ++ HPF+  ++ T    +   ++ ++  GG+L  L ++   +RF     +FYA+EV +
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCL 117
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ-SPPTGDQ 258
           ALE+LH   IIYRDLKPEN+L+  +GHI +TDF  +    + T       D  +P     
Sbjct: 118 ALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPEVVST 177
Query: 259 QPNDCAVDQPPFG 271
           +P + ++D   FG
Sbjct: 178 KPYNKSIDWWSFG 190

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT +Y+APE++S + +  ++DWW+ GI I+E+  G TPF   +   T   ++   L FP 
Sbjct: 165 GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFP- 223
Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAKPPFIP 435
            P      KDL+++L+ +D ++R+G+ + G   +K H +F  V W  L  R  + P+ P
Sbjct: 224 -PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEP 281

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 11/190 (5%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL- 140
           SD  F+  +G G  G V L + K++      F+A KV+ K+ ++ + +E     ER +L 
Sbjct: 38  SDFHFLKVIGKGSFGKVLLARHKAEE----VFYAVKVLQKKAILKKKEEKHIMSERNVLL 93
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + + HPFL  L+ +         + ++  GG+L    QR+  + F E   RFYA+E+  A
Sbjct: 94  KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASA 151
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTSTAQLVSDQ-SPPTG 256
           L +LH + I+YRDLKPEN+L+ S GHI+LTDF L   +++ +++TST     +  +P   
Sbjct: 152 LGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVL 211
Query: 257 DQQPNDCAVD 266
            +QP D  VD
Sbjct: 212 HKQPYDRTVD 221

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++  + +   VDWW LG  ++E+ YG  PF   +      N++ + L+
Sbjct: 198 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQ 257
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK--PPFI 434
              +P++   A+ L+  LL KD T+R+G+K     IK H FF+ +NW  L   K  PPF 
Sbjct: 258 L--KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFN 315
Query: 435 PRPVTCRDL 443
           P      DL
Sbjct: 316 PNVSGPNDL 324

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S    +  LG G  G V+LV+ K   S+    +A KV+ K  L  R++  R ++ER+IL 
Sbjct: 24  SQFELLKVLGQGSFGKVFLVK-KISGSDARQLYAMKVLKKATLKVRDR-VRTKMERDILV 81
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            ++HPF+  L+          L+ +F  GGDL    +   +  F E  V+FY +E+ +AL
Sbjct: 82  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 139
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ----LVSDQSPPTGD 257
           + LH +GIIYRDLKPEN+L+  +GHI LTDF LS +  +    A      V   +P   +
Sbjct: 140 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN 199
Query: 258 QQPNDCAVDQPPFG 271
           ++ +  + D   FG
Sbjct: 200 RRGHTQSADWWSFG 213

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S    +  LG G  G V+LV+ K   S+    +A KV+ K  L  R++  R ++ER+IL 
Sbjct: 24  SQFELLKVLGQGSFGKVFLVK-KISGSDARQLYAMKVLKKATLKVRDR-VRTKMERDILV 81
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            ++HPF+  L+          L+ +F  GGDL    +   +  F E  V+FY +E+ +AL
Sbjct: 82  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 139
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ----LVSDQSPPTGD 257
           + LH +GIIYRDLKPEN+L+  +GHI LTDF LS +  +    A      V   +P   +
Sbjct: 140 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN 199
Query: 258 QQPNDCAVDQPPFG 271
           ++ +  + D   FG
Sbjct: 200 RRGHTQSADWWSFG 213

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S    +  LG G  G V+LV+ K   S+    +A KV+ K  L  R++  R ++ER+IL 
Sbjct: 25  SQFELLKVLGQGSFGKVFLVK-KISGSDARQLYAMKVLKKATLKVRDR-VRTKMERDILV 82
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            ++HPF+  L+          L+ +F  GGDL    +   +  F E  V+FY +E+ +AL
Sbjct: 83  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 140
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ----LVSDQSPPTGD 257
           + LH +GIIYRDLKPEN+L+  +GHI LTDF LS +  +    A      V   +P   +
Sbjct: 141 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVN 200
Query: 258 QQPNDCAVDQPPFG 271
           ++ +  + D   FG
Sbjct: 201 RRGHTQSADWWSFG 214

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 8/194 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S    +  LG G  G V+LV+ K    ++G  +A KV+ K  L  R++  R ++ER+IL 
Sbjct: 28  SHFELLKVLGQGSFGKVFLVR-KVTRPDSGHLYAMKVLKKATLKVRDR-VRTKMERDILA 85
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            ++HPF+  L+          L+ +F  GGDL    +   +  F E  V+FY +E+ + L
Sbjct: 86  DVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALGL 143
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ----LVSDQSPPTGD 257
           + LH +GIIYRDLKPEN+L+  +GHI LTDF LS +  +    A      V   +P   +
Sbjct: 144 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN 203
Query: 258 QQPNDCAVDQPPFG 271
           +Q +  + D   +G
Sbjct: 204 RQGHSHSADWWSYG 217

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREI 139
           + +   +  LG+G  G V+LV+ K    + G  +A KV+ K  +V + K +   R ER++
Sbjct: 53  IENFELLKVLGTGAYGKVFLVR-KISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQV 111
Query: 140 LEMLDH-PFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEV 197
           LE +   PFL TL+          L+ ++  GG+L   L QR+   RF E  V+ Y  E+
Sbjct: 112 LEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEI 168
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           V+ALE LH +GIIYRD+K EN+L+ S+GH++LTDF LS
Sbjct: 169 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 303 TPEIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           + E VA+  + R+  F GT EY+AP+I+ G   GH  AVDWW+LG+ ++EL  G +PF  
Sbjct: 206 SKEFVADETE-RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV 264
Query: 361 IDHELTLANVVARALE----FPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRH 415
              + + A +  R L+    +P+E S    AKDLI +LL+KDP +R+G     A  IK H
Sbjct: 265 DGEKNSQAEISRRILKSEPPYPQEMS--ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322
Query: 416 QFFNGVNWALLRCAKPPFIPRPVTCRDLTTTN 447
            FF  +NW  L   K P   +PV   +L  +N
Sbjct: 323 LFFQKINWDDLAAKKVPAPFKPVIRDELDVSN 354

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 5   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 60
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 61  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 116
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 117 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 166

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 167 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 226
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF
Sbjct: 227 FPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF 284
Query: 434 IPR 436
            P+
Sbjct: 285 KPQ 287

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 113
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 223
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF
Sbjct: 224 FPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF 281
Query: 434 IPR 436
            P+
Sbjct: 282 KPQ 284

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 113
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPFI 434
           P+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF 
Sbjct: 225 PR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK 282
Query: 435 PR 436
           P+
Sbjct: 283 PQ 284

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 113
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIR 223
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPF 433
           FP+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF
Sbjct: 224 FPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF 281
Query: 434 IPR 436
            P+
Sbjct: 282 KPQ 284

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 113
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPFI 434
           P+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF 
Sbjct: 225 PR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK 282
Query: 435 PR 436
           P+
Sbjct: 283 PQ 284

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 7   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 62
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 63  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 118
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 119 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 168

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 170 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 229
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPFI 434
           P+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF 
Sbjct: 230 PR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK 287
Query: 435 PR 436
           P+
Sbjct: 288 PQ 289

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 10/170 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV----FTEERARFYGAE 113
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK 163

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRF 224
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLRCAK--PPFI 434
           P+  ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +   K  PPF 
Sbjct: 225 PR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFK 282
Query: 435 PR 436
           P+
Sbjct: 283 PQ 284

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSAXKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKII 247

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L  A ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEGLIFAKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKII 247

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L  A ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEGLIFAKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 30  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 85
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 86  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 143
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + ++   TAQ VS    
Sbjct: 144 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 203
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 204 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 244

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 297 KLGNPGTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT 355
           ++ + GT ++++ E    R+ SFVGT +Y++PE+++ +    + D W LG  I++L  G 
Sbjct: 169 QITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 228
Query: 356 TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIK 413
            PF+  +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K
Sbjct: 229 PPFRAGNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLK 286
Query: 414 RHQFFNGVNWALLRCAKPP 432
            H FF  V W  L    PP
Sbjct: 287 AHPFFESVTWENLHQQTPP 305

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 34  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 89
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 90  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 147
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + ++   TAQ VS +  
Sbjct: 148 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 207
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 208 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 248

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+ SFVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 178 GTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 237
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 238 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 295
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 296 ESVTWENLHQQTPP 309

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 30  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 85
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 86  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 143
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 144 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 203
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 204 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 244

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 297 KLGNPGTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT 355
           ++ + GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G 
Sbjct: 169 QITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 228
Query: 356 TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIK 413
            PF+  +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K
Sbjct: 229 PPFRAGNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLK 286
Query: 414 RHQFFNGVNWALLRCAKPP 432
            H FF  V W  L    PP
Sbjct: 287 AHPFFESVTWENLHQQTPP 305

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 86
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 87  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 144
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 204
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 205 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 245

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 175 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 234
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 235 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 292
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 293 ESVTWENLHQQTPP 306

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 247

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 36  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 91
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 92  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 149
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS +  
Sbjct: 150 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 209
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 210 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 250

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 180 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 239
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP   +    A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 240 GNEYLIFQKIIKLEYDFP--AAFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 297
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 298 ESVTWENLHQQTPP 311

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 247

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 34  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 89
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 90  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 147
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS +  
Sbjct: 148 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 207
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 208 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 248

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 178 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 237
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 238 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 295
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 296 ESVTWENLHQQTPP 309

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 15  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 70
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 71  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 128
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 129 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 188
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 189 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 229

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 297 KLGNPGTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT 355
           ++ + GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G 
Sbjct: 154 QITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 213
Query: 356 TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIK 413
            PF+  +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K
Sbjct: 214 PPFRAGNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLK 271
Query: 414 RHQFFNGVNWALLRCAKPP 432
            H FF  V W  L    PP
Sbjct: 272 AHPFFESVTWENLHQQTPP 290

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 86
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 87  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 144
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 204
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 205 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 245

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 175 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 234
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 235 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 292
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 293 ESVTWENLHQQTPP 306

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 86
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 87  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 144
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELL 204
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 205 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 245

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+ +FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 175 GTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 234
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 235 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 292
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 293 ESVTWENLHQQTPP 306

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS +  
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 206
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 247

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 8   DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 63
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 64  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 121
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 122 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 181
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 182 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 222

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 152 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 211
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 212 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 269
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 270 ESVTWENLHQQTPP 283

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++ 
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMS 63
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V AL
Sbjct: 64  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSAL 121
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS--- 249
           E+LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS   
Sbjct: 122 EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 181
Query: 250 ---DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
                +  + D     C + Q     PPF  GN   I    I
Sbjct: 182 LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 223

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 153 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 212
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 213 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 270
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 271 ESVTWENLHQQTPP 284

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++ 
Sbjct: 10  EDFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMS 65
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V AL
Sbjct: 66  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSAL 123
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ- 251
           E+LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS + 
Sbjct: 124 EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 183
Query: 252 -----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
                +  + D     C + Q     PPF  GN   I    I
Sbjct: 184 LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 225

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 155 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 214
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 215 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 272
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 273 ESVTWENLHQQTPP 286

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++ 
Sbjct: 9   EDFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMS 64
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V AL
Sbjct: 65  RLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSAL 122
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ- 251
           E+LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS + 
Sbjct: 123 EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPEL 182
Query: 252 -----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
                +  + D     C + Q     PPF  GN   I    I
Sbjct: 183 LTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 224

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 154 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 213
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 214 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 271
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 272 ESVTWENLHQQTPP 285

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T+++  ++  LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  
Sbjct: 145 VTMNEFEYLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENR 200
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 201 VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAE 256
Query: 197 VVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V AL++LH    ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 257 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 307

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 308 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIR 367
Query: 377 FPKEPSVPGP-AKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PP 432
           FP+     GP AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PP
Sbjct: 368 FPR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPP 424
Query: 433 FIPRPVTCRD 442
           F P+  +  D
Sbjct: 425 FKPQVTSETD 434

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T+++  ++  LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  
Sbjct: 148 VTMNEFEYLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENR 203
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 204 VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAE 259
Query: 197 VVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V AL++LH    ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 260 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 310

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + 
Sbjct: 311 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIR 370
Query: 377 FPKEPSVPGP-AKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PP 432
           FP+     GP AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PP
Sbjct: 371 FPR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPP 427
Query: 433 FIPRPVTCRD 442
           F P+  +  D
Sbjct: 428 FKPQVTSETD 437

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 103/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 88
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G L  L+  +    F E+  RFY +E+V ALE
Sbjct: 89  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGCL--LKYIRKIGSFDETCTRFYTAEIVSALE 146
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + ++   TAQ VS +  
Sbjct: 147 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 206
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 207 TEKSASKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 247

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+ SFVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 177 GTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRA 236
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 237 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 295 ESVTWENLHQQTPP 308

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T+++  ++  LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  
Sbjct: 6   VTMNEFEYLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENR 61
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 62  VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAE 117
Query: 197 VVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V AL++LH    ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 118 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 168

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 170 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 229
Query: 378 PKEPSVPGP-AKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PPF 433
           P+     GP AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PPF
Sbjct: 230 PR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPF 286
Query: 434 IPRPVTCRD 442
            P+  +  D
Sbjct: 287 KPQVTSETD 295

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T+++  ++  LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  
Sbjct: 7   VTMNEFEYLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENR 62
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 63  VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAE 118
Query: 197 VVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V AL++LH    ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 119 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 169

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 171 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 230
Query: 378 PKEPSVPGP-AKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PPF 433
           P+     GP AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PPF
Sbjct: 231 PR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPF 287
Query: 434 IPRPVTCRD 442
            P+  +  D
Sbjct: 288 KPQVTSETD 296

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 11/171 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T+++  ++  LG G  G V LV+ K+     G ++A K++ K  +V++++ +    E  
Sbjct: 5   VTMNEFEYLKLLGKGTFGKVILVKEKA----TGRYYAMKILKKEVIVAKDEVAHTLTENR 60
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 61  VLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERV----FSEDRARFYGAE 116
Query: 197 VVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           +V AL++LH    ++YRDLK EN+++  DGHI +TDF L  +G    +T +
Sbjct: 117 IVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK 167

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++   + F
Sbjct: 169 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 228
Query: 378 PKEPSVPGP-AKDLIAQLLVKDPTRRM-GSKMGATAIKRHQFFNGVNWALLRCAK--PPF 433
           P+     GP AK L++ LL KDP +R+ G    A  I +H+FF G+ W  +   K  PPF
Sbjct: 229 PR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPF 285
Query: 434 IPRPVTCRD 442
            P+  +  D
Sbjct: 286 KPQVTSETD 294

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 101/221 (45%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +  L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 31  DFKFGKILGEGSFSTTVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 86
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 87  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 144
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVS---- 249
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS    
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 204
Query: 250 --DQSPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 205 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 245

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 175 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 234
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 235 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 292
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 293 ESVTWENLHQQTPP 306

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  + S      +A K+++KR ++  NK      ER+++  
Sbjct: 38  DFKFGKILGEGSFSTVVLARELATSRE----YAIKILEKRHIIKENKVPYVTRERDVMSR 93
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY              +   G+L  L+  +    F E+  RFY +E+V ALE
Sbjct: 94  LDHPFFVKLYFCFQDDEKLYFGLSYAKNGEL--LKYIRKIGSFDETCTRFYTAEIVSALE 151
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---------LKGDNSTSTAQLVSDQ-- 251
           +LH  GII+RDLKPEN+L+  D HI +TDF  +          + +    TAQ VS +  
Sbjct: 152 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELL 211
Query: 252 ----SPPTGDQQPNDCAVDQ-----PPF--GNSSCIIPNCI 281
               +  + D     C + Q     PPF  GN   I    I
Sbjct: 212 TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII 252

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 302 GTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
           GT ++++ E    R+  FVGT +Y++PE+++ +    + D W LG  I++L  G  PF+ 
Sbjct: 182 GTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA 241
Query: 361 IDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFF 418
            +  L    ++    +FP E   P  A+DL+ +LLV D T+R+G +   G   +K H FF
Sbjct: 242 GNEYLIFQKIIKLEYDFP-EKFFP-KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 299
Query: 419 NGVNWALLRCAKPP 432
             V W  L    PP
Sbjct: 300 ESVTWENLHQQTPP 313

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES-RARIEREILEMLDHPFL 148
           LG G  G V+ V+ K   +N G  FA KV+ K  +V   K++   + ER ILE + HPF+
Sbjct: 25  LGKGGYGKVFQVR-KVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L           L+ E+  GG+L +  Q + +  F E    FY +E+ +AL  LH  G
Sbjct: 84  VDLIYAFQTGGKLYLILEYLSGGELFM--QLEREGIFMEDTACFYLAEISMALGHLHQKG 141
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL 234
           IIYRDLKPEN+++   GH+ LTDF L
Sbjct: 142 IIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +F GT EY+APEI+   GH  AVDWW+LG  ++++  G  PF G + + T+  ++   L 
Sbjct: 180 TFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLN 239
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMG-ATAIKRHQFFNGVNWA--LLRCAKPPF 433
            P  P +   A+DL+ +LL ++   R+G+  G A  ++ H FF  +NW   L R  +PPF
Sbjct: 240 LP--PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPF 297
Query: 434 IPRPVTCRDLTTTNSSI 450
            P   +  D++  +S  
Sbjct: 298 KPLLQSEEDVSQFDSKF 314

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES-RARIEREILEMLDHPFL 148
           LG G  G V+ V+ K   +N G  FA KV+ K  +V   K++   + ER ILE + HPF+
Sbjct: 25  LGKGGYGKVFQVR-KVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L           L+ E+  GG+L +  Q + +  F E    FY +E+ +AL  LH  G
Sbjct: 84  VDLIYAFQTGGKLYLILEYLSGGELFM--QLEREGIFMEDTACFYLAEISMALGHLHQKG 141
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDL 234
           IIYRDLKPEN+++   GH+ LTDF L
Sbjct: 142 IIYRDLKPENIMLNHQGHVKLTDFGL 167

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT EY+APEI+   GH  AVDWW+LG  ++++  G  PF G + + T+  ++   L  
Sbjct: 181 FCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNL 240
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMG-ATAIKRHQFFNGVNWA--LLRCAKPPFI 434
           P  P +   A+DL+ +LL ++   R+G+  G A  ++ H FF  +NW   L R  +PPF 
Sbjct: 241 P--PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFK 298
Query: 435 PRPVTCRDLTTTNSSI 450
           P   +  D++  +S  
Sbjct: 299 PLLQSEEDVSQFDSKF 314

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  FA K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  FA K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  FA K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            E+LH + +IYRDLKPEN+L+   G+I +TDF  + +    T T
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT 198

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+ +  GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 61  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 116
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 117 QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 174
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 175 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 209

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 269 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 326
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 327 YQRKVEAPFIPK 338

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 26  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 81
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 82  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 139
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            E+LH + +IYRDLKPEN+L+   G+I +TDF  + +    T T
Sbjct: 140 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT 183

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+ +  GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 174 AKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 233
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 234 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 291
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 292 YQRKVEAPFIPK 303

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   I  H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIXNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF L+
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGLA 188

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
           +A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF        
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWAL 425
              +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  
Sbjct: 247 YEKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304
Query: 426 L--RCAKPPFIPR 436
           +  R  + PFIP+
Sbjct: 305 IYQRKVEAPFIPK 317

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 33  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 88
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 89  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 146
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 147 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 181

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 241 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 298
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 299 YQRKVEAPFIPK 310

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF L+
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLA 188

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
           +A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF        
Sbjct: 187 LAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246
Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWAL 425
              +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  
Sbjct: 247 YEKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304
Query: 426 L--RCAKPPFIPR 436
           +  R  + PFIP+
Sbjct: 305 IYQRKVEAPFIPK 317

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 33  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 88
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 89  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 146
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 147 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 181

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 181 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 240
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 241 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 298
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 299 YQRKVEAPFIPK 310

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGFA 188

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 67  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 122
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 123 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 180
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           + +IYRDLKPEN+L+   G+I +TDF  + +   +T T
Sbjct: 181 LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGATWT 218

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           + +  GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF           +V+  
Sbjct: 216 TWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK 275
Query: 375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAKP 431
           + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +  R  + 
Sbjct: 276 VRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEA 333
Query: 432 PFIPR 436
           PFIP+
Sbjct: 334 PFIPK 338

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 41  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 189

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 188

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFXEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFA 188

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L + D      LG G  G V+L + K  +     FFA K + K  ++  +      +E+ 
Sbjct: 15  LKIEDFELHKMLGKGSFGKVFLAEFKKTNQ----FFAIKALKKDVVLMDDDVECTMVEKR 70
Query: 139 ILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +L +  +HPFL  ++ T         + E+  GGDL  +   Q   +F  S   FYA+E+
Sbjct: 71  VLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFDLSRATFYAAEI 128
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTSTAQLVSDQ-SP 253
           ++ L+FLH  GI+YRDLK +N+L+  DGHI + DF +   ++ GD  T+      D  +P
Sbjct: 129 ILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAP 188
Query: 254 PTGDQQPNDCAVDQPPFG 271
                Q  + +VD   FG
Sbjct: 189 EILLGQKYNHSVDWWSFG 206

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++  F GT +Y+APEI+ G+ + ++VDWW+ G+ ++E+  G +PF G D E    ++ 
Sbjct: 173 DAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 232
Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P+   +   AKDL+ +L V++P +R+G +     I++H  F  +NW  L  +  
Sbjct: 233 MDNPFYPR--WLEKEAKDLLVKLFVREPEKRLGVR---GDIRQHPLFREINWEELERKEI 287
Query: 430 KPPFIPR---PVTCRDL 443
            PPF P+   P  C + 
Sbjct: 288 DPPFRPKVKSPFDCSNF 304

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  +G+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTIGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGGD+    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I + DF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  +G+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTIGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGGD+    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I + DF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT E LAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAP II  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+   G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLPNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+  G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKAFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 67  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 122
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 123 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHS 180
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 181 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 209

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 209 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 268
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 269 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 326
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 327 YQRKVEAPFIPK 338

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+++  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF   +     
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 47  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 102
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 103 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 160
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 161 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 189

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFAEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L + D      LG G  G V+L + K  +     FFA K + K  ++  +      +E+ 
Sbjct: 14  LKIEDFILHKMLGKGSFGKVFLAEFKKTNQ----FFAIKALKKDVVLMDDDVECTMVEKR 69
Query: 139 ILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +L +  +HPFL  ++ T         + E+  GGDL  +   Q   +F  S   FYA+E+
Sbjct: 70  VLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDL--MYHIQSCHKFDLSRATFYAAEI 127
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL---SLKGDNSTSTAQLVSDQ-SP 253
           ++ L+FLH  GI+YRDLK +N+L+  DGHI + DF +   ++ GD  T+      D  +P
Sbjct: 128 ILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAP 187
Query: 254 PTGDQQPNDCAVDQPPFG 271
                Q  + +VD   FG
Sbjct: 188 EILLGQKYNHSVDWWSFG 205

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++  F GT +Y+APEI+ G+ + ++VDWW+ G+ ++E+  G +PF G D E    ++ 
Sbjct: 172 DAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 231
Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P+   +   AKDL+ +L V++P +R+G +     I++H  F  +NW  L  +  
Sbjct: 232 MDNPFYPR--WLEKEAKDLLVKLFVREPEKRLGVR---GDIRQHPLFREINWEELERKEI 286
Query: 430 KPPFIPR---PVTCRDL 443
            PPF P+   P  C + 
Sbjct: 287 DPPFRPKVKSPFDCSNF 303

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 41  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 96
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 97  FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHS 154
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 155 LDLIYRDLKPENLLIDQQGYIQVTDFGFA 183

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 183 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 242
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 243 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 300
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 301 YQRKVEAPFIPK 312

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 33  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 88
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 89  FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 146
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 147 LDLIYRDLKPENLLIDEQGYIQVTDFGFA 175

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 175 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 234
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 235 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 292
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 293 YQRKVEAPFIPK 304

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTLGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I +TDF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           +  LG+G  G V LV    K   +G  +A K++DK+++V   +      E+ IL+ ++ P
Sbjct: 46  IKTLGTGSFGRVMLV----KHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           FL  L  +        ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH 
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHS 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +IYRDLKPEN+++   G+I +TDF  +
Sbjct: 160 LDLIYRDLKPENLIIDQQGYIQVTDFGFA 188

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  +G+G  G V LV    K    G  +A K++DK+++V   +      E+ IL
Sbjct: 40  LDQFERIKTIGTGSFGRVMLV----KHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 96  QAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 153
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I + DF  +
Sbjct: 154 FEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFA 188

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 188 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 247
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 248 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 305
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 306 YQRKVEAPFIPK 317

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L     +  LG+G  G V LV    K    G  +A K++DK+++V   +      E+ I 
Sbjct: 41  LDQFERIRTLGTGSFGRVMLV----KHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQ 96
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + ++ PFL  L  +        ++ E+ PGG++    +R    RF E   RFYA+++V+ 
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIG--RFSEPHARFYAAQIVLT 154
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            E+LH + +IYRDLKPEN+L+   G+I + DF  +
Sbjct: 155 FEYLHSLDLIYRDLKPENLLIDQQGYIKVADFGFA 189

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 5/132 (3%)
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           A+ +  R+    GT EYLAPEII  +G+  AVDWW LG+ I+E+  G  PF         
Sbjct: 189 AKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIY 248
Query: 368 ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL 426
             +V+  + FP   S     KDL+  LL  D T+R G+ K G   IK H++F   +W  +
Sbjct: 249 EKIVSGKVRFPSHFS--SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI 306
Query: 427 --RCAKPPFIPR 436
             R  + PFIP+
Sbjct: 307 YQRKVEAPFIPK 318

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 131/323 (40%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V+ V  K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSG----VFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFL-KQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFL-KQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +   D   V  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+
Sbjct: 71  MKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIKRSDSAFFWEERD 126
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   + P++  L+      R+  ++ E+ PGGDL  L     +    E   RFY +EVV
Sbjct: 127 IMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAEVV 183
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           +AL+ +H MG I+RD+KP+N+L+   GH+ L DF   +K
Sbjct: 184 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 222

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + +   VR  + VGT +Y++PE++  +G    +G   DWW++G+F++E+ 
Sbjct: 213 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 272
Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP +  +   AK+LI   L  D   R+G + G  
Sbjct: 273 VGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVE 330
Query: 411 AIKRHQFFNGVNWAL--LRCAKPPFIPRPVTCRDLTTTN 447
            IKRH FF    WA   LR    P +P      D+ T+N
Sbjct: 331 EIKRHLFFKNDQWAWETLRDTVAPVVPD--LSSDIDTSN 367

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +   D   V  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+
Sbjct: 66  MKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIKRSDSAFFWEERD 121
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   + P++  L+      R+  ++ E+ PGGDL  L     +    E   RFY +EVV
Sbjct: 122 IMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAEVV 178
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           +AL+ +H MG I+RD+KP+N+L+   GH+ L DF   +K
Sbjct: 179 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 217

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + +   VR  + VGT +Y++PE++  +G    +G   DWW++G+F++E+ 
Sbjct: 208 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 267
Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP +  +   AK+LI   L  D   R+G + G  
Sbjct: 268 VGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVE 325
Query: 411 AIKRHQFFNGVNWAL--LRCAKPPFIPRPVTCRDLTTTN 447
            IKRH FF    WA   LR    P +P      D+ T+N
Sbjct: 326 EIKRHLFFKNDQWAWETLRDTVAPVVPD--LSSDIDTSN 362

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +   D   V  +G G  G V LV+ KS        +A K++ K E++ R+  +    ER+
Sbjct: 71  MKAEDYEVVKVIGRGAFGEVQLVRHKSTRK----VYAMKLLSKFEMIKRSDSAFFWEERD 126
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   + P++  L+      R+  ++ E+ PGGDL  L     +    E   RFY +EVV
Sbjct: 127 IMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL---MSNYDVPEKWARFYTAEVV 183
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           +AL+ +H MG I+RD+KP+N+L+   GH+ L DF   +K
Sbjct: 184 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 222

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + +   VR  + VGT +Y++PE++  +G    +G   DWW++G+F++E+ 
Sbjct: 213 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 272
Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP +  +   AK+LI   L  D   R+G + G  
Sbjct: 273 VGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT-DREVRLG-RNGVE 330
Query: 411 AIKRHQFFNGVNWAL--LRCAKPPFIPRPVTCRDLTTTN 447
            IKRH FF    WA   LR    P +P      D+ T+N
Sbjct: 331 EIKRHLFFKNDQWAWETLRDTVAPVVPD--LSSDIDTSN 367

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFL-KQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFL-KQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 18  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 73
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 74  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 131
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 132 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 168
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 169 -------FGNE---FKNIF--------------------GTPEFV--------------- 183
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 184 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 240
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 241 SNTSALAKDFIRRLLVKDPKKRM 263

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 18  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 73
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 74  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 131
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 132 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 168
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 169 -------FGNE---FKNIF--------------------GTPEFV--------------- 183
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 184 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 240
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 241 SNTSALAKDFIRRLLVKDPKKRM 263

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILIGELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + L+D  F+  LG G  G V L   K         +A K++ K  ++  +      +E+ 
Sbjct: 16  VKLTDFNFLMVLGKGSFGKVMLADRKGTEE----LYAIKILKKDVVIQDDDVECTMVEKR 71
Query: 139 ILEMLDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +L +LD P FL  L++          + E+  GGDL  +   Q   +F E    FYA+E+
Sbjct: 72  VLALLDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDL--MYHIQQVGKFKEPQAVFYAAEI 129
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + L FLH  GIIYRDLK +NV++ S+GHI + DF +
Sbjct: 130 SIGLFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGM 166

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V +  F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF G D +    +++ 
Sbjct: 175 VTTREFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIME 234
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCA 429
             + +PK  S+   A  +   L+ K P +R+G    G   ++ H FF  ++W  L  R  
Sbjct: 235 HNVSYPK--SLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREI 292
Query: 430 KPPFIPR 436
           +PPF P+
Sbjct: 293 QPPFKPK 299

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGKFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 129/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEF-LKQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTPE V               
Sbjct: 170 -------FGNE---FKNIF--------------------GTPEFV--------------- 184
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
              APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 185 ---APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +   D   V  +G G  G V LV+ K+        +A K++ K E++ R+  +    ER+
Sbjct: 72  MKAEDYDVVKVIGRGAFGEVQLVRHKASQK----VYAMKLLSKFEMIKRSDSAFFWEERD 127
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   + P++  L+      ++  ++ E+ PGGDL  L     +    E   +FY +EVV
Sbjct: 128 IMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNL---MSNYDVPEKWAKFYTAEVV 184
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           +AL+ +H MG+I+RD+KP+N+L+   GH+ L DF   +K D +
Sbjct: 185 LALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDET 227

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELF 352
           KL + GT   + E   V   + VGT +Y++PE++  +G    +G   DWW++G+F+FE+ 
Sbjct: 214 KLADFGTCMKMDETGMVHCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 273
Query: 353 YGTTPFKGIDHELTLANVV--ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
            G TPF       T + ++    +L FP++  +   AK+LI   L  D   R+G + G  
Sbjct: 274 VGDTPFYADSLVGTYSKIMDHKNSLCFPEDAEISKHAKNLICAFLT-DREVRLG-RNGVE 331
Query: 411 AIKRHQFF--NGVNWALLRCAKPPFIPRPVTCRDLTTTN 447
            IK+H FF  +  NW  +R    P +P      D+ ++N
Sbjct: 332 EIKQHPFFKNDQWNWDNIRETAAPVVPE--LSSDIDSSN 368

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 128/323 (39%), Gaps = 86/323 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIERE--ILEMLDHP 146
           LGSG    V     K +  + G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVK----KCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + TL+   +      L+ E   GG+L      + +    E A  F   +++  + +LH 
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFL-KQILNGVYYLHS 132
Query: 207 MGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + I + DLKPEN+++         I + DF L+ K D                       
Sbjct: 133 LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID----------------------- 169
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FGN      N                      GTP  VA              
Sbjct: 170 -------FGNE---FKNIF--------------------GTPAFVA-------------- 185
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-- 380
               PEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF  E  
Sbjct: 186 ----PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241
Query: 381 PSVPGPAKDLIAQLLVKDPTRRM 403
            +    AKD I +LLVKDP +RM
Sbjct: 242 SNTSALAKDFIRRLLVKDPKKRM 264

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G G  G V +VQ     ++    +A K M+K++ V RN+      E +I++ L+HPFL 
Sbjct: 23  IGKGSFGKVCIVQ----KNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLV 78
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L+ +        ++ +   GGDL      Q +  F E  V+ +  E+V+AL++L    I
Sbjct: 79  NLWYSFQDEEDMFMVVDLLLGGDLRY--HLQQNVHFKEETVKLFICELVMALDYLQNQRI 136
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           I+RD+KP+N+L+   GH+ +TDF+++
Sbjct: 137 IHRDMKPDNILLDEHGHVHITDFNIA 162

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 310 PLDVRSMSFVGTHEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPF-------- 358
           P + +  +  GT  Y+APE+ S   G G+  AVDWW+LG+  +EL  G  P+        
Sbjct: 166 PRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSS 225
Query: 359 KGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           K I H      VV     + +E         L+ +LL  +P +R       + ++   + 
Sbjct: 226 KEIVHTFE-TTVVTYPSAWSQE------MVSLLKKLLEPNPDQRFSQ---LSDVQNFPYM 275
Query: 419 NGVNW--ALLRCAKPPFIP 435
           N +NW     +   P FIP
Sbjct: 276 NDINWDAVFQKRLIPGFIP 294

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 5/155 (3%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V+LK    N    FA K+++K E++ R + +  R ER++L  
Sbjct: 75  DFEILKVIGRGAFGEVAVVKLK----NADKVFAMKILNKWEMLKRAETACFREERDVLVN 130
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++ TL+          L+ ++  GGDL  L  +  D R  E   RFY +E+V+A++
Sbjct: 131 GDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFED-RLPEEMARFYLAEMVIAID 189
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            +H +  ++RD+KP+N+L+  +GHI L DF   LK
Sbjct: 190 SVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIIS----GEG-HGNAVDWWTLGIFIFEL 351
           +L + G+   + E   V+S   VGT +Y++PEI+     G+G +G   DWW+LG+ ++E+
Sbjct: 215 RLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM 274
Query: 352 FYGTTPFKGIDHELTLANVV--ARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMG 408
            YG TPF       T   ++      +FP + + V   AKDLI +L+      R+G   G
Sbjct: 275 LYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICS-REHRLGQN-G 332
Query: 409 ATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTTNSSIDN 452
               K+H FF+G++W  +R  + P+IP   +  D  T+N  +D+
Sbjct: 333 IEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTD--TSNFDVDD 374

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 79  LTLSDLRFVHRL-GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           LT++D   VHR+ G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER
Sbjct: 185 LTMNDFS-VHRIIGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNER 239
Query: 138 EILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
            +L ++   D PF+  +      P     + +   GGDLH  L Q      F E+ +RFY
Sbjct: 240 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV---FSEADMRFY 296
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 297 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 338

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVAR 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+       HE+    +   
Sbjct: 350 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM- 408
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALLRCAK-- 430
           A+E P   S     + L+  LL +D  RR+G    GA  +K   FF  ++W ++   K  
Sbjct: 409 AVELP--DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYP 466
Query: 431 PPFIP 435
           PP IP
Sbjct: 467 PPLIP 471

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 79  LTLSDLRFVHRL-GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           LT++D   VHR+ G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER
Sbjct: 186 LTMNDFS-VHRIIGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNER 240
Query: 138 EILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
            +L ++   D PF+  +      P     + +   GGDLH  L Q      F E+ +RFY
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV---FSEADMRFY 297
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVAR 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+       HE+    +   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM- 409
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALLRCAK-- 430
           A+E P   S     + L+  LL +D  RR+G    GA  +K   FF  ++W ++   K  
Sbjct: 410 AVELP--DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYP 467
Query: 431 PPFIP 435
           PP IP
Sbjct: 468 PPLIP 472

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 79  LTLSDLRFVHRL-GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           LT++D   VHR+ G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER
Sbjct: 186 LTMNDFS-VHRIIGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNER 240
Query: 138 EILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
            +L ++   D PF+  +      P     + +   GGDLH  L Q      F E+ +RFY
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV---FSEADMRFY 297
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVAR 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+       HE+    +   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM- 409
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALLRCAK-- 430
           A+E P   S     + L+  LL +D  RR+G    GA  +K   FF  ++W ++   K  
Sbjct: 410 AVELP--DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYP 467
Query: 431 PPFIP 435
           PP IP
Sbjct: 468 PPLIP 472

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 79  LTLSDLRFVHRL-GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           LT++D   VHR+ G G  G VY      + ++ G  +A K +DK+ +  +  E+ A  ER
Sbjct: 186 LTMNDFS-VHRIIGRGGFGEVY----GCRKADTGKMYAMKCLDKKRIKMKQGETLALNER 240
Query: 138 EILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
            +L ++   D PF+  +      P     + +   GGDLH  L Q      F E+ +RFY
Sbjct: 241 IMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGV---FSEADMRFY 297
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA 339

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 319 VGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK----GIDHELTLANVVAR 373
           VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+       HE+    +   
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM- 409
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALLRCAK-- 430
           A+E P   S     + L+  LL +D  RR+G    GA  +K   FF  ++W ++   K  
Sbjct: 410 AVELP--DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYP 467
Query: 431 PPFIP 435
           PP IP
Sbjct: 468 PPLIP 472

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L   D   +  +G G    V +V++K      G  +A K+M+K +++ R + S  R ER+
Sbjct: 58  LQRDDFEILKVIGRGAFSEVAVVKMK----QTGQVYAMKIMNKWDMLKRGEVSCFREERD 113
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +L   D  ++  L+       +  L+ E+  GGDL  L  +  ++   E A RFY +E+V
Sbjct: 114 VLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMA-RFYLAEIV 172
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
           +A++ +H +G ++RD+KP+N+L+   GHI L DF   LK     +   LV+  +P
Sbjct: 173 MAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTP 227

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAV-------DWWTLGIFIFELFYGTTPFKGIDHEL 365
           VRS+  VGT +YL+PEI+   G G          DWW LG+F +E+FYG TPF       
Sbjct: 218 VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE 277
Query: 366 TLANVV--ARALEFP-KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN 422
           T   +V     L  P  +  VP  A+D I +LL   P  R+G + GA   + H FF G++
Sbjct: 278 TYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLG-RGGAGDFRTHPFFFGLD 335
Query: 423 WALLRCAKPPFIP 435
           W  LR + PPF P
Sbjct: 336 WDGLRDSVPPFTP 348

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 135/351 (38%), Gaps = 101/351 (28%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK--------- 129
           + L+       +G G  G V L    + + N+  ++A KV+ K++L+ +           
Sbjct: 10  VQLNQYTLKDEIGKGSYGVVKL----AYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRG 65
Query: 130 ---------ESRARIER-----EILEMLDHPFLPTLYATLDCPRWSCL--LTEFCPGGDL 173
                    + R  IE+      IL+ LDHP +  L   LD P    L  + E    G +
Sbjct: 66  TRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPV 125
Query: 174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD 233
             +   +P     E   RFY  +++  +E+LH   II+RD+KP N+LV  DGHI + DF 
Sbjct: 126 MEVPTLKP---LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFG 182
Query: 234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRR 293
           +S                                  F  S  ++ N +            
Sbjct: 183 VS--------------------------------NEFKGSDALLSNTV------------ 198
Query: 294 RKKKLGNPGTPEIVA-EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF 352
                   GTP  +A E L      F G                 A+D W +G+ ++   
Sbjct: 199 --------GTPAFMAPESLSETRKIFSG----------------KALDVWAMGVTLYCFV 234
Query: 353 YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
           +G  PF         + + ++ALEFP +P +    KDLI ++L K+P  R+
Sbjct: 235 FGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRI 285

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   +  +G G  G V +V++K    N    +A K+++K E++ R + +  R ER++L  
Sbjct: 91  DFEIIKVIGRGAFGEVAVVKMK----NTERIYAMKILNKWEMLKRAETACFREERDVLVN 146
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            D  ++  L+          L+ ++  GGDL  L  +  DK   E   RFY  E+V+A++
Sbjct: 147 GDCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAID 205
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
            +H +  ++RD+KP+NVL+  +GHI L DF   LK ++  +    V+  +P
Sbjct: 206 SIHQLHYVHRDIKPDNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAVGTP 256

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 12/150 (8%)
Query: 313 VRSMSFVGTHEYLAPEIIS----GEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
           V+S   VGT +Y++PEI+     G G +G   DWW+LG+ ++E+ YG TPF       T 
Sbjct: 247 VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETY 306
Query: 368 ANVV--ARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA 424
             ++      +FP   + V   AKDLI Q L+    RR+G   G    K+H FF G+NW 
Sbjct: 307 GKIMNHEERFQFPSHVTDVSEEAKDLI-QRLICSRERRLGQN-GIEDFKKHAFFEGLNWE 364
Query: 425 LLRCAKPPFIPRPVTCRDLTTTNSSIDNSI 454
            +R  + P+IP   +  D  T+N  +D+ +
Sbjct: 365 NIRNLEAPYIPDVSSPSD--TSNFDVDDDV 392

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 94/370 (25%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A K++ KR+  +   +E+        E EIL+ L+
Sbjct: 18  LGSGACGEVKLA-FERKTCKK---VAIKIISKRKFAIGSAREADPALNVETEIEILKKLN 73
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 74  HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 130
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 131 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 155
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 156 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 182
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 242
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK-------MGATAIKRHQFFNGVNWALLRCAKP 431
               V   A DL+ +LLV DP  R  ++       +    +KR +F + ++      AKP
Sbjct: 243 VWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR-KFQDLLSEENESTAKP 301
Query: 432 PFIPRPVTCR 441
             + +P T R
Sbjct: 302 QVLAQPSTSR 311

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + L+D  F+  LG G  G V L + K         +A K++ K  ++  +      +E+ 
Sbjct: 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDE----LYAVKILKKDVVIQDDDVECTMVEKR 393
Query: 139 ILEMLDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +L +   P FL  L++          + E+  GGDL  +   Q   RF E    FYA+E+
Sbjct: 394 VLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGRFKEPHAVFYAAEI 451
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + L FL   GIIYRDLK +NV++ S+GHI + DF +
Sbjct: 452 AIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM 488

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V +  F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF+G D +    +++ 
Sbjct: 497 VTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIME 556
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCA 429
             + +PK  S+   A  +   L+ K P +R+G    G   IK H FF  ++W  L  +  
Sbjct: 557 HNVAYPK--SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEI 614
Query: 430 KPPFIPR 436
           +PP+ P+
Sbjct: 615 QPPYKPK 621

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + L+D  F+  LG G  G V L + K         +A K++ K  ++  +      +E+ 
Sbjct: 17  MKLTDFNFLMVLGKGSFGKVMLSERKGTDE----LYAVKILKKDVVIQDDDVECTMVEKR 72
Query: 139 ILEMLDHP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +L +   P FL  L++          + E+  GGDL  +   Q   RF E    FYA+E+
Sbjct: 73  VLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGRFKEPHAVFYAAEI 130
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + L FL   GIIYRDLK +NV++ S+GHI + DF +
Sbjct: 131 AIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM 167

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V +  F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF+G D +    +++ 
Sbjct: 176 VTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIME 235
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCA 429
             + +PK  S+   A  +   L+ K P +R+G    G   IK H FF  ++W  L  +  
Sbjct: 236 HNVAYPK--SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEI 293
Query: 430 KPPFIPR 436
           +PP+ P+
Sbjct: 294 QPPYKPK 300

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A K++ KR+  +   +E+        E EIL+ L+
Sbjct: 18  LGSGACGEVKLA-FERKTCKK---VAIKIISKRKFAIGSAREADPALNVETEIEILKKLN 73
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 74  HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 130
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 131 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 155
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 156 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 182
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 242
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 243 VWAEVSEKALDLVKKLLVVDPKARFTTE 270

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A K++ KR+  +   +E+        E EIL+ L+
Sbjct: 18  LGSGACGEVKLA-FERKTCKK---VAIKIISKRKFAIGSAREADPALNVETEIEILKKLN 73
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 74  HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 130
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 131 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 155
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 156 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 182
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 183 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 242
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 243 VWAEVSEKALDLVKKLLVVDPKARFTTE 270

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A K++ KR+  +   +E+        E EIL+ L+
Sbjct: 17  LGSGACGEVKLA-FERKTCKK---VAIKIISKRKFAIGSAREADPALNVETEIEILKKLN 72
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 73  HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 129
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 130 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 154
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 155 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 181
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 182 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 241
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 242 VWAEVSEKALDLVKKLLVVDPKARFTTE 269

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A K++ KR+  +   +E+        E EIL+ L+
Sbjct: 24  LGSGACGEVKLA-FERKTCKK---VAIKIISKRKFAIGSAREADPALNVETEIEILKKLN 79
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 80  HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 136
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 137 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 161
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 162 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 188
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 189 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 248
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 249 VWAEVSEKALDLVKKLLVVDPKARFTTE 276

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A +++ KR+  +   +E+        E EIL+ L+
Sbjct: 157 LGSGACGEVKLA-FERKTCKK---VAIRIISKRKFAIGSAREADPALNVETEIEILKKLN 212
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 213 HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 269
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 270 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 294
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 295 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 321
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 322 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 381
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 382 VWAEVSEKALDLVKKLLVVDPKARFTTE 409

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKES----RARIEREILEMLD 144
           LGSG  G V L   + K+       A +++ KR+  +   +E+        E EIL+ L+
Sbjct: 143 LGSGACGEVKLA-FERKTCKK---VAIRIISKRKFAIGSAREADPALNVETEIEILKKLN 198
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  +    D   +  +L E   GG+L    +   +KR  E+  + Y  ++++A+++L
Sbjct: 199 HPCIIKIKNFFDAEDYYIVL-ELMEGGEL--FDKVVGNKRLKEATCKLYFYQMLLAVQYL 255
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GII+RDLKPENVL+ S                                   Q  DC 
Sbjct: 256 HENGIIHRDLKPENVLLSS-----------------------------------QEEDCL 280
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
           +    FG+S                               +I+ E   +R++   GT  Y
Sbjct: 281 IKITDFGHS-------------------------------KILGETSLMRTL--CGTPTY 307
Query: 325 LAPEI---ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN-VVARALEFPKE 380
           LAPE+   +   G+  AVD W+LG+ +F    G  PF     +++L + + +    F  E
Sbjct: 308 LAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPE 367
Query: 381 --PSVPGPAKDLIAQLLVKDPTRRMGSK 406
               V   A DL+ +LLV DP  R  ++
Sbjct: 368 VWAEVSEKALDLVKKLLVVDPKARFTTE 395

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 130/319 (40%), Gaps = 84/319 (26%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-EREILEMLDHPFL 148
           LG G  G V    LK K       +A KV++K    ++NK++   + E E+L+ LDHP +
Sbjct: 30  LGKGSFGEV----LKCKDRITQQEYAVKVINKAS--AKNKDTSTILREVELLKKLDHPNI 83
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             L+  L+      ++ E   GG+L   ++++    KRF E        +V   + ++H 
Sbjct: 84  MKLFEILEDSSSFYIVGELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHK 139
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
             I++RDLKPEN+L+ S                                   +  DC + 
Sbjct: 140 HNIVHRDLKPENILLES-----------------------------------KEKDCDIK 164
Query: 267 QPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA 326
              FG S+C   N             + K ++                     GT  Y+A
Sbjct: 165 IIDFGLSTCFQQNT------------KMKDRI---------------------GTAYYIA 191
Query: 327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVP 384
           PE++ G  +    D W+ G+ ++ L  GT PF G +    L  V     A + P+  ++ 
Sbjct: 192 PEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTIS 250
Query: 385 GPAKDLIAQLLVKDPTRRM 403
             AKDLI ++L   P+ R+
Sbjct: 251 DDAKDLIRKMLTFHPSLRI 269

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 8/232 (3%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P+T +  R    LG G  G V   Q+++     G  +A K ++K+ +  R  E+ A  E+
Sbjct: 180 PVTKNTFRQYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEK 235
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +ILE ++  F+ +L    +     CL+     GGDL           F E+   FYA+E+
Sbjct: 236 QILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEI 295
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
              LE LH   I+YRDLKPEN+L+   GHI ++D  L++         Q +  +    G 
Sbjct: 296 CCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV----HVPEGQTIKGRVGTVGY 351
Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE 309
             P     ++  F      +   +   ++   P ++RKKK+       +V E
Sbjct: 352 MAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE 403

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE++  E +  + DWW LG  ++E+  G +PF+    ++    V     E P
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP 405
Query: 379 KEPS--VPGPAKDLIAQLLVKDPTRRMGSKMG-ATAIKRHQFFNGVNWALLRCA--KPPF 433
           +E S      A+ L +QLL KDP  R+G + G A  +K H  F  +N+  L     +PPF
Sbjct: 406 EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPF 465
Query: 434 IPRP--VTCRDL 443
            P P  + C+D+
Sbjct: 466 KPDPQAIYCKDV 477

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 8/232 (3%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P+T +  R    LG G  G V   Q+++     G  +A K ++K+ +  R  E+ A  E+
Sbjct: 180 PVTKNTFRQYRVLGKGGFGEVCACQVRA----TGKMYACKKLEKKRIKKRKGEAMALNEK 235
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           +ILE ++  F+ +L    +     CL+     GGDL           F E+   FYA+E+
Sbjct: 236 QILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEI 295
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
              LE LH   I+YRDLKPEN+L+   GHI ++D  L++         Q +  +    G 
Sbjct: 296 CCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV----HVPEGQTIKGRVGTVGY 351
Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE 309
             P     ++  F      +   +   ++   P ++RKKK+       +V E
Sbjct: 352 MAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE 403

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y+APE++  E +  + DWW LG  ++E+  G +PF+    ++    V     E P
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP 405
Query: 379 KEPS--VPGPAKDLIAQLLVKDPTRRMGSKMG-ATAIKRHQFFNGVNWALLRCA--KPPF 433
           +E S      A+ L +QLL KDP  R+G + G A  +K H  F  +N+  L     +PPF
Sbjct: 406 EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPF 465
Query: 434 IPRP--VTCRDL 443
            P P  + C+D+
Sbjct: 466 KPDPQAIYCKDV 477

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 82/318 (25%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V    LK K       +A KV++K    +++  +  R E E+L+ LDHP + 
Sbjct: 30  LGKGSFGEV----LKCKDRITQQEYAVKVINKASAKNKDTSTILR-EVELLKKLDHPNIM 84
Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
            L+  L+      ++ E   GG+L   ++++    KRF E        +V   + ++H  
Sbjct: 85  KLFEILEDSSSFYIVGELYTGGELFDEIIKR----KRFSEHDAARIIKQVFSGITYMHKH 140
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
            I++RDLKPEN+L+ S                                   +  DC +  
Sbjct: 141 NIVHRDLKPENILLES-----------------------------------KEKDCDIKI 165
Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
             FG S+C   N             + K ++G                     T  Y+AP
Sbjct: 166 IDFGLSTCFQQNT------------KMKDRIG---------------------TAYYIAP 192
Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPG 385
           E++ G  +    D W+ G+ ++ L  GT PF G +    L  V     A + P+  ++  
Sbjct: 193 EVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISD 251
Query: 386 PAKDLIAQLLVKDPTRRM 403
            AKDLI ++L   P+ R+
Sbjct: 252 DAKDLIRKMLTFHPSLRI 269

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 125/316 (39%), Gaps = 78/316 (24%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V    LK K       +A KV++K    +++  +  R E E+L+ LDHP + 
Sbjct: 30  LGKGSFGEV----LKCKDRITQQEYAVKVINKASAKNKDTSTILR-EVELLKKLDHPNIM 84
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L+  L+      ++ E   GG+L    +    KRF E        +V   + ++H   I
Sbjct: 85  KLFEILEDSSSFYIVGELYTGGEL--FDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNI 142
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           ++RDLKPEN+L+ S                                   +  DC +    
Sbjct: 143 VHRDLKPENILLES-----------------------------------KEKDCDIKIID 167
Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
           FG S+C   N             + K ++G                     T  Y+APE+
Sbjct: 168 FGLSTCFQQNT------------KMKDRIG---------------------TAYYIAPEV 194
Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA--RALEFPKEPSVPGPA 387
           + G  +    D W+ G+ ++ L  GT PF G +    L  V     A + P+  ++   A
Sbjct: 195 LRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 388 KDLIAQLLVKDPTRRM 403
           KDLI ++L   P+ R+
Sbjct: 254 KDLIRKMLTFHPSLRI 269

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           TL D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 10  TLEDFDIGRPLGKGKFGNVYL----ARERQSKFILALKVLFKTQLEKAGVEHQLRREVEI 65
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   RF E     Y +E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSRFDEQRTATYITELAN 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S+G + + DF  S+   +S  T 
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRTT 169

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
            T+ D   V  LG G  G+VYL    ++   N    A KV+ K +L     E + R E E
Sbjct: 11  FTIDDFDIVRPLGKGKFGNVYL----AREKQNKFIMALKVLFKSQLEKEGVEHQLRREIE 66
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I   L HP +  +Y      +   L+ EF P G+L+  ++ Q   RF E     +  E+ 
Sbjct: 67  IQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELY--KELQKHGRFDEQRSATFMEELA 124
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL 236
            AL + H   +I+RD+KPEN+L+   G + + DF  S+
Sbjct: 125 DALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSV 162

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           +R     GT +YL PE+I G+ H   VD W  G+  +E   G  PF    H  T   +V 
Sbjct: 167 LRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN 226
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
             L+FP  P +   +KDLI++LL   P +R+
Sbjct: 227 VDLKFP--PFLSDGSKDLISKLLRYHPPQRL 255

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 78/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++  N+    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKNSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDSTRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S   A
Sbjct: 120 ALSYCHSKKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA 165

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             V  LG G  G VY    K+K+   G   AAKV++ +   S  +     +E EIL   D
Sbjct: 14  EIVGELGDGAFGKVY----KAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCD 66
Query: 145 HPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           HP++  L      D   W  ++ EFCPGG +  +   + D+   E  ++    +++ AL 
Sbjct: 67  HPYIVKLLGAYYHDGKLW--IMIEFCPGGAVDAI-MLELDRGLTEPQIQVVCRQMLEALN 123
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           FLH   II+RDLK  NVL+  +G I L DF +S K
Sbjct: 124 FLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAK 158

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           TL D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 10  TLEDFDIGRPLGKGKFGNVYL----ARERQSKFILALKVLFKTQLEKAGVEHQLRREVEI 65
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   RF E     Y +E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSRFDEQRTATYITELAN 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S+G + + DF  S+   +S
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSS 165

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
            V  LG G  G VY    K+K+   G   AAKV++ +   S  +     +E EIL   DH
Sbjct: 23  IVGELGDGAFGKVY----KAKNKETGALAAAKVIETK---SEEELEDYIVEIEILATCDH 75
Query: 146 PFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
           P++  L      D   W  ++ EFCPGG +  +   + D+   E  ++    +++ AL F
Sbjct: 76  PYIVKLLGAYYHDGKLW--IMIEFCPGGAVDAI-MLELDRGLTEPQIQVVCRQMLEALNF 132
Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
           LH   II+RDLK  NVL+  +G I L DF +S K
Sbjct: 133 LHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAK 166

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 87
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 88  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 145
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 146 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 190

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 66
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G+  V ++ Q   +F E     Y +E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPRGE--VYKELQKLSKFDEQRTATYITELAN 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R  +  GT +YL PE+I G  H   VD W+LG+  +E   G  PF+   ++ T   +   
Sbjct: 167 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
              FP    V   A+DLI++LL  +P++R
Sbjct: 227 EFTFPD--FVTEGARDLISRLLKHNPSQR 253

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 66
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 170

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 78
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 79  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 136
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 137 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 182

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 165

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 164

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 66
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 168

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S   A
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA 168

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 62
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 165

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 65
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 66  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 124 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 168

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL + K +        A KV+ K +L     E + R E EI
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRK----FILALKVLFKAQLEKAGVEHQLRREVEI 58
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 59  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 116
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 117 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 162

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 164

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 164

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
            T+ D      LG G  G+VYL    ++   N    A KV+ K +L     E + R E E
Sbjct: 12  FTIDDFDIGRPLGKGKFGNVYL----AREKQNKFIMALKVLFKSQLEKEGVEHQLRREIE 67
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I   L HP +  +Y      +   L+ EF P G+L+  ++ Q   RF E     +  E+ 
Sbjct: 68  IQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELY--KELQKHGRFDEQRSATFMEELA 125
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL 236
            AL + H   +I+RD+KPEN+L+   G + + DF  S+
Sbjct: 126 DALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSV 163

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           +R     GT +YL PE+I G+ H   VD W  G+  +E   G  PF    H  T   +V 
Sbjct: 168 LRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVN 227
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
             L+FP  P +   +KDLI++LL   P +R+
Sbjct: 228 VDLKFP--PFLSDGSKDLISKLLRYHPPQRL 256

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 66
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 169

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT 164

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 60
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 61  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 118
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 119 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 164

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S   A
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA 165

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 87
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 88  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 145
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 146 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 187

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T 
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTT 168

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+  Q+K+     G  +A K ++K+ L  R     A +E++IL  +   F+ 
Sbjct: 193 LGRGGFGEVFACQMKA----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIV 248
Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L    +     CL+     GGD+  H+    + +  F E    FY +++V  LE LH  
Sbjct: 249 SLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR 308
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            IIYRDLKPENVL+  DG++ ++D  L+++
Sbjct: 309 NIIYRDLKPENVLLDDDGNVRISDLGLAVE 338

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLA 368
            ++  + GT  ++APE++ GE +  +VD++ LG+ ++E+     PF+     ++++    
Sbjct: 344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ 403
Query: 369 NVVARALEFPKEPSVPGPA-KDLIAQLLVKDPTRRMGSKMGA-TAIKRHQFFNGVNWALL 426
            V+ +A+ +P + S   PA KD    LL KDP +R+G + G+   ++ H  F  ++W  L
Sbjct: 404 RVLEQAVTYPDKFS---PASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL 460
Query: 427 RCA--KPPFIP--RPVTCRDLTTTNS 448
                 PPF+P  R V  +++    +
Sbjct: 461 EAGMLTPPFVPDSRTVYAKNIQDVGA 486

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+  Q+K+     G  +A K ++K+ L  R     A +E++IL  +   F+ 
Sbjct: 193 LGRGGFGEVFACQMKA----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIV 248
Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L    +     CL+     GGD+  H+    + +  F E    FY +++V  LE LH  
Sbjct: 249 SLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR 308
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            IIYRDLKPENVL+  DG++ ++D  L+++
Sbjct: 309 NIIYRDLKPENVLLDDDGNVRISDLGLAVE 338

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLA 368
            ++  + GT  ++APE++ GE +  +VD++ LG+ ++E+     PF+     ++++    
Sbjct: 344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ 403
Query: 369 NVVARALEFPKEPSVPGPA-KDLIAQLLVKDPTRRMGSKMGA-TAIKRHQFFNGVNWALL 426
            V+ +A+ +P + S   PA KD    LL KDP +R+G + G+   ++ H  F  ++W  L
Sbjct: 404 RVLEQAVTYPDKFS---PASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL 460
Query: 427 RCA--KPPFIP--RPVTCRDLTTTNS 448
                 PPF+P  R V  +++    +
Sbjct: 461 EAGMLTPPFVPDSRTVYAKNIQDVGA 486

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+  Q+K+     G  +A K ++K+ L  R     A +E++IL  +   F+ 
Sbjct: 193 LGRGGFGEVFACQMKA----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIV 248
Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L    +     CL+     GGD+  H+    + +  F E    FY +++V  LE LH  
Sbjct: 249 SLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR 308
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            IIYRDLKPENVL+  DG++ ++D  L+++
Sbjct: 309 NIIYRDLKPENVLLDDDGNVRISDLGLAVE 338

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLA 368
            ++  + GT  ++APE++ GE +  +VD++ LG+ ++E+     PF+     ++++    
Sbjct: 344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ 403
Query: 369 NVVARALEFPKEPSVPGPA-KDLIAQLLVKDPTRRMGSKMGA-TAIKRHQFFNGVNWALL 426
            V+ +A+ +P + S   PA KD    LL KDP +R+G + G+   ++ H  F  ++W  L
Sbjct: 404 RVLEQAVTYPDKFS---PASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL 460
Query: 427 RCA--KPPFIP--RPVTCRDLTTTNS 448
                 PPF+P  R V  +++    +
Sbjct: 461 EAGMLTPPFVPDSRTVYAKNIQDVGA 486

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 122/299 (40%), Gaps = 78/299 (26%)
Query: 110 NGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP 169
            G  +AAK+++ ++L +R+ +   R E  I  +L H  +  L+ ++    +  L+ +   
Sbjct: 28  TGHEYAAKIINTKKLSARDHQKLER-EARICRLLKHSNIVRLHDSISEEGFHYLVFDLVT 86
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GH 226
           GG+L         + + E+       +++ A+   H MG+++RDLKPEN+L+ S      
Sbjct: 87  GGEL--FEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAA 144
Query: 227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVS 286
           + L DF L+++                  GDQ        Q  FG +             
Sbjct: 145 VKLADFGLAIE----------------VQGDQ--------QAWFGFA------------- 167
Query: 287 CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
                       G PG                     YL+PE++  E +G  VD W  G+
Sbjct: 168 ------------GTPG---------------------YLSPEVLRKEAYGKPVDIWACGV 194
Query: 347 FIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            ++ L  G  PF   D       + A A +F  P+  +V   AK+LI Q+L  +P +R+
Sbjct: 195 ILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRI 253

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+  Q+K+     G  +A K ++K+ L  R     A +E++IL  +   F+ 
Sbjct: 193 LGRGGFGEVFACQMKA----TGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIV 248
Query: 150 TLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +L    +     CL+     GGD+  H+    + +  F E    FY +++V  LE LH  
Sbjct: 249 SLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR 308
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
            IIYRDLKPENVL+  DG++ ++D  L+++
Sbjct: 309 NIIYRDLKPENVLLDDDGNVRISDLGLAVE 338

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLA 368
            ++  + GT  ++APE++ GE +  +VD++ LG+ ++E+     PF+     ++++    
Sbjct: 344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ 403
Query: 369 NVVARALEFPKEPSVPGPA-KDLIAQLLVKDPTRRMGSKMGAT-AIKRHQFFNGVNWALL 426
            V+ +A+ +P + S   PA KD    LL KDP +R+G + G+   ++ H  F  ++W  L
Sbjct: 404 RVLEQAVTYPDKFS---PASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL 460
Query: 427 RCA--KPPFIP 435
                 PPF+P
Sbjct: 461 EAGMLTPPFVP 471

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 66
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G+  V ++ Q   +F E     Y +E+  
Sbjct: 67  QSHLRHPNILRLYGYFHDATRVYLILEYAPRGE--VYKELQKLSKFDEQRTATYITELAN 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 125 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 166

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R     GT +YL PE+I G  H   VD W+LG+  +E   G  PF+   ++ T   +   
Sbjct: 167 RRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 226
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
              FP    V   A+DLI++LL  +P++R
Sbjct: 227 EFTFPD--FVTEGARDLISRLLKHNPSQR 253

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 63
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 64  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 121
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 122 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 163

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 62
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           AL + H   +I+RD+KPEN+L+ S G + + DF  S    +S  T
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRT 165

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 62
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 121 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 164

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 61
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 62  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 120 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 161

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 63
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 64  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 121
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + +F  S+   +S  T 
Sbjct: 122 ALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTT 167

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL + H   +I+RD+KPEN+L+ S G + + +F  S+   +S  T 
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTT 168

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL    ++   +    A KV+ K +L     E + R E EI
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYL----AREKQSKFILALKVLFKAQLEKAGVEHQLRREVEI 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G   V R+ Q   +F E     Y +E+  
Sbjct: 65  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGT--VYRELQKLSKFDEQRTATYITELAN 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S
Sbjct: 123 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 164

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           +R  +  GT +YL PE+I G  H   VD W +G+  +EL  G  PF+   H  T   +V 
Sbjct: 176 LRRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNETYRRIVK 235
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
             L+FP   SVP  A+DLI++LL  +P+ R+
Sbjct: 236 VDLKFP--ASVPTGAQDLISKLLRHNPSERL 264

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 16/201 (7%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
             F   LG+G    V L + K+     G  FA K + K+ L  + KES    E  +L  +
Sbjct: 24  FEFKETLGTGAFSEVVLAEEKA----TGKLFAVKCIPKKAL--KGKESSIENEIAVLRKI 77
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH-ESAVRFYASEVVVALE 202
            H  +  L    + P    L+ +   GG+L     R  +K F+ E        +V+ A+ 
Sbjct: 78  KHENIVALEDIYESPNHLYLVMQLVSGGELF---DRIVEKGFYTEKDASTLIRQVLDAVY 134
Query: 203 FLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSL---KGDNSTSTAQLVSDQSPPTG 256
           +LH MGI++RDLKPEN+L  S   +  IM++DF LS    KGD  ++        +P   
Sbjct: 135 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 194
Query: 257 DQQPNDCAVDQPPFGNSSCII 277
            Q+P   AVD    G  + I+
Sbjct: 195 AQKPYSKAVDCWSIGVIAYIL 215

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF   +       ++    EF  
Sbjct: 184 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDS 243
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG 420
           P    +   AKD I  L+ KDP +R   +  A    RH +  G
Sbjct: 244 PYWDDISDSAKDFIRNLMEKDPNKRYTCEQAA----RHPWIAG 282

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 83/325 (25%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
           + + + V  LG G  G V L    +  +  G   A K+++K+ L   + +   RIEREI 
Sbjct: 13  IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVLAKSDMQ--GRIEREIS 66
Query: 140 -LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            L +L HP +  LY  +       ++ E+        + QR  DK   + A RF+  +++
Sbjct: 67  YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFF-QQII 123
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            A+E+ H   I++RDLKPEN+L+    ++ + DF LS           +++D +      
Sbjct: 124 SAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS----------NIMTDGN------ 167
Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      F  +SC  PN                        PE+++  L       
Sbjct: 168 -----------FLKTSCGSPNY---------------------AAPEVISGKL------- 188
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
                Y  PE          VD W+ G+ ++ +     PF      +   N+       P
Sbjct: 189 -----YAGPE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 233
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRM 403
           K  S PG A  LI ++L+ +P  R+
Sbjct: 234 KFLS-PGAA-GLIKRMLIVNPLNRI 256

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 83/325 (25%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
           + + + V  LG G  G V L    +  +  G   A K+++K+ L   + +   RIEREI 
Sbjct: 12  IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVLAKSDMQ--GRIEREIS 65
Query: 140 -LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            L +L HP +  LY  +       ++ E+        + QR  DK   + A RF+  +++
Sbjct: 66  YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFF-QQII 122
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            A+E+ H   I++RDLKPEN+L+    ++ + DF LS           +++D +      
Sbjct: 123 SAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS----------NIMTDGN------ 166
Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      F  +SC  PN                        PE+++  L       
Sbjct: 167 -----------FLKTSCGSPNY---------------------AAPEVISGKL------- 187
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
                Y  PE          VD W+ G+ ++ +     PF      +   N+       P
Sbjct: 188 -----YAGPE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 232
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRM 403
           K  S PG A  LI ++L+ +P  R+
Sbjct: 233 KFLS-PGAA-GLIKRMLIVNPLNRI 255

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 83/325 (25%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
           + + + V  LG G  G V L    +  +  G   A K+++K+ L   + +   RIEREI 
Sbjct: 7   IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVLAKSDMQ--GRIEREIS 60
Query: 140 -LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            L +L HP +  LY  +       ++ E+        + QR  DK   + A RF+  +++
Sbjct: 61  YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFF-QQII 117
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            A+E+ H   I++RDLKPEN+L+    ++ + DF LS           +++D +      
Sbjct: 118 SAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS----------NIMTDGN------ 161
Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      F  +SC  PN                        PE+++  L       
Sbjct: 162 -----------FLKTSCGSPNY---------------------AAPEVISGKL------- 182
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
                Y  PE          VD W+ G+ ++ +     PF      +   N+       P
Sbjct: 183 -----YAGPE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 227
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRM 403
           K  S PG A  LI ++L+ +P  R+
Sbjct: 228 KFLS-PGAA-GLIKRMLIVNPLNRI 250

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 83/325 (25%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
           + + + V  LG G  G V L    +  +  G   A K+++K+ L   + +   RIEREI 
Sbjct: 3   IGNYQIVKTLGEGSFGKVKL----AYHTTTGQKVALKIINKKVLAKSDMQ--GRIEREIS 56
Query: 140 -LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
            L +L HP +  LY  +       ++ E+        + QR  DK   + A RF+  +++
Sbjct: 57  YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFF-QQII 113
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            A+E+ H   I++RDLKPEN+L+    ++ + DF LS           +++D +      
Sbjct: 114 SAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS----------NIMTDGN------ 157
Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      F  +SC  PN                        PE+++  L       
Sbjct: 158 -----------FLKTSCGSPNY---------------------AAPEVISGKL------- 178
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
                Y  PE          VD W+ G+ ++ +     PF      +   N+       P
Sbjct: 179 -----YAGPE----------VDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLP 223
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRM 403
           K  S PG A  LI ++L+ +P  R+
Sbjct: 224 KFLS-PGAA-GLIKRMLIVNPLNRI 246

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFL 148
           LG G  G V L   K K +   C  A KV+ KR++  + +KES  R E ++L+ LDHP +
Sbjct: 57  LGKGSFGEVILC--KDKITGQEC--AVKVISKRQVKQKTDKESLLR-EVQLLKQLDHPNI 111
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             LY   +   +  L+ E   GG+L    +    KRF E        +V+  + ++H   
Sbjct: 112 MKLYEFFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNK 169
Query: 209 IIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           I++RDLKPEN+L+ S   D +I + DF LS
Sbjct: 170 IVHRDLKPENLLLESKSKDANIRIIDFGLS 199

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALE 376
           +GT  Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V       E
Sbjct: 212 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 270
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+   V   AKDLI ++L   P+ R+ ++
Sbjct: 271 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 300

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFL 148
           LG G  G V L   K K +   C  A KV+ KR++  + +KES  R E ++L+ LDHP +
Sbjct: 58  LGKGSFGEVILC--KDKITGQEC--AVKVISKRQVKQKTDKESLLR-EVQLLKQLDHPNI 112
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             LY   +   +  L+ E   GG+L    +    KRF E        +V+  + ++H   
Sbjct: 113 MKLYEFFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNK 170
Query: 209 IIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           I++RDLKPEN+L+ S   D +I + DF LS
Sbjct: 171 IVHRDLKPENLLLESKSKDANIRIIDFGLS 200

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALE 376
           +GT  Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V       E
Sbjct: 213 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 271
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+   V   AKDLI ++L   P+ R+ ++
Sbjct: 272 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 301

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFL 148
           LG G  G V L   K K +   C  A KV+ KR++  + +KES  R E ++L+ LDHP +
Sbjct: 40  LGKGSFGEVILC--KDKITGQEC--AVKVISKRQVKQKTDKESLLR-EVQLLKQLDHPNI 94
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             LY   +   +  L+ E   GG+L    +    KRF E        +V+  + ++H   
Sbjct: 95  MKLYEFFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNK 152
Query: 209 IIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           I++RDLKPEN+L+ S   D +I + DF LS
Sbjct: 153 IVHRDLKPENLLLESKSKDANIRIIDFGLS 182

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALE 376
           +GT  Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V       E
Sbjct: 195 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 253
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+   V   AKDLI ++L   P+ R+ ++
Sbjct: 254 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 283

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFL 148
           LG G  G V L   K K +   C  A KV+ KR++  + +KES  R E ++L+ LDHP +
Sbjct: 34  LGKGSFGEVILC--KDKITGQEC--AVKVISKRQVKQKTDKESLLR-EVQLLKQLDHPNI 88
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             LY   +   +  L+ E   GG+L    +    KRF E        +V+  + ++H   
Sbjct: 89  MKLYEFFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYMHKNK 146
Query: 209 IIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           I++RDLKPEN+L+ S   D +I + DF LS
Sbjct: 147 IVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALE 376
           +GT  Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V       E
Sbjct: 189 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 247
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+   V   AKDLI ++L   P+ R+ ++
Sbjct: 248 LPQWKKVSESAKDLIRKMLTYVPSMRISAR 277

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  LG G  G VY    K+++       AAKV+D +   S  +     +E +IL   D
Sbjct: 40  EIIGELGDGAFGKVY----KAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCD 92
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGG--DLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           HP +  L           +L EFC GG  D  +L   +P     ES ++    + + AL 
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALN 149
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
           +LH   II+RDLK  N+L   DG I L DF +S K 
Sbjct: 150 YLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  LG G  G VY    K+++       AAKV+D +   S  +     +E +IL   D
Sbjct: 40  EIIGELGDGAFGKVY----KAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCD 92
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGG--DLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           HP +  L           +L EFC GG  D  +L   +P     ES ++    + + AL 
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALN 149
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
           +LH   II+RDLK  N+L   DG I L DF +S K 
Sbjct: 150 YLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  LG G  G VY    K+++       AAKV+D +   S  +     +E +IL   D
Sbjct: 40  EIIGELGDGAFGKVY----KAQNKETSVLAAAKVIDTK---SEEELEDYMVEIDILASCD 92
Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGG--DLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           HP +  L           +L EFC GG  D  +L   +P     ES ++    + + AL 
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP---LTESQIQVVCKQTLDALN 149
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
           +LH   II+RDLK  N+L   DG I L DF +S K 
Sbjct: 150 YLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-NKESRARIEREILEMLDHPFL 148
           LG G  G V L   K K +   C  A KV+ KR++  + +KES  R E ++L+ LDHP +
Sbjct: 34  LGKGSFGEVILC--KDKITGQEC--AVKVISKRQVKQKTDKESLLR-EVQLLKQLDHPNI 88
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             LY   +   +  L+ E   GG+L    +    KRF E        +V+  + + H   
Sbjct: 89  XKLYEFFEDKGYFYLVGEVYTGGEL--FDEIISRKRFSEVDAARIIRQVLSGITYXHKNK 146
Query: 209 IIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           I++RDLKPEN+L+ S   D +I + DF LS
Sbjct: 147 IVHRDLKPENLLLESKSKDANIRIIDFGLS 176

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV--ARALE 376
           +GT  Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V       E
Sbjct: 189 IGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFE 247
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+   V   AKDLI + L   P+ R+ ++
Sbjct: 248 LPQWKKVSESAKDLIRKXLTYVPSXRISAR 277

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 93/335 (27%)
Query: 90  LGSGDIGSVYL-VQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
           LG G  G V L    K++      F + +++ K ++         R+EREI  L++L HP
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDM-------HMRVEREISYLKLLRHP 69
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  LY  +  P    ++ E+  G     + ++   KR  E   R +  +++ A+E+ H 
Sbjct: 70  HIIKLYDVITTPTDIVMVIEYAGGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHR 126
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
             I++RDLKPEN+L+  + ++ + DF LS           +++D +              
Sbjct: 127 HKIVHRDLKPENLLLDDNLNVKIADFGLS----------NIMTDGN-------------- 162
Query: 267 QPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA 326
              F  +SC  PN                        PE++   L            Y  
Sbjct: 163 ---FLKTSCGSPNY---------------------AAPEVINGKL------------YAG 186
Query: 327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL--TLANVVARALEFPKEPSVP 384
           PE          VD W+ GI ++ +  G  PF   D E    L   V   +    +   P
Sbjct: 187 PE----------VDVWSCGIVLYVMLVGRLPF---DDEFIPNLFKKVNSCVYVMPDFLSP 233
Query: 385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
           G A+ LI +++V DP +R+  +     I+R  +FN
Sbjct: 234 G-AQSLIRRMIVADPMQRITIQ----EIRRDPWFN 263

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D +  + LG G    VY    +++S + G   A K++DK+ +       R + E +I 
Sbjct: 10  IEDFKVGNLLGKGSFAGVY----RAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH 65
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVV 199
             L HP +  LY   +   +  L+ E C  G+++  L+ R   K F E+  R +  +++ 
Sbjct: 66  CQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIIT 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            + +LH  GI++RDL   N+L+  + +I + DF L+
Sbjct: 124 GMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 284 AVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWT 343
            +S L   R    K+ + G    +  P + +  +  GT  Y++PEI +   HG   D W+
Sbjct: 139 TLSNLLLTRNMNIKIADFGLATQLKMPHE-KHYTLCGTPNYISPEIATRSAHGLESDVWS 197
Query: 344 LGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
           LG   + L  G  PF     + TL  VV    E P   S+   AKDLI QLL ++P  R+
Sbjct: 198 LGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSI--EAKDLIHQLLRRNPADRL 255

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 112/300 (37%), Gaps = 72/300 (24%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLTE 166
             G  FA K++D  +  S    S   ++RE  I  ML HP +  L  T        ++ E
Sbjct: 49  ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFE 108
Query: 167 FCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
           F  G DL   ++++      + E+    Y  +++ AL + H   II+RD+KP  VL+ S 
Sbjct: 109 FMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLAS- 167
Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
                                             + N   V    FG +  +  + +V  
Sbjct: 168 ----------------------------------KENSAPVKLGGFGVAIQLGESGLVAG 193
Query: 285 VSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTL 344
                         G  GTP  +A                  PE++  E +G  VD W  
Sbjct: 194 --------------GRVGTPHFMA------------------PEVVKREPYGKPVDVWGC 221
Query: 345 GIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRM 403
           G+ +F L  G  PF G    L    +  +    P++ S +   AKDL+ ++L+ DP  R+
Sbjct: 222 GVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI 281

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 112/300 (37%), Gaps = 72/300 (24%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLTE 166
             G  FA K++D  +  S    S   ++RE  I  ML HP +  L  T        ++ E
Sbjct: 47  ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFE 106
Query: 167 FCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
           F  G DL   ++++      + E+    Y  +++ AL + H   II+RD+KP  VL+ S 
Sbjct: 107 FMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLAS- 165
Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
                                             + N   V    FG +  +  + +V  
Sbjct: 166 ----------------------------------KENSAPVKLGGFGVAIQLGESGLVAG 191
Query: 285 VSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTL 344
                         G  GTP  +A                  PE++  E +G  VD W  
Sbjct: 192 --------------GRVGTPHFMA------------------PEVVKREPYGKPVDVWGC 219
Query: 345 GIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRM 403
           G+ +F L  G  PF G    L    +  +    P++ S +   AKDL+ ++L+ DP  R+
Sbjct: 220 GVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI 279

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 127/330 (38%), Gaps = 82/330 (24%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V +     K    G   A K+++++++ S +   + R E + L++  HP + 
Sbjct: 24  LGVGTFGKVKV----GKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHII 79
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            LY  +  P    ++ E+  GG+L        + R  E   R    +++  +++ H   +
Sbjct: 80  KLYQVISTPSDIFMVMEYVSGGEL--FDYICKNGRLDEKESRRLFQQILSGVDYCHRHMV 137
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           ++RDLKPENVL+ +  +  + DF LS           ++SD                   
Sbjct: 138 VHRDLKPENVLLDAHMNAKIADFGLS----------NMMSDGE----------------- 170
Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
           F   SC  PN                        PE+++  L            Y  PE 
Sbjct: 171 FLRXSCGSPNY---------------------AAPEVISGRL------------YAGPE- 196
Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
                    VD W+ G+ ++ L  GT PF   DH  TL   +   + +  +   P     
Sbjct: 197 ---------VDIWSSGVILYALLCGTLPFDD-DHVPTLFKKICDGIFYTPQYLNPS-VIS 245
Query: 390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
           L+  +L  DP +R   K     I+ H++F 
Sbjct: 246 LLKHMLQVDPMKRATIK----DIREHEWFK 271

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V +LGSG  G V L     K    G   A K++ K  + + +       E  +L+ LDHP
Sbjct: 9   VKKLGSGAYGEVLLC----KDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHP 64
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLH---VLRQRQPDKRFHESAVRFYASEVVVALEF 203
            +  LY   +  R   L+ E   GG+L    +LRQ+     F E        +V+    +
Sbjct: 65  NIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQVLSGTTY 119
Query: 204 LHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           LH   I++RDLKPEN+L+ S   D  I + DF LS
Sbjct: 120 LHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 154

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF- 377
           +GT  Y+APE++  + +    D W+ G+ ++ L  G  PF G   +  L  V      F 
Sbjct: 167 LGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFD 225
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P    V   AK L+  +L  +P++R+ ++
Sbjct: 226 PPDWTQVSDEAKQLVKLMLTYEPSKRISAE 255

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V +LGSG  G V L     K    G   A K++ K  + + +       E  +L+ LDHP
Sbjct: 26  VKKLGSGAYGEVLLC----KDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHP 81
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLH---VLRQRQPDKRFHESAVRFYASEVVVALEF 203
            +  LY   +  R   L+ E   GG+L    +LRQ+     F E        +V+    +
Sbjct: 82  NIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-----FSEVDAAVIMKQVLSGTTY 136
Query: 204 LHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           LH   I++RDLKPEN+L+ S   D  I + DF LS
Sbjct: 137 LHKHNIVHRDLKPENLLLESKSRDALIKIVDFGLS 171

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF- 377
           +GT  Y+APE++  + +    D W+ G+ ++ L  G  PF G   +  L  V      F 
Sbjct: 184 LGTAYYIAPEVLRKK-YDEKCDVWSCGVILYILLCGYPPFGGQTDQEILKRVEKGKFSFD 242
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P    V   AK L+  +L  +P++R+ ++
Sbjct: 243 PPDWTQVSDEAKQLVKLMLTYEPSKRISAE 272

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A K++DK +L S + +   R E  I+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIM 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 231 RIPFYMST--DCENLLKKFLILNPSKR 255

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A K++DK +L S + +   R E  I+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIM 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G   Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 231 RIPFYMST--DCENLLKKFLILNPSKR 255

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A K++DK +L S + +   R E  I+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIM 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 231 RIPFYMST--DCENLLKKFLILNPSKR 255

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +  GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TL N+ A   +
Sbjct: 170 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYD 229
Query: 377 FPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
           F +E   +    AKD I +LLVKDP RRM
Sbjct: 230 FDEEYFSNTSELAKDFIRRLLVKDPKRRM 258

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TL N+ A   +F +
Sbjct: 194 GTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDE 253
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRM 403
           E   +    AKD I +LLVKDP RRM
Sbjct: 254 EYFSNTSELAKDFIRRLLVKDPKRRM 279

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TL N+ A   +F +
Sbjct: 180 GTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDE 239
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRM 403
           E   +    AKD I +LLVKDP RRM
Sbjct: 240 EYFSNTSELAKDFIRRLLVKDPKRRM 265

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A +++DK +L S + +   R E  I+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIM 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 171 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 231 RIPFYMST--DCENLLKKFLILNPSKR 255

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A K++DK +L S + +   R E  I 
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIX 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVXEYASGGE--VFDYLVAHGRXKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFS 160

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G   Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 171 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 230
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 231 RIPFYXST--DCENLLKKFLILNPSKR 255

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
           + + R +  +G G+   V L    ++    G   A K++DK +L   N  S  ++ RE  
Sbjct: 14  IGNYRLLKTIGKGNFAKVKL----ARHILTGREVAIKIIDKTQL---NPTSLQKLFREVR 66
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V
Sbjct: 67  IMKILNHPNIVKLFEVIETEKTLYLIMEYASGGE--VFDYLVAHGRMKEKEARSKFRQIV 124
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            A+++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 125 SAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G   Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 172 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 231
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + LV +P +R
Sbjct: 232 RIPFYMST--DCENLLKRFLVLNPIKR 256

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 7/155 (4%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + R +  +G G+   V L    ++    G   A +++DK +L S + +   R E  I+
Sbjct: 13  IGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIM 67
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           ++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V A
Sbjct: 68  KVLNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIVSA 125
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 126 VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 160

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 318 FVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+     
Sbjct: 172 FCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 231
Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRR 402
            P   S     ++L+ + L+ +P++R
Sbjct: 232 IPFYMST--DCENLLKKFLILNPSKR 255

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
           + + R +  +G G+   V L    ++    G   A K++DK +L   N  S  ++ RE  
Sbjct: 11  IGNYRLLKTIGKGNFAKVKL----ARHILTGREVAIKIIDKTQL---NPTSLQKLFREVR 63
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V
Sbjct: 64  IMKILNHPNIVKLFEVIETEKTLYLIMEYASGGE--VFDYLVAHGRMKEKEARSKFRQIV 121
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            A+++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 122 SAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFS 158

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 169 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 228
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + LV +P +R
Sbjct: 229 RIPFYMST--DCENLLKRFLVLNPIKR 253

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 78/299 (26%)
Query: 110 NGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP 169
            G  +AAK+++ ++L +R+ +   R E  I  +L HP +  L+ ++    +  L+ +   
Sbjct: 28  TGQEYAAKIINTKKLSARDHQKLER-EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVT 86
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--- 226
           GG+L         + + E+       +++ ++   H+ GI++RDLKPEN+L+ S      
Sbjct: 87  GGEL--FEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAA 144
Query: 227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVS 286
           + L DF L+++                  GDQQ        P +                
Sbjct: 145 VKLADFGLAIE----------------VQGDQQAWFGFAGTPGY---------------- 172
Query: 287 CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
            L P+  RK   G P                                     VD W  G+
Sbjct: 173 -LSPEVLRKDPYGKP-------------------------------------VDMWACGV 194
Query: 347 FIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            ++ L  G  PF   D       + A A +F  P+  +V   AKDLI ++L  +P +R+
Sbjct: 195 ILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRI 253

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 78/299 (26%)
Query: 110 NGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCP 169
            G  +AAK+++ ++L +R+ +   R E  I  +L HP +  L+ ++    +  L+ +   
Sbjct: 28  TGQEYAAKIINTKKLSARDHQKLER-EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVT 86
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--- 226
           GG+L         + + E+       +++ ++   H+ GI++RDLKPEN+L+ S      
Sbjct: 87  GGEL--FEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAA 144
Query: 227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVS 286
           + L DF L+++                  GDQQ        P +                
Sbjct: 145 VKLADFGLAIE----------------VQGDQQAWFGFAGTPGY---------------- 172
Query: 287 CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
            L P+  RK   G P                                     VD W  G+
Sbjct: 173 -LSPEVLRKDPYGKP-------------------------------------VDMWACGV 194
Query: 347 FIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            ++ L  G  PF   D       + A A +F  P+  +V   AKDLI ++L  +P +R+
Sbjct: 195 ILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRI 253

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 130/332 (39%), Gaps = 86/332 (25%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V +     +    G   A K+++++++  R+ +   +I+REI  L++  HP 
Sbjct: 19  LGVGTFGKVKI----GEHQLTGHKVAVKILNRQKI--RSLDVVGKIKREIQNLKLFRHPH 72
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +  LY  +  P    ++ E+  GG+L     +    R  E   R    +++ A+++ H  
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRH 130
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
            +++RDLKPENVL+ +  +  + DF LS    N  S  + + D                 
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSDGEFLRD----------------- 169
Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
                             SC  P         N   PE+++  L            Y  P
Sbjct: 170 ------------------SCGSP---------NYAAPEVISGRL------------YAGP 190
Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPA 387
           E          VD W+ G+ ++ L  GT PF   +H  TL   + R   F     +    
Sbjct: 191 E----------VDIWSCGVILYALLCGTLPFDD-EHVPTLFKKI-RGGVFYIPEYLNRSV 238
Query: 388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             L+  +L  DP +R   K     I+ H++F 
Sbjct: 239 ATLLMHMLQVDPLKRATIK----DIREHEWFK 266

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 78/298 (26%)
Query: 111 GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPG 170
           G  +AAK+++ ++L +R+ +   R E  I  +L HP +  L+ ++       L+ +   G
Sbjct: 47  GQEYAAKIINTKKLSARDHQKLER-EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTG 105
Query: 171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHI 227
           G+L         + + E+       +++ A+   H MG+++RDLKPEN+L+ S      +
Sbjct: 106 GEL--FEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAV 163
Query: 228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSC 287
            L DF L+++ +                G+QQ        P +                 
Sbjct: 164 KLADFGLAIEVE----------------GEQQAWFGFAGTPGY----------------- 190
Query: 288 LHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIF 347
           L P+  RK   G P                                     VD W  G+ 
Sbjct: 191 LSPEVLRKDPYGKP-------------------------------------VDLWACGVI 213
Query: 348 IFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           ++ L  G  PF   D       + A A +F  P+  +V   AKDLI ++L  +P++R+
Sbjct: 214 LYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 271

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
           + + R    +G G+   V L    ++    G   A K++DK +L   N  S  ++ RE  
Sbjct: 14  IGNYRLQKTIGKGNFAKVKL----ARHVLTGREVAVKIIDKTQL---NPTSLQKLFREVR 66
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+++L+HP +  L+  ++  +   L+ E+  GG+  V        R  E   R    ++V
Sbjct: 67  IMKILNHPNIVKLFEVIETEKTLYLVMEYASGGE--VFDYLVAHGRMKEKEARAKFRQIV 124
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            A+++ H   I++RDLK EN+L+  D +I + DF  S
Sbjct: 125 SAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGFS 161

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 132/332 (39%), Gaps = 86/332 (25%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V +     +    G   A K+++++++  R+ +   +I+REI  L++  HP 
Sbjct: 19  LGVGTFGKVKI----GEHQLTGHKVAVKILNRQKI--RSLDVVGKIKREIQNLKLFRHPH 72
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +  LY  +  P    ++ E+  GG+L     +    R  E   R    +++ A+++ H  
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRH 130
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
            +++RDLKPENVL+ +  +  + DF LS           ++SD                 
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLS----------NMMSDGE--------------- 165
Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
             F  +SC  PN                        PE+++  L            Y  P
Sbjct: 166 --FLRTSCGSPNY---------------------AAPEVISGRL------------YAGP 190
Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPA 387
           E          VD W+ G+ ++ L  GT PF   +H  TL   +   + +  E  +    
Sbjct: 191 E----------VDIWSCGVILYALLCGTLPFDD-EHVPTLFKKIRGGVFYIPE-YLNRSV 238
Query: 388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             L+  +L  DP +R   K     I+ H++F 
Sbjct: 239 ATLLMHMLQVDPLKRATIK----DIREHEWFK 266

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L + + R +  +G G+   V L    ++    G   A K++DK +L S + +   R E  
Sbjct: 4   LHIGNYRLLKTIGKGNFAKVKL----ARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVR 58
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+++L+HP +  L+  ++  +   L+ E+  GG++          +  E+  +F   ++V
Sbjct: 59  IMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKF--RQIV 116
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            A+++ H   I++RDLK EN+L+ +D +I + DF  S
Sbjct: 117 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFS 153

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 317 SFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           +F G+  Y APE+  G+ + G  VD W+LG+ ++ L  G+ PF G + +     V+    
Sbjct: 164 TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKY 223
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   S     ++L+ + L+ +P++R
Sbjct: 224 RIPFYMST--DCENLLKKFLILNPSKR 248

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIER-------- 137
           V +LGSG  G V L + K+  S      A KV+ K +    R  +    IE+        
Sbjct: 41  VRKLGSGAYGEVLLCKEKNGHSEK----AIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNE 96
Query: 138 -EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
             +L+ LDHP +  L+   +  ++  L+TEF  GG+L    Q     +F E        +
Sbjct: 97  ISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGEL--FEQIINRHKFDECDAANIMKQ 154
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDFDLS 235
           ++  + +LH   I++RD+KPEN+L+ +     +I + DF LS
Sbjct: 155 ILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLS 196

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ A + +F +
Sbjct: 180 GTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDE 239
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRM 403
           E        AKD I +LLVK+  +R+
Sbjct: 240 EFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G    +    ++R +  +GT EYLAPEI++ +    A D W +GI  + L   T+
Sbjct: 174 KIVDFGMSRKIGHACELREI--MGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTS 231
Query: 357 PFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRR 402
           PF G D++ T  N+    +++ +E   SV   A D I  LLVK+P +R
Sbjct: 232 PFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKR 279

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G   LV    KS+ +G  +  K ++   + S+ +E  +R E  +L  + HP
Sbjct: 29  LQKIGEGSFGKAILV----KSTEDGRQYVIKEINISRMSSKEREE-SRREVAVLANMKHP 83
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +     + +      ++ ++C GGDL      Q    F E  +  +  ++ +AL+ +H 
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD 143
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RD+K +N+ +  DG + L DF ++
Sbjct: 144 RKILHRDIKSQNIFLTKDGTVQLGDFGIA 172

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 85/342 (24%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           SD   +  LG G  G V    +K++++ +  ++A K +   E     K S    E  +L 
Sbjct: 6   SDFEEIAVLGQGAFGQV----VKARNALDSRYYAIKKIRHTE----EKLSTILSEVMLLA 57
Query: 142 MLDHPFLPTLYAT-----------LDCPRWSCLLT--EFCPGGDLHVLRQRQPDKRFHES 188
            L+H ++   YA                + S L    E+C  G L+ L   +   +  + 
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDE 117
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
             R +  +++ AL ++H  GII+RDLKP N+ +    ++ + DF L+     S    +L 
Sbjct: 118 YWRLF-RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA 308
           S   P + D               +S I                         GT   VA
Sbjct: 177 SQNLPGSSDNL-------------TSAI-------------------------GTAMYVA 198
Query: 309 EPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFK-GIDHELT 366
                              E++ G GH N  +D ++LGI  FE+ Y   PF  G++    
Sbjct: 199 ------------------TEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNI 237
Query: 367 LANVVARALEFP--KEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
           L  + + ++EFP   + +     K +I  L+  DP +R G++
Sbjct: 238 LKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 121/320 (37%), Gaps = 85/320 (26%)
Query: 110 NGCFFAAKVMD---KRELVSRNKESRARIERE---ILEMLDHPFLPTLYATLDCPRWSCL 163
            G  FA K+M+   +R    + +E R    RE   + ++  HP + TL  + +   +  L
Sbjct: 118 TGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFL 177
Query: 164 LTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           + +    G+L   L ++       E   R     ++ A+ FLH   I++RDLKPEN+L+ 
Sbjct: 178 VFDLMRKGELFDYLTEKVA---LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLD 234
Query: 223 SDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIV 282
            +  I L+DF  S                                               
Sbjct: 235 DNMQIRLSDFGFSCH--------------------------------------------- 249
Query: 283 PAVSCLHPKRRRKKKLGNPG--TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVD 340
                L P  + ++  G PG   PEI+   +D        TH           G+G  VD
Sbjct: 250 -----LEPGEKLRELCGTPGYLAPEILKCSMD-------ETH----------PGYGKEVD 287
Query: 341 WWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKD 398
            W  G+ +F L  G+ PF      L L  ++    +F  P+        KDLI++LL  D
Sbjct: 288 LWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVD 347
Query: 399 PTRRMGSKMGATAIKRHQFF 418
           P  R+ ++       +H FF
Sbjct: 348 PEARLTAEQAL----QHPFF 363

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V +LGSG  G V L + K          A K++ K   VS +  S+   E  +L++LDHP
Sbjct: 42  VKKLGSGAYGEVLLCRDKVTHVER----AIKIIRKTS-VSTSSNSKLLEEVAVLKLLDHP 96
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            +  LY   +  R   L+ E   GG+L   ++ +     +F+E        +V+  + +L
Sbjct: 97  NIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRM----KFNEVDAAVIIKQVLSGVTYL 152
Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           H   I++RDLKPEN+L+ S   D  I + DF LS
Sbjct: 153 HKHNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF- 377
           +GT  Y+APE++  + +    D W++G+ +F L  G  PF G   +  L  V      F 
Sbjct: 199 LGTAYYIAPEVLRKK-YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFD 257
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
            P+  +V   AKDLI Q+L  D  RR+ ++
Sbjct: 258 SPEWKNVSEGAKDLIKQMLQFDSQRRISAQ 287

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ A + +F +
Sbjct: 180 GTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDE 239
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRM 403
           E        AKD I +LLVK+  +R+
Sbjct: 240 EFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V   +  GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ A
Sbjct: 173 VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITA 232
Query: 373 RALEFPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
            + +F +E        AKD I +LLVK+  +R+
Sbjct: 233 VSYDFDEEFFSQTSELAKDFIRKLLVKETRKRL 265

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+++ +LG G+ GSV L +      N G   A K +        +++   + E +IL+ L
Sbjct: 13  LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKAL 69
Query: 144 DHPFLPTLYATLDCP-RWSC-LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              F+         P R S  L+ E+ P G L    QR    R   S +  Y+S++   +
Sbjct: 70  HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGM 128
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N+LV S+ H+ + DF L+
Sbjct: 129 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 162

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 116/298 (38%), Gaps = 78/298 (26%)
Query: 111 GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPG 170
           G  +AA +++ ++L +R+ +   R E  I  +L HP +  L+ ++       L+ +   G
Sbjct: 36  GQEYAAMIINTKKLSARDHQKLER-EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTG 94
Query: 171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHI 227
           G+L         + + E+       +++ A+   H MG+++R+LKPEN+L+ S      +
Sbjct: 95  GEL--FEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAV 152
Query: 228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSC 287
            L DF L+++ +                G+QQ        P +                 
Sbjct: 153 KLADFGLAIEVE----------------GEQQAWFGFAGTPGY----------------- 179
Query: 288 LHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIF 347
           L P+  RK   G P                                     VD W  G+ 
Sbjct: 180 LSPEVLRKDPYGKP-------------------------------------VDLWACGVI 202
Query: 348 IFELFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           ++ L  G  PF   D       + A A +F  P+  +V   AKDLI ++L  +P++R+
Sbjct: 203 LYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRI 260

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+++ +LG G+ GSV L +      N G   A K +        +++   + E +IL+ L
Sbjct: 12  LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKAL 68
Query: 144 DHPFLPTLYATLDCP-RWSC-LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              F+         P R S  L+ E+ P G L    QR    R   S +  Y+S++   +
Sbjct: 69  HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGM 127
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N+LV S+ H+ + DF L+
Sbjct: 128 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 161

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+++ +LG G+ GSV L +      N G   A K +        +++   + E +IL+ L
Sbjct: 25  LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKAL 81
Query: 144 DHPFLPTLYATLDCP-RWSC-LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              F+         P R S  L+ E+ P G L    QR    R   S +  Y+S++   +
Sbjct: 82  HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGM 140
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N+LV S+ H+ + DF L+
Sbjct: 141 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 110/302 (36%), Gaps = 101/302 (33%)
Query: 163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           L+ E   GG   +L      + F+E        +V  AL+FLH  GI +RDLKPEN+L  
Sbjct: 88  LVFEKMRGGS--ILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCE 145
Query: 223 SDGHI---MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPN 279
               +    + DFDL        S  +L  D SP +                        
Sbjct: 146 HPNQVSPVKICDFDLG-------SGIKLNGDCSPIS------------------------ 174
Query: 280 CIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAV 339
                                  TPE+         ++  G+ EY+APE++       ++
Sbjct: 175 -----------------------TPEL---------LTPCGSAEYMAPEVVEAFSEEASI 202
Query: 340 -----DWWTLGIFIFELFYGTTPFKG---------------IDHELTLANVVARALEFPK 379
                D W+LG+ ++ L  G  PF G                   +   ++     EFP 
Sbjct: 203 YDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPD 262
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
           +    +   AKDLI++LLV+D  +R    + A  + +H +  G       CA    +P P
Sbjct: 263 KDWAHISCAAKDLISKLLVRDAKQR----LSAAQVLQHPWVQG-------CAPENTLPTP 311
Query: 438 VT 439
           + 
Sbjct: 312 MV 313

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 18/176 (10%)
Query: 80  TLSDLR-FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           T+ DL  F  +LGSG  G V+LV+ +S    +G     K ++K     R++    +IE E
Sbjct: 19  TIDDLFIFKRKLGSGAFGDVHLVEERS----SGLERVIKTINK----DRSQVPMEQIEAE 70
Query: 139 I--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYA 194
           I  L+ LDHP +  ++   +      ++ E C GG+L   ++  +   K   E  V    
Sbjct: 71  IEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELM 130
Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDG-H--IMLTDFDLS--LKGDNSTSTA 245
            +++ AL + H   ++++DLKPEN+L +    H  I + DF L+   K D  ++ A
Sbjct: 131 KQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNA 186

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D  S +  GT  Y+APE+   +      D W+ G+ ++ L  G  PF G   E       
Sbjct: 180 DEHSTNAAGTALYMAPEVFKRDVTFKC-DIWSAGVVMYFLLTGCLPFTGTSLEEVQQKAT 238
Query: 372 ARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
            +   +  E  P  P  A DL+ Q+L KDP RR      A  +  H++F 
Sbjct: 239 YKEPNYAVECRPLTP-QAVDLLKQMLTKDPERR----PSAAQVLHHEWFK 283

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 126/340 (37%), Gaps = 92/340 (27%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--L 143
            V  +GSG+ G   L  ++ K SN     A K +++ E +  N      ++REI+    L
Sbjct: 23  LVKDIGSGNFGVARL--MRDKQSNE--LVAVKYIERGEKIDEN------VKREIINHRSL 72
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            HP +      +  P    ++ E+  GG+L    +     RF E   RF+  +++  + +
Sbjct: 73  RHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLISGVSY 130
Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
            H M + +RDLK EN L+                            D SP     +   C
Sbjct: 131 CHAMQVCHRDLKLENTLL----------------------------DGSPAP---RLKIC 159
Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
           A     FG S            S LH + +        GTP  +A               
Sbjct: 160 A-----FGYSKS----------SVLHSQPK-----STVGTPAYIA--------------- 184
Query: 324 YLAPEI-ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE----FP 378
              PE+ +  E  G   D W+ G+ ++ +  G  PF+  +        + R L      P
Sbjct: 185 ---PEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIP 241
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               +    + LI+++ V DP +R    +    I+ H++F
Sbjct: 242 DYVHISPECRHLISRIFVADPAKR----ISIPEIRNHEWF 277

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 111/313 (35%), Gaps = 78/313 (24%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G     + +      ++    FA K++ K  L+  ++  +  +E  I   L H  + 
Sbjct: 49  LGKGGFAKCFEIS----DADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 104
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
             +   +   +  ++ E C    L  L +R+  K   E   R+Y  ++V+  ++LH   +
Sbjct: 105 GFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRV 162
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           I+RDLK  N+ +  D  + + DF L+ K +      +++                     
Sbjct: 163 IHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL--------------------- 201
Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
                C  PN I P V                                            
Sbjct: 202 -----CGTPNYIAPEV-------------------------------------------- 212
Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
           +S +GH   VD W++G  ++ L  G  PF+    + T   +       PK   +   A  
Sbjct: 213 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKH--INPVAAS 270
Query: 390 LIAQLLVKDPTRR 402
           LI ++L  DPT R
Sbjct: 271 LIQKMLQTDPTAR 283

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ + + +F +
Sbjct: 180 GTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDE 239
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRM 403
           E        AKD I +LLVK+  +R+
Sbjct: 240 EFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
              V  +G+G  G VY    K +    G   A KVMD    V+ ++E   + E  +L+  
Sbjct: 26  FELVELVGNGTYGQVY----KGRHVKTGQLAAIKVMD----VTGDEEEEIKQEINMLKKY 77
Query: 144 DHPF-LPTLYAT--------LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
            H   + T Y          +D   W  L+ EFC  G +  L +        E  + +  
Sbjct: 78  SHHRNIATYYGAFIKKNPPGMDDQLW--LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYIC 135
Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
            E++  L  LH   +I+RD+K +NVL+  +  + L DF +S + D + 
Sbjct: 136 REILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTV 183

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 111/313 (35%), Gaps = 78/313 (24%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G     + +      ++    FA K++ K  L+  ++  +  +E  I   L H  + 
Sbjct: 47  LGKGGFAKCFEIS----DADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 102
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
             +   +   +  ++ E C    L  L +R+  K   E   R+Y  ++V+  ++LH   +
Sbjct: 103 GFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRV 160
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           I+RDLK  N+ +  D  + + DF L+ K +      +++                     
Sbjct: 161 IHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL--------------------- 199
Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
                C  PN I P V                                            
Sbjct: 200 -----CGTPNYIAPEV-------------------------------------------- 210
Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
           +S +GH   VD W++G  ++ L  G  PF+    + T   +       PK   +   A  
Sbjct: 211 LSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKH--INPVAAS 268
Query: 390 LIAQLLVKDPTRR 402
           LI ++L  DPT R
Sbjct: 269 LIQKMLQTDPTAR 281

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
           F+  LGSG    V+LV    K    G  FA K + K       ++S    E  +L+ + H
Sbjct: 13  FMEVLGSGAFSEVFLV----KQRLTGKLFALKCIKKSPAF---RDSSLENEIAVLKKIKH 65
Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
             + TL    +      L+ +   GG+L    +      + E        +V+ A+++LH
Sbjct: 66  ENIVTLEDIYESTTHYYLVMQLVSGGEL--FDRILERGVYTEKDASLVIQQVLSAVKYLH 123
Query: 206 MMGIIYRDLKPENVLV---RSDGHIMLTDFDLSLKGDNSTSTAQLVS--DQSPPTGDQQP 260
             GI++RDLKPEN+L      +  IM+TDF LS    N   +    +    +P    Q+P
Sbjct: 124 ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKP 183
Query: 261 NDCAVDQPPFGNSSCII 277
              AVD    G  + I+
Sbjct: 184 YSKAVDCWSIGVITYIL 200

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF           +     EF  
Sbjct: 169 GTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFES 228
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRR 402
           P    +   AKD I  LL KDP  R
Sbjct: 229 PFWDDISESAKDFICHLLEKDPNER 253

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V   +  GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ +
Sbjct: 173 VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITS 232
Query: 373 RALEFPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
            + +F +E        AKD I +LLVK+  +R+
Sbjct: 233 VSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           V   +  GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ +
Sbjct: 173 VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITS 232
Query: 373 RALEFPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
            + +F +E        AKD I +LLVK+  +R+
Sbjct: 233 VSYDFDEEFFSHTSELAKDFIRKLLVKETRKRL 265

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 80/314 (25%)
Query: 90  LGSGDIGSVY-LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G     Y +  + +K       FA KV+ K  L+  +++ +   E  I + LD+P +
Sbjct: 50  LGKGGFAKCYEITDMDTKE-----VFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHV 104
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              +   +   +  ++ E C    L  L +R+  K   E   R++  + +  +++LH   
Sbjct: 105 VGFHGFFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQP 268
           +I+RDLK  N+ +  D  + + DF L+ K +                G+++ + C     
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD--------------GERKKDLCGT--- 205
Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
                    PN I P V C                                         
Sbjct: 206 ---------PNYIAPEVLC----------------------------------------- 215
Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
               +GH   VD W+LG  ++ L  G  PF+    + T   +       P+   +   A 
Sbjct: 216 ---KKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVPRH--INPVAS 270
Query: 389 DLIAQLLVKDPTRR 402
            LI ++L  DPT R
Sbjct: 271 ALIRRMLHADPTLR 284

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 133/342 (38%), Gaps = 85/342 (24%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           SD   +  LG G  G V    +K++++ +  ++A K +   E     K S    E  +L 
Sbjct: 6   SDFEEIAVLGQGAFGQV----VKARNALDSRYYAIKKIRHTE----EKLSTILSEVMLLA 57
Query: 142 MLDHPFLPTLYAT-----------LDCPRWSCLLT--EFCPGGDLHVLRQRQPDKRFHES 188
            L+H ++   YA                + S L    E+C    L+ L   +   +  + 
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDE 117
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
             R +  +++ AL ++H  GII+RDLKP N+ +    ++ + DF L+     S    +L 
Sbjct: 118 YWRLF-RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA 308
           S   P + D               +S I                         GT   VA
Sbjct: 177 SQNLPGSSDNL-------------TSAI-------------------------GTAMYVA 198
Query: 309 EPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFK-GIDHELT 366
                              E++ G GH N  +D ++LGI  FE+ Y   PF  G++    
Sbjct: 199 ------------------TEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNI 237
Query: 367 LANVVARALEFP--KEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
           L  + + ++EFP   + +     K +I  L+  DP +R G++
Sbjct: 238 LKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+++ +LG G+ GSV L +      N G   A K +        +++   + E +IL+ L
Sbjct: 9   LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS---GPDQQRDFQREIQILKAL 65
Query: 144 DHPFLPTLYATLDCPRWS--CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              F+         P      L+ E+ P G L    QR    R   S +  Y+S++   +
Sbjct: 66  HSDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRH-RARLDASRLLLYSSQICKGM 124
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N+LV S+ H+ + DF L+
Sbjct: 125 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 158

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 80/314 (25%)
Query: 90  LGSGDIGSVY-LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G     Y +  + +K       FA KV+ K  L+  +++ +   E  I + LD+P +
Sbjct: 34  LGKGGFAKCYEITDMDTKE-----VFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHV 88
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              +   +   +  ++ E C    L  L +R+  K   E   R++  + +  +++LH   
Sbjct: 89  VGFHGFFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNR 146
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQP 268
           +I+RDLK  N+ +  D  + + DF L+ K +                G+++ + C     
Sbjct: 147 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD--------------GERKKDLCGT--- 189
Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
                    PN I P V C                                         
Sbjct: 190 ---------PNYIAPEVLC----------------------------------------- 199
Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
               +GH   VD W+LG  ++ L  G  PF+    + T   +       P+   +   A 
Sbjct: 200 ---KKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVPRH--INPVAS 254
Query: 389 DLIAQLLVKDPTRR 402
            LI ++L  DPT R
Sbjct: 255 ALIRRMLHADPTLR 268

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 80/314 (25%)
Query: 90  LGSGDIGSVY-LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G     Y +  + +K       FA KV+ K  L+  +++ +   E  I + LD+P +
Sbjct: 50  LGKGGFAKCYEITDMDTKE-----VFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHV 104
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              +   +   +  ++ E C    L  L +R+  K   E   R++  + +  +++LH   
Sbjct: 105 VGFHGFFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQP 268
           +I+RDLK  N+ +  D  + + DF L+ K +                G+++   C     
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD--------------GERKKTLCGT--- 205
Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
                    PN I P V C                                         
Sbjct: 206 ---------PNYIAPEVLC----------------------------------------- 215
Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
               +GH   VD W+LG  ++ L  G  PF+    + T   +       P+   +   A 
Sbjct: 216 ---KKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVPRH--INPVAS 270
Query: 389 DLIAQLLVKDPTRR 402
            LI ++L  DPT R
Sbjct: 271 ALIRRMLHADPTLR 284

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 68/272 (25%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           SDL     LG G  G    V  +            +VM  +EL+  ++E++    +E+  
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRE---------TGEVMVMKELIRFDEETQRTFLKEVKV 60
Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           M  L+HP +      L   +    +TE+  GG L  +  +  D ++  S    +A ++  
Sbjct: 61  MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGI-IKSMDSQYPWSQRVSFAKDIAS 119
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQ 259
            + +LH M II+RDL   N LVR + ++++ DF L          A+L+ D+        
Sbjct: 120 GMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGL----------ARLMVDEK------- 162
Query: 260 PNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV 319
                    P G  S   P+           +++R   +GNP                  
Sbjct: 163 -------TQPEGLRSLKKPD-----------RKKRYTVVGNP------------------ 186
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL 351
               ++APE+I+G  +   VD ++ GI + E+
Sbjct: 187 ---YWMAPEMINGRSYDEKVDVFSFGIVLCEI 215

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 126/340 (37%), Gaps = 92/340 (27%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--L 143
            V  +G+G+ G   L  ++ K +N     A K +++ E +  N      ++REI+    L
Sbjct: 23  LVKDIGAGNFGVARL--MRDKQANE--LVAVKYIERGEKIDEN------VKREIINHRSL 72
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            HP +      +  P    ++ E+  GG+L    +     RF E   RF+  +++  + +
Sbjct: 73  RHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLISGVSY 130
Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
            H M + +RDLK EN L+                 D S +    ++D             
Sbjct: 131 AHAMQVAHRDLKLENTLL-----------------DGSPAPRLKIAD------------- 160
Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
                 FG S            S LH + +        GTP  +A               
Sbjct: 161 ------FGYSKA----------SVLHSQPK-----SAVGTPAYIA--------------- 184
Query: 324 YLAPEI-ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE----FP 378
              PE+ +  E  G   D W+ G+ ++ +  G  PF+  +        + R L      P
Sbjct: 185 ---PEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYAIP 241
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               +    + LI+++ V DP +R    +    I+ H++F
Sbjct: 242 DYVHISPECRHLISRIFVADPAKR----ISIPEIRNHEWF 277

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 80/314 (25%)
Query: 90  LGSGDIGSVY-LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G     Y +  + +K       FA KV+ K  L+  +++ +   E  I + LD+P +
Sbjct: 50  LGKGGFAKCYEITDMDTKE-----VFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHV 104
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              +   +   +  ++ E C    L  L +R+  K   E   R++  + +  +++LH   
Sbjct: 105 VGFHGFFEDDDFVYVVLEICRRRSLLELHKRR--KAVTEPEARYFMRQTIQGVQYLHNNR 162
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQP 268
           +I+RDLK  N+ +  D  + + DF L+ K +                G+++   C     
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD--------------GERKKXLCGT--- 205
Query: 269 PFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
                    PN I P V C                                         
Sbjct: 206 ---------PNYIAPEVLC----------------------------------------- 215
Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
               +GH   VD W+LG  ++ L  G  PF+    + T   +       P+   +   A 
Sbjct: 216 ---KKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSVPRH--INPVAS 270
Query: 389 DLIAQLLVKDPTRR 402
            LI ++L  DPT R
Sbjct: 271 ALIRRMLHADPTLR 284

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 109/302 (36%), Gaps = 101/302 (33%)
Query: 163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           L+ E   GG   +L      + F+E        +V  AL+FLH  GI +RDLKPEN+L  
Sbjct: 88  LVFEKMRGGS--ILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCE 145
Query: 223 SDGHI---MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPN 279
               +    + DF L        S  +L  D SP +                        
Sbjct: 146 HPNQVSPVKICDFGLG-------SGIKLNGDCSPIS------------------------ 174
Query: 280 CIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAV 339
                                  TPE+         ++  G+ EY+APE++       ++
Sbjct: 175 -----------------------TPEL---------LTPCGSAEYMAPEVVEAFSEEASI 202
Query: 340 -----DWWTLGIFIFELFYGTTPFKG---------------IDHELTLANVVARALEFPK 379
                D W+LG+ ++ L  G  PF G                   +   ++     EFP 
Sbjct: 203 YDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPD 262
Query: 380 E--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
           +    +   AKDLI++LLV+D  +R    + A  + +H +  G       CA    +P P
Sbjct: 263 KDWAHISCAAKDLISKLLVRDAKQR----LSAAQVLQHPWVQG-------CAPENTLPTP 311
Query: 438 VT 439
           + 
Sbjct: 312 MV 313

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 131/338 (38%), Gaps = 73/338 (21%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK-VMDKRELVSRNKESRARIERE 138
            L     V +LG G  G V+    KS     G   A K + D      +N     R  RE
Sbjct: 7   VLRKYELVKKLGKGAYGIVW----KSIDRRTGEVVAVKKIFD----AFQNSTDAQRTFRE 58
Query: 139 IL---EMLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
           I+   E+  H  +  L   L  D  R   L+ ++    DLH + +    +  H+  V + 
Sbjct: 59  IMILTELSGHENIVNLLNVLRADNDRDVYLVFDYMET-DLHAVIRANILEPVHKQYVVY- 116
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
             +++  +++LH  G+++RD+KP N+L+ ++ H+ + DF LS     S    + V++  P
Sbjct: 117 --QLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLS----RSFVNIRRVTNNIP 170
Query: 254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV 313
            + ++   +   DQP   +                                         
Sbjct: 171 LSINENTENFDDDQPILTD----------------------------------------- 189
Query: 314 RSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
               +V T  Y APEI+ G   +   +D W+LG  + E+  G   F G      L  ++ 
Sbjct: 190 ----YVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIG 245
Query: 373 RALEFPKE---PSVPGP-AKDLIAQLLVKDPTRRMGSK 406
             ++FP      S+  P AK +I  L  K   R+   +
Sbjct: 246 -VIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKR 282

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 128/340 (37%), Gaps = 92/340 (27%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL--EML 143
           FV  +GSG+ G   L++ K          A K +++   +  N      ++REI+    L
Sbjct: 24  FVKDIGSGNFGVARLMRDKLTKE----LVAVKYIERGAAIDEN------VQREIINHRSL 73
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDK-RFHESAVRFYASEVVVALE 202
            HP +      +  P    ++ E+  GG+L+   +R  +  RF E   RF+  +++  + 
Sbjct: 74  RHPNIVRFKEVILTPTHLAIIMEYASGGELY---ERICNAGRFSEDEARFFFQQLLSGVS 130
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           + H M I +RDLK EN L+                 D S +    + D            
Sbjct: 131 YCHSMQICHRDLKLENTLL-----------------DGSPAPRLKICD------------ 161
Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
                  FG S            S LH + +        GTP  +A  + +R        
Sbjct: 162 -------FGYSKS----------SVLHSQPK-----STVGTPAYIAPEVLLR-------Q 192
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLANVVARALEFP 378
           EY           G   D W+ G+ ++ +  G  PF+      D+  T+  +++     P
Sbjct: 193 EY----------DGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIP 242
Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            +  +      LI+++ V DP     +++    IK H +F
Sbjct: 243 DDIRISPECCHLISRIFVADP----ATRISIPEIKTHSWF 278

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLTE 166
             G  FA K++D  +  S    S   ++RE  I  ML HP +  L  T        ++ E
Sbjct: 47  ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFE 106
Query: 167 FCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
           F  G DL   ++++      + E+    Y  +++ AL + H   II+RD+KPENVL+ S 
Sbjct: 107 FMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPENVLLASK 166
Query: 225 GH---IMLTDFDLSLKGDNSTSTA 245
            +   + L DF ++++   S   A
Sbjct: 167 ENSAPVKLGDFGVAIQLGESGLVA 190

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KLG+ G    + E   + +   VGT  ++APE++  E +G  VD W  G+ +F L  G  
Sbjct: 173 KLGDFGVAIQLGES-GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCL 231
Query: 357 PFKGIDHELTLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRM 403
           PF G    L    +  +    P++ S +   AKDL+ ++L+ DP  R+
Sbjct: 232 PFYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERI 279

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V   +  +  I   I 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAVDCPENIKKEIX--IN 58
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++  
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAG 116
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 117 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V   +  +  I   I 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAVDCPENIKKEIX--IN 59
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++  
Sbjct: 60  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAG 117
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 118 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V   +  +  I   I 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAVDCPENIKKEIX--IN 58
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++  
Sbjct: 59  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLMAG 116
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 117 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 55
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 56  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 113
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 114 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 150

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 131/342 (38%), Gaps = 85/342 (24%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           SD   +  LG G  G V    +K++++ +  ++A K +   E     K S    E  +L 
Sbjct: 6   SDFEEIAVLGQGAFGQV----VKARNALDSRYYAIKKIRHTE----EKLSTILSEVXLLA 57
Query: 142 MLDHPFLPTLYAT-----------LDCPRWSCLLT--EFCPGGDLHVLRQRQPDKRFHES 188
            L+H ++   YA                + S L    E+C    L+ L   +   +  + 
Sbjct: 58  SLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQRDE 117
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV 248
             R +  +++ AL ++H  GII+R+LKP N+ +    ++ + DF L+     S    +L 
Sbjct: 118 YWRLF-RQILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLD 176
Query: 249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA 308
           S   P + D                       +  A+                GT   VA
Sbjct: 177 SQNLPGSSDN----------------------LTSAI----------------GTAXYVA 198
Query: 309 EPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFK-GIDHELT 366
                              E++ G GH N  +D ++LGI  FE  Y   PF  G +    
Sbjct: 199 ------------------TEVLDGTGHYNEKIDXYSLGIIFFEXIY---PFSTGXERVNI 237
Query: 367 LANVVARALEFP--KEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
           L  + + ++EFP   + +     K +I  L+  DP +R G++
Sbjct: 238 LKKLRSVSIEFPPDFDDNKXKVEKKIIRLLIDHDPNKRPGAR 279

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR-FHESAV 190
           R + E EI++ LDHP +  LY T +      L+ E C GG+L    +R   KR F ES  
Sbjct: 69  RFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELF---ERVVHKRVFRESDA 125
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLK 237
                +V+ A+ + H + + +RDLKPEN L  +   D  + L DF L+ +
Sbjct: 126 ARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 175

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y++P+++ G  +G   D W+ G+ ++ L  G  PF        +  +      FP
Sbjct: 186 VGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFP 244
Query: 379 KEP--SVPGPAKDLIAQLLVKDPTRRMGS 405
           ++   +V   A+ LI +LL K P +R+ S
Sbjct: 245 EKDWLNVSPQAESLIRRLLTKSPKQRITS 273

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR-FHESAV 190
           R + E EI++ LDHP +  LY T +      L+ E C GG+L    +R   KR F ES  
Sbjct: 52  RFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELF---ERVVHKRVFRESDA 108
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLK 237
                +V+ A+ + H + + +RDLKPEN L  +   D  + L DF L+ +
Sbjct: 109 ARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR 158

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           VGT  Y++P+++ G  +G   D W+ G+ ++ L  G  PF        +  +      FP
Sbjct: 169 VGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXEVMLKIREGTFTFP 227
Query: 379 KEP--SVPGPAKDLIAQLLVKDPTRRMGS 405
           ++   +V   A+ LI +LL K P +R+ S
Sbjct: 228 EKDWLNVSPQAESLIRRLLTKSPKQRITS 256

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAAGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 5   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 56
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
             +ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 57  INKMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 114
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D R V  LG+G    V L + K          A K + K+ L    KE     E  +L
Sbjct: 19  IYDFRDV--LGTGAFSEVILAEDKRTQK----LVAIKCIAKKAL--EGKEGSMENEIAVL 70
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH-ESAVRFYASEVVV 199
             + HP +  L    +      L+ +   GG+L     R  +K F+ E        +V+ 
Sbjct: 71  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELF---DRIVEKGFYTERDASRLIFQVLD 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSD---QSP 253
           A+++LH +GI++RDLKPEN+L  S   D  IM++DF LS   D  +  +         +P
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAP 187
Query: 254 PTGDQQPNDCAVDQPPFGNSSCII 277
               Q+P   AVD    G  + I+
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYIL 211

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF   +       ++    EF  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDS 239
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           P    +   AKD I  L+ KDP +R 
Sbjct: 240 PYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           TL++ R   ++G G    VY    ++    +G   A K +   +L+     +    E ++
Sbjct: 30  TLANFRIEKKIGRGQFSEVY----RAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDL 85
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFH-ESAVRFYASEV 197
           L+ L+HP +   YA+        ++ E    GDL  +++  +  KR   E  V  Y  ++
Sbjct: 86  LKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL 145
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
             ALE +H   +++RD+KP NV + + G + L D  L     + T+ A 
Sbjct: 146 CSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH 194

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 26/171 (15%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           FA K++DK +   R+      I   +L    HP + TL    D  ++  ++TE   GG+L
Sbjct: 50  FAVKIIDKSK---RDPTEEIEI---LLRYGQHPNIITLKDVYDDGKYVYVVTELXKGGEL 103
Query: 174 --HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL-VRSDGH---I 227
              +LRQ+   +R   SAV F  ++ V   E+LH  G+++RDLKP N+L V   G+   I
Sbjct: 104 LDKILRQKFFSER-EASAVLFTITKTV---EYLHAQGVVHRDLKPSNILYVDESGNPESI 159
Query: 228 MLTDFDLS--LKGDNST-----STAQLVSDQSPPTGDQQPNDCAVDQPPFG 271
            + DF  +  L+ +N        TA  V   +P   ++Q  D A D    G
Sbjct: 160 RICDFGFAKQLRAENGLLXTPCYTANFV---APEVLERQGYDAACDIWSLG 207

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF-KGIDHELTLANVVAR------ 373
           T  ++APE++  +G+  A D W+LG+ ++    G TPF  G D   T   ++AR      
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTPFANGPDD--TPEEILARIGSGKF 240
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL 426
           +L      SV   AKDL+++ L  DP +R+ + +    + RH +   V+W  L
Sbjct: 241 SLSGGYWNSVSDTAKDLVSKXLHVDPHQRLTAAL----VLRHPWI--VHWDQL 287

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 26/171 (15%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           FA K++DK +   R+      I   +L    HP + TL    D  ++  ++TE   GG+L
Sbjct: 50  FAVKIIDKSK---RDPTEEIEI---LLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGEL 103
Query: 174 --HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL-VRSDGH---I 227
              +LRQ+   +R   SAV F  ++ V   E+LH  G+++RDLKP N+L V   G+   I
Sbjct: 104 LDKILRQKFFSER-EASAVLFTITKTV---EYLHAQGVVHRDLKPSNILYVDESGNPESI 159
Query: 228 MLTDFDLS--LKGDNST-----STAQLVSDQSPPTGDQQPNDCAVDQPPFG 271
            + DF  +  L+ +N        TA  V   +P   ++Q  D A D    G
Sbjct: 160 RICDFGFAKQLRAENGLLMTPCYTANFV---APEVLERQGYDAACDIWSLG 207

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF-KGIDHELTLANVVAR------ 373
           T  ++APE++  +G+  A D W+LG+ ++ +  G TPF  G D   T   ++AR      
Sbjct: 183 TANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILARIGSGKF 240
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
           +L      SV   AKDL++++L  DP +R    + A  + RH +   V+W
Sbjct: 241 SLSGGYWNSVSDTAKDLVSKMLHVDPHQR----LTAALVLRHPWI--VHW 284

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V    +    I++EI 
Sbjct: 6   VEDWDLVQTLGEGAYGEVQLAVNRVTEEA----VAVKIVDMKRAV----DCPENIKKEIC 57
Query: 141 --EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
              ML+H  +   Y          L  E+C GG+L    + +PD    E   + +  +++
Sbjct: 58  INAMLNHENVVKFYGHRREGNIQYLFLEYCSGGEL--FDRIEPDIGMPEPDAQRFFHQLM 115
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH +GI +RD+KPEN+L+    ++ ++DF L+
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM----DKRELVSRNKESRARIEREILEM 142
           + +LG G  GSVY    K+     G   A K +    D +E++          E  I++ 
Sbjct: 34  LEKLGEGSYGSVY----KAIHKETGQIVAIKQVPVESDLQEIIK---------EISIMQQ 80
Query: 143 LDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVV 199
            D P +   Y +   +   W  ++ E+C  G +  ++R R  +K   E  +       + 
Sbjct: 81  CDSPHVVKYYGSYFKNTDLW--IVMEYCGAGSVSDIIRLR--NKTLTEDEIATILQSTLK 136
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            LE+LH M  I+RD+K  N+L+ ++GH  L DF ++
Sbjct: 137 GLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
            T E+ APEI+  E  G   D W +G+  + L  G +PF G D   TL NV     EF +
Sbjct: 212 ATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDE 271
Query: 380 EP--SVPGPAKDLIAQLLVKDPTRRM 403
           +   SV   AKD I  LL K+P +R+
Sbjct: 272 DAFSSVSPEAKDFIKNLLQKEPRKRL 297

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G V+    K + +  G   AAK++  R +  ++KE   + E  ++  LDH  L 
Sbjct: 97  LGGGRFGQVH----KCEETATGLKLAAKIIKTRGM--KDKE-EVKNEISVMNQLDHANLI 149
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYASEVVVALEFLHMM 207
            LY   +      L+ E+  GG+L     R  D+ ++  E     +  ++   +  +H M
Sbjct: 150 QLYDAFESKNDIVLVMEYVDGGELF---DRIIDESYNLTELDTILFMKQICEGIRHMHQM 206
Query: 208 GIIYRDLKPENVLV--RSDGHIMLTDFDLS 235
            I++ DLKPEN+L   R    I + DF L+
Sbjct: 207 YILHLDLKPENILCVNRDAKQIKIIDFGLA 236

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT E+LAPE+++ +      D W++G+  + L  G +PF G +   TL N++A   +   
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLED 309
Query: 380 EP--SVPGPAKDLIAQLLVKDPTRRMGS 405
           E    +   AK+ I++LL+K+ + R+ +
Sbjct: 310 EEFQDISEEAKEFISKLLIKEKSWRISA 337

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
           F   LG+G    V L + K          A K + K  L    KE     E  +L  + H
Sbjct: 22  FRDVLGTGAFSEVILAEDKRTQK----LVAIKCIAKEAL--EGKEGSMENEIAVLHKIKH 75
Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH-ESAVRFYASEVVVALEFL 204
           P +  L    +      L+ +   GG+L     R  +K F+ E        +V+ A+++L
Sbjct: 76  PNIVALDDIYESGGHLYLIMQLVSGGELF---DRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSD---QSPPTGDQ 258
           H +GI++RDLKPEN+L  S   D  IM++DF LS   D  +  +         +P    Q
Sbjct: 133 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 192
Query: 259 QPNDCAVDQPPFGNSSCII 277
           +P   AVD    G  + I+
Sbjct: 193 KPYSKAVDCWSIGVIAYIL 211

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF   +       ++    EF  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDS 239
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           P    +   AKD I  L+ KDP +R 
Sbjct: 240 PYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
           F   LG+G    V L + K          A K + K  L    KE     E  +L  + H
Sbjct: 22  FRDVLGTGAFSEVILAEDKRTQK----LVAIKCIAKEAL--EGKEGSMENEIAVLHKIKH 75
Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH-ESAVRFYASEVVVALEFL 204
           P +  L    +      L+ +   GG+L     R  +K F+ E        +V+ A+++L
Sbjct: 76  PNIVALDDIYESGGHLYLIMQLVSGGELF---DRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSD---QSPPTGDQ 258
           H +GI++RDLKPEN+L  S   D  IM++DF LS   D  +  +         +P    Q
Sbjct: 133 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 192
Query: 259 QPNDCAVDQPPFGNSSCII 277
           +P   AVD    G  + I+
Sbjct: 193 KPYSKAVDCWSIGVIAYIL 211

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF   +       ++    EF  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDS 239
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           P    +   AKD I  L+ KDP +R 
Sbjct: 240 PYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 18/204 (8%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D R V  LG+G    V L + K          A K + K  L    KE     E  +L
Sbjct: 19  IYDFRDV--LGTGAFSEVILAEDKRTQK----LVAIKCIAKEAL--EGKEGSMENEIAVL 70
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH-ESAVRFYASEVVV 199
             + HP +  L    +      L+ +   GG+L     R  +K F+ E        +V+ 
Sbjct: 71  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELF---DRIVEKGFYTERDASRLIFQVLD 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSD---QSP 253
           A+++LH +GI++RDLKPEN+L  S   D  IM++DF LS   D  +  +         +P
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAP 187
Query: 254 PTGDQQPNDCAVDQPPFGNSSCII 277
               Q+P   AVD    G  + I+
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYIL 211

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-- 377
           GT  Y+APE+++ + +  AVD W++G+  + L  G  PF   +       ++    EF  
Sbjct: 180 GTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDS 239
Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           P    +   AKD I  L+ KDP +R 
Sbjct: 240 PYWDDISDSAKDFIRHLMEKDPEKRF 265

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V L    ++  ++G   A K+MD R+     ++ R  +  E++ M D  H 
Sbjct: 52  KIGEGSTGIVCL----AREKHSGRQVAVKMMDLRK-----QQRRELLFNEVVIMRDYQHF 102
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        +L EF  GG L  +  +    R +E  +      V+ AL +LH 
Sbjct: 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHA 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 160 QGVIHRDIKSDSILLTLDGRVKLSDF 185

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
            VGT  ++APE+IS   +   VD W+LGI + E+  G  P+       +    + R  + 
Sbjct: 201 LVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPY----FSDSPVQAMKRLRDS 256
Query: 378 P-----KEPSVPGPAKDLIAQLLVKDPTRR 402
           P         V    +D + ++LV+DP  R
Sbjct: 257 PPPKLKNSHKVSPVLRDFLERMLVRDPQER 286

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
             F GT  YL+PE++  + +G  VD W  G+ ++ L  G  PF   D       + A A 
Sbjct: 191 FGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAY 250
Query: 376 EF--PKEPSVPGPAKDLIAQLLVKDPTRRM 403
           +F  P+  +V   AK+LI Q+L  +P +R+
Sbjct: 251 DFPSPEWDTVTPEAKNLINQMLTINPAKRI 280

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAK-VMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG+G  G V+ V  ++  +N    FAAK VM   E    +KE+  R E + + +L HP L
Sbjct: 165 LGTGAFGVVHRVTERATGNN----FAAKFVMTPHE---SDKET-VRKEIQTMSVLRHPTL 216
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+   +      ++ EF  GG+L      + +K   + AV  Y  +V   L  +H   
Sbjct: 217 VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVE-YMRQVCKGLCHMHENN 275
Query: 209 IIYRDLKPENVL--VRSDGHIMLTDFDLSLKGD------NSTSTAQLVSDQSPPTGDQQP 260
            ++ DLKPEN++   +    + L DF L+   D       +T TA+     +P   + +P
Sbjct: 276 YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA---APEVAEGKP 332
Query: 261 NDCAVDQPPFGNSSCIIPNCIVP 283
                D    G  S I+ + + P
Sbjct: 333 VGYYTDMWSVGVLSYILLSGLSP 355

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
            GT E+ APE+  G+  G   D W++G+  + L  G +PF G + + TL NV  ++ ++ 
Sbjct: 317 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNV--KSCDWN 374
Query: 379 KEPS----VPGPAKDLIAQLLVKDPTRRM 403
            + S    +    KD I +LL+ DP  RM
Sbjct: 375 MDDSAFSGISEDGKDFIRKLLLADPNTRM 403

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 15  LKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 69
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ EF P G L    Q+  ++  H   ++ Y S++  
Sbjct: 70  SLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQ-YTSQICK 128
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 129 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 111 GCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPG 170
           G  FAAK+++ ++L +R+ +   R E  I   L HP +  L+ ++    +  L+ +   G
Sbjct: 54  GLEFAAKIINTKKLSARDFQKLER-EARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG 112
Query: 171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---I 227
           G+L         + + E+       +++ ++ + H  GI++R+LKPEN+L+ S      +
Sbjct: 113 GEL--FEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAV 170
Query: 228 MLTDFDLSLKGDNSTS 243
            L DF L+++ ++S +
Sbjct: 171 KLADFGLAIEVNDSEA 186

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 249
Query: 378 --PKEPSVPGPAKDLIAQLLVKDPTRRM 403
             P+  +V   AK LI  +L  +P +R+
Sbjct: 250 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 277

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAK-VMDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG+G  G V+ V  ++  +N    FAAK VM   E    +KE+  R E + + +L HP L
Sbjct: 59  LGTGAFGVVHRVTERATGNN----FAAKFVMTPHE---SDKET-VRKEIQTMSVLRHPTL 110
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
             L+   +      ++ EF  GG+L      + +K   + AV  Y  +V   L  +H   
Sbjct: 111 VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVE-YMRQVCKGLCHMHENN 169
Query: 209 IIYRDLKPENVL--VRSDGHIMLTDFDLSLKGD------NSTSTAQLVSDQSPPTGDQQP 260
            ++ DLKPEN++   +    + L DF L+   D       +T TA+     +P   + +P
Sbjct: 170 YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA---APEVAEGKP 226
Query: 261 NDCAVDQPPFGNSSCIIPNCIVP 283
                D    G  S I+ + + P
Sbjct: 227 VGYYTDMWSVGVLSYILLSGLSP 249

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
            GT E+ APE+  G+  G   D W++G+  + L  G +PF G + + TL NV  ++ ++ 
Sbjct: 211 TGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNV--KSCDWN 268
Query: 379 KEPS----VPGPAKDLIAQLLVKDPTRRM 403
            + S    +    KD I +LL+ DP  RM
Sbjct: 269 MDDSAFSGISEDGKDFIRKLLLADPNTRM 297

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
             G  FAAK+++ ++L +R+ +   R E  I   L HP +  L+ ++    +  L+ +  
Sbjct: 29  TTGLEFAAKIINTKKLSARDFQKLER-EARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 87
Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-- 226
            GG+L         + + E+       +++ ++ + H  GI++R+LKPEN+L+ S     
Sbjct: 88  TGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA 145
Query: 227 -IMLTDFDLSLKGDNSTS 243
            + L DF L+++ ++S +
Sbjct: 146 AVKLADFGLAIEVNDSEA 163

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 378 --PKEPSVPGPAKDLIAQLLVKDPTRRM 403
             P+  +V   AK LI  +L  +P +R+
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 111/313 (35%), Gaps = 78/313 (24%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G     + +      ++    FA K++ K  L+  ++  +  +E  I   L H  + 
Sbjct: 29  LGKGGFAKCFEIS----DADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 84
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
             +   +   +  ++ E C    L  L +R+  K   E   R+Y  ++V+  ++LH   +
Sbjct: 85  GFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRV 142
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           I+RDLK  N+ +  D  + + DF L+ K +                G+++   C      
Sbjct: 143 IHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD--------------GERKKTLCGT---- 184
Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
                   PN I P V                         L  +  SF           
Sbjct: 185 --------PNYIAPEV-------------------------LSKKGHSF----------- 200
Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
                    VD W++G  ++ L  G  PF+    + T   +       PK   +   A  
Sbjct: 201 --------EVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKH--INPVAAS 250
Query: 390 LIAQLLVKDPTRR 402
           LI ++L  DPT R
Sbjct: 251 LIQKMLQTDPTAR 263

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
             G  FAAK+++ ++L +R+ +   R E  I   L HP +  L+ ++    +  L+ +  
Sbjct: 29  TTGLEFAAKIINTKKLSARDFQKLER-EARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 87
Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-- 226
            GG+L         + + E+       +++ ++ + H  GI++R+LKPEN+L+ S     
Sbjct: 88  TGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA 145
Query: 227 -IMLTDFDLSLKGDNSTS 243
            + L DF L+++ ++S +
Sbjct: 146 AVKLADFGLAIEVNDSEA 163

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226
Query: 378 --PKEPSVPGPAKDLIAQLLVKDPTRRM 403
             P+  +V   AK LI  +L  +P +R+
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSS-NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-- 143
           +++L S  +G     +++   S  NG  +A K+++K+        SR+R+ RE+  +   
Sbjct: 13  MYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQ-----AGHSRSRVFREVETLYQC 67
Query: 144 --DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             +   L  +    D  R+  L+ E   GG   +L   Q  K F+E        +V  AL
Sbjct: 68  QGNKNILELIEFFEDDTRFY-LVFEKLQGGS--ILAHIQKQKHFNEREASRVVRDVAAAL 124
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFDL--SLKGDNSTS 243
           +FLH  GI +RDLKPEN+L  S      + + DFDL   +K +NS +
Sbjct: 125 DFLHTKGIAHRDLKPENILCESPEKVSPVKICDFDLGSGMKLNNSCT 171

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 320 GTHEYLAPEII-----SGEGHGNAVDWWTLGIFIFELFYGTTPFKG-------------- 360
           G+ EY+APE++         +    D W+LG+ ++ +  G  PF G              
Sbjct: 183 GSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVGHCGADCGWDRGEVC 242
Query: 361 -IDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
            +       ++     EFP +    +   AKDLI++LLV+D  +R    + A  + +H +
Sbjct: 243 RVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISKLLVRDAKQR----LSAAQVLQHPW 298
Query: 418 FNG 420
             G
Sbjct: 299 VQG 301

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
             G  FAAK+++ ++L +R+ +   R E  I   L HP +  L+ ++    +  L+ +  
Sbjct: 28  TTGLEFAAKIINTKKLSARDFQKLER-EARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 86
Query: 169 PGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-- 226
            GG+L         + + E+       +++ ++ + H  GI++R+LKPEN+L+ S     
Sbjct: 87  TGGEL--FEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGA 144
Query: 227 -IMLTDFDLSLKGDNSTS 243
            + L DF L+++ ++S +
Sbjct: 145 AVKLADFGLAIEVNDSEA 162

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 166 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 225
Query: 378 --PKEPSVPGPAKDLIAQLLVKDPTRRM 403
             P+  +V   AK LI  +L  +P +R+
Sbjct: 226 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 253

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 19/145 (13%)
Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            RLG+G  G V    L+    + G   A K   ++EL  +N+E R  +E +I++ L+HP 
Sbjct: 21  ERLGTGGFGYV----LRWIHQDTGEQVAIKQC-RQELSPKNRE-RWCLEIQIMKKLNHPN 74
Query: 148 LPTL---------YATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
           + +           A  D P    L  E+C GGDL   L Q +      E  +R   S++
Sbjct: 75  VVSAREVPDGLQKLAPNDLP---LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDI 131
Query: 198 VVALEFLHMMGIIYRDLKPENVLVR 222
             AL +LH   II+RDLKPEN++++
Sbjct: 132 SSALRYLHENRIIHRDLKPENIVLQ 156

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
           FVGT +YLAPE++  + +   VD+W+ G   FE   G  PF
Sbjct: 184 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE 380
           T  Y APE+++  G+  + D W+LG+ ++ +  G  PF+  D  LT  + V    +  K 
Sbjct: 172 TLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKG 231
Query: 381 ---------PSVPGPAKDLIAQLLVKDPTRRM 403
                     +V   AKDLI  LL  DP +R+
Sbjct: 232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL 263

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 19/145 (13%)
Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            RLG+G  G V    L+    + G   A K   ++EL  +N+E R  +E +I++ L+HP 
Sbjct: 20  ERLGTGGFGYV----LRWIHQDTGEQVAIKQC-RQELSPKNRE-RWCLEIQIMKKLNHPN 73
Query: 148 LPTL---------YATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
           + +           A  D P    L  E+C GGDL   L Q +      E  +R   S++
Sbjct: 74  VVSAREVPDGLQKLAPNDLP---LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDI 130
Query: 198 VVALEFLHMMGIIYRDLKPENVLVR 222
             AL +LH   II+RDLKPEN++++
Sbjct: 131 SSALRYLHENRIIHRDLKPENIVLQ 155

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
           FVGT +YLAPE++  + +   VD+W+ G   FE   G  PF
Sbjct: 183 FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 12  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 66
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 125
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 126 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 43  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 97
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 98  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 156
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 157 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 192

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 15  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 69
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 70  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 128
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 129 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G VY    K+K S  G   A K + + +       S A  E  +L+ L HP
Sbjct: 26  LEKVGEGTYGVVY----KAKDSQ-GRIVALKRI-RLDAEDEGIPSTAIREISLLKELHHP 79
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + +L   +   R   L+ EF       VL + +      +S ++ Y  +++  +   H 
Sbjct: 80  NIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTG--LQDSQIKIYLYQLLRGVAHCHQ 137
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RDLKP+N+L+ SDG + L DF L+
Sbjct: 138 HRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 19  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 73
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 74  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 132
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 133 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 168

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 17  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 71
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 72  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 130
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 131 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 166

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 12  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 66
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 125
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 126 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 10  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 64
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 65  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 124 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 159

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 18  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 72
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 73  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 131
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 132 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 167

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 11  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 65
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 66  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 125 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 160

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY+   K  S       A K + +  +        A + +EI  
Sbjct: 32  TDITMKHKLGGGQYGEVYVGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 85
Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L    TL+ P +  ++TE+ P G+L    +    +      + + A+++  
Sbjct: 86  --KHPNLVQLLGVCTLEPPFY--IVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISS 141
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 142 AMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHA 189

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G VY    K+K S        ++    E       S A  E  +L+ L HP
Sbjct: 26  LEKVGEGTYGVVY----KAKDSQGRIVALKRIRLDAE--DEGIPSTAIREISLLKELHHP 79
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            + +L   +   R   L+ EF       VL + +      +S ++ Y  +++  +   H 
Sbjct: 80  NIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTG--LQDSQIKIYLYQLLRGVAHCHQ 137
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             I++RDLKP+N+L+ SDG + L DF L+
Sbjct: 138 HRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 12  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 66
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 67  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 125
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 126 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 30  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 84
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 85  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 143
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 144 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 179

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 30  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 84
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 85  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 143
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 144 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 179

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 16  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 70
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 71  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 129
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 130 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 165

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--L 143
            V  +GSG+ G   L  ++ K SN     A K +++ E ++ N      ++REI+    L
Sbjct: 23  LVKDIGSGNFGVARL--MRDKQSNE--LVAVKYIERGEKIAAN------VKREIINHRSL 72
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            HP +      +  P    ++ E+  GG+L    +     RF E   RF+  +++  + +
Sbjct: 73  RHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLISGVSY 130
Query: 204 LHMMGIIYRDLKPENVLV 221
            H M + +RDLK EN L+
Sbjct: 131 CHAMQVCHRDLKLENTLL 148

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 317 SFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           S VGT  Y+APE++   E  G   D W+ G+ ++ +  G  PF+  +        + R L
Sbjct: 175 STVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRIL 234
Query: 376 E----FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
                 P    +    + LI+++ V DP +R    +    I+ H++F
Sbjct: 235 NVQYAIPDYVHISPECRHLISRIFVADPAKR----ISIPEIRNHEWF 277

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--L 143
            V  +GSG+ G   L  ++ K SN     A K +++ E +  N      ++REI+    L
Sbjct: 22  LVKDIGSGNFGVARL--MRDKQSNE--LVAVKYIERGEKIDEN------VKREIINHRSL 71
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            HP +      +  P    ++ E+  GG+L    +     RF E   RF+  +++  + +
Sbjct: 72  RHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLISGVSY 129
Query: 204 LHMMGIIYRDLKPENVLV 221
            H M + +RDLK EN L+
Sbjct: 130 CHAMQVCHRDLKLENTLL 147

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 317 SFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           S VGT  Y+APE++   E  G   D W+ G+ ++ +  G  PF+  +        + R L
Sbjct: 174 STVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRIL 233
Query: 376 E----FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
                 P    +    + LI+++ V DP +R    +    I+ H++F
Sbjct: 234 NVQYAIPDYVHISPECRHLISRIFVADPAKR----ISIPEIRNHEWF 276

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--L 143
            V  +GSG+ G   L  ++ K SN     A K +++ E +  N      ++REI+    L
Sbjct: 23  LVKDIGSGNFGVARL--MRDKQSNE--LVAVKYIERGEKIDEN------VKREIINHRSL 72
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            HP +      +  P    ++ E+  GG+L    +     RF E   RF+  +++  + +
Sbjct: 73  RHPNIVRFKEVILTPTHLAIVMEYASGGEL--FERICNAGRFSEDEARFFFQQLISGVSY 130
Query: 204 LHMMGIIYRDLKPENVLV 221
            H M + +RDLK EN L+
Sbjct: 131 CHAMQVCHRDLKLENTLL 148

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 319 VGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE- 376
           VGT  Y+APE++   E  G   D W+ G+ ++ +  G  PF+  +        + R L  
Sbjct: 177 VGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNV 236
Query: 377 ---FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               P    +    + LI+++ V DP +R    +    I+ H++F
Sbjct: 237 QYAIPDYVHISPECRHLISRIFVADPAKR----ISIPEIRNHEWF 277

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 1   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 55
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 105
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKPEN+L+ ++G I L DF L+
Sbjct: 106 LIKSYLFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 152

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           +A KV+DK +   R+      I   +L    HP + TL    D  +   L+TE   GG+L
Sbjct: 55  YAVKVIDKSK---RDPSEEIEI---LLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGEL 108
Query: 174 --HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL 220
              +LRQ    K F E    F    +   +E+LH  G+++RDLKP N+L
Sbjct: 109 LDKILRQ----KFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNIL 153

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI-----DHELTLANVVARAL 375
           T  ++APE++  +G+    D W+LGI ++ +  G TPF        +  LT        L
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
                 +V   AKDL++++L  DP +R+ +K
Sbjct: 248 SGGNWNTVSETAKDLVSKMLHVDPHQRLTAK 278

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 158 KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 208
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 209 NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 265
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 266 QGVIHRDIKSDSILLTHDGRVKLSDF 291

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 303 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 360
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 361 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 404

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           +A KV+DK +   R+      I   +L    HP + TL    D  +   L+TE   GG+L
Sbjct: 55  YAVKVIDKSK---RDPSEEIEI---LLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGEL 108
Query: 174 --HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL 220
              +LRQ    K F E    F    +   +E+LH  G+++RDLKP N+L
Sbjct: 109 LDKILRQ----KFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNIL 153

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI-----DHELTLANVVARAL 375
           T  ++APE++  +G+    D W+LGI ++ +  G TPF        +  LT        L
Sbjct: 188 TANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTL 247
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK 406
                 +V   AKDL++++L  DP +R+ +K
Sbjct: 248 SGGNWNTVSETAKDLVSKMLHVDPHQRLTAK 278

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R  +  GT  Y+APE++S +GH   VD W++G  ++ L  G  PF+    + T   +   
Sbjct: 173 RKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 232
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
               PK   +   A  LI ++L  DPT R
Sbjct: 233 EYSIPKH--INPVAASLIQKMLQTDPTAR 259

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 130/341 (38%), Gaps = 92/341 (26%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD--KRELVSRNKESRARIERE 138
           L+D   +  LG G  G V+    ++K+  + C +A K +    REL      +R ++ RE
Sbjct: 4   LTDFEPIQCLGRGGFGVVF----EAKNKVDDCNYAIKRIRLPNREL------AREKVMRE 53
Query: 139 I--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQ-------------RQPDK 183
           +  L  L+HP +   +        +  L    P   L++  Q             R   +
Sbjct: 54  VKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIE 113
Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
               S       ++  A+EFLH  G+++RDLKP N+    D        D+   GD    
Sbjct: 114 ERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMD--------DVVKVGDFGLV 165
Query: 244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT 303
           TA           DQ   +  V  P             +PA +                 
Sbjct: 166 TAM----------DQDEEEQTVLTP-------------MPAYA----------------- 185
Query: 304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFK-GID 362
                     R    VGT  Y++PE I G  + + VD ++LG+ +FEL Y   PF   ++
Sbjct: 186 ----------RHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME 232
Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQ-LLVKDPTRR 402
              TL +V  R L+FP   +   P + ++ Q +L   P  R
Sbjct: 233 RVRTLTDV--RNLKFPPLFTQKYPCEYVMVQDMLSPSPMER 271

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R  +  GT  Y+APE++S +GH   VD W++G  ++ L  G  PF+    + T   +   
Sbjct: 173 RKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 232
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
               PK   +   A  LI ++L  DPT R
Sbjct: 233 EYSIPKH--INPVAASLIQKMLQTDPTAR 259

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 15  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 69
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q   ++  H   ++ Y S++  
Sbjct: 70  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQ-YTSQICK 128
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 129 GMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 164

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 2   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 56
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 106
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKPEN+L+ ++G I L DF L+
Sbjct: 107 KSYLFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 151

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 81  LSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           LSD   V   LG G    VY  + K            K +DK+ +         R E  +
Sbjct: 51  LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIV---------RTEIGV 101
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEV 197
           L  L HP +  L    + P    L+ E   GG+L   ++ +    +R    AV+    ++
Sbjct: 102 LLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVK----QI 157
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           + A+ +LH  GI++RDLKPEN+L  +   D  + + DF LS
Sbjct: 158 LEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G  +IV   + ++++   GT  Y APEI+ G  +G  VD W++GI  + L  G  
Sbjct: 191 KIADFGLSKIVEHQVLMKTVC--GTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFE 248
Query: 357 PFKGIDHELTLANVVARALEFPKEP---SVPGPAKDLIAQLLVKDPTRRM 403
           PF     +  +   +     +   P    V   AKDL+ +L+V DP +R+
Sbjct: 249 PFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRL 298

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 1   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 55
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 105
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 2   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 56
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 106
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 38/87 (43%)
Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           MS  G + ++APE+I         D W+ G+ ++EL  G  PF+GID       V    L
Sbjct: 172 MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKL 231
Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             P   + P P   L+      DP  R
Sbjct: 232 ALPIPSTCPEPFAKLMEDCWNPDPHSR 258

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 1   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 55
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 56  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 105
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 36  KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 86
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 87  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 143
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 144 QGVIHRDIKSDSILLTHDGRVKLSDF 169

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 181 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 238
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 239 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 282

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +    +   + G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 52  KIGEGSTGIVCI----ATEKHTGKQVAVKKMDLRK-----QQRRELLFNEVVIMRDYHHD 102
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y++        ++ EF  GG L  +       R +E  +      V+ AL +LH 
Sbjct: 103 NVVDMYSSYLVGDELWVVMEFLEGGALTDI---VTHTRMNEEQIATVCLSVLRALSYLHN 159
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+ SDG I L+DF
Sbjct: 160 QGVIHRDIKSDSILLTSDGRIKLSDF 185

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
            VGT  ++APE+IS   +G  VD W+LGI + E+  G  P+
Sbjct: 201 LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPY 241

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 31  KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 81
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 82  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 138
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 139 QGVIHRDIKSDSILLTHDGRVKLSDF 164

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 176 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 233
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 234 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 277

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 27  KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 77
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 78  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 134
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 135 QGVIHRDIKSDSILLTHDGRVKLSDF 160

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 172 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 229
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 230 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 273

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 81  KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 131
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 132 NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 188
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 189 QGVIHRDIKSDSILLTHDGRVKLSDF 214

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 226 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 283
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 284 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 327

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HP 146
           ++G G  G V +  ++S    +G   A K MD R+     ++ R  +  E++ M D  H 
Sbjct: 38  KIGEGSTGIVCIATVRS----SGKLVAVKKMDLRK-----QQRRELLFNEVVIMRDYQHE 88
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  +Y +        ++ EF  GG L  +       R +E  +      V+ AL  LH 
Sbjct: 89  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHA 145
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDF 232
            G+I+RD+K +++L+  DG + L+DF
Sbjct: 146 QGVIHRDIKSDSILLTHDGRVKLSDF 171

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFEL------FYGTTPFKGIDHELTL 367
           R    VGT  ++APE+IS   +G  VD W+LGI + E+      ++   P K +  ++  
Sbjct: 183 RRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM--KMIR 240
Query: 368 ANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            N+  R     K  PS+ G     + +LLV+DP +R      A  + +H F 
Sbjct: 241 DNLPPRLKNLHKVSPSLKG----FLDRLLVRDPAQR----ATAAELLKHPFL 284

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F+ +LG G+ GSV + +      N G   A K     +L    +E     EREI  L+
Sbjct: 13  LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK-----KLQHSTEEHLRDFEREIEILK 67
Query: 142 MLDHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            L H  +            R   L+ E+ P G L    Q+  ++  H   ++ Y S++  
Sbjct: 68  SLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQ-YTSQICK 126
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +E+L     I+R+L   N+LV ++  + + DF L+
Sbjct: 127 GMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLT 162

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 2   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 56
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
            +L+ L+HP +  L   +       L+ EF    DL                ++ Y  ++
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQL 115
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 116 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 44/164 (26%)
Query: 115 AAKVMDKRELVSRNKESRARIEREI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGD 172
           A K+M+K ++   N +   RI+ E+  ++ L HP +  LY   +  ++ CL+ E C GG 
Sbjct: 55  AIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGH 114
Query: 173 L---------------------------------------HVLRQRQPDKRFHESAVRFY 193
           L                                       H  R+   D    E  +   
Sbjct: 115 LLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRE-SLDFVQREKLISNI 173
Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDG--HIMLTDFDLS 235
             ++  AL +LH  GI +RD+KPEN L  ++    I L DF LS
Sbjct: 174 MRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLS 217

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 320 GTHEYLAPEII--SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           GT  ++APE++  + E +G   D W+ G+ +  L  G  PF G++   T++ V+ + L F
Sbjct: 236 GTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCF 295
Query: 378 --PKEPSVPGPAKDLIAQLLVKDPTRRM 403
             P    +   A+DL++ LL ++   R 
Sbjct: 296 ENPNYNVLSPLARDLLSNLLNRNVDERF 323

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 17/216 (7%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G     + +      ++    FA K++ K  L+  ++  +  +E  I   L H  + 
Sbjct: 23  LGKGGFAKCFEIS----DADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVV 78
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
             +   +   +  ++ E C    L  L +R+  K   E   R+Y  ++V+  ++LH   +
Sbjct: 79  GFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRV 136
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ----SPPTGDQQPNDCAV 265
           I+RDLK  N+ +  D  + + DF L+ K +      +++       +P    ++ +   V
Sbjct: 137 IHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEV 196
Query: 266 DQPPFGNSSCIIPNCIVPA----VSCLHPKRRRKKK 297
           D    G   CI+   +V       SCL     R KK
Sbjct: 197 DVWSIG---CIMYTLLVGKPPFETSCLKETYLRIKK 229

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R     GT  Y+APE++S +GH   VD W++G  ++ L  G  PF+    + T   +   
Sbjct: 171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 230
Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
               PK   +   A  LI ++L  DPT R
Sbjct: 231 EYSIPKH--INPVAASLIQKMLQTDPTAR 257

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 4   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 58
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L+ L+HP +  L   +       L+ EF    DL                ++ Y  +++ 
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            L F H   +++RDLKPEN+L+ ++G I L DF L+
Sbjct: 118 GLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 153

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 5   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 59
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 60  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 109
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 110 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 154

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 2   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 56
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L+ L+HP +  L   +       L+ EF    DL                ++ Y  +++ 
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            L F H   +++RDLKPEN+L+ ++G I L DF L+
Sbjct: 116 GLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 151

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P  + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 6   PEFMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 60
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 61  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 110
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 111 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P  + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 6   PEFMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 60
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++        
Sbjct: 61  SLLKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLP 110
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 111 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 4   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 58
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 108
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 109 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 2   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 56
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 106
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 1   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 55
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 105
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 317 SFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
           S  GT  YLAPEII         G+G  VD W+ G+ ++ L  G+ PF      L L  +
Sbjct: 182 SVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI 241
Query: 371 VARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
           ++   +F  P+        KDL+++ LV  P +R  ++        H FF 
Sbjct: 242 MSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA----HPFFQ 288

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 1   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 55
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 105
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 2   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 56
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 106
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K ++ + G   A K   + E     K+   R E  +L+ L HP
Sbjct: 8   IGKIGEGSYGVVF----KCRNRDTGQIVAIKKFLESEDDPVIKKIALR-EIRMLKQLKHP 62
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            L  L       R   L+ E+C    LH L + Q  +   E  V+    + + A+ F H 
Sbjct: 63  NLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHK 120
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I+RD+KPEN+L+     I L DF  +
Sbjct: 121 HNCIHRDVKPENILITKHSVIKLCDFGFA 149

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 1   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 55
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 105
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 1   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 55
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K+F +++         +
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLI 105
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++L+ V  LGSG  G+VY      +        A K++++      N E     E  
Sbjct: 35  LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD--EAL 92
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+  +DHP L  L      P    L+T+  P G L        D       +  +  ++ 
Sbjct: 93  IMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDN-IGSQLLLNWCVQIA 150
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
             + +L    +++RDL   NVLV+S  H+ +TDF L+  L+GD     A
Sbjct: 151 KGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNA 199

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           LSD+     LG G   +V+    + +    G  FA KV +    + R  + + R E E+L
Sbjct: 13  LSDI-----LGQGATANVF----RGRHKKTGDLFAIKVFNNISFL-RPVDVQMR-EFEVL 61
Query: 141 EMLDHPFLPTLYATLD--CPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYASE 196
           + L+H  +  L+A  +    R   L+ EFCP G L+ + + +P   +   ES       +
Sbjct: 62  KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRD 120
Query: 197 VVVALEFLHMMGIIYRDLKPENVL--VRSDGHIM--LTDF 232
           VV  +  L   GI++R++KP N++  +  DG  +  LTDF
Sbjct: 121 VVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 2   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 56
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 57  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 106
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 SYLFQLLQGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G   +V+    + +    G  FA KV +    + R  + + R E E+L+ L+H  + 
Sbjct: 17  LGQGATANVF----RGRHKKTGDLFAIKVFNNISFL-RPVDVQMR-EFEVLKKLNHKNIV 70
Query: 150 TLYATLD--CPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYASEVVVALEFLH 205
            L+A  +    R   L+ EFCP G L+ + + +P   +   ES       +VV  +  L 
Sbjct: 71  KLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNHLR 129
Query: 206 MMGIIYRDLKPENVL--VRSDGHIM--LTDF 232
             GI++R++KP N++  +  DG  +  LTDF
Sbjct: 130 ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF 160

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 6   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 60
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 61  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 110
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 111 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 154

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 2   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 56
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 57  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 106
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 55
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 105
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 3   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 57
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 58  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 107
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 108 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 2   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 56
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 57  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 106
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 55
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 105
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           RLG G  G V+ ++ K         F   V   R  V R +E  A         L  P +
Sbjct: 100 RLGRGSFGEVHRMEDKQTG------FQCAVKKVRLEVFRAEELMA------CAGLTSPRI 147
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLH 205
             LY  +    W  +  E   GG L  L + Q   P+ R       +Y  + +  LE+LH
Sbjct: 148 VPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDR-----ALYYLGQALEGLEYLH 202
Query: 206 MMGIIYRDLKPENVLVRSDG-HIMLTDF 232
              I++ D+K +NVL+ SDG H  L DF
Sbjct: 203 SRRILHGDVKADNVLLSSDGSHAALCDF 230

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 1   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 55
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------V 190
           L+ L+HP +  L   +       L+ EF     LH     Q  K F +++         +
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKDFMDASALTGIPLPLI 105
Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + Y  +++  L F H   +++RDLKPEN+L+ ++G I L DF L+
Sbjct: 106 KSYLFQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 150

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 2   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 56
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 57  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 106
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 98/266 (36%), Gaps = 94/266 (35%)
Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLH +   Q      +  ++++  + + A++ LH   +I+RDLKP N+L+ S+  + + D
Sbjct: 99  DLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCD 155
Query: 232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
           F L+   D S       +D S PTG Q                                 
Sbjct: 156 FGLARIIDESA------ADNSEPTGQQS-------------------------------- 177
Query: 292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFE 350
                     G  E VA            T  Y APE+ ++   +  A+D W+ G  + E
Sbjct: 178 ----------GMTEYVA------------TRWYRAPEVMLTSAKYSRAMDVWSCGCILAE 215
Query: 351 LFYGTTPFKGID--HELTLANVVA---------------RALEFPKE------------- 380
           LF     F G D  H+L L   +                RA E+ K              
Sbjct: 216 LFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF 275
Query: 381 PSVPGPAKDLIAQLLVKDPTRRMGSK 406
           P V     DL+ ++LV DP +R+ +K
Sbjct: 276 PRVNPKGIDLLQRMLVFDPAKRITAK 301

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 55
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 105
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 98/266 (36%), Gaps = 94/266 (35%)
Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLH +   Q      +  ++++  + + A++ LH   +I+RDLKP N+L+ S+  + + D
Sbjct: 99  DLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCD 155
Query: 232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
           F L+   D S       +D S PTG Q                                 
Sbjct: 156 FGLARIIDESA------ADNSEPTGQQS-------------------------------- 177
Query: 292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFE 350
                     G  E VA            T  Y APE+ ++   +  A+D W+ G  + E
Sbjct: 178 ----------GMTEXVA------------TRWYRAPEVMLTSAKYSRAMDVWSCGCILAE 215
Query: 351 LFYGTTPFKGID--HELTLANVVA---------------RALEFPKE------------- 380
           LF     F G D  H+L L   +                RA E+ K              
Sbjct: 216 LFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF 275
Query: 381 PSVPGPAKDLIAQLLVKDPTRRMGSK 406
           P V     DL+ ++LV DP +R+ +K
Sbjct: 276 PRVNPKGIDLLQRMLVFDPAKRITAK 301

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 98/266 (36%), Gaps = 94/266 (35%)
Query: 172 DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
           DLH +   Q      +  ++++  + + A++ LH   +I+RDLKP N+L+ S+  + + D
Sbjct: 99  DLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCD 155
Query: 232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK 291
           F L+   D S       +D S PTG Q                                 
Sbjct: 156 FGLARIIDESA------ADNSEPTGQQS-------------------------------- 177
Query: 292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI-ISGEGHGNAVDWWTLGIFIFE 350
                     G  E VA            T  Y APE+ ++   +  A+D W+ G  + E
Sbjct: 178 ----------GMVEFVA------------TRWYRAPEVMLTSAKYSRAMDVWSCGCILAE 215
Query: 351 LFYGTTPFKGID--HELTLANVVA---------------RALEFPKE------------- 380
           LF     F G D  H+L L   +                RA E+ K              
Sbjct: 216 LFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMF 275
Query: 381 PSVPGPAKDLIAQLLVKDPTRRMGSK 406
           P V     DL+ ++LV DP +R+ +K
Sbjct: 276 PRVNPKGIDLLQRMLVFDPAKRITAK 301

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 320 GTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           GT  YLAPEII         G+G  VD W+ G+ ++ L  G+ PF      L L  +++ 
Sbjct: 172 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSG 231
Query: 374 ALEF--PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             +F  P+        KDL+++ LV  P +R  ++        H FF 
Sbjct: 232 NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA----HPFFQ 275

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           RLG G  G V+ ++ K         F   V   R  V R +E  A         L  P +
Sbjct: 81  RLGRGSFGEVHRMEDKQTG------FQCAVKKVRLEVFRAEELMA------CAGLTSPRI 128
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLH 205
             LY  +    W  +  E   GG L  L + Q   P+ R       +Y  + +  LE+LH
Sbjct: 129 VPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDR-----ALYYLGQALEGLEYLH 183
Query: 206 MMGIIYRDLKPENVLVRSDG-HIMLTDF 232
              I++ D+K +NVL+ SDG H  L DF
Sbjct: 184 SRRILHGDVKADNVLLSSDGSHAALCDF 211

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 320 GTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           GT  YLAPEII         G+G  VD W+ G+ ++ L  G+ PF      L L  +++ 
Sbjct: 185 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSG 244
Query: 374 ALEF--PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             +F  P+        KDL+++ LV  P +R  ++        H FF 
Sbjct: 245 NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA----HPFFQ 288

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L+ L+HP
Sbjct: 7   VEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLLKELNHP 61
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VRFYASEV 197
            +  L   +       L+ EF     LH     Q  K+F +++         ++ Y  ++
Sbjct: 62  NIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIKSYLFQL 111
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++L+ V  LGSG  G+VY      +        A K++++      N E     E  
Sbjct: 12  LKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD--EAL 69
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+  +DHP L  L      P    L+T+  P G L        D       +  +  ++ 
Sbjct: 70  IMASMDHPHLVRLLGVCLSPTIQ-LVTQLMPHGCLLEYVHEHKDN-IGSQLLLNWCVQIA 127
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
             + +L    +++RDL   NVLV+S  H+ +TDF L+  L+GD     A
Sbjct: 128 KGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNA 176

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 4   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 58
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L+ L+HP +  L   +       L+ EF    DL                ++ Y  +++ 
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 118 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 71
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 72  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 128 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 175

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK--VMDKRELVSRNKESRARIEREI 139
           S  + + +LG+G   +VY    K  +   G + A K   +D  E       S A  E  +
Sbjct: 5   SQFKQLEKLGNGTYATVY----KGLNKTTGVYVALKEVKLDSEE----GTPSTAIREISL 56
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR---QPDKRFHESAVRFYASE 196
           ++ L H  +  LY  +       L+ EF        +  R      +    + V+++  +
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++  L F H   I++RDLKP+N+L+   G + L DF L+
Sbjct: 117 LLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +
Sbjct: 3   SMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISL 57
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L+ L+HP +  L   +       L+ EF    DL                ++ Y  +++ 
Sbjct: 58  LKELNHPNIVKLLDVIHTENKLYLVFEFL-SMDLKDFMDASALTGIPLPLIKSYLFQLLQ 116
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 117 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 70
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 71  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 126
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 127 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 174

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 71
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 72  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 128 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 71
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 72  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 128 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 26  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 79
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 80  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 135
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 136 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 183

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 68
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 69  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 125 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 172

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P ++ + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E 
Sbjct: 2   PGSMENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREI 56
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA-------- 189
            +L+ L+HP +  L   +       L+ E       HV    Q  K+F +++        
Sbjct: 57  SLLKELNHPNIVKLLDVIHTENKLYLVFE-------HV---DQDLKKFMDASALTGIPLP 106
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++ Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 68
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 69  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 125 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 172

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 15  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 68
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 69  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 125 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPA 172

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 11  TDITMKHKLGGGQFGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 64
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +      + + A+++  
Sbjct: 65  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 121 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 168

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 67
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 68  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 124 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPA 171

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-----LE 141
           V  +G G  G+VY    K++  ++G F A K +                 RE+     LE
Sbjct: 14  VAEIGVGAYGTVY----KARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLE 69
Query: 142 MLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
             +HP +  L       R        L+ E     DL     + P        ++    +
Sbjct: 70  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQ 128
Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +  L+FLH   I++RDLKPEN+LV S G + L DF L+
Sbjct: 129 FLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLA 167

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREI-----L 140
           V  +G G  G V+    K++   NG  F A    KR  V   +E       RE+     L
Sbjct: 16  VAEIGEGAYGKVF----KARDLKNGGRFVAL---KRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 141 EMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  +HP +  L+      R        L+ E     DL     + P+       ++    
Sbjct: 69  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMF 127
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  L+FLH   +++RDLKP+N+LV S G I L DF L+
Sbjct: 128 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 128 NKESRARIEREILEMLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRF 185
           N E+  + E ++L  L H  +  L   L  +  +   ++ E+C  G +  +    P+KRF
Sbjct: 48  NGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRF 106
Query: 186 HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-----LKGDN 240
                  Y  +++  LE+LH  GI+++D+KP N+L+ + G + ++   ++        D+
Sbjct: 107 PVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADD 166
Query: 241 STSTAQLVSDQSPP 254
           +  T+Q      PP
Sbjct: 167 TCRTSQGSPAFQPP 180

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 71
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +      + + A+++  
Sbjct: 72  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 128 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY-ASEVV 198
              HP L  L     C R     ++TEF   G+L +   R+ +++   + V  Y A+++ 
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNL-LDYLRECNRQEVSAVVLLYMATQIS 121
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
            A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREI-----L 140
           V  +G G  G V+    K++   NG  F A    KR  V   +E       RE+     L
Sbjct: 16  VAEIGEGAYGKVF----KARDLKNGGRFVAL---KRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 141 EMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  +HP +  L+      R        L+ E     DL     + P+       ++    
Sbjct: 69  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMF 127
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  L+FLH   +++RDLKP+N+LV S G I L DF L+
Sbjct: 128 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +      + + A+++  
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+ +  LG G  G V L +   +  N G   A K +        N  +  + E EIL  L
Sbjct: 23  LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNL 80
Query: 144 DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            H  +       T D      L+ EF P G L     +  +K   +  ++ YA ++   +
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLK-YAVQICKGM 139
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
           ++L     ++RDL   NVLV S+  + + DF L+   +       +  D+  P 
Sbjct: 140 DYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 193

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK---VMDKRELVSRNKESRARIEREILEML 143
           V  +G G  G+VY    K++  ++G F A K   V +  E +  +      + R  LE  
Sbjct: 9   VAEIGVGAYGTVY----KARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR-LEAF 63
Query: 144 DHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +HP +  L       R        L+ E     DL     + P        ++    + +
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L+FLH   I++RDLKPEN+LV S G + L DF L+
Sbjct: 123 RGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK---VMDKRELVSRNKESRARIEREILEML 143
           V  +G G  G+VY    K++  ++G F A K   V +  E +  +      + R  LE  
Sbjct: 9   VAEIGVGAYGTVY----KARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR-LEAF 63
Query: 144 DHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +HP +  L       R        L+ E     DL     + P        ++    + +
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L+FLH   I++RDLKPEN+LV S G + L DF L+
Sbjct: 123 RGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREI-----L 140
           V  +G G  G V+    K++   NG  F A    KR  V   +E       RE+     L
Sbjct: 16  VAEIGEGAYGKVF----KARDLKNGGRFVAL---KRVRVQTGEEGMPLSTIREVAVLRHL 68
Query: 141 EMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  +HP +  L+      R        L+ E     DL     + P+       ++    
Sbjct: 69  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-DQDLTTYLDKVPEPGVPTETIKDMMF 127
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  L+FLH   +++RDLKP+N+LV S G I L DF L+
Sbjct: 128 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK---VMDKRELVSRNKESRARIEREILEML 143
           V  +G G  G+VY    K++  ++G F A K   V +  E +  +      + R  LE  
Sbjct: 9   VAEIGVGAYGTVY----KARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR-LEAF 63
Query: 144 DHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +HP +  L       R        L+ E     DL     + P        ++    + +
Sbjct: 64  EHPNVVRLMDVCATSRTDREIKVTLVFEHV-DQDLRTYLDKAPPPGLPAETIKDLMRQFL 122
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L+FLH   I++RDLKPEN+LV S G + L DF L+
Sbjct: 123 RGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A   + + +  +    S A  E  +L
Sbjct: 2   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALXKI-RLDTETEGVPSTAIREISLL 56
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 57  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 106
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 107 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 24/164 (14%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A   + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALXKI-RLDTETEGVPSTAIREISLL 55
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA---------VR 191
           + L+HP +  L   +       L+ EF     LH     Q  K+F +++         ++
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEF-----LH-----QDLKKFMDASALTGIPLPLIK 105
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            Y  +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 106 SYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide Length = 361

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 47/186 (25%)
Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLV-RSDGHIMLTDFDLSLKGDNSTSTAQLV 248
           VR Y   +  AL+ +H  GI++RD+KP N L  R      L DF L+ +G + T    L 
Sbjct: 119 VREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLA-QGTHDTKIELLK 177
Query: 249 SDQSPPTGDQ-QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV 307
             QS    ++   N C++                     CL  +++   + G PG     
Sbjct: 178 FVQSEAQQERCSQNKCSI---------------------CLSRRQQVAPRAGTPG----- 211
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
                           + APE+++       A+D W+ G+    L  G  PF     +LT
Sbjct: 212 ----------------FRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLT 255
Query: 367 -LANVV 371
            LA ++
Sbjct: 256 ALAQIM 261

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 64
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++TEF   G+L    +    +      + + A+++  
Sbjct: 65  --KHPNLVQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 121 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHA 168

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 117 KVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYATLDCPRWSCLLTEFCPGGDL- 173
           KV  KR  + + + S   + +EI  M    HP + + Y +        L+ +   GG + 
Sbjct: 42  KVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVL 101
Query: 174 ----HVL-RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
               H++ +         ES +     EV+  LE+LH  G I+RD+K  N+L+  DG + 
Sbjct: 102 DIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQ 161
Query: 229 LTDFDLS 235
           + DF +S
Sbjct: 162 IADFGVS 168

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 117 KVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYATLDCPRWSCLLTEFCPGGDL- 173
           KV  KR  + + + S   + +EI  M    HP + + Y +        L+ +   GG + 
Sbjct: 37  KVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVL 96
Query: 174 ----HVL-RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
               H++ +         ES +     EV+  LE+LH  G I+RD+K  N+L+  DG + 
Sbjct: 97  DIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQ 156
Query: 229 LTDFDLS 235
           + DF +S
Sbjct: 157 IADFGVS 163

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+ +  LG G  G V L +   +  N G   A K +        N  +  + E EIL  L
Sbjct: 11  LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNL 68
Query: 144 DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            H  +       T D      L+ EF P G L     +  +K   +  ++ YA ++   +
Sbjct: 69  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLK-YAVQICKGM 127
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
           ++L     ++RDL   NVLV S+  + + DF L+   +       +  D+  P 
Sbjct: 128 DYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 181

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++LR V  LGSG  G+VY         N     A KV+  RE  S         E  
Sbjct: 14  LKETELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVL--RENTSPKANKEILDEAY 71
Query: 139 ILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYAS 195
           ++  +  P++  L     C   +  L+T+  P G L  HV   R+   R     +  +  
Sbjct: 72  VMAGVGSPYVSRLLGI--CLTSTVQLVTQLMPYGCLLDHV---RENRGRLGSQDLLNWCM 126
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++   + +L  + +++RDL   NVLV+S  H+ +TDF L+
Sbjct: 127 QIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLA 166

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 259 TDITMKHKLGGGQYGEVYEGVWKKYS----LTVAVKTLKEDTMEVEEFLKEAAVMKEI-- 312
Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L    T + P +  ++TEF   G+L    +    +  +   + + A+++  
Sbjct: 313 --KHPNLVQLLGVCTREPPFY--IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 368
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+R+L   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 369 AMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 416

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LE 141
           DL  +  LG G  G V     K +   +G   A K +  R  V+  ++ R  ++ +I + 
Sbjct: 52  DLEPIMELGRGAYGVVE----KMRHVPSGQIMAVKRI--RATVNSQEQKRLLMDLDISMR 105
Query: 142 MLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDK--RFHESAVRFYASEV 197
            +D PF  T Y  L  +   W C+  E      L    ++  DK     E  +   A  +
Sbjct: 106 TVDCPFTVTFYGALFREGDVWICM--ELM-DTSLDKFYKQVIDKGQTIPEDILGKIAVSI 162
Query: 198 VVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           V ALE LH  + +I+RD+KP NVL+ + G + + DF +S
Sbjct: 163 VKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGIS 201

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 14  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 67
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++ EF   G+L    +    +  +   + + A+++  
Sbjct: 68  --KHPNLVQLLGV--CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 124 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 171

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D + V +LG G    V+    ++ +  N      K++     V +NK  R   E +ILE 
Sbjct: 38  DYQLVRKLGRGKYSEVF----EAINITNNEKVVVKILKP---VKKNKIKR---EIKILEN 87
Query: 143 L-DHPFLPTLYATLDCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L   P + TL   +  P  R   L+ E     D   L Q   D       +RFY  E++ 
Sbjct: 88  LRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILK 142
Query: 200 ALEFLHMMGIIYRDLKPENVLV 221
           AL++ H MGI++RD+KP NV++
Sbjct: 143 ALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q     H   V+F   +++  L+++H  GII+RDLKP NV V  D  + +
Sbjct: 116 GADLNNIVKSQALSDEH---VQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRI 172
Query: 230 TDFDLSLKGDNSTS 243
            DF L+ + D   +
Sbjct: 173 LDFGLARQADEEMT 186

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY    K+++   G   A K + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVY----KARNKLTGEVVALKKI-RLDTETEGVPSTAIREISLL 55
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + L+HP +  L   +       L+ E     DL                ++ Y  +++  
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEHV-HQDLKTFMDASALTGIPLPLIKSYLFQLLQG 114
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 115 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K   +      A K++D  E     ++ +  I   +L   D P
Sbjct: 27  LEKIGKGSFGEVF----KGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSP 80
Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++   Y +   D   W  ++ E+  GG    L +  P     E+ +     E++  L++L
Sbjct: 81  YVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 135
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H    I+RD+K  NVL+   G + L DF ++
Sbjct: 136 HSEKKIHRDIKAANVLLSEHGEVKLADFGVA 166

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++   FVGT  ++APE+I    + +  D W+LGI   EL  G  P   + H + +  ++ 
Sbjct: 174 IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL-HPMKVLFLIP 232
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK 430
           +      E +   P K+ +   L K+P+ R  +K     + +H+F       +LR AK
Sbjct: 233 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK----ELLKHKF-------ILRNAK 279

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 18  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 71
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++ EF   G+L    +    +  +   + + A+++  
Sbjct: 72  --KHPNLVQLLGV--CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 128 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 25  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 75
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 76  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 133
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 134 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 25  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 75
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 76  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 133
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 134 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K   +      A K++D  E     ++ +  I   +L   D P
Sbjct: 12  LEKIGKGSFGEVF----KGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSP 65
Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++   Y +   D   W  ++ E+  GG    L +  P     E+ +     E++  L++L
Sbjct: 66  YVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 120
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H    I+RD+K  NVL+   G + L DF ++
Sbjct: 121 HSEKKIHRDIKAANVLLSEHGEVKLADFGVA 151

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K   +      A K++D  E     ++ +  I   +L   D P
Sbjct: 12  LEKIGKGSFGEVF----KGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSP 65
Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++   Y +   D   W  ++ E+  GG    L +  P     E+ +     E++  L++L
Sbjct: 66  YVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 120
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H    I+RD+K  NVL+   G + L DF ++
Sbjct: 121 HSEKKIHRDIKAANVLLSEHGEVKLADFGVA 151

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++  +FVGT  ++APE+I    + +  D W+LGI   EL  G  P   + H + +  ++ 
Sbjct: 159 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL-HPMKVLFLIP 217
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK 430
           +      E +   P K+ +   L K+P+ R  +K     + +H+F       +LR AK
Sbjct: 218 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK----ELLKHKF-------ILRNAK 264

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYS----LTVAVKTLKEDTMEVEEFLKEAAVMKEI-- 273
Query: 142 MLDHPFLPTLYATLDCPRWS--CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY-ASEVV 198
              HP L  L     C R     ++TEF   G+L +   R+ +++   + V  Y A+++ 
Sbjct: 274 --KHPNLVQLLGV--CTREPPFYIITEFMTYGNL-LDYLRECNRQEVSAVVLLYMATQIS 328
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
            A+E+L     I+R+L   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 329 SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 377

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V+    K   +      A K++D  E     ++ +  I   +L   D P
Sbjct: 32  LEKIGKGSFGEVF----KGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSP 85
Query: 147 FLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           ++   Y +   D   W  ++ E+  GG    L +  P     E+ +     E++  L++L
Sbjct: 86  YVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYL 140
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           H    I+RD+K  NVL+   G + L DF ++
Sbjct: 141 HSEKKIHRDIKAANVLLSEHGEVKLADFGVA 171

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++  +FVGT  ++APE+I    + +  D W+LGI   EL  G  P   + H + +  ++ 
Sbjct: 179 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL-HPMKVLFLIP 237
Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAK 430
           +      E +   P K+ +   L K+P+ R  +K     + +H+F       +LR AK
Sbjct: 238 KNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAK----ELLKHKF-------ILRNAK 284

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 11  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 64
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++ EF   G+L    +    +      + + A+++  
Sbjct: 65  --KHPNLVQLLGV--CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 121 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 168

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LE 141
           DL  +  LG G  G V     K +   +G   A K +  R  V+  ++ R  ++ +I + 
Sbjct: 8   DLEPIMELGRGAYGVVE----KMRHVPSGQIMAVKRI--RATVNSQEQKRLLMDLDISMR 61
Query: 142 MLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDK--RFHESAVRFYASEV 197
            +D PF  T Y  L  +   W C+  E      L    ++  DK     E  +   A  +
Sbjct: 62  TVDCPFTVTFYGALFREGDVWICM--ELMDTS-LDKFYKQVIDKGQTIPEDILGKIAVSI 118
Query: 198 VVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           V ALE LH  + +I+RD+KP NVL+ + G + + DF +S
Sbjct: 119 VKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGIS 157

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 63/208 (30%)
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
           ++  A+EFLH  G+++RDLKP N+    D        D+   GD    TA          
Sbjct: 172 QIAEAVEFLHSKGLMHRDLKPSNIFFTMD--------DVVKVGDFGLVTAM--------- 214
Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS 315
            DQ   +  V  P             +PA +    +                        
Sbjct: 215 -DQDEEEQTVLTP-------------MPAYATHXGQ------------------------ 236
Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
              VGT  Y++PE I G  + + VD ++LG+ +FEL Y  +    ++    + +V  R L
Sbjct: 237 ---VGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFS--TQMERVRIITDV--RNL 289
Query: 376 EFPKEPSVPGPAKDLIAQ-LLVKDPTRR 402
           +FP   +   P + ++ Q +L   PT R
Sbjct: 290 KFPLLFTQKYPQEHMMVQDMLSPSPTER 317

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 60  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 116
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 117 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 83  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 139
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 140 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 193

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 58  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 114
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 115 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 168

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 57  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 113
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 114 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 167

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 14/208 (6%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           R+G G  G VY    K   ++     A K++D  E     ++ +  I   +L   D P++
Sbjct: 26  RIGKGSFGEVY----KGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSPYI 79
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
              + +        ++ E+  GG    L +  P     E+ +     E++  L++LH   
Sbjct: 80  TRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYLHSER 136
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLSLK-GDNSTSTAQLVSD---QSPPTGDQQPNDCA 264
            I+RD+K  NVL+   G + L DF ++ +  D        V      +P    Q   D  
Sbjct: 137 KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFK 196
Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKR 292
            D    G ++  +     P  S LHP R
Sbjct: 197 ADIWSLGITAIELAKG-EPPNSDLHPMR 223

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           + AK +  +++ S ++     +E   L  ++HP +  LY    C    CL+ E+  GG L
Sbjct: 30  WRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGA--CLNPVCLVMEYAEGGSL 87
Query: 174 H-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---GIIYRDLKPENVLVRSDGHIM- 228
           + VL   +P   +  +    +  +    + +LH M    +I+RDLKP N+L+ + G ++ 
Sbjct: 88  YNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLK 147
Query: 229 LTDF----DLSLKGDNSTSTAQLVS 249
           + DF    D+     N+  +A  ++
Sbjct: 148 ICDFGTACDIQTHMTNNKGSAAWMA 172

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++ EF   G+L    +    +      + + A+++  
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           V+F   +++  L+++H  GII+RDLKP NV V  D  + + DF L+ + D   +
Sbjct: 133 VQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMT 186

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +D+   H+LG G  G VY    K  S       A K + +  +        A + +EI  
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLKEAAVMKEI-- 66
Query: 142 MLDHPFLPTLYATLDCPRW--SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              HP L  L     C R     ++ EF   G+L    +    +      + + A+++  
Sbjct: 67  --KHPNLVQLLGV--CTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
           A+E+L     I+RDL   N LV  +  + + DF LS  + GD  T+ A
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 170

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 55  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 111
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 112 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 52  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 108
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 109 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 162

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP- 381
           EY APE+   +    A D W+LG  ++ L  G  PF    ++  + N++     F +E  
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAF 227
Query: 382 -SVPGPAKDLIAQLLVKDPTRRMGS 405
             +   A D + +LLVK+   RM +
Sbjct: 228 KEISIEAMDFVDRLLVKERKSRMTA 252

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 16  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 66
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 67  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 124
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 125 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 158

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 17/237 (7%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+F   +G G   +VY    K   +      A   +  R+L ++++  R + E E L+ L
Sbjct: 28  LKFDIEIGRGSFKTVY----KGLDTETTVEVAWCELQDRKL-TKSERQRFKEEAEXLKGL 82
Query: 144 DHPFLPTLY----ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            HP +   Y    +T+   +   L+TE    G L    +R    +     +R +  +++ 
Sbjct: 83  QHPNIVRFYDSWESTVKGKKCIVLVTELXTSGTLKTYLKRFKVXKI--KVLRSWCRQILK 140
Query: 200 ALEFLHMMG--IIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDNSTSTAQLVSDQ-SPPT 255
            L+FLH     II+RDLK +N+ +    G + + D  L+     S + A + + +   P 
Sbjct: 141 GLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFXAPE 200
Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR--RRKKKLGNPGTPEIVAEP 310
             ++  D +VD   FG           P   C +  +  RR      P + + VA P
Sbjct: 201 XYEEKYDESVDVYAFGXCXLEXATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIP 257

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 10  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 60
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 61  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 118
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 119 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 152

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 55  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVR-KYSLDLA 111
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 112 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 4/146 (2%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G   +VY  + + K++N         +  R          A  E ++L+ L HP + 
Sbjct: 18  LGEGQFATVY--KARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 75
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L           L+ +F    DL V+  +        S ++ Y    +  LE+LH   I
Sbjct: 76  GLLDAFGHKSNISLVFDFMET-DLEVI-IKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWI 133
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++RDLKP N+L+  +G + L DF L+
Sbjct: 134 LHRDLKPNNLLLDENGVLKLADFGLA 159

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + R+G G  G V+    K   +      A K++D  E     ++ +  I   +L   D  
Sbjct: 28  LERIGKGSFGEVF----KGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEIT--VLSQCDSS 81
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           ++   Y +        ++ E+  GG    L +  P   F E  +     E++  L++LH 
Sbjct: 82  YVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHS 138
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I+RD+K  NVL+   G + L DF ++
Sbjct: 139 EKKIHRDIKAANVLLSEQGDVKLADFGVA 167

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 9   DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 59
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 60  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 117
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 118 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 151

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 114 FAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL 173
           + AK +  +++ S ++     +E   L  ++HP +  LY     P   CL+ E+  GG L
Sbjct: 29  WRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSL 86
Query: 174 H-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---GIIYRDLKPENVLVRSDGHIM- 228
           + VL   +P   +  +    +  +    + +LH M    +I+RDLKP N+L+ + G ++ 
Sbjct: 87  YNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLK 146
Query: 229 LTDF----DLSLKGDNSTSTAQLVS 249
           + DF    D+     N+  +A  ++
Sbjct: 147 ICDFGTACDIQTHMTNNKGSAAWMA 171

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 317 SFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           +F GT +Y+APEII     G+G A D W+LG  I E+  G  PF  +         V   
Sbjct: 182 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF 241
Query: 375 LEFPKEP-SVPGPAKDLIAQLLVKDPTRR 402
              P+ P S+   AK  I +    DP +R
Sbjct: 242 KVHPEIPESMSAEAKAFILKCFEPDPDKR 270

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 55  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKFS-LDLA 111
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 112 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 55
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 56  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 113
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 114 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 147

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL F+  LG+G  G V   + + +            M + E +          E +++  
Sbjct: 10  DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE---------EAKVMMN 60
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
           L H  L  LY      R   ++TE+   G  L+ LR+ +   RF    +     +V  A+
Sbjct: 61  LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAM 118
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 119 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 152

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           ++DL  +  +GSG  G V+ ++ +      G   A K M +    S NKE   RI     
Sbjct: 24  INDLENLGEMGSGTCGQVWKMRFR----KTGHVIAVKQMRR----SGNKEENKRI----- 70
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQ------RQPDKRFH----ESAV 190
            ++D   L  +  + DCP        F    D+ +  +       +  KR      E  +
Sbjct: 71  -LMD---LDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERIL 126
Query: 191 RFYASEVVVALEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                 +V AL +L    G+I+RD+KP N+L+   G I L DF +S
Sbjct: 127 GKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGIS 172

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 435 REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKFS-LDLA 491
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV S+  + L DF LS   ++ST
Sbjct: 492 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 545

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           RLG G  G V+  ++K K +     F   V   R  V R +E  A         L  P +
Sbjct: 79  RLGRGSFGEVH--RMKDKQTG----FQCAVKKVRLEVFRVEELVA------CAGLSSPRI 126
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLH 205
             LY  +    W  +  E   GG L  L ++    P+ R       +Y  + +  LE+LH
Sbjct: 127 VPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDR-----ALYYLGQALEGLEYLH 181
Query: 206 MMGIIYRDLKPENVLVRSDG-HIMLTDFD--LSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
              I++ D+K +NVL+ SDG    L DF   L L+ D     + L  D  P T      +
Sbjct: 182 TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG-LGKSLLTGDYIPGTETHMAPE 240
Query: 263 CAVDQP 268
             + +P
Sbjct: 241 VVMGKP 246

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL    ++G+G  G+V+      ++  +G   A K++ +++  +       R E  I++ 
Sbjct: 38  DLNIKEKIGAGSFGTVH------RAEWHGSDVAVKILMEQDFHAERVNEFLR-EVAIMKR 90
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVAL 201
           L HP +      +  P    ++TE+   G L+ +L +    ++  E      A +V   +
Sbjct: 91  LRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGM 150
Query: 202 EFLHMMG--IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +LH     I++RDLK  N+LV     + + DF LS
Sbjct: 151 NYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLS 186

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL--EMLDHPF 147
           LG G  G VY      +  +N    A K     E+  R+      +  EI   + L H  
Sbjct: 16  LGKGTYGIVY----AGRDLSNQVRIAIK-----EIPERDSRYSQPLHEEIALHKHLKHKN 66
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +     +     +  +  E  PGG L  +LR +    + +E  + FY  +++  L++LH 
Sbjct: 67  IVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 126
Query: 207 MGIIYRDLKPENVLVRS-DGHIMLTDFDLS 235
             I++RD+K +NVL+ +  G + ++DF  S
Sbjct: 127 NQIVHRDIKGDNVLINTYSGVLKISDFGTS 156

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 317 SFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
           +F GT +Y+APEII     G+G A D W+LG  I E+  G  PF  +         V   
Sbjct: 168 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF 227
Query: 375 LEFPKEP-SVPGPAKDLIAQLLVKDPTRR 402
              P+ P S+   AK  I +    DP +R
Sbjct: 228 KVHPEIPESMSAEAKAFILKCFEPDPDKR 256

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DL    ++G+G  G+V+      ++  +G   A K++ +++  +       R E  I++ 
Sbjct: 38  DLNIKEKIGAGSFGTVH------RAEWHGSDVAVKILMEQDFHAERVNEFLR-EVAIMKR 90
Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVAL 201
           L HP +      +  P    ++TE+   G L+ +L +    ++  E      A +V   +
Sbjct: 91  LRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGM 150
Query: 202 EFLHMMG--IIYRDLKPENVLVRSDGHIMLTDFDLS-LKGD---NSTSTAQLVSDQSPPT 255
            +LH     I++R+LK  N+LV     + + DF LS LK     +S S A      +P  
Sbjct: 151 NYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEV 210
Query: 256 GDQQPNDCAVDQPPFG 271
              +P++   D   FG
Sbjct: 211 LRDEPSNEKSDVYSFG 226

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V  VQ +     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 17  DFERISELGAGNGGVVTKVQHRP----SGLIMARKLIHLEIKPAIRNQIIR---ELQVLH 69
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             + P++   Y          +  E   GG L  VL++    KR  E  +   +  V+  
Sbjct: 70  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA---KRIPEEILGKVSIAVLRG 126
Query: 201 LEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 127 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVS 162

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 69  DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 121
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             + P++   Y          +  E   GG L  VL++     R  E  +   +  V+  
Sbjct: 122 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKG 178
Query: 201 LEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 179 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 214

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKV-MDKRELVSRNKESRARIEREILEMLDHPFL 148
           LG G+ GSV   QLK +   +G F    V M K ++++ +       E   ++  DHP +
Sbjct: 31  LGKGEFGSVREAQLKQE---DGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV 87
Query: 149 PTLYATLDCPRWS------CLLTEFCPGGDLH--VLRQRQPDKRFH---ESAVRFYASEV 197
             L       R         ++  F   GDLH  +L  R  +  F+   ++ VRF   ++
Sbjct: 88  AKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMV-DI 146
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
              +E+L     I+RDL   N ++  D  + + DF LS K
Sbjct: 147 ACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRK 186

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G V L Q      +N  ++A KV+   +  +R+ +  A I ++I     + 
Sbjct: 40  IRKMGDGTFGRVLLCQ----HIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINN 95
Query: 147 FLPTLY-ATLDCPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
                Y          CL+ E  P G  L+ +  R     FH   ++ Y  E++ AL +L
Sbjct: 96  NNIVKYHGKFMYYDHMCLIFE--PLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYL 153
Query: 205 HMMGIIYRDLKPENVLV 221
             M + + DLKPEN+L+
Sbjct: 154 RKMSLTHTDLKPENILL 170

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   LRQ   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLRQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           V+F   +++  L+++H  GII+RDLKP NV V  D  + + DF L+ + D   +
Sbjct: 125 VQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADEEMT 178

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 272 NSSCIIP----NCIVPAV----SCLHPKRR----------------RKKKLGNPGTPEIV 307
           N +C IP     CI+ +V    S +H ++                  + KL + G  E +
Sbjct: 143 NYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYM 202
Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFK-GIDHE 364
              +D +     GT+E++ PE  S E   +G  VD W+LGI ++ +FY   PF   I   
Sbjct: 203 ---VDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV 259
Query: 365 LTLANVVARALEFP 378
               N+  + +E+P
Sbjct: 260 ELFNNIRTKNIEYP 273

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 40/127 (31%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR---- 373
           +V T  Y APE+I G G+   VD W++G  + EL  G+  F+G DH      V+ +    
Sbjct: 183 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 242
Query: 374 ALEF------------PKEPSVPG------------------------PAKDLIAQLLVK 397
           + EF               P+ PG                         A+DL++++LV 
Sbjct: 243 SAEFMAALQPTVRNYVENRPAYPGIAFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 302
Query: 398 DPTRRMG 404
           DP +R+ 
Sbjct: 303 DPDKRIS 309

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 80  TLSDLRFVHR----LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI 135
           T  ++R V+R    +GSG  G+V      +     G   A K +  R   S     RA  
Sbjct: 19  TAWEVRAVYRDLQPVGSGAYGAV----CSAVDGRTGAKVAIKKL-YRPFQSELFAKRAYR 73
Query: 136 EREILEMLDHPFLPTLY------ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA 189
           E  +L+ + H  +  L        TLD      L+  F  G DL  L + +   +  E  
Sbjct: 74  ELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHE---KLGEDR 129
Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
           ++F   +++  L ++H  GII+RDLKP N+ V  D  + + DF L+ + D+ 
Sbjct: 130 IQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE 181

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           RF  ++G G  G+VY     +     G   A + M+ ++     +  +  I  EIL M +
Sbjct: 24  RF-EKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKELIINEILVMRE 73
Query: 145 HPFLPTLYATLDC-----PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           +   P +   LD        W  ++ E+  GG L  V+ +   D    E  +     E +
Sbjct: 74  NKN-PNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRECL 126
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            ALEFLH   +I+RD+K +N+L+  DG + LTDF
Sbjct: 127 QALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 160

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P   +  + VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 370 VVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
           +      E      +    +D + + L  D  +R GS   A  + +HQF        L+ 
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR-GS---AKELLQHQF--------LKI 275
Query: 429 AKP--PFIPRPVTCRDLTTTN 447
           AKP     P     ++ T  N
Sbjct: 276 AKPLSSLTPLIAAAKEATKNN 296

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           RF  ++G G  G+VY     +     G   A + M+ ++     +  +  I  EIL M +
Sbjct: 24  RF-EKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKELIINEILVMRE 73
Query: 145 HPFLPTLYATLDC-----PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           +   P +   LD        W  ++ E+  GG L  V+ +   D    E  +     E +
Sbjct: 74  NKN-PNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRECL 126
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            ALEFLH   +I+RD+K +N+L+  DG + LTDF
Sbjct: 127 QALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 160

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P   +    VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  
Sbjct: 168 PEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 370 VVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
           +      E      +    +D + + L  D  +R GS   A  + +HQF        L+ 
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR-GS---AKELLQHQF--------LKI 275
Query: 429 AKP--PFIPRPVTCRDLTTTN 447
           AKP     P     ++ T  N
Sbjct: 276 AKPLSSLTPLIAAAKEATKNN 296

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           RF  ++G G  G+VY     +     G   A + M+ ++     +  +  I  EIL M +
Sbjct: 24  RF-EKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKELIINEILVMRE 73
Query: 145 HPFLPTLYATLDC-----PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           +   P +   LD        W  ++ E+  GG L  V+ +   D    E  +     E +
Sbjct: 74  NKN-PNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRECL 126
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            ALEFLH   +I+RD+K +N+L+  DG + LTDF
Sbjct: 127 QALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 160

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P   +    VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  
Sbjct: 168 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 227
Query: 370 VVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
           +      E      +    +D + + L  D  +R GS   A  + +HQF        L+ 
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GS---AKELLQHQF--------LKI 275
Query: 429 AKP--PFIPRPVTCRDLTTTN 447
           AKP     P     ++ T  N
Sbjct: 276 AKPLSSLTPLIAAAKEATKNN 296

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  +D++F   +G G+ G V    LK++   +G    A +   +E  S++       E E
Sbjct: 12  LDWNDIKFQDVIGEGNFGQV----LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 67
Query: 139 IL-EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQR---QPDKRF-------- 185
           +L ++  HP +  L    +   +  L  E+ P G+L   LR+    + D  F        
Sbjct: 68  VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 127
Query: 186 --HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                 +  +A++V   +++L     I+RDL   N+LV  +    + DF LS
Sbjct: 128 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 179

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           RF  ++G G  G+VY     +     G   A + M+ ++     +  +  I  EIL M +
Sbjct: 25  RF-EKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKELIINEILVMRE 74
Query: 145 HPFLPTLYATLDC-----PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           +   P +   LD        W  ++ E+  GG L  V+ +   D    E  +     E +
Sbjct: 75  NKN-PNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRECL 127
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            ALEFLH   +I+RD+K +N+L+  DG + LTDF
Sbjct: 128 QALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDF 161

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P   +    VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  
Sbjct: 169 PEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 370 VVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
           +      E      +    +D + + L  D  +R GS   A  + +HQF        L+ 
Sbjct: 229 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GS---AKELIQHQF--------LKI 276
Query: 429 AKP--PFIPRPVTCRDLTTTN 447
           AKP     P     ++ T  N
Sbjct: 277 AKPLSSLTPLIAAAKEATKNN 297

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  +D++F   +G G+ G V    LK++   +G    A +   +E  S++       E E
Sbjct: 22  LDWNDIKFQDVIGEGNFGQV----LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 77
Query: 139 IL-EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQR---QPDKRF-------- 185
           +L ++  HP +  L    +   +  L  E+ P G+L   LR+    + D  F        
Sbjct: 78  VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 137
Query: 186 --HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                 +  +A++V   +++L     I+RDL   N+LV  +    + DF LS
Sbjct: 138 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 189

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 22/208 (10%)
Query: 56  DDPCWKAIKEATSEGXXXXXXX------PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSN 109
           D  C + IK    EG              L + +L+ +  +G G+ G V L   +     
Sbjct: 161 DGLCTRLIKPKVMEGTVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVA 220
Query: 110 NGCFFAAKVMDKRELVSRNKESRARI-EREILEMLDHPFLPTLYATLDCPRWSC-LLTEF 167
             C            +  +  ++A + E  ++  L H  L  L   +   +    ++TE+
Sbjct: 221 VKC------------IKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268
Query: 168 CPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH 226
              G L   LR R       +  ++F + +V  A+E+L     ++RDL   NVLV  D  
Sbjct: 269 MAKGSLVDYLRSRGRSVLGGDCLLKF-SLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNV 327
Query: 227 IMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
             ++DF L+ +  ++  T +L    + P
Sbjct: 328 AKVSDFGLTKEASSTQDTGKLPVKWTAP 355

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 162 CLLT--EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV 219
           CLL   E   GG+L    Q + D+ F E        ++  A++FLH   I +RD+KPEN+
Sbjct: 100 CLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENL 159
Query: 220 LVRS---DGHIMLTDFDLS 235
           L  S   D  + LTDF  +
Sbjct: 160 LYTSKEKDAVLKLTDFGFA 178

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFK---------GIDHELTLANVVARA 374
           Y+APE++  E +  + D W+LG+ ++ L  G  PF          G+   + L       
Sbjct: 195 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQY---G 251
Query: 375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
              P+   V   AK LI  LL  DPT R+
Sbjct: 252 FPNPEWSEVSEDAKQLIRLLLKTDPTERL 280

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           R+G G  G V+  ++K K +     F   V   R  V R +E  A         L  P +
Sbjct: 65  RVGRGSFGEVH--RMKDKQTG----FQCAVKKVRLEVFRVEELVA------CAGLSSPRI 112
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLH 205
             LY  +    W  +  E   GG L  L ++    P+ R       +Y  + +  LE+LH
Sbjct: 113 VPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDR-----ALYYLGQALEGLEYLH 167
Query: 206 MMGIIYRDLKPENVLVRSDG-HIMLTDFD--LSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
              I++ D+K +NVL+ SDG    L DF   L L+ D     + L  D  P T      +
Sbjct: 168 TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG-LGKSLLTGDYIPGTETHMAPE 226
Query: 263 CAVDQP 268
             + +P
Sbjct: 227 VVMGKP 232

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 162 CLLT--EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV 219
           CLL   E   GG+L    Q + D+ F E        ++  A++FLH   I +RD+KPEN+
Sbjct: 81  CLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENL 140
Query: 220 LVRS---DGHIMLTDFDLS 235
           L  S   D  + LTDF  +
Sbjct: 141 LYTSKEKDAVLKLTDFGFA 159

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFK---------GIDHELTLANVVARA 374
           Y+APE++  E +  + D W+LG+ ++ L  G  PF          G+   + L       
Sbjct: 176 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQY---G 232
Query: 375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRM 403
              P+   V   AK LI  LL  DPT R+
Sbjct: 233 FPNPEWSEVSEDAKQLIRLLLKTDPTERL 261

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K            M + + +          E E++ 
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---------EAEVMM 58
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+TEF   G L    + Q    F    +     +V   +
Sbjct: 59  KLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 117
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 118 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           R+G G  G V+  ++K K +     F   V   R  V R +E  A         L  P +
Sbjct: 81  RVGRGSFGEVH--RMKDKQTG----FQCAVKKVRLEVFRVEELVA------CAGLSSPRI 128
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLH 205
             LY  +    W  +  E   GG L  L ++    P+ R       +Y  + +  LE+LH
Sbjct: 129 VPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDR-----ALYYLGQALEGLEYLH 183
Query: 206 MMGIIYRDLKPENVLVRSDG-HIMLTDFD--LSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
              I++ D+K +NVL+ SDG    L DF   L L+ D     + L  D  P T      +
Sbjct: 184 TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG-LGKSLLTGDYIPGTETHMAPE 242
Query: 263 CAVDQP 268
             + +P
Sbjct: 243 VVMGKP 248

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 40/127 (31%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR---- 373
           +V T  Y APE+I G G+   VD W++G  + EL  G   F+G DH      V+ +    
Sbjct: 185 YVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTP 244
Query: 374 ALEF---------------PKEPSVP---------------------GPAKDLIAQLLVK 397
           + EF               PK P +                        A+DL++++LV 
Sbjct: 245 SAEFMAALQPTVRNYVENRPKYPGIKFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 304
Query: 398 DPTRRMG 404
           DP +R+ 
Sbjct: 305 DPDKRIS 311

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 59
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             + P++   Y          +  E   GG L  + ++    R  E  +   +  V+  L
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGL 117
Query: 202 EFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 118 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 111 GCFFAAKVMDKRELVSRNK----------ESRARIEREILEMLDHPFLPTLYATLDCPRW 160
           G  F AK  +  E+V+  +           S A  E  +L+ L H  +  L+  L   + 
Sbjct: 16  GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK 75
Query: 161 SCLLTEFCPGGDLHVLRQRQPDKRFHESA--------VRFYASEVVVALEFLHMMGIIYR 212
             L+ EFC           Q  K++ +S         V+ +  +++  L F H   +++R
Sbjct: 76  LTLVFEFCD----------QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHR 125
Query: 213 DLKPENVLVRSDGHIMLTDFDLS 235
           DLKP+N+L+  +G + L DF L+
Sbjct: 126 DLKPQNLLINRNGELKLADFGLA 148

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH 145
           F+ +LG G    V LV+      ++G F+A K +   E   R +  R   E ++  + +H
Sbjct: 33  FIQKLGEGGFSYVDLVE----GLHDGHFYALKRILCHEQQDREEAQR---EADMHRLFNH 85
Query: 146 PFLPTLYATLDCPRW------SCLLTEFCPGGDLHVLRQRQPDKR--FHESAVRFYASEV 197
           P +  L A   C R       + LL  F   G L    +R  DK     E  + +    +
Sbjct: 86  PNILRLVAY--CLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGI 143
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
              LE +H  G  +RDLKP N+L+  +G  +L D 
Sbjct: 144 CRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDL 178

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 59
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             + P++   Y          +  E   GG L  + ++    R  E  +   +  V+  L
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGL 117
Query: 202 EFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 118 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + +S ++    +G+G+ G V    LK        F A K +       + ++  +  E  
Sbjct: 30  IDISCVKIEQVIGAGEFGEVCSGHLKLPGKRE-IFVAIKTLKSGYTEKQRRDFLS--EAS 86
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   DHP +  L   +       ++TEF   G L     RQ D +F    +      + 
Sbjct: 87  IMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFL-RQNDGQFTVIQLVGMLRGIA 145
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
             +++L  M  ++RDL   N+LV S+    ++DF LS   ++ TS
Sbjct: 146 AGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 190

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 59
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             + P++   Y          +  E   GG L  + ++    R  E  +   +  V+  L
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGL 117
Query: 202 EFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 118 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 235 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 293
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 294 NPEWSEVSEEVKMLIRNLLKTEPTQRM 320

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P    D   ++ +G+G  G    ++ KS    +G     K +D   +    K+     E 
Sbjct: 2   PSRAEDYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVS-EV 56
Query: 138 EILEMLDHPFLPTLY-ATLDCPRWSC-LLTEFCPGGDLHVLRQRQPDKR--FHESAVRFY 193
            +L  L HP +   Y   +D    +  ++ E+C GGDL  +  +   +R    E  V   
Sbjct: 57  NLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRV 116
Query: 194 ASEVVVALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            +++ +AL+  H        +++RDLKP NV +    ++ L DF L+   ++ TS A+
Sbjct: 117 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK 174

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P    D   ++ +G+G  G    ++ KS    +G     K +D   +    K+     E 
Sbjct: 2   PSRAEDYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVS-EV 56
Query: 138 EILEMLDHPFLPTLY-ATLDCPRWSC-LLTEFCPGGDLHVLRQRQPDKR--FHESAVRFY 193
            +L  L HP +   Y   +D    +  ++ E+C GGDL  +  +   +R    E  V   
Sbjct: 57  NLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRV 116
Query: 194 ASEVVVALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            +++ +AL+  H        +++RDLKP NV +    ++ L DF L+   ++ TS A+
Sbjct: 117 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK 174

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 229 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 287
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 288 NPEWSEVSEEVKMLIRNLLKTEPTQRM 314

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 435 REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKFS-LDLA 491
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV +   + L DF LS   ++ST
Sbjct: 492 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDST 545

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 279 NCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNA 338
           N +V A  C+        KLG+ G    + +    ++       +++APE I+     +A
Sbjct: 521 NVLVSATDCV--------KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA 572
Query: 339 VDWWTLGIFIFE-LFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK 397
            D W  G+ ++E L +G  PF+G+ +   +   +      P  P+ P     L+ +    
Sbjct: 573 SDVWMFGVCMWEILMHGVKPFQGVKNNDVIGR-IENGERLPMPPNCPPTLYSLMTKCWAY 631
Query: 398 DPTRR 402
           DP+RR
Sbjct: 632 DPSRR 636

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  M
Sbjct: 13  DLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNAM 69
Query: 143 --LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
             LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V   
Sbjct: 70  HSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAEG 127
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 128 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 161

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 132 RARIEREILEM--LDHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHES 188
           R +  +E L M   DHP +  L   + + P W  ++ E C  G+L    Q +       +
Sbjct: 55  REKFLQEALTMRQFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKFS-LDLA 111
Query: 189 AVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST 242
           ++  YA ++  AL +L     ++RD+   NVLV +   + L DF LS   ++ST
Sbjct: 112 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDST 165

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 279 NCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNA 338
           N +V A  C+        KLG+ G    + +    ++       +++APE I+     +A
Sbjct: 141 NVLVSATDCV--------KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA 192
Query: 339 VDWWTLGIFIFE-LFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK 397
            D W  G+ ++E L +G  PF+G+ +   +   +      P  P+ P     L+ +    
Sbjct: 193 SDVWMFGVCMWEILMHGVKPFQGVKNNDVIGR-IENGERLPMPPNCPPTLYSLMTKCWAY 251
Query: 398 DPTRR 402
           DP+RR
Sbjct: 252 DPSRR 256

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  M
Sbjct: 19  DLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNAM 75
Query: 143 --LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
             LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V   
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAEG 133
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 134 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 167

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 183 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 241
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 242 NPEWSEVSEEVKMLIRNLLKTEPTQRM 268

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 184 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 242
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 243 NPEWSEVSEEVKMLIRNLLKTEPTQRM 269

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 183 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 241
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 242 NPEWSEVSEEVKMLIRNLLKTEPTQRM 268

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 185 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 243
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 244 NPEWSEVSEEVKMLIRNLLKTEPTQRM 270

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 185 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 243
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 244 NPEWSEVSEEVKMLIRNLLKTEPTQRM 270

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 189 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 247
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 248 NPEWSEVSEEVKMLIRNLLKTEPTQRM 274

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  M
Sbjct: 19  DLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNAM 75
Query: 143 --LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
             LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V   
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAEG 133
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 134 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 167

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 190 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 248
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 249 NPEWSEVSEEVKMLIRNLLKTEPTQRM 275

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 10  DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 62
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             + P++   Y          +  E   GG L  VL++     R  E  +   +  V+  
Sbjct: 63  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKG 119
Query: 201 LEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 120 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 155

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 34  DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 86
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             + P++   Y          +  E   GG L  VL++     R  E  +   +  V+  
Sbjct: 87  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKG 143
Query: 201 LEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 144 LTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 179

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 191 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 249
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 250 NPEWSEVSEEVKMLIRNLLKTEPTQRM 276

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            SDLR    +G G  G+VY     ++   N    A K M      S  K      E   L
Sbjct: 56  FSDLR---EIGHGSFGAVYF----ARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 108
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYASEVVV 199
           + L HP              + L+ E+C G    +L   ++P +    +AV   A +   
Sbjct: 109 QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQ--- 165
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            L +LH   +I+RD+K  N+L+   G + L DF
Sbjct: 166 GLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 198

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD 239
           +F E  +++   +++  L+++H  G+++RDLKP N+ V  D  + + DF L+   D
Sbjct: 122 KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD 177

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNA 64
Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           M  LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAE 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G+ + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+ ++ L  G  PF   +H L ++      +     EF 
Sbjct: 199 YVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS-NHGLAISPGMKTRIRMGQYEFP 257
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRRM 403
            P+   V    K LI  LL  +PT+RM
Sbjct: 258 NPEWSEVSEEVKMLIRNLLKTEPTQRM 284

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G+ + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDH 230

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NVL+
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVLI 164

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +   +++V ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 130 YLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLA 173

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 59
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             + P++   Y          +  E   GG L  + ++    R  E  +   +  V+  L
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGL 117
Query: 202 EFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 118 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 59
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             + P++   Y          +  E   GG L  + ++    R  E  +   +  V+  L
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGL 117
Query: 202 EFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 118 TYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 152

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNA 64
Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           M  LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAE 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-ER 137
           L + +L+ +  +G G+ G V L   +       C            +  +  ++A + E 
Sbjct: 9   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC------------IKNDATAQAFLAEA 56
Query: 138 EILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
            ++  L H  L  L   +   +    ++TE+   G L   LR R       +  ++F + 
Sbjct: 57  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SL 115
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
           +V  A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L    + P
Sbjct: 116 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP 174

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESRARIERE 138
           S++    R+GSG  G+VY    K K   +      KV+D   ++    RN+ +  R  R 
Sbjct: 36  SEVMLSTRIGSGSFGTVY----KGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRH 91
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +     +  L   Y T D      ++T++C G  L+     Q  K F    +   A +  
Sbjct: 92  V-----NILLFMGYMTKDNL---AIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTA 142
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTG 256
             +++LH   II+RD+K  N+ +     + + DF L+      + + Q+      PTG
Sbjct: 143 QGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQV----EQPTG 196

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           FV T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 187 FVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 232

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           RF  ++G G  G+VY     +     G   A + M+ ++     +  +  I  EIL M +
Sbjct: 25  RF-EKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKELIINEILVMRE 74
Query: 145 HPFLPTLYATLDC-----PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           +   P +   LD        W  ++ E+  GG L  V+ +   D    E  +     E +
Sbjct: 75  NKN-PNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETCMD----EGQIAAVCRECL 127
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            ALEFLH   +I+R++K +N+L+  DG + LTDF
Sbjct: 128 QALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDF 161

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
           P   +  + VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  
Sbjct: 169 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL 228
Query: 370 VVARAL-EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
           +      E      +    +D + + L  D  +R GS   A  + +HQF        L+ 
Sbjct: 229 IATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR-GS---AKELIQHQF--------LKI 276
Query: 429 AKP--PFIPRPVTCRDLTTTN 447
           AKP     P     ++ T  N
Sbjct: 277 AKPLSSLTPLIAAAKEATKNN 297

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-ER 137
           L + +L+ +  +G G+ G V L   +       C            +  +  ++A + E 
Sbjct: 18  LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC------------IKNDATAQAFLAEA 65
Query: 138 EILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
            ++  L H  L  L   +   +    ++TE+   G L   LR R       +  ++F + 
Sbjct: 66  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SL 124
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
           +V  A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L    + P
Sbjct: 125 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP 183

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DLR + +LG G  G V   +  + S       A K + K +++S+  E+     RE+  M
Sbjct: 13  DLRLLEKLGDGSFGVVRRGEWDAPSGKT-VSVAVKCL-KPDVLSQ-PEAMDDFIREVNAM 69
Query: 143 --LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
             LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V   
Sbjct: 70  HSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAEG 127
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
           + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 128 MGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 161

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-ER 137
           L + +L+ +  +G G+ G V L   +       C            +  +  ++A + E 
Sbjct: 3   LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKC------------IKNDATAQAFLAEA 50
Query: 138 EILEMLDHPFLPTLYATLDCPRWSC-LLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
            ++  L H  L  L   +   +    ++TE+   G L   LR R       +  ++F + 
Sbjct: 51  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-SL 109
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL-VSDQSPP 254
           +V  A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L V   +P 
Sbjct: 110 DVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPE 169
Query: 255 TGDQQPNDCAVDQPPFG 271
              ++      D   FG
Sbjct: 170 ALREKKFSTKSDVWSFG 186

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            SDLR    +G G  G+VY     ++   N    A K M      S  K      E   L
Sbjct: 17  FSDLR---EIGHGSFGAVYF----ARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69
Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLR-QRQPDKRFHESAVRFYASEVVV 199
           + L HP              + L+ E+C G    +L   ++P +    +AV   A +   
Sbjct: 70  QKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQ--- 126
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
            L +LH   +I+RD+K  N+L+   G + L DF
Sbjct: 127 GLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 159

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 7/155 (4%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DLR + +LG G  G   +V+     + +G   +  V   +  V    E+     RE+  
Sbjct: 8   KDLRLLEKLGDGSFG---VVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           M  LDH  L  LY  +  P    ++TE  P G L + R R+    F    +  YA +V  
Sbjct: 65  MHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSL-LDRLRKHQGHFLLGTLSRYAVQVAE 122
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            + +L     I+RDL   N+L+ +   + + DF L
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGL 157

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  +D++F   +G G+ G V    LK++   +G    A +   +E  S++       E E
Sbjct: 19  LDWNDIKFQDVIGEGNFGQV----LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELE 74
Query: 139 IL-EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQR---QPDKRF-------- 185
           +L ++  HP +  L    +   +  L  E+ P G+L   LR+    + D  F        
Sbjct: 75  VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 134
Query: 186 --HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                 +  +A++V   +++L     I+R+L   N+LV  +    + DF LS
Sbjct: 135 TLSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLS 186

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGII 210
           LYA   C     ++ E   GG+L    Q + D+ F E         +  A+++LH + I 
Sbjct: 127 LYAGRKC---LLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAIQYLHSINIA 183
Query: 211 YRDLKPENVLV---RSDGHIMLTDFDLS 235
           +RD+KPEN+L    R +  + LTDF  +
Sbjct: 184 HRDVKPENLLYTSKRPNAILKLTDFGFA 211

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-----NVVARALEF- 377
           Y+APE++  E +  + D W+LG+  + L  G  PF   +H L ++      +     EF 
Sbjct: 229 YVAPEVLGPEKYDKSCDXWSLGVIXYILLCGYPPFYS-NHGLAISPGXKTRIRXGQYEFP 287
Query: 378 -PKEPSVPGPAKDLIAQLLVKDPTRR 402
            P+   V    K LI  LL  +PT+R
Sbjct: 288 NPEWSEVSEEVKXLIRNLLKTEPTQR 313

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           ++ V +LG+G  G V++        NN    A K +    +  +     A +    ++ L
Sbjct: 14  IKLVKKLGAGQFGEVWM-----GYYNNSTKVAVKTLKPGTMSVQAFLEEANL----MKTL 64
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALE 202
            H  L  LYA +       ++TEF   G L   L+  +  K      + F ++++   + 
Sbjct: 65  QHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDF-SAQIAEGMA 123
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           ++     I+RDL+  NVLV       + DF L+   +++  TA+
Sbjct: 124 YIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAR 167

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-----VSRNKESRARIEREILEMLD 144
           LGSG  G V+    K K+         K + K ++     +   K  +  +E  IL  ++
Sbjct: 32  LGSGAFGFVWTAVDKEKNKE----VVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVE 87
Query: 145 HPFLPTLYATLDCPRWSCLLTE-FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
           H  +  +    +   +  L+ E    G DL     R P  R  E    +   ++V A+ +
Sbjct: 88  HANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGY 145
Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           L +  II+RD+K EN+++  D  I L DF
Sbjct: 146 LRLKDIIHRDIKDENIVIAEDFTIKLIDF 174

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      S    +G   A K +  R   S     R   E  +L+ + H    
Sbjct: 59  VGSGAYGSV----CSSYDVKSGLKIAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHE--- 110
Query: 150 TLYATLDCPRWSCLLTEF--------CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            +   LD    +  L EF          G DL+ + + Q   +  +  V+F   +++  L
Sbjct: 111 NVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGL 167
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           +++H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 168 KYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 209

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 33/177 (18%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--L 140
           D + +  +GSG  G V+    K+K   +G         K  ++ R K +  + ERE+  L
Sbjct: 12  DFKEIELIGSGGFGQVF----KAKHRIDG---------KTYVIKRVKYNNEKAEREVKAL 58
Query: 141 EMLDHPFLPTLYATLDC--------------PRWSCLLT--EFCPGGDLHVLRQRQPDKR 184
             LDH  +       D                +  CL    EFC  G L    +++  ++
Sbjct: 59  AKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEK 118
Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL--SLKGD 239
             +        ++   ++++H   +I RDLKP N+ +     + + DF L  SLK D
Sbjct: 119 LDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND 175

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A    R
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVAYQHVR 233
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQFFNGVNWALLRC 428
               P      G + DL   + + L K+P  R    ++M A  ++ H   NG        
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH---NG-------- 282
Query: 429 AKPPFIPRPVTCRDLTTTNSS 449
            +PP  P+ +T  + T+  SS
Sbjct: 283 -EPPEAPKVLTDAERTSLLSS 302

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A    R
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVAYQHVR 233
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQFFNGVNWALLRC 428
               P      G + DL   + + L K+P  R    ++M A  ++ H   NG        
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH---NG-------- 282
Query: 429 AKPPFIPRPVTCRDLTTTNSS 449
            +PP  P+ +T  + T+  SS
Sbjct: 283 -EPPEAPKVLTDAERTSLLSS 302

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A    R
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVAYQHVR 233
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQFFNGVNWALLRC 428
               P      G + DL   + + L K+P  R    ++M A  ++ H   NG        
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH---NG-------- 282
Query: 429 AKPPFIPRPVTCRDLTTTNSS 449
            +PP  P+ +T  + T+  SS
Sbjct: 283 -EPPEAPKVLTDAERTSLLSS 302

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM-------DKRELVSRNKES 131
           + +S ++    +G+G+ G V   +LK+      C  A K +        +RE +S     
Sbjct: 13  IDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCV-AIKTLKGGYTERQRREFLS----- 66
Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVR 191
               E  I+   +HP +  L   +       +LTEF   G L     R  D +F    + 
Sbjct: 67  ----EASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSF-LRLNDGQFTVIQLV 121
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                +   + +L  M  ++RDL   N+LV S+    ++DF LS
Sbjct: 122 GMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLS 165

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVSRNKESRARI----EREILEMLDHPFLPTL----YA 153
           +K   NG F   + AK+ D  ELV+  K  + +     E +I+  LDH  +  L    Y+
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYFFYS 84
Query: 154 TLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGII 210
           + +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI 
Sbjct: 85  SGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGIC 144
Query: 211 YRDLKPENVLVRSDGHIM-LTDF 232
           +RD+KP+N+L+  D  ++ L DF
Sbjct: 145 HRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD 239
           F E  +++   +++  L+++H  G+++RDLKP N+ V  D  + + DF L+   D
Sbjct: 141 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHAD 195

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           E  ++     ++V ++++H  GI++RDLKP N LV  D  + + DF L+           
Sbjct: 155 ELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLAR---------- 204
Query: 247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIP--NCIVPAVSCLHPKRRRKKKLGNPGTP 304
                             VD P  GNS   I      +  V+  H K  +++  G+    
Sbjct: 205 -----------------TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGH---- 243
Query: 305 EIVAEPLDVRSMSFVGTHEYLAPE-IISGEGHGNAVDWWTLGIFIFELF 352
                         V T  Y APE I+  E +  A+D W++G    EL 
Sbjct: 244 --------------VVTRWYRAPELILLQENYTEAIDVWSIGCIFAELL 278

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A    R
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVAYQHVR 233
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQFFNGVNWALLRC 428
               P      G + DL   + + L K+P  R    ++M A  ++ H   NG        
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH---NG-------- 282
Query: 429 AKPPFIPRPVTCRDLTTTNSS 449
            +PP  P+ +T  + T+  SS
Sbjct: 283 -EPPEAPKVLTDAERTSLLSS 302

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           ++ V RLG+G  G V++        NN    A K +    +  +     A +    ++ L
Sbjct: 15  IKLVKRLGAGQFGEVWM-----GYYNNSTKVAVKTLKPGTMSVQAFLEEANL----MKTL 65
Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALE 202
            H  L  LYA +       ++TE+   G L   L+  +  K      + F ++++   + 
Sbjct: 66  QHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDF-SAQIAEGMA 124
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           ++     I+RDL+  NVLV       + DF L+   +++  TA+
Sbjct: 125 YIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAR 168

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
           +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 133 IRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 109 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 163

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 109 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 163

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSGD G V   +L+     +    A K + K     R +      E  I+   DHP + 
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRD-VPVAIKAL-KAGYTERQRRDFLS-EASIMGQFDHPNII 113
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L   +   R + ++TE+   G L     R  D +F    +      V   + +L  +G 
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTF-LRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY 172
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++RDL   NVLV S+    ++DF LS
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLS 198

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 108 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 162

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD-KRELVSRNKESRARIEREILE 141
           D   +  LG+G+ G V+ V  K     +G   A K++  + +   RN+  R   E ++L 
Sbjct: 26  DFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLEIKPAIRNQIIR---ELQVLH 78
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQ--RQPDKRFHESAVRFYASEVV 198
             + P++   Y          +  E   GG L  VL++  R P++   + ++      V+
Sbjct: 79  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI-----AVI 133
Query: 199 VALEFL-HMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 134 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 171

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL 365
           +  + +D  + SFVGT  Y++PE + G  +    D W++G+ + E+  G  P       +
Sbjct: 170 VSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIGSGSGSM 229
Query: 366 TLANVVARALEFPKEPSVPGPA-----KDLIAQLLVKDPTRR 402
            +  ++   +  P  P +P        +D + + L+K+P  R
Sbjct: 230 AIFELLDYIVNEPP-PKLPSGVFSLEFQDFVNKCLIKNPAER 270

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSGD G V   +L+     +    A K + K     R +      E  I+   DHP + 
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRD-VPVAIKAL-KAGYTERQRRDFLS-EASIMGQFDHPNII 113
Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L   +   R + ++TE+   G L     R  D +F    +      V   + +L  +G 
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTF-LRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY 172
Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++RDL   NVLV S+    ++DF LS
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLS 198

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 111 GCFFAAKVMDKRELVSRNK----------ESRARIEREILEMLDHPFLPTLYATLDCPRW 160
           G  F AK  +  E+V+  +           S A  E  +L+ L H  +  L+  L   + 
Sbjct: 16  GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK 75
Query: 161 SCLLTEFCPGGDLHVLRQRQPDKRFHESA--------VRFYASEVVVALEFLHMMGIIYR 212
             L+ EFC           Q  K++ +S         V+ +  +++  L F H   +++R
Sbjct: 76  LTLVFEFCD----------QDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHR 125
Query: 213 DLKPENVLVRSDGHIMLTDFDLS 235
           DLKP+N+L+  +G + L +F L+
Sbjct: 126 DLKPQNLLINRNGELKLANFGLA 148

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 370 LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 419
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 420 ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 473
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 474 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMT 180

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
            L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP NV++
Sbjct: 110 ALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMI 164

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K            M + + +          E E++ 
Sbjct: 7   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---------EAEVMM 57
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 116
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 117 AYLEEASVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 371 LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 420
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 421 ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 474
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 475 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 530

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 4/157 (2%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + +S ++    +G+G+ G V   +LK+      C  A K +       + +E  +  E  
Sbjct: 11  IDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCV-AIKTLKGGYTERQRREFLS--EAS 67
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   +HP +  L   +       +LTEF   G L     R  D +F    +      + 
Sbjct: 68  IMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSF-LRLNDGQFTVIQLVGMLRGIA 126
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +L  M  ++RDL   N+LV S+    ++DF LS
Sbjct: 127 SGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLS 163

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G VY   + +         A K   K++    NKE +   E  I++ LDHP + 
Sbjct: 32  LGEGFFGEVY-EGVYTNHKGEKINVAVKTC-KKDCTLDNKE-KFMSEAVIMKNLDHPHIV 88
Query: 150 TLYATLDC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            L   ++  P W  ++ E  P G+L    +R  +       +  Y+ ++  A+ +L  + 
Sbjct: 89  KLIGIIEEEPTW--IIMELYPYGELGHYLERNKNS-LKVLTLVLYSLQICKAMAYLESIN 145
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++RD+   N+LV S   + L DF LS
Sbjct: 146 CVHRDIAVRNILVASPECVKLGDFGLS 172

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER--EILEMLDHPF 147
           LG G  G V  +Q+ +K +     FA K++       R  E   R  +   I+ ++D   
Sbjct: 26  LGLGINGKV--LQIFNKRTQEK--FALKMLQDCPKARREVELHWRASQCPHIVRIVD--V 79
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
              LYA   C     ++ E   GG+L    Q + D+ F E         +  A+++LH +
Sbjct: 80  YENLYAGRKC---LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI 136
Query: 208 GIIYRDLKPENVLV---RSDGHIMLTDFDLS 235
            I +RD+KPEN+L    R +  + LTDF  +
Sbjct: 137 NIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP 216
             R   L+ E     D   L Q   D       +RFY  E++ AL++ H MGI++RD+KP
Sbjct: 110 VSRTPALVFEHVNNTDFKQLYQTLTD-----YDIRFYMYEILKALDYCHSMGIMHRDVKP 164
Query: 217 ENVLV 221
            NV++
Sbjct: 165 HNVMI 169

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G VY   + +         A K   K++    NKE +   E  I++ LDHP + 
Sbjct: 20  LGEGFFGEVY-EGVYTNHKGEKINVAVKTC-KKDCTLDNKE-KFMSEAVIMKNLDHPHIV 76
Query: 150 TLYATLDC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            L   ++  P W  ++ E  P G+L    +R  +       +  Y+ ++  A+ +L  + 
Sbjct: 77  KLIGIIEEEPTW--IIMELYPYGELGHYLERNKNS-LKVLTLVLYSLQICKAMAYLESIN 133
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++RD+   N+LV S   + L DF LS
Sbjct: 134 CVHRDIAVRNILVASPECVKLGDFGLS 160

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G  G VY   + +         A K   K++    NKE +   E  I++ LDHP + 
Sbjct: 16  LGEGFFGEVY-EGVYTNHKGEKINVAVKTC-KKDCTLDNKE-KFMSEAVIMKNLDHPHIV 72
Query: 150 TLYATLDC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG 208
            L   ++  P W  ++ E  P G+L    +R  +       +  Y+ ++  A+ +L  + 
Sbjct: 73  KLIGIIEEEPTW--IIMELYPYGELGHYLERNKNS-LKVLTLVLYSLQICKAMAYLESIN 129
Query: 209 IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++RD+   N+LV S   + L DF LS
Sbjct: 130 CVHRDIAVRNILVASPECVKLGDFGLS 156

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 15/159 (9%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LE 141
           DL  +  LG G  G V     K +   +G   A K +  R  V+  ++ R   + +I   
Sbjct: 35  DLEPIXELGRGAYGVVE----KXRHVPSGQIXAVKRI--RATVNSQEQKRLLXDLDISXR 88
Query: 142 MLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDK--RFHESAVRFYASEV 197
            +D PF  T Y  L  +   W C          L    ++  DK     E  +   A  +
Sbjct: 89  TVDCPFTVTFYGALFREGDVWICXE---LXDTSLDKFYKQVIDKGQTIPEDILGKIAVSI 145
Query: 198 VVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           V ALE LH  + +I+RD+KP NVL+ + G +   DF +S
Sbjct: 146 VKALEHLHSKLSVIHRDVKPSNVLINALGQVKXCDFGIS 184

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           ++G G  G V+    K++    G     KV  K+ L+   KE     A  E +IL++L H
Sbjct: 25  KIGQGTFGEVF----KARHRKTG----QKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 146 PFLPTLYA---TLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
             +  L     T   P   C     L+ +FC   DL  L      K F  S ++     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVK-FTLSEIKRVMQML 134
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L ++H   I++RD+K  NVL+  DG + L DF L+
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           +LG G   +VY  + KSK ++N        ++  E         A  E  +L+ L H  +
Sbjct: 9   KLGEGTYATVY--KGKSKLTDNLVALKEIRLEHEE----GAPCTAIREVSLLKDLKHANI 62
Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPD--KRFHESAVRFYASEVVVALEFLHM 206
            TL+  +   +   L+ E+        L+Q   D     +   V+ +  +++  L + H 
Sbjct: 63  VTLHDIIHTEKSLTLVFEYLDKD----LKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHR 118
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +++RDLKP+N+L+   G + L DF L+
Sbjct: 119 QKVLHRDLKPQNLLINERGELKLADFGLA 147

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 104 LVTHLMGADLNNIVKSQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 160
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L    D+  +
Sbjct: 161 DSELKILDFGLCRHTDDEMT 180

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKXQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           ++G G  G V+    K++    G     KV  K+ L+   KE     A  E +IL++L H
Sbjct: 25  KIGQGTFGEVF----KARHRKTG----QKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 146 PFLPTLYA---TLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
             +  L     T   P   C     L+ +FC   DL  L      K F  S ++     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVK-FTLSEIKRVMQML 134
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L ++H   I++RD+K  NVL+  DG + L DF L+
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 28  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 77
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 78  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 131
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 132 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 187

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 28  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 77
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 78  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 131
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 132 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 187

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 26  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 75
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 76  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 129
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 130 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 185

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           ++G G  G V+    K++    G     KV  K+ L+   KE     A  E +IL++L H
Sbjct: 25  KIGQGTFGEVF----KARHRKTG----QKVALKKVLMENEKEGFPITALREIKILQLLKH 76
Query: 146 PFLPTLYA---TLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
             +  L     T   P   C     L+ +FC   DL  L      K F  S ++     +
Sbjct: 77  ENVVNLIEICRTKASPYNRCKASIYLVFDFCEH-DLAGLLSNVLVK-FTLSEIKRVMQML 134
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L ++H   I++RD+K  NVL+  DG + L DF L+
Sbjct: 135 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K            M + + +          E E++ 
Sbjct: 7   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---------EAEVMM 57
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 58  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 116
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 117 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 150

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 231

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 155 GIASGMKYLSDMGFVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K            M + + +          E E++ 
Sbjct: 10  SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---------EAEVMM 60
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 61  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 119
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 120 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 153

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 32  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 86
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 87  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 143
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 144 HSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMT 182

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 36  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 90
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 91  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 147
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 148 HSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMT 186

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 12  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 61
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 62  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 115
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 116 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKAQ 171

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 35  IGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 89
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 90  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 146
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 147 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMT 185

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K            M + + +          E E++ 
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE---------EAEVMM 55
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 114
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 115 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 148

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+ + RLG+G  G V++      + N     A K +    +   + ES    E +I++ L
Sbjct: 11  LQLIKRLGNGQFGEVWM-----GTWNGNTKVAIKTLKPGTM---SPESFLE-EAQIMKKL 61
Query: 144 DHPFLPTLYATL-DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            H  L  LYA + + P +  ++TE+   G L    +    +      +   A++V   + 
Sbjct: 62  KHDKLVQLYAVVSEEPIY--IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMA 119
Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-LKGDNSTSTAQ 246
           ++  M  I+RDL+  N+LV +     + DF L+ L  DN  +  Q
Sbjct: 120 YIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQ 164

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 84  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 142
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 143 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 182

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVSRNKESRARI----EREILEMLDHPFLPTL----YA 153
           +K   NG F   + AK+ D  ELV+  K  + +     E +I+  LDH  +  L    Y+
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYFFYS 84
Query: 154 TLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGII 210
           + +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI 
Sbjct: 85  SGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGIC 144
Query: 211 YRDLKPENVLVRSDGHIM-LTDF 232
           +RD+KP+N+L+  D  ++ L DF
Sbjct: 145 HRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVSRNKESRARI----EREILEMLDHPFLPTL----YA 153
           +K   NG F   + AK+ D  ELV+  K  + +     E +I+  LDH  +  L    Y+
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRYFFYS 84
Query: 154 TLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGII 210
           + +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI 
Sbjct: 85  SGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGIC 144
Query: 211 YRDLKPENVLVRSDGHIM-LTDF 232
           +RD+KP+N+L+  D  ++ L DF
Sbjct: 145 HRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3GNI|B Chain B, Structure Of Strad And Mo25 Length = 389

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  + ++ +HP +    AT        ++T F   G    L         +E A+ +   
Sbjct: 76  ELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQ 135
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD----- 250
            V+ AL+++H MG ++R +K  ++L+  DG + L+    +L   +     ++V D     
Sbjct: 136 GVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYS 195
Query: 251 ------QSPPTGDQ--QPNDCAVDQPPFGNSSCIIPNCIVP 283
                  SP    Q  Q  D   D    G ++C + N  VP
Sbjct: 196 VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP 236

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 67  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 125
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 126 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 165

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEMLDH 145
           ++G G  G V+    K++    G     KV  K+ L+   KE     A  E +IL++L H
Sbjct: 24  KIGQGTFGEVF----KARHRKTG----QKVALKKVLMENEKEGFPITALREIKILQLLKH 75
Query: 146 PFLPTLYA---TLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
             +  L     T   P   C     L+ +FC   DL  L      K F  S ++     +
Sbjct: 76  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVK-FTLSEIKRVMQML 133
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +  L ++H   I++RD+K  NVL+  DG + L DF L+
Sbjct: 134 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA 171

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 12  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 61
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 62  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 115
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 116 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 171

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 172 DLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT 230
           DLH ++   QP    H   VR++  +++  L+++H   +I+RDLKP N+LV  +  + + 
Sbjct: 145 DLHQIIHSSQPLTLEH---VRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIG 201
Query: 231 DFDLS 235
           DF ++
Sbjct: 202 DFGMA 206

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 155 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  + ++ +HP +    AT        ++T F   G    L         +E A+ +   
Sbjct: 60  ELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQ 119
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD----- 250
            V+ AL+++H MG ++R +K  ++L+  DG + L+    +L   +     ++V D     
Sbjct: 120 GVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYS 179
Query: 251 ------QSPPTGDQ--QPNDCAVDQPPFGNSSCIIPNCIVP 283
                  SP    Q  Q  D   D    G ++C + N  VP
Sbjct: 180 VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP 220

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 18  LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 67
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 68  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 121
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 122 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 177

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 155 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 155 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 85  RFVHRLGSGDIGSVYLVQ---LKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-- 139
           + V +LG G + +VYL +   L  K +    F   +           +E+  R ERE+  
Sbjct: 14  KIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPR---------EKEETLKRFEREVHN 64
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
              L H  + ++    +      L+ E+  G  L   +    P     ++A+ F  ++++
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSV--DTAINF-TNQIL 121
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
             ++  H M I++RD+KP+N+L+ S+  + + DF ++ K  + TS  Q
Sbjct: 122 DGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIA-KALSETSLTQ 168

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P    D   ++ +G+G  G    ++ KS    +G     K +D   +    K+     E 
Sbjct: 2   PSRAEDYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQMLVS-EV 56
Query: 138 EILEMLDHPFLPTLY-ATLDCPRWSC-LLTEFCPGGDLHVLRQRQPDKR--FHESAVRFY 193
            +L  L HP +   Y   +D    +  ++ E+C GGDL  +  +   +R    E  V   
Sbjct: 57  NLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRV 116
Query: 194 ASEVVVALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++ +AL+  H        +++RDLKP NV +    ++ L DF L+
Sbjct: 117 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 163

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 155 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 194

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 6   LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 55
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 56  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 109
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 110 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 165

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 94  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 152
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 153 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 192

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 35  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 89
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 90  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 146
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 147 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMT 185

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 41  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 95
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 96  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 152
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 153 HSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMT 191

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 53  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 111
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 112 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 171
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 172 CHRDIKPQNLLLDPDTAVLKLCDF 195

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 63  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 121
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 122 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 181
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 182 CHRDIKPQNLLLDPDTAVLKLCDF 205

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)
Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
            R+GSG  G+VY    K K   +    A K+++      +  ++  + E  +L    H  
Sbjct: 30  QRIGSGSFGTVY----KGKWHGD---VAVKMLNVTAPTPQQLQA-FKNEVGVLRKTRHVN 81
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF-------YASEVVVA 200
           +         P+ + ++T++C G  L+           H S  +F        A +    
Sbjct: 82  ILLFMGYSTAPQLA-IVTQWCEGSSLY--------HHLHASETKFEMKKLIDIARQTARG 132
Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
           +++LH   II+RDLK  N+ +  D  + + DF L+ +    + + Q 
Sbjct: 133 MDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 61  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 119
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 120 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 179
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 180 CHRDIKPQNLLLDPDTAVLKLCDF 203

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 59  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 117
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 118 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 177
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 178 CHRDIKPQNLLLDPDTAVLKLCDF 201

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 104 TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 162
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 163 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 222
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 223 CHRDIKPQNLLLDPDTAVLKLCDF 246

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 30  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 88
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 89  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 148
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 149 CHRDIKPQNLLLDPDTAVLKLCDF 172

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 27  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 81
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 82  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 138
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 139 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 177

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L    +K          KV  K        E     E E++ 
Sbjct: 27  SELTFVQEIGSGQFGLVHLGYWLNKD---------KVAIKTIKEGSMSEDDFIEEAEVMM 77
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 78  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 136
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 137 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 170

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 79  LTLSDLRFVHRLGSGDIGSV---YLVQLKSKSSNNGCFFAAKVMD---KRELVSRNKESR 132
           LTL D      LGSG+ G+V   Y    K   +        +  D   K EL++      
Sbjct: 8   LTLED----KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLA------ 57
Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E  +++ LD+P++  +    +   W  L+ E    G L+  +  Q ++   +  +  
Sbjct: 58  ---EANVMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLN--KYLQQNRHVKDKNIIE 111
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
              +V + +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 112 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 167

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGT 355
           KL + G    +A P +V     V T  Y APE++ G+  +G AVD W +G  + E+F G 
Sbjct: 164 KLCDFGFARTLAAPGEVYDDE-VATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGE 222
Query: 356 TPFKG---IDH----ELTLANVVARALE-FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM 407
             F G   ID      + L N++ R  E F K P   G     + ++  ++P  R   K+
Sbjct: 223 PLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVR---LPEIKEREPLERRYPKL 279
Query: 408 GATAI 412
               I
Sbjct: 280 SEVVI 284

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 59  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 117
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 118 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 177
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 178 CHRDIKPQNLLLDPDTAVLKLCDF 201

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 28  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 82
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 83  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 139
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 140 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 178

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 26  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 80
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 81  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 137
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 138 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 176

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L   DL    ++G G+ G V+  +L++ ++         V   RE +  + +++   E  
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNT------LVAVKSCRETLPPDLKAKFLQEAR 164
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           IL+   HP +  L       +   ++ E   GGD      R    R     +     +  
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL-RTEGARLRVKTLLQMVGDAA 223
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
             +E+L     I+RDL   N LV     + ++DF +S +  +    A
Sbjct: 224 AGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAA 270

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 18/141 (12%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D   ++A    R
Sbjct: 175 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPDSVAYQHVR 233
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQFFNGVNWALLRC 428
               P      G + DL   + + L K+P  R    ++M A  ++ H   NG        
Sbjct: 234 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH---NG-------- 282
Query: 429 AKPPFIPRPVTCRDLTTTNSS 449
            +PP  P+ +T  + T+  SS
Sbjct: 283 -EPPEAPKVLTDAERTSLLSS 302

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 38  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 96
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 97  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 156
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 157 CHRDIKPQNLLLDPDTAVLKLCDF 180

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 32  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 86
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 87  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 143
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 144 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 182

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR-IEREIL--EMLDHP 146
           +G G  G VY  +   +        A +++D    + R+ E + +  +RE++      H 
Sbjct: 41  IGKGRFGQVYHGRWHGE-------VAIRLID----IERDNEDQLKAFKREVMAYRQTRHE 89
Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +         P    ++T  C G  L+ +  R        +  R  A E+V  + +LH 
Sbjct: 90  NVVLFMGACMSPPHLAIITSLCKGRTLYSV-VRDAKIVLDVNKTRQIAQEIVKGMGYLHA 148
Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            GI+++DLK +NV    +G +++TDF L
Sbjct: 149 KGILHKDLKSKNVFY-DNGKVVITDFGL 175

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 33  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 91
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 92  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 151
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 152 CHRDIKPQNLLLDPDTAVLKLCDF 175

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 37  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 95
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 96  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 155
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 156 CHRDIKPQNLLLDPDTAVLKLCDF 179

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 27  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 81
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 82  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 138
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 139 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 177

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 44  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 102
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 103 SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 162
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 163 CHRDIKPQNLLLDPDTAVLKLCDF 186

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 32  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 86
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 87  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 143
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 144 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 182

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 37  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 95
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 96  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 155
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 156 CHRDIKPQNLLLDPDTAVLKLCDF 179

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 50  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 104
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 105 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 161
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 162 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 200

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 49  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 103
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 104 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 160
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 161 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 199

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI--EREILEMLDHPF 147
           +G+G+ G VY   LK+ S       A K +         ++ R     E  I+    H  
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK----AGYTEKQRVDFLGEAGIMGQFSHHN 107
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +  L   +   +   ++TE+   G L     R+ D  F    +      +   +++L  M
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGALDKF-LREKDGEFSVLQLVGMLRGIAAGMKYLANM 166
Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             ++RDL   N+LV S+    ++DF LS
Sbjct: 167 NYVHRDLAARNILVNSNLVCKVSDFGLS 194

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 35  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 89
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 90  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 146
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 147 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 185

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK--RELVSRNKESRARIEREILEMLDHPF 147
           +GSG  GSV      +  +  G   A K + K  + ++   +  R       L +L H  
Sbjct: 42  VGSGAYGSV----CAAFDTKTGLRVAVKKLSKPFQSIIHAKRTYRE------LRLLKHMK 91
Query: 148 LPTLYATLDCPRWSCLLTEF--------CPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              +   LD    +  L EF          G DL+ + + Q   +  +  V+F   +++ 
Sbjct: 92  HENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILR 148
Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
            L+++H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 149 GLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 192

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 29  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 83
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 84  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 140
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 141 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 179

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 46/167 (27%)
Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
           E  V+     +++  +F+H  GII+RDLKP N L+  D  + + DF L+ +  NS     
Sbjct: 130 EQHVKTILYNLLLGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLA-RTINSDKDIH 188
Query: 247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI 306
           +V+D      +++P                             P  +  KK         
Sbjct: 189 IVNDLEEKEENEEPG----------------------------PHNKNLKK--------- 211
Query: 307 VAEPLDVRSMSFVGTHEYLAPE-IISGEGHGNAVDWWTLGIFIFELF 352
                  +  S V T  Y APE I+  E + N++D W+ G    EL 
Sbjct: 212 -------QLTSHVVTRWYRAPELILLQENYTNSIDIWSTGCIFAELL 251

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 172 DLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT 230
           DLH ++   QP    H   VR++  +++  L+++H   +I+RDLKP N+LV  +  + + 
Sbjct: 144 DLHQIIHSSQPLTLEH---VRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIG 200
Query: 231 DFDLS 235
           DF ++
Sbjct: 201 DFGMA 205

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 29  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 87
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 88  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 147
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 148 CHRDIKPQNLLLDPDTAVLKLCDF 171

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 120 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 176
Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 177 LDFGLARHTDDEMT 190

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 7/157 (4%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L   DL    ++G G+ G V+  +L++ ++         V   RE +  + +++   E  
Sbjct: 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNT------LVAVKSCRETLPPDLKAKFLQEAR 164
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           IL+   HP +  L       +   ++ E   GGD      R    R     +     +  
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFL-RTEGARLRVKTLLQMVGDAA 223
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +E+L     I+RDL   N LV     + ++DF +S
Sbjct: 224 AGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMS 260

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 37  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 91
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 92  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 148
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 149 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 187

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 83
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 84  SSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 143
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 36  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 90
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 91  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 147
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 148 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 186

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 30  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 84
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 85  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 141
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 142 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 180

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 40/175 (22%)
Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD------KRELVSRNKESRARIERE--I 139
            R+GSG  G+VY    K K   +    A K+++      ++    +N+    R  R   I
Sbjct: 30  QRIGSGSFGTVY----KGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 82
Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF------- 192
           L  + +   P L           ++T++C G  L+           H S  +F       
Sbjct: 83  LLFMGYSTKPQL----------AIVTQWCEGSSLY--------HHLHASETKFEMKKLID 124
Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
            A +    +++LH   II+RDLK  N+ +  D  + + DF L+ +    + + Q 
Sbjct: 125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 83
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 143
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 83
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 143
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 32  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 86
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 87  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 143
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 144 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 182

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 100 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 156
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L+   D+  +
Sbjct: 157 DCELKILDFGLARHTDDEMT 176

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 25  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 83
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 84  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 143
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDF 167

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 110 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 166
Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 167 LDFGLARHTDDEMT 180

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 35  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 89
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 90  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 146
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 147 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 185

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 121 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 177
Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 178 LDFGLARHTDDEMT 191

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 42  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 96
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 97  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 153
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 154 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 192

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 17/167 (10%)
Query: 83  DLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           D+     LG G  G V+L +  +     +    A K + +    +R    R   E E+L 
Sbjct: 42  DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR---EAELLT 98
Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESA----------- 189
           ML H  +   +      R   ++ E+   GDL+  LR   PD +                
Sbjct: 99  MLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLG 158
Query: 190 -VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   AS+V   + +L  +  ++RDL   N LV     + + DF +S
Sbjct: 159 QLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 53  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 107
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 108 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 164
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 165 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 203

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 42  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 96
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 97  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 153
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 154 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 192

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 100 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 156
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L+   D+  +
Sbjct: 157 DCELKILDFGLARHTDDEMA 176

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDH 363
           +A   D     FV T  Y APEI+    H N  VD W++G  + EL  G T F G DH
Sbjct: 167 LARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 224

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 110 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 166
Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 167 LDFGLARHTDDEMA 180

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDH 363
           +A   D     FV T  Y APEI+    H N  VD W++G  + EL  G T F G DH
Sbjct: 171 LARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 228

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +GSG  GSV      +  +  G   A K +  R   S     R   E  +L+ + H  + 
Sbjct: 36  VGSGAYGSV----CAAFDTKTGLRVAVKKL-SRPFQSIIHAKRTYRELRLLKHMKHENVI 90
Query: 150 TLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
            L       R         L     G DL+ + + Q   +  +  V+F   +++  L+++
Sbjct: 91  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI 147
Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           H   II+RDLKP N+ V  D  + + DF L+   D+  +
Sbjct: 148 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT 186

>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396 Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           ++   + ++GSG+ GSV+    K     +GC +A K   K+ L     E  A  E     
Sbjct: 9   TEFHELEKIGSGEFGSVF----KCVKRLDGCIYAIK-RSKKPLAGSVDEQNALREVYAHA 63
Query: 142 ML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFHESAVRFYASEVV 198
           +L  H  +   ++         +  E+C GG L   +    +    F E+ ++    +V 
Sbjct: 64  VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVG 123
Query: 199 VALEFLHMMGIIYRDLKPENVLV 221
             L ++H M +++ D+KP N+ +
Sbjct: 124 RGLRYIHSMSLVHMDIKPSNIFI 146

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 123 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 179
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L+   D+  +
Sbjct: 180 DCELKILDFGLARHTDDEMT 199

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 105 SKSSNNGCF---FAAKVMDKRELVS-----RNKESRARIEREILEMLDHPFLPTL----Y 152
           +K   NG F   + AK+ D  ELV+     ++K  + R E +I+  LDH  +  L    Y
Sbjct: 26  TKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR-ELQIMRKLDHCNIVRLRYFFY 84
Query: 153 ATLDCPR--WSCLLTEFCPGGDLHVLRQRQPDKR-FHESAVRFYASEVVVALEFLHMMGI 209
           ++ +     +  L+ ++ P     V R     K+      V+ Y  ++  +L ++H  GI
Sbjct: 85  SSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGI 144
Query: 210 IYRDLKPENVLVRSDGHIM-LTDF 232
            +RD+KP+N+L+  D  ++ L DF
Sbjct: 145 CHRDIKPQNLLLDPDTAVLKLCDF 168

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 4/165 (2%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           + +S ++    +G+G+ G V    LK        F A K +       + ++  +  E  
Sbjct: 4   IDISCVKIEQVIGAGEFGEVCSGHLKLPGKRE-IFVAIKTLKSGYTEKQRRDFLS--EAS 60
Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           I+   DHP +  L   +       ++TEF   G L     RQ D +F    +      + 
Sbjct: 61  IMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFL-RQNDGQFTVIQLVGMLRGIA 119
Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
             +++L  M  ++R L   N+LV S+    ++DF LS   ++ TS
Sbjct: 120 AGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTS 164

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 110 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 166
Query: 230 TDFDLSLKGDNSTS 243
            DF L+   D+  +
Sbjct: 167 LDFGLARHTDDEMA 180

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGN-AVDWWTLGIFIFELFYGTTPFKGIDH 363
           +A   D     FV T  Y APEI+    H N  VD W++G  + EL  G T F G DH
Sbjct: 171 LARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 228

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 90  LGSGDIGSVY--LVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF 147
           LG G+ GSV   + +++ K  +     A KV+ K+     + E   R E +I+  LD+P+
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQID----VAIKVL-KQGTEKADTEEMMR-EAQIMHQLDNPY 71
Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVL----RQRQPDKRFHESAVRFYASEVVVALEF 203
           +  L           L+ E   GG LH      R+  P      S V     +V + +++
Sbjct: 72  IVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIP-----VSNVAELLHQVSMGMKY 125
Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
           L     ++RDL   NVL+ +  +  ++DF LS  L  D+S  TA+
Sbjct: 126 LEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 170

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 124 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 180
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L+   D+  +
Sbjct: 181 DCELKILDFGLARHTDDEMT 200

>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed With Inhibitor Pd0407824 Length = 289

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DH 145
           + ++GSG+ GSV+    K     +GC +A K   K+ L     E  A  E     +L  H
Sbjct: 16  LEKIGSGEFGSVF----KCVKRLDGCIYAIK-RSKKPLAGSVDEQNALREVYAHAVLGQH 70
Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFHESAVRFYASEVVVALEF 203
             +   ++         +  E+C GG L   +    +    F E+ ++    +V   L +
Sbjct: 71  SHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRY 130
Query: 204 LHMMGIIYRDLKPENVLV 221
           +H M +++ D+KP N+ +
Sbjct: 131 IHSMSLVHMDIKPSNIFI 148

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L    ++  D +F    +     
Sbjct: 73  EASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKN-DGQFTVIQLVGMLR 131
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF LS
Sbjct: 132 GISAGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLS 171

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
           V T  Y APE+I G G+   VD W++G  + E+  G   F G DH
Sbjct: 186 VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH 230

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G VY  Q     +N G  FA K + + E       S    E  IL+ L H 
Sbjct: 7   LEKIGEGTYGVVYKAQ-----NNYGETFALKKI-RLEKEDEGIPSTTIREISILKELKHS 60
Query: 147 FLPTLYATLDCPRWSCL-----------LTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
            +  LY  +   +   L           L + C GG                   + +  
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAKSFLL 107
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  + + H   +++RDLKP+N+L+  +G + + DF L+
Sbjct: 108 QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G VY  Q     +N G  FA K + + E       S    E  IL+ L H 
Sbjct: 7   LEKIGEGTYGVVYKAQ-----NNYGETFALKKI-RLEKEDEGIPSTTIREISILKELKHS 60
Query: 147 FLPTLYATLDCPRWSCL-----------LTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
            +  LY  +   +   L           L + C GG                   + +  
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAKSFLL 107
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  + + H   +++RDLKP+N+L+  +G + + DF L+
Sbjct: 108 QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP 146
           + ++G G  G VY  Q     +N G  FA K + + E       S    E  IL+ L H 
Sbjct: 7   LEKIGEGTYGVVYKAQ-----NNYGETFALKKI-RLEKEDEGIPSTTIREISILKELKHS 60
Query: 147 FLPTLYATLDCPRWSCL-----------LTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
            +  LY  +   +   L           L + C GG                   + +  
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGG-------------LESVTAKSFLL 107
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  + + H   +++RDLKP+N+L+  +G + + DF L+
Sbjct: 108 QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839 Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           ++   + ++GSG+ GSV+    K     +GC +A K   K+ L     E  A  E     
Sbjct: 9   TEFHELEKIGSGEFGSVF----KCVKRLDGCIYAIK-RSKKPLAGSVDEQNALREVYAHA 63
Query: 142 ML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFHESAVRFYASEVV 198
           +L  H  +   ++         +  E+C GG L   +    +    F E+ ++    +V 
Sbjct: 64  VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVG 123
Query: 199 VALEFLHMMGIIYRDLKPENVLV 221
             L ++H M +++ D+KP N+ +
Sbjct: 124 RGLRYIHSMSLVHMDIKPSNIFI 146

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS 223
           L     G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  
Sbjct: 110 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 166
Query: 224 DGHIMLTDFDLSLKGDNSTS 243
           D  + + DF L+   D+  +
Sbjct: 167 DCELKILDFGLARHTDDEMT 186

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 136 EREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           E  I+   DHP +  L   +   +   ++TE+   G L     R+ D +F    +     
Sbjct: 96  EASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF-LRKHDAQFTVIQLVGMLR 154
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +   +++L  MG ++RDL   N+L+ S+    ++DF L+
Sbjct: 155 GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLA 194

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 172 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 211

>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770 Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DH 145
           + ++GSG+ GSV+    K     +GC +A K   K+ L     E  A  E     +L  H
Sbjct: 12  LEKIGSGEFGSVF----KCVKRLDGCIYAIK-RSKKPLAGSVDEQNALREVYAHAVLGQH 66
Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDLH--VLRQRQPDKRFHESAVRFYASEVVVALEF 203
             +   ++         +  E+C GG L   +    +    F E+ ++    +V   L +
Sbjct: 67  SHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRY 126
Query: 204 LHMMGIIYRDLKPENVLV 221
           +H M +++ D+KP N+ +
Sbjct: 127 IHSMSLVHMDIKPSNIFI 144

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+ +  LG G  G V L      +   G   A K +  +        S  + E +IL  L
Sbjct: 33  LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKAL--KADAGPQHRSGWKQEIDILRTL 90
Query: 144 DHPFLPTLYATLDCPRWSCL--LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            H  +       +    + L  + E+ P G L   R   P      + +  +A ++   +
Sbjct: 91  YHEHIIKYKGCCEDAGAASLQLVMEYVPLGSL---RDYLPRHSIGLAQLLLFAQQICEGM 147
Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +LH    I+RDL   NVL+ +D  + + DF L+
Sbjct: 148 AYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +   +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 123 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 166

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 170 GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G DL+ + + Q   +  +  V+F   +++  L+++H   II+RDLKP N+ V  D  + +
Sbjct: 133 GADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKI 189
Query: 230 TDFDLSLKGDN 240
            DF L+   D+
Sbjct: 190 LDFGLARHTDD 200

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           ++ + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A    R
Sbjct: 192 QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVAYQHVR 250
Query: 374 ALEFPKEPSVPGPAKDL---IAQLLVKDPTRR--MGSKMGATAIKRHQ 416
               P      G + DL   + + L K+P  R    ++M A  ++ H 
Sbjct: 251 EDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 298

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +   +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 130 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +   +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 130 YLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLA 173

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-ER 137
           L  S ++    +G+G+ G V   +LK     +     A  +   ++    K+ R  + E 
Sbjct: 40  LDASCIKIERVIGAGEFGEVCSGRLKLPGKRD----VAVAIKTLKVGYTEKQRRDFLCEA 95
Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
            I+   DHP +  L   +   +   ++ EF   G L     R+ D +F    +      +
Sbjct: 96  SIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAF-LRKHDGQFTVIQLVGMLRGI 154
Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              + +L  MG ++RDL   N+LV S+    ++DF LS
Sbjct: 155 AAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLS 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-100
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	9e-93
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-89
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-86
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-81
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	7e-66
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	5e-65
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-55
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	7e-54
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	6e-53
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	9e-42
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	5e-51
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-42
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-50
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-40
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-50
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-41
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-49
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-37
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-49
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	9e-39
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-48
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-35
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-48
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-39
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-48
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	1e-34
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-48
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-38
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	6e-48
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-38
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	6e-48
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	9e-36
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-47
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-47
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-37
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-47
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-39
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	1e-46
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-41
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-46
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-45
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-38
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-45
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-45
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	4e-45
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	3e-44
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-36
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	8e-44
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-43
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-43
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-42
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-42
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	7e-42
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-41
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-41
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-41
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-40
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-40
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-40
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-39
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-38
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-38
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-36
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-36
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-35
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-35
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	3e-34
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-33
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	6e-33
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-32
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-32
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-31
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	7e-15
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	9e-31
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-29
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	7e-29
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	9e-29
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-28
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-28
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-28
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-28
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-14
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-28
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-18
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-28
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-19
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-28
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	7e-28
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-19
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	7e-28
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-19
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-28
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-22
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-27
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-27
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-16
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-26
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-26
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-15
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-26
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-18
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-26
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-14
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-25
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-25
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-13
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-25
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-15
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-25
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-14
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-25
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	7e-16
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-25
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-25
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-17
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-25
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	9e-25
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-24
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-24
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-20
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-24
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	8e-18
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-24
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-13
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	9e-24
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	5e-17
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-23
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-23
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-23
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	4e-15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-23
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-17
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	4e-22
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	9e-22
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	8e-16
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-21
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-14
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-21
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-11
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-21
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-21
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-21
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-06
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-21
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-21
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-21
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	9e-16
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-21
3an0_A	340	Dual specificity mitogen-activated protein kinase;	5e-09
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-21
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-21
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-08
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-21
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	9e-21
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-20
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	6e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-20
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-20
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-13
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-20
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-20
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-11
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-20
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-13
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-20
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-12
3q4u_A	301	Activin receptor type-1; structural genomics conso	4e-20
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	7e-20
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-19
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-16
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-19
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-19
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-06
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-18
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-18
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-06
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-17
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	9e-09
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-17
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-17
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-16
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-08
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-16
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-13
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-16
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-16
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-16
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-16
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	6e-16
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-09
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-14
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	6e-08
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-14
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-14
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-13
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-13
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-13
3uqc_A	286	Probable conserved transmembrane protein; structur	2e-06
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-13
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-13
3ork_A	311	Serine/threonine protein kinase; structural genomi	5e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-13
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-13
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	5e-13
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	5e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-13
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	8e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	9e-13
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-12
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-12
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-12
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-12
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-12
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	3e-12
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-12
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-12
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-12
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	9e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-11
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-11
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-11
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	3e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-11
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-11
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-11
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-11
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	6e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	7e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	7e-11
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-11
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	8e-11
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-10
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-10
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-10
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-10
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-10
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-10
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-10
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-10
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-10
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-10
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	4e-10
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	4e-10
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	6e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-04
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-09
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-09
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-09
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-04
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-09
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	2e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-04
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-09
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-09
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-09
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	7e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-09
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	8e-05
3o0g_A	292	Cell division protein kinase 5; kinase activator c	4e-09
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	4e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-04
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	9e-09
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	1e-08
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-08
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-08
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	5e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-08
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-04
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-05
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	5e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-04

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  302 bits (775), Expect = e-100
 Identities = 96/375 (25%), Positives = 149/375 (39%), Gaps = 82/375 (21%)

Query: 65  EATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL 124
            +                D +F   LG G   +V L +  +        +A K+++KR +
Sbjct: 13  GSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELA----TSREYAIKILEKRHI 68

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR 184
           +  NK      ER+++  LDHPF   LY T            +   G+L  L+  +    
Sbjct: 69  IKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGEL--LKYIRKIGS 126

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNST 242
           F E+  RFY +E+V ALE+LH  GII+RDLKPEN+L+  D HI +TDF  +  L  ++  
Sbjct: 127 FDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ 186

Query: 243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG 302
           + A                          NS                            G
Sbjct: 187 ARA--------------------------NSFV--------------------------G 194

Query: 303 TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID 362
           T +                  Y++PE+++ +    + D W LG  I++L  G  PF+  +
Sbjct: 195 TAQ------------------YVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN 236

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM--GATAIKRHQFFNG 420
             L    ++    +FP        A+DL+ +LLV D T+R+G +   G   +K H FF  
Sbjct: 237 EYLIFQKIIKLEYDFP--EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFES 294

Query: 421 VNWALLRCAKPPFIP 435
           V W  L    PP + 
Sbjct: 295 VTWENLHQQTPPKLT 309

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  285 bits (732), Expect = 9e-93
 Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 88/374 (23%)

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES 131
           N   +  +   D   V  +G G  G V LV+ K    +    +A K++ K E++ R+  +
Sbjct: 59  NKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSA 114

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAV 190
               ER+I+   + P++  L+      R+  ++ E+ PGGDL +++          E   
Sbjct: 115 FFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNY----DVPEKWA 170

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD 250
           RFY +EVV+AL+ +H MG I+RD+KP+N+L+   GH+ L DF   +K +           
Sbjct: 171 RFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC---- 226

Query: 251 QSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP 310
                                +++                           GTP+     
Sbjct: 227 ---------------------DTAV--------------------------GTPD----- 234

Query: 311 LDVRSMSFVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
                        Y++PE++  +G    +G   DWW++G+F++E+  G TPF       T
Sbjct: 235 -------------YISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT 281

Query: 367 LANVVA--RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA 424
            + ++    +L FP +  +   AK+LI   L  D   R+G   G   IKRH FF    WA
Sbjct: 282 YSKIMNHKNSLTFPDDNDISKEAKNLICAFL-TDREVRLGRN-GVEEIKRHLFFKNDQWA 339

Query: 425 LL--RCAKPPFIPR 436
               R    P +P 
Sbjct: 340 WETLRDTVAPVVPD 353

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  277 bits (711), Expect = 1e-89
 Identities = 100/382 (26%), Positives = 153/382 (40%), Gaps = 86/382 (22%)

Query: 65  EATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL 124
           +             L   D   +  +G G    V +V++K      G  +A K+M+K ++
Sbjct: 44  QWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQ----TGQVYAMKIMNKWDM 99

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR 184
           + R + S  R ER++L   D  ++  L+       +  L+ E+  GGDL  L  +   +R
Sbjct: 100 LKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKF-GER 158

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
                 RFY +E+V+A++ +H +G ++RD+KP+N+L+   GHI L DF   LK     + 
Sbjct: 159 IPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV 218

Query: 245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP 304
                                        +                           GTP
Sbjct: 219 RS-------------------------LVAV--------------------------GTP 227

Query: 305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEG-------HGNAVDWWTLGIFIFELFYGTTP 357
           +                  YL+PEI+   G       +G   DWW LG+F +E+FYG TP
Sbjct: 228 D------------------YLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTP 269

Query: 358 FKGIDHELTLANVVAR--ALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR 414
           F       T   +V     L  P     VP  A+D I +LL   P  R+G   GA   + 
Sbjct: 270 FYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLL-CPPETRLGRG-GAGDFRT 327

Query: 415 HQFFNGVNWALLRCAKPPFIPR 436
           H FF G++W  LR + PPF P 
Sbjct: 328 HPFFFGLDWDGLRDSVPPFTPD 349

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  266 bits (683), Expect = 3e-86
 Identities = 113/418 (27%), Positives = 174/418 (41%), Gaps = 95/418 (22%)

Query: 35  SNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGD 94
            +      S      +    +       +K      N   +   + + +   +  LG+G 
Sbjct: 7   HHEEEGGSSGGAAGTSADGGDGGEQLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGA 66

Query: 95  IGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE-SRARIEREILEMLDH-PFLPTLY 152
            G V+LV+ K    + G  +A KV+ K  +V + K     R ER++LE +   PFL TL+
Sbjct: 67  YGKVFLVR-KISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH 125

Query: 153 ATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGII 210
                     L+ ++  GG+L  H+ ++     RF E  V+ Y  E+V+ALE LH +GII
Sbjct: 126 YAFQTETKLHLILDYINGGELFTHLSQRE----RFTEHEVQIYVGEIVLALEHLHKLGII 181

Query: 211 YRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
           YRD+K EN+L+ S+GH++LTDF LS   +  +   +                        
Sbjct: 182 YRDIKLENILLDSNGHVVLTDFGLSKEFVADETERA------------------------ 217

Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
                  C                          GT E                  Y+AP
Sbjct: 218 ----YDFC--------------------------GTIE------------------YMAP 229

Query: 328 EIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA----NVVARALEFPKEP 381
           +I+ G   GH  AVDWW+LG+ ++EL  G +PF     + + A     ++     +P   
Sbjct: 230 DIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP--Q 287

Query: 382 SVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAKPPFIPR 436
            +   AKDLI +LL+KDP +R+G     A  IK H FF  +NW  L  +    PF P 
Sbjct: 288 EMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPV 345

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  264 bits (676), Expect = 3e-81
 Identities = 91/377 (24%), Positives = 150/377 (39%), Gaps = 90/377 (23%)

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE 130
            N   N  LT++D      +G G  G VY  +      + G  +A K +DK+ +  +  E
Sbjct: 178 KNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGE 233

Query: 131 SRARIEREILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHE 187
           + A  ER +L ++   D PF+  +      P     + +   GGDLH    +     F E
Sbjct: 234 TLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSE 291

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
           + +RFYA+E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+            
Sbjct: 292 ADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP---- 347

Query: 248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV 307
                                   ++S                           GT    
Sbjct: 348 ------------------------HASV--------------------------GTHG-- 355

Query: 308 AEPLDVRSMSFVGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPF---KGIDH 363
                           Y+APE++  G  + ++ DW++LG  +F+L  G +PF   K  D 
Sbjct: 356 ----------------YMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK 399

Query: 364 ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVN 422
                  +  A+E P   S     + L+  LL +D  RR+G    GA  +K   FF  ++
Sbjct: 400 HEIDRMTLTMAVELP--DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLD 457

Query: 423 WALL--RCAKPPFIPRP 437
           W ++  +   PP IP  
Sbjct: 458 WQMVFLQKYPPPLIPPR 474

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  212 bits (541), Expect = 7e-66
 Identities = 84/355 (23%), Positives = 126/355 (35%), Gaps = 84/355 (23%)

Query: 74  NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA 133
           +      L D      LG G  G+VYL + K     +    A KV+ K +L     E + 
Sbjct: 1   SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQ----SKFILALKVLFKAQLEKAGVEHQL 56

Query: 134 RIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
           R E EI   L HP +  LY          L+ E+ P G ++   Q+    +F E     Y
Sbjct: 57  RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATY 114

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
            +E+  AL + H   +I+RD+KPEN+         L      LK          ++D   
Sbjct: 115 ITELANALSYCHSKRVIHRDIKPENL---------LLGSAGELK----------IAD--- 152

Query: 254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV 313
                           FG S                                        
Sbjct: 153 ----------------FGWS----------------------------------VHAPSS 162

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R     GT +YL PE+I G  H   VD W+LG+  +E   G  PF+   ++ T   +   
Sbjct: 163 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 222

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC 428
              FP    V   A+DLI++LL  +P++R   +     +  H +    +     C
Sbjct: 223 EFTFP--DFVTEGARDLISRLLKHNPSQRPMLR----EVLEHPWITANSSKPSNC 271

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  210 bits (536), Expect = 5e-65
 Identities = 93/358 (25%), Positives = 133/358 (37%), Gaps = 88/358 (24%)

Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
             T+ D      LG G  G+VYL + K     N    A KV+ K +L     E + R E 
Sbjct: 10  KFTIDDFDIGRPLGKGKFGNVYLAREKQ----NKFIMALKVLFKSQLEKEGVEHQLRREI 65

Query: 138 EILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           EI   L HP +  +Y      +   L+ EF P G+L+   Q+    RF E     +  E+
Sbjct: 66  EIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEEL 123

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
             AL + H   +I+RD+KPEN+         L  +   LK          ++D       
Sbjct: 124 ADALHYCHERKVIHRDIKPENL---------LMGYKGELK----------IAD------- 157

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
                       FG              S   P  RR+                     +
Sbjct: 158 ------------FG-------------WSVHAPSLRRR---------------------T 171

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
             GT +YL PE+I G+ H   VD W  G+  +E   G  PF    H  T   +V   L+F
Sbjct: 172 MCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKF 231

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
           P  P +   +KDLI++LL   P +R    +    +  H +      A  R   PP   
Sbjct: 232 P--PFLSDGSKDLISKLLRYHPPQR----LPLKGVMEHPWVK----ANSRRVLPPVYQ 279

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  184 bits (470), Expect = 3e-55
 Identities = 73/355 (20%), Positives = 122/355 (34%), Gaps = 87/355 (24%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            SD   +  LG G  G V   +       +  ++A K +   E     K S    E  +L
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNAL----DSRYYAIKKIRHTE----EKLSTILSEVMLL 56

Query: 141 EMLDHPFLPTLYATLDCPRWS-------------CLLTEFCPGGDLHVLRQRQPDKRFHE 187
             L+H ++   YA     R                +  E+C  G L+ L   +       
Sbjct: 57  ASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQR 115

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
                   +++ AL ++H  GII+RDLKP N+ +    ++ + DF L+     S    +L
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKL 175

Query: 248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV 307
            S   P + D               S+                           GT    
Sbjct: 176 DSQNLPGSSD------------NLTSAI--------------------------GTA--- 194

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
                           Y+A E++ G GH    +D ++LGI  FE+ Y      G++    
Sbjct: 195 ---------------MYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP--FSTGMERVNI 237

Query: 367 LANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
           L  + + ++EFP +   +     K +I  L+  DP +R     GA  +    +  
Sbjct: 238 LKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKR----PGARTLLNSGWLP 288

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  182 bits (464), Expect = 7e-54
 Identities = 65/398 (16%), Positives = 124/398 (31%), Gaps = 123/398 (30%)

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV----- 125
           N         ++D R +  L  G    + L +       +  F+A K  +K  L      
Sbjct: 20  NKYVKEKDKYINDYRIIRTLNQGKFNKIILCE------KDNKFYALKKYEKSLLEKKRDF 73

Query: 126 ---------SRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--- 173
                     ++K    + E +I+  + + +  T    +       ++ E+     +   
Sbjct: 74  TKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKF 133

Query: 174 ---HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIML 229
                +  +          ++     V+ +  ++H    I +RD+KP N+L+        
Sbjct: 134 DEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILM-------- 185

Query: 230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH 289
            D +  +K          +SD                   FG              S   
Sbjct: 186 -DKNGRVK----------LSD-------------------FG-------------ESEYM 202

Query: 290 PKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIF 347
             ++ K                        GT+E++ PE  S E   +G  VD W+LGI 
Sbjct: 203 VDKKIK---------------------GSRGTYEFMPPEFFSNESSYNGAKVDIWSLGIC 241

Query: 348 IFELFYGTTPFKG-IDHELTLANVVARALEFPKE-----------------PSVPGPAKD 389
           ++ +FY   PF   I       N+  + +E+P +                   +     D
Sbjct: 242 LYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDID 301

Query: 390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR 427
            +   L K+P  R+ S+       +H++    N   LR
Sbjct: 302 FLKLFLRKNPAERITSE----DALKHEWLADTNIEDLR 335

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  180 bits (459), Expect = 6e-53
 Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 43  SAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQ 102
           +AA       + +        KE   +     + N   L     +  LG+G  G V LV+
Sbjct: 2   NAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVK 61

Query: 103 LKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC 162
            K     +G  +A K++DK+++V   +      E+ IL+ ++ PFL  L  +        
Sbjct: 62  HK----ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY 117

Query: 163 LLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV 221
           ++ E+  GG++   LR+     RF E   RFYA+++V+  E+LH + +IYRDLKPEN+L+
Sbjct: 118 MVMEYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLI 174

Query: 222 RSDGHIMLTDFDLSLKGDNSTST 244
              G+I +TDF  + +    T T
Sbjct: 175 DQQGYIQVTDFGFAKRVKGRTWT 197

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  150 bits (381), Expect = 9e-42
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R+ +  GT E LAPEII  +G+  AVDWW LG+ I+E+  G  PF           +V+ 
Sbjct: 194 RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSG 253

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAK 430
            + FP         KDL+  LL  D T+R G+ K G   IK H++F   +W  +  R  +
Sbjct: 254 KVRFP--SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVE 311

Query: 431 PPFIPR 436
            PFIP+
Sbjct: 312 APFIPK 317

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  174 bits (444), Expect = 5e-51
 Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
            +L D + +  LG+G  G V+L++ +     NG ++A KV+ K  +V   +      ER 
Sbjct: 3   YSLQDFQILRTLGTGSFGRVHLIRSRH----NGRYYAMKVLKKEIVVRLKQVEHTNDERL 58

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +L ++ HPF+  ++ T    +   ++ ++  GG+L  L ++   +RF     +FYA+EV 
Sbjct: 59  MLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVC 116

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           +ALE+LH   IIYRDLKPEN+L+  +GHI +TDF  +    + T T
Sbjct: 117 LALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT 162

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  151 bits (385), Expect = 2e-42
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 6/137 (4%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
            + +  GT +Y+APE++S + +  ++DWW+ GI I+E+  G TPF   +   T   ++  
Sbjct: 159 VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNA 218

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAK 430
            L FP  P      KDL+++L+ +D ++R+G+ + G   +K H +F  V W  L  R  +
Sbjct: 219 ELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIE 276

Query: 431 PPFIPRPVTCRDLTTTN 447
            P+ P P+      T+ 
Sbjct: 277 TPYEP-PIQQGQGDTSQ 292

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  173 bits (442), Expect = 1e-50
 Identities = 63/184 (34%), Positives = 90/184 (48%), Gaps = 11/184 (5%)

Query: 67  TSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS 126
           +SE + N     +       +  LG G  G V+ V+ K   +N G  FA KV+ K  +V 
Sbjct: 2   SSETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVR-KVTGANTGKIFAMKVLKKAMIVR 60

Query: 127 RNKE-SRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDK 183
             K+ +  + ER ILE + HPF+  L           L+ E+  GG+L   + R+     
Sbjct: 61  NAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREG---- 116

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDN 240
            F E    FY +E+ +AL  LH  GIIYRDLKPEN+++   GH+ LTDF L    +    
Sbjct: 117 IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT 176

Query: 241 STST 244
            T T
Sbjct: 177 VTHT 180

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  146 bits (372), Expect = 1e-40
 Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 5/128 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
              + +F GT EY+APEI+   GH  AVDWW+LG  ++++  G  PF G + + T+  ++
Sbjct: 175 GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKIL 234

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              L  P  P +   A+DL+ +LL ++   R+G+    A  ++ H FF  +NW  L  R 
Sbjct: 235 KCKLNLP--PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARK 292

Query: 429 AKPPFIPR 436
            +PPF P 
Sbjct: 293 VEPPFKPL 300

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  172 bits (439), Expect = 2e-50
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 11/187 (5%)

Query: 63  IKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR 122
           IKE     +    +     S    +  LG G  G V+LV+ K   S+    +A KV+ K 
Sbjct: 5   IKEIAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVK-KISGSDARQLYAMKVLKKA 63

Query: 123 ELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQ 180
            L  R++  R ++ER+IL  ++HPF+  L+          L+ +F  GGDL   + ++  
Sbjct: 64  TLKVRDRV-RTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV- 121

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LK 237
               F E  V+FY +E+ +AL+ LH +GIIYRDLKPEN+L+  +GHI LTDF LS   + 
Sbjct: 122 ---MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178

Query: 238 GDNSTST 244
            +    +
Sbjct: 179 HEKKAYS 185

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  148 bits (377), Expect = 2e-41
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           + ++ SF GT EY+APE+++  GH  + DWW+ G+ +FE+  GT PF+G D + T+  ++
Sbjct: 180 EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMIL 239

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              L  P    +   A+ L+  L  ++P  R+G+   G   IKRH FF+ ++W  L  R 
Sbjct: 240 KAKLGMP--QFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRRE 297

Query: 429 AKPPFIPR 436
             PPF P 
Sbjct: 298 IHPPFKPA 305

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  175 bits (446), Expect = 2e-49
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES 131
                 P+          LG G  G V+  Q+K      G  +A K ++K+ L  R    
Sbjct: 175 KWLEAQPMGEDWFLDFRVLGRGGFGEVFACQMK----ATGKLYACKKLNKKRLKKRKGYQ 230

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESA 189
            A +E++IL  +   F+ +L    +     CL+     GGD+  H+    + +  F E  
Sbjct: 231 GAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPR 290

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
             FY +++V  LE LH   IIYRDLKPENVL+  DG++ ++D  L+     G   T  
Sbjct: 291 AIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKG 348

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  142 bits (359), Expect = 3e-37
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA--- 368
             ++  + GT  ++APE++ GE +  +VD++ LG+ ++E+     PF+    ++      
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK 402

Query: 369 -NVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL 426
             V+ +A+ +P        +KD    LL KDP +R+G +      ++ H  F  ++W  L
Sbjct: 403 QRVLEQAVTYP--DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL 460

Query: 427 --RCAKPPFIPRP--VTCRD 442
                 PPF+P    V  ++
Sbjct: 461 EAGMLTPPFVPDSRTVYAKN 480

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  169 bits (431), Expect = 8e-49
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)

Query: 65  EATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL 124
              S+ +NN N + + L+D  F+  LG G  G V L + K         +A K++ K  +
Sbjct: 3   NTVSKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERK----GTDELYAVKILKKDVV 58

Query: 125 VSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQP 181
           +  +      +E+ +L +    PFL  L++          + E+  GGDL  H+ +    
Sbjct: 59  IQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG-- 116

Query: 182 DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKG 238
             RF E    FYA+E+ + L FL   GIIYRDLK +NV++ S+GHI + DF +    +  
Sbjct: 117 --RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD 174

Query: 239 DNSTST 244
             +T T
Sbjct: 175 GVTTKT 180

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  142 bits (361), Expect = 9e-39
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 6/135 (4%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
            V + +F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF+G D +    +++
Sbjct: 175 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 234

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              + +P   S+   A  +   L+ K P +R+G    G   IK H FF  ++W  L  + 
Sbjct: 235 EHNVAYP--KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKE 292

Query: 429 AKPPFIPRPVTCRDL 443
            +PP+ P+    R+ 
Sbjct: 293 IQPPYKPK-ACGRNA 306

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  169 bits (430), Expect = 2e-48
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 8/174 (4%)

Query: 73  NNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR 132
            + N  +       +  +G G  G V +VQ           +A K M+K++ V RN+   
Sbjct: 6   FDENEDVNFDHFEILRAIGKGSFGKVCIVQKND----TKKMYAMKYMNKQKCVERNEVRN 61

Query: 133 ARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
              E +I++ L+HPFL  L+ +        ++ +   GGDL    Q+     F E  V+ 
Sbjct: 62  VFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKL 119

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTST 244
           +  E+V+AL++L    II+RD+KP+N+L+   GH+ +TDF+++  L  +   +T
Sbjct: 120 FICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT 173

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  133 bits (338), Expect = 3e-35
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 312 DVRSMSFVGTHEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-- 366
           + +  +  GT  Y+APE+ S   G G+  AVDWW+LG+  +EL  G  P+       +  
Sbjct: 168 ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKE 227

Query: 367 -LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL 425
            +       + +P   +       L+ +LL  +P +R       + ++   + N +NW  
Sbjct: 228 IVHTFETTVVTYP--SAWSQEMVSLLKKLLEPNPDQRFS---QLSDVQNFPYMNDINWDA 282

Query: 426 L--RCAKPPFIP 435
           +  +   P FIP
Sbjct: 283 VFQKRLIPGFIP 294

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  167 bits (426), Expect = 2e-48
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K      G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREK----ATGRYYAMKILRKEVIIAKDEVAHTVTESR 57

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASE 196
           +L+   HPFL  L          C + E+  GG+L  H+ R+R     F E   RFY +E
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER----VFTEERARFYGAE 113

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
           +V ALE+LH   ++YRD+K EN+++  DGHI +TDF L    +    +  T
Sbjct: 114 IVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT 164

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  143 bits (362), Expect = 4e-39
 Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
                +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++
Sbjct: 159 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELIL 218

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              + FP   ++   AK L+A LL KDP +R+G     A  +  H+FF  +NW  +  + 
Sbjct: 219 MEEIRFP--RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276

Query: 429 AKPPFIPR 436
             PPF P+
Sbjct: 277 LLPPFKPQ 284

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  169 bits (430), Expect = 3e-48
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 14/187 (7%)

Query: 64  KEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
           KEA +   +   ++ L L D   +  +G G    V LV+LK         +A +V+ K  
Sbjct: 34  KEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLK----KTDRIYAMRVVKKEL 89

Query: 124 LVSRNKESRARIEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQ 180
           +         + E+ + E   +HPFL  L++          + E+  GGDL  H+ RQR 
Sbjct: 90  VNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQR- 148

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LK 237
              +  E   RFY++E+ +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +    L+
Sbjct: 149 ---KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205

Query: 238 GDNSTST 244
             ++TST
Sbjct: 206 PGDTTST 212

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  132 bits (334), Expect = 1e-34
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF---------KGID 362
              + +F GT  Y+APEI+ GE +G +VDWW LG+ +FE+  G +PF             
Sbjct: 207 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 266

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGATAIKRHQFFNG 420
            +     ++ + +  P   S+   A  ++   L KDP  R+G   + G   I+ H FF  
Sbjct: 267 EDYLFQVILEKQIRIP--RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 324

Query: 421 VNWALL--RCAKPPFIPR 436
           V+W ++  +   PPF P 
Sbjct: 325 VDWDMMEQKQVVPPFKPN 342

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  170 bits (432), Expect = 3e-48
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 65  EATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL 124
           E      +      L   D   +  +G G  G V +V+LK+        FA K+++K E+
Sbjct: 57  EWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKN----ADKVFAMKILNKWEM 112

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKR 184
           + R + +  R ER++L   D  ++ TL+          L+ ++  GGDL  L  +  + R
Sbjct: 113 LKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKF-EDR 171

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK----GDN 240
             E   RFY +E+V+A++ +H +  ++RD+KP+N+L+  +GHI L DF   LK    G  
Sbjct: 172 LPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV 231

Query: 241 STSTA 245
            +S A
Sbjct: 232 QSSVA 236

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  144 bits (364), Expect = 1e-38
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 10/133 (7%)

Query: 312 DVRSMSFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
            V+S   VGT +Y++PEI+         +G   DWW+LG+ ++E+ YG TPF       T
Sbjct: 230 TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET 289

Query: 367 LANVVARALEFP---KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
              ++     F    +   V   AKDLI +L+      R+G   G    K+H FF+G++W
Sbjct: 290 YGKIMNHKERFQFPTQVTDVSENAKDLIRRLI-CSREHRLGQN-GIEDFKKHPFFSGIDW 347

Query: 424 ALLRCAKPPFIPR 436
             +R  + P+IP 
Sbjct: 348 DNIRNCEAPYIPE 360

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  167 bits (425), Expect = 6e-48
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 64  KEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
                 G   N++N L + +  F+  LG G  G V L ++K      G  +A KV+ K  
Sbjct: 5   SSKEGNGIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVK----ETGDLYAVKVLKKDV 60

Query: 124 LVSRNKESRARIEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQ 180
           ++  +       E+ IL +  +HPFL  L+     P     + EF  GGDL  H+ + R 
Sbjct: 61  ILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSR- 119

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LK 237
              RF E+  RFYA+E++ AL FLH  GIIYRDLK +NVL+  +GH  L DF +    + 
Sbjct: 120 ---RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176

Query: 238 GDNSTST 244
              +T+T
Sbjct: 177 NGVTTAT 183

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  142 bits (360), Expect = 1e-38
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
            V + +F GT +Y+APEI+    +G AVDWW +G+ ++E+  G  PF+  + +     ++
Sbjct: 178 GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAIL 237

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM--GATAIKRHQFFNGVNWALL--R 427
              + +P    +   A  ++   + K+PT R+GS    G  AI RH FF  ++WA L  R
Sbjct: 238 NDEVVYP--TWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHR 295

Query: 428 CAKPPFIPR 436
             +PPF PR
Sbjct: 296 QIEPPFRPR 304

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  167 bits (424), Expect = 6e-48
 Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 14/176 (7%)

Query: 75  NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRAR 134
             +PL L D   +  +G G    V LV+LK         +A KV+ K  +         +
Sbjct: 2   AMDPLGLQDFDLLRVIGRGSYAKVLLVRLK----KTDRIYAMKVVKKELVNDDEDIDWVQ 57

Query: 135 IEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVR 191
            E+ + E   +HPFL  L++          + E+  GGDL  H+ RQR    +  E   R
Sbjct: 58  TEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQR----KLPEEHAR 113

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
           FY++E+ +AL +LH  GIIYRDLK +NVL+ S+GHI LTD+ +    L+  ++TST
Sbjct: 114 FYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST 169

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  134 bits (339), Expect = 9e-36
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF---------KGID 362
              + +F GT  Y+APEI+ GE +G +VDWW LG+ +FE+  G +PF             
Sbjct: 164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNT 223

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS--KMGATAIKRHQFFNG 420
            +     ++ + +  P   S+   A  ++   L KDP  R+G   + G   I+ H FF  
Sbjct: 224 EDYLFQVILEKQIRIP--RSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN 281

Query: 421 VNWALL--RCAKPPFIPR 436
           V+W ++  +   PPF P 
Sbjct: 282 VDWDMMEQKQVVPPFKPN 299

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  165 bits (420), Expect = 2e-47
 Identities = 78/387 (20%), Positives = 134/387 (34%), Gaps = 92/387 (23%)

Query: 34  GSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSG 93
           G  P+    +      AP      P  K I E   +        P +         LG G
Sbjct: 1   GPAPADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVD--------PRSRRRYVRGRFLGKG 52

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA 153
                + +      ++    FA K++ K  L+  ++  +  +E  I   L H  +   + 
Sbjct: 53  GFAKCFEI----SDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108

Query: 154 TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYR 212
             +   +  ++ E C    L  + ++R   K   E   R+Y  ++V+  ++LH   +I+R
Sbjct: 109 FFEDNDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRNRVIHR 165

Query: 213 DLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGN 272
           DLK  N+ +         + DL +K          + D                   FG 
Sbjct: 166 DLKLGNLFL---------NEDLEVK----------IGD-------------------FGL 187

Query: 273 SSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG 332
           ++ +                 RKK L   GTP                   Y+APE++S 
Sbjct: 188 ATKV------------EYDGERKKVLC--GTPN------------------YIAPEVLSK 215

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA 392
           +GH   VD W++G  ++ L  G  PF+    + T   +       P    +   A  LI 
Sbjct: 216 KGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIP--KHINPVAASLIQ 273

Query: 393 QLLVKDPTRRMGSKMGATAIKRHQFFN 419
           ++L  DPT R         +   +FF 
Sbjct: 274 KMLQTDPTAR----PTINELLNDEFFT 296

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  165 bits (420), Expect = 3e-47
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 10/181 (5%)

Query: 68  SEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR 127
                 +    L + D      LG G  G V+L + K        FFA K + K  ++  
Sbjct: 3   LNKERPSLQIKLKIEDFILHKMLGKGSFGKVFLAEFK----KTNQFFAIKALKKDVVLMD 58

Query: 128 NKESRARIEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH 186
           +      +E+ +L +  +HPFL  ++ T         + E+  GGDL    Q     +F 
Sbjct: 59  DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFD 116

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTS 243
            S   FYA+E+++ L+FLH  GI+YRDLK +N+L+  DGHI + DF +    + GD  T+
Sbjct: 117 LSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN 176

Query: 244 T 244
           T
Sbjct: 177 T 177

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  138 bits (349), Expect = 4e-37
 Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++ +F GT +Y+APEI+ G+ + ++VDWW+ G+ ++E+  G +PF G D E    ++ 
Sbjct: 172 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 231

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P    +   AKDL+ +L V++P +R+G       I++H  F  +NW  L  +  
Sbjct: 232 MDNPFYP--RWLEKEAKDLLVKLFVREPEKRLGV---RGDIRQHPLFREINWEELERKEI 286

Query: 430 KPPFIPR 436
            PPF P+
Sbjct: 287 DPPFRPK 293

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  169 bits (431), Expect = 5e-47
 Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES 131
                 P+T +  R    LG G  G V   Q++      G  +A K ++K+ +  R  E+
Sbjct: 174 KWLERQPVTKNTFRQYRVLGKGGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEA 229

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVR 191
            A  E++ILE ++  F+ +L    +     CL+     GGDL           F E+   
Sbjct: 230 MALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAV 289

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTST 244
           FYA+E+   LE LH   I+YRDLKPEN+L+   GHI ++D  L+  +    +   
Sbjct: 290 FYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG 344

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  147 bits (372), Expect = 6e-39
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
                  VGT  Y+APE++  E +  + DWW LG  ++E+  G +PF+    ++    V 
Sbjct: 339 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVE 398

Query: 372 ARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL-- 426
               E P+E        A+ L +QLL KDP  R+G +   A  +K H  F  +N+  L  
Sbjct: 399 RLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGA 458

Query: 427 RCAKPPFIPRP--VTCRD 442
              +PPF P P  + C+D
Sbjct: 459 GMLEPPFKPDPQAIYCKD 476

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  164 bits (418), Expect = 1e-46
 Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 14/177 (7%)

Query: 74  NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA 133
           ++N     SD  F+  +G G  G V L + K        F+A KV+ K+ ++ + +E   
Sbjct: 30  SSNPHAKPSDFHFLKVIGKGSFGKVLLARHK----AEEVFYAVKVLQKKAILKKKEEKHI 85

Query: 134 RIEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAV 190
             ER +L   + HPFL  L+ +         + ++  GG+L  H+ R+R     F E   
Sbjct: 86  MSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRER----CFLEPRA 141

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
           RFYA+E+  AL +LH + I+YRDLKPEN+L+ S GHI+LTDF L    ++ +++TST
Sbjct: 142 RFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTST 198

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  150 bits (380), Expect = 2e-41
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 4/127 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           +  + +F GT EYLAPE++  + +   VDWW LG  ++E+ YG  PF   +      N++
Sbjct: 193 NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNIL 252

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
            + L+    P++   A+ L+  LL KD T+R+G+K     IK H FF+ +NW  L  +  
Sbjct: 253 NKPLQLK--PNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKI 310

Query: 430 KPPFIPR 436
            PPF P 
Sbjct: 311 TPPFNPN 317

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  161 bits (409), Expect = 3e-46
 Identities = 70/344 (20%), Positives = 124/344 (36%), Gaps = 84/344 (24%)

Query: 77  NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE 136
           +P +         LG G     + +      ++    FA K++ K  L+  ++  +  +E
Sbjct: 10  DPRSRRRYVRGRFLGKGGFAKCFEI----SDADTKEVFAGKIVPKSLLLKPHQREKMSME 65

Query: 137 REILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
             I   L H  +   +   +   +  ++ E C    L  + ++R   K   E   R+Y  
Sbjct: 66  ISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRR---KALTEPEARYYLR 122

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
           ++V+  ++LH   +I+RDLK  N+ +         + DL +K          + D     
Sbjct: 123 QIVLGCQYLHRNRVIHRDLKLGNLFL---------NEDLEVK----------IGD----- 158

Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS 315
                         FG ++ +                 RKK L   GTP           
Sbjct: 159 --------------FGLATKV------------EYDGERKKVLC--GTPN---------- 180

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
                   Y+APE++S +GH   VD W++G  ++ L  G  PF+    + T   +     
Sbjct: 181 --------YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 232

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             P    +   A  LI ++L  DPT R         +   +FF 
Sbjct: 233 SIP--KHINPVAASLIQKMLQTDPTAR----PTINELLNDEFFT 270

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  163 bits (414), Expect = 1e-45
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 19/234 (8%)

Query: 17  FTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNN 76
           F   T     E T             +AA+        +D+           E +     
Sbjct: 88  FHVETPEEREEWTTAIQTVADGLKKQAAAEMDFRSGSPSDNS-----GAEEMEVSLAKPK 142

Query: 77  NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE 136
           + +T+++  ++  LG G  G V LV+ K      G ++A K++ K  +V++++ +    E
Sbjct: 143 HRVTMNEFEYLKLLGKGTFGKVILVKEK----ATGRYYAMKILKKEVIVAKDEVAHTLTE 198

Query: 137 REILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYA 194
             +L+   HPFL  L  +       C + E+  GG+L  H+ R+R     F E   RFY 
Sbjct: 199 NRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRER----VFSEDRARFYG 254

Query: 195 SEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLS---LKGDNSTST 244
           +E+V AL++LH    ++YRDLK EN+++  DGHI +TDF L    +K   +  T
Sbjct: 255 AEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKT 308

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  143 bits (362), Expect = 3e-38
 Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
                +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  PF   DHE     ++
Sbjct: 303 GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL 362

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              + FP   ++   AK L++ LL KDP +R+G     A  I +H+FF G+ W  +  + 
Sbjct: 363 MEEIRFP--RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 420

Query: 429 AKPPFIPR 436
             PPF P+
Sbjct: 421 LSPPFKPQ 428

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  160 bits (406), Expect = 4e-45
 Identities = 81/324 (25%), Positives = 124/324 (38%), Gaps = 88/324 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIERE--ILEMLDHP 146
           LGSG    V   + KS     G  +AAK + KR+  + R    R  IERE  IL  + HP
Sbjct: 20  LGSGQFAIVKKCREKS----TGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHP 75

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLH 205
            + TL+   +      L+ E   GG+L          +   E     +  +++  + +LH
Sbjct: 76  NIITLHDVYENRTDVVLILELVSGGELF---DFLAQKESLSEEEATSFIKQILDGVNYLH 132

Query: 206 MMGIIYRDLKPENVLVRS----DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
              I + DLKPEN+++        HI L DF L+ + ++      +              
Sbjct: 133 TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIF------------- 179

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                                                   GTPE VA             
Sbjct: 180 ----------------------------------------GTPEFVA------------- 186

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
                PEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ A + +F +E 
Sbjct: 187 -----PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEF 241

Query: 382 --SVPGPAKDLIAQLLVKDPTRRM 403
                  AKD I +LLVK+  +R+
Sbjct: 242 FSQTSELAKDFIRKLLVKETRKRL 265

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  159 bits (405), Expect = 4e-45
 Identities = 71/320 (22%), Positives = 116/320 (36%), Gaps = 78/320 (24%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           +G G    V     +      G  FA K++D  +  S    S   ++RE  I  ML HP 
Sbjct: 32  IGKGPFSVVRRCINRE----TGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPH 87

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  L  T        ++ EF  G DL   ++++      + E+    Y  +++ AL + H
Sbjct: 88  IVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH 147

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAV 265
              II+RD+KP  VL+ S       +    +K          +                 
Sbjct: 148 DNNIIHRDVKPHCVLLASK------ENSAPVK----------LGG--------------- 176

Query: 266 DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL 325
               FG +                       +LG  G            +   VGT  ++
Sbjct: 177 ----FGVA----------------------IQLGESGL----------VAGGRVGTPHFM 200

Query: 326 APEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP--SV 383
           APE++  E +G  VD W  G+ +F L  G  PF G    L    ++    +        +
Sbjct: 201 APEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERL-FEGIIKGKYKMNPRQWSHI 259

Query: 384 PGPAKDLIAQLLVKDPTRRM 403
              AKDL+ ++L+ DP  R+
Sbjct: 260 SESAKDLVRRMLMLDPAERI 279

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  160 bits (407), Expect = 4e-45
 Identities = 77/378 (20%), Positives = 123/378 (32%), Gaps = 92/378 (24%)

Query: 34  GSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSG 93
             +           +  P   + D  ++ I +             +       +  LGSG
Sbjct: 4   SHHHHHHGSKVRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVY-DYYDILEELGSG 62

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTL 151
             G V+    K+     G  F AK ++           +  ++ E  I+  L HP L  L
Sbjct: 63  AFGVVHRCVEKA----TGRVFVAKFINTPYP-----LDKYTVKNEISIMNQLHHPKLINL 113

Query: 152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYASEVVVALEFLHMMGI 209
           +   +      L+ EF  GG+L     R   + +   E+ V  Y  +    L+ +H   I
Sbjct: 114 HDAFEDKYEMVLILEFLSGGELF---DRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSI 170

Query: 210 IYRDLKPENVLVRS--DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQ 267
           ++ D+KPEN++  +     + + DF L+ K +                            
Sbjct: 171 VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT------------------- 211

Query: 268 PPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAP 327
                                              T E  A                  P
Sbjct: 212 ----------------------------------ATAEFAA------------------P 219

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPG 385
           EI+  E  G   D W +G+  + L  G +PF G D   TL NV     EF ++   SV  
Sbjct: 220 EIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSP 279

Query: 386 PAKDLIAQLLVKDPTRRM 403
            AKD I  LL K+P +R+
Sbjct: 280 EAKDFIKNLLQKEPRKRL 297

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  163 bits (413), Expect = 3e-44
 Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 14/250 (5%)

Query: 1   MQPSAEDTAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCW 60
           +     +  +   +  F   +   G              +     K   A          
Sbjct: 260 LSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPE 319

Query: 61  KAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD 120
           +      S+ +NN N + + L+D  F+  LG G  G V L + K         +A K++ 
Sbjct: 320 EKTANTISKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSERK----GTDELYAVKILK 375

Query: 121 KRELVSRNKESRARIEREILEM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLR 177
           K  ++  +      +E+ +L +    PFL  L++          + E+  GGDL  H+ +
Sbjct: 376 KDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ 435

Query: 178 QRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-- 235
                 RF E    FYA+E+ + L FL   GIIYRDLK +NV++ S+GHI + DF +   
Sbjct: 436 VG----RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKE 491

Query: 236 -LKGDNSTST 244
            +    +T T
Sbjct: 492 NIWDGVTTKT 501

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  139 bits (352), Expect = 7e-36
 Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 6/135 (4%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
            V + +F GT +Y+APEII+ + +G +VDWW  G+ ++E+  G  PF+G D +    +++
Sbjct: 496 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM 555

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
              + +P   S+   A  +   L+ K P +R+G    G   IK H FF  ++W  L  + 
Sbjct: 556 EHNVAYP--KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKE 613

Query: 429 AKPPFIPRPVTCRDL 443
            +PP+ P+  + R+ 
Sbjct: 614 IQPPYKPK-ASGRNA 627

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  155 bits (394), Expect = 8e-44
 Identities = 76/322 (23%), Positives = 124/322 (38%), Gaps = 86/322 (26%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDH-P 146
           LG G    V     KS     G  +AAK + KR      ++ RA I  E  +LE+    P
Sbjct: 37  LGRGKFAVVRQCISKS----TGQEYAAKFLKKRRR---GQDCRAEILHEIAVLELAKSCP 89

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            +  L+   +      L+ E+  GG++  L   +  +   E+ V     +++  + +LH 
Sbjct: 90  RVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQ 149

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
             I++ DLKP+N+L+ S    G I + DF +S K                          
Sbjct: 150 NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRK-------------------------- 183

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
                                   +      ++ +G   TPE +A               
Sbjct: 184 ------------------------IGHACELREIMG---TPEYLA--------------- 201

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP-- 381
              PEI++ +    A D W +GI  + L   T+PF G D++ T  N+    +++ +E   
Sbjct: 202 ---PEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFS 258

Query: 382 SVPGPAKDLIAQLLVKDPTRRM 403
           SV   A D I  LLVK+P +R 
Sbjct: 259 SVSQLATDFIQSLLVKNPEKRP 280

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  156 bits (395), Expect = 2e-43
 Identities = 78/410 (19%), Positives = 141/410 (34%), Gaps = 108/410 (26%)

Query: 19  STTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDP-CWKAIKEATSEGNNNNNNN 77
           S+  + G+E  +  S  N       +          N D      +K   +     +   
Sbjct: 9   SSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPA 68

Query: 78  PLTLSDLRFVHR----------------LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK 121
           P    D R V                  LG G  G V+  +  +     G   AAK++  
Sbjct: 69  PPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETA----TGLKLAAKIIKT 124

Query: 122 RELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLR 177
           R +     + +  ++ E  ++  LDH  L  LY   +      L+ E+  GG+L   ++ 
Sbjct: 125 RGM-----KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIID 179

Query: 178 QRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DGHIMLTDFDLS 235
           +        E     +  ++   +  +H M I++ DLKPEN+L  +     I + DF L+
Sbjct: 180 E---SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLA 236

Query: 236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRK 295
            +                                                    P+ + K
Sbjct: 237 RR--------------------------------------------------YKPREKLK 246

Query: 296 KKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT 355
              G   TPE +A                  PE+++ +      D W++G+  + L  G 
Sbjct: 247 VNFG---TPEFLA------------------PEVVNYDFVSFPTDMWSVGVIAYMLLSGL 285

Query: 356 TPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
           +PF G +   TL N++A   +   E    +   AK+ I++LL+K+ + R+
Sbjct: 286 SPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRI 335

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  152 bits (385), Expect = 8e-43
 Identities = 69/354 (19%), Positives = 119/354 (33%), Gaps = 90/354 (25%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
           L+D   +  LG G  G V+  + K     + C +A K +         + +R ++ RE  
Sbjct: 4   LTDFEPIQCLGRGGFGVVFEAKNKV----DDCNYAIKRIRL----PNRELAREKVMREVK 55

Query: 139 ILEMLDHPFLPTLY---ATLDCPRWS---------CLLTEFCPGGDL-HVLRQRQPDKRF 185
            L  L+HP +   +      +               +  + C   +L   +  R   +  
Sbjct: 56  ALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEER 115

Query: 186 HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
             S       ++  A+EFLH  G+++RDLKP N+    D  + + DF L    D      
Sbjct: 116 ERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQ 175

Query: 246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE 305
            +++                                        P     +  G  GT  
Sbjct: 176 TVLT----------------------------------------PMPAYARHTGQVGTK- 194

Query: 306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL 365
                             Y++PE I G  + + VD ++LG+ +FEL Y       ++   
Sbjct: 195 -----------------LYMSPEQIHGNSYSHKVDIFSLGLILFELLY--PFSTQMERVR 235

Query: 366 TLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           TL +V  R L+FP   +        ++  +L   P  R      A  I  +  F
Sbjct: 236 TLTDV--RNLKFPPLFTQKYPCEYVMVQDMLSPSPMER----PEAINIIENAVF 283

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  152 bits (386), Expect = 1e-42
 Identities = 71/375 (18%), Positives = 123/375 (32%), Gaps = 118/375 (31%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           +G G  G V +              A K+M+K ++   N +   RI+ E  +++ L HP 
Sbjct: 34  IGQGSYGVVRVAIENQ----TRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPN 89

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL---------------------------------- 173
           +  LY   +  ++ CL+ E C GG L                                  
Sbjct: 90  IARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEA 149

Query: 174 ----HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
                   +   D    E  +     ++  AL +LH  GI +RD+KPEN L  ++     
Sbjct: 150 INGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNK---- 205

Query: 230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLH 289
                 +K          + D                   FG S                
Sbjct: 206 ---SFEIK----------LVD-------------------FGLSKEFYKL---------- 223

Query: 290 PKRRRKKKLGNPGTPEIVAEPLDVRSMS-FVGTHEYLAPEIISGEGH--GNAVDWWTLGI 346
                                 +   M+   GT  ++APE+++      G   D W+ G+
Sbjct: 224 -------------------NNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV 264

Query: 347 FIFELFYGTTPFKGIDHELTLANVVARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRMG 404
            +  L  G  PF G++   T++ V+ + L F       +   A+DL++ LL ++   R  
Sbjct: 265 LLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDER-- 322

Query: 405 SKMGATAIKRHQFFN 419
               A    +H + +
Sbjct: 323 --FDAMRALQHPWIS 335

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  156 bits (395), Expect = 4e-42
 Identities = 76/393 (19%), Positives = 127/393 (32%), Gaps = 107/393 (27%)

Query: 35  SNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLR--------- 85
             P++               + D   K ++   +  +N +N                   
Sbjct: 94  CEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHD 153

Query: 86  -------FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
                      LG+G  G V+ V  ++     G  FAAK +        ++  +  + +E
Sbjct: 154 HVLDHYDIHEELGTGAFGVVHRVTERA----TGNNFAAKFVMTP-----HESDKETVRKE 204

Query: 139 --ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYA 194
              + +L HP L  L+   +      ++ EF  GG+L    ++  D+     E     Y 
Sbjct: 205 IQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELF---EKVADEHNKMSEDEAVEYM 261

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLV--RSDGHIMLTDFDLSLKGDNSTSTAQLVSDQS 252
            +V   L  +H    ++ DLKPEN++   +    + L DF L+                 
Sbjct: 262 RQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH--------------- 306

Query: 253 PPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD 312
                                              L PK+  K   G   T E  A    
Sbjct: 307 -----------------------------------LDPKQSVKVTTG---TAEFAA---- 324

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
                         PE+  G+  G   D W++G+  + L  G +PF G + + TL NV +
Sbjct: 325 --------------PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKS 370

Query: 373 RALEFPKE--PSVPGPAKDLIAQLLVKDPTRRM 403
                       +    KD I +LL+ DP  RM
Sbjct: 371 CDWNMDDSAFSGISEDGKDFIRKLLLADPNTRM 403

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  154 bits (390), Expect = 7e-42
 Identities = 75/322 (23%), Positives = 122/322 (37%), Gaps = 79/322 (24%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           +    LG G  G V L + K      G   A KV+ KR++  +  +     E ++L+ LD
Sbjct: 29  KGQRVLGKGSFGEVILCKDKI----TGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEF 203
           HP +  LY   +   +  L+ E   GG+L   +  R   KRF E        +V+  + +
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITY 141

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
           +H   I++RDLKPEN+L+ S         D +++                          
Sbjct: 142 MHKNKIVHRDLKPENLLLESK------SKDANIR-------------------------- 169

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
            +D   FG S+    +                             + +       +GT  
Sbjct: 170 IID---FGLSTHFEAS-----------------------------KKMK----DKIGTAY 193

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP-- 381
           Y+APE++ G  +    D W+ G+ ++ L  G  PF G +    L  V      F      
Sbjct: 194 YIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWK 252

Query: 382 SVPGPAKDLIAQLLVKDPTRRM 403
            V   AKDLI ++L   P+ R+
Sbjct: 253 KVSESAKDLIRKMLTYVPSMRI 274

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  149 bits (378), Expect = 1e-41
 Identities = 63/367 (17%), Positives = 120/367 (32%), Gaps = 92/367 (25%)

Query: 66  ATSEGNNNNNNNPLTLSDLRFV--HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
               G  N     +++    +    ++GSG    V+ V      +     +A K ++  E
Sbjct: 10  GVDLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVL-----NEKKQIYAIKYVNLEE 64

Query: 124 LVSRNKESRARIEREI--LEMLDHPFLP--TLYATLDCPRWSCLLTEFCPGGDLH-VLRQ 178
               + ++      EI  L  L         LY      ++  ++ E C   DL+  L++
Sbjct: 65  A---DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKK 120

Query: 179 RQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
           +   K       + Y   ++ A+  +H  GI++ DLKP N L+  DG + L DF ++ + 
Sbjct: 121 K---KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIANQM 176

Query: 239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL 298
              T++                           +S                         
Sbjct: 177 QPDTTSVVK------------------------DSQV----------------------- 189

Query: 299 GNPGT-----PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY 353
              GT     PE + +                     S        D W+LG  ++ + Y
Sbjct: 190 ---GTVNYMPPEAIKD------------MSSSRENGKSKSKISPKSDVWSLGCILYYMTY 234

Query: 354 GTTPFKGIDHEL-TLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI 412
           G TPF+ I +++  L  ++    E           +D++   L +DP +R    +    +
Sbjct: 235 GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQR----ISIPEL 290

Query: 413 KRHQFFN 419
             H +  
Sbjct: 291 LAHPYVQ 297

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  153 bits (388), Expect = 2e-41
 Identities = 81/361 (22%), Positives = 132/361 (36%), Gaps = 84/361 (23%)

Query: 48  HHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS 107
           HH       +  +       + G    +         + V +LGSG  G V L + K   
Sbjct: 3   HHHHHSSGRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKV-- 60

Query: 108 SNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLT 165
                  A K++ K  + + +     ++  E  +L++LDHP +  LY   +  R   L+ 
Sbjct: 61  --THVERAIKIIRKTSVSTSSNS---KLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115

Query: 166 EFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
           E   GG+L   +  R    +F+E        +V+  + +LH   I++RDLKPEN+L+ S 
Sbjct: 116 ECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESK 172

Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
                 + D  +K                           VD   FG S+          
Sbjct: 173 ------EKDALIK--------------------------IVD---FGLSAVFENQ----- 192

Query: 285 VSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTL 344
                                   + +       +GT  Y+APE++  + +    D W++
Sbjct: 193 ------------------------KKMK----ERLGTAYYIAPEVLRKK-YDEKCDVWSI 223

Query: 345 GIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP--SVPGPAKDLIAQLLVKDPTRR 402
           G+ +F L  G  PF G   +  L  V      F      +V   AKDLI Q+L  D  RR
Sbjct: 224 GVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRR 283

Query: 403 M 403
           +
Sbjct: 284 I 284

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  149 bits (379), Expect = 5e-41
 Identities = 67/402 (16%), Positives = 132/402 (32%), Gaps = 95/402 (23%)

Query: 31  TTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRF--VH 88
            +SG  P  S            +  D P    +     +  +++ N  +++    +  + 
Sbjct: 6   HSSGLVPRGSGMKETAAAKFERQHMDSP---DLGTDDDDKASSSANECISVKGRIYSILK 62

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
           ++GSG    V+ V      +     +A K ++  E    + ++      EI  L  L   
Sbjct: 63  QIGSGGSSKVFQVL-----NEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQH 114

Query: 147 FLP--TLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEF 203
                 LY      ++  ++ E C   DL+  L+++   K       + Y   ++ A+  
Sbjct: 115 SDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHT 170

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
           +H  GI++ DLKP N L+  DG + L DF ++ +    T++                   
Sbjct: 171 IHQHGIVHSDLKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVK---------------- 213

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT-----PEIVAEPLDVRSMSF 318
                   +S                            G      PE + +         
Sbjct: 214 --------DSQV--------------------------GAVNYMPPEAIKD--------- 230

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEF 377
                       S        D W+LG  ++ + YG TPF+ I +++  L  ++    E 
Sbjct: 231 ---MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI 287

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
                     +D++   L +DP +R    +    +  H +  
Sbjct: 288 EFPDIPEKDLQDVLKCCLKRDPKQR----ISIPELLAHPYVQ 325

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  150 bits (380), Expect = 2e-40
 Identities = 75/319 (23%), Positives = 122/319 (38%), Gaps = 84/319 (26%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G  G V   + +         +A KV++K    +++      I RE  +L+ LDHP 
Sbjct: 30  LGKGSFGEVLKCKDRI----TQQEYAVKVINKASAKNKDTS---TILREVELLKKLDHPN 82

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  L+  L+      ++ E   GG+L   + +R   KRF E        +V   + ++H 
Sbjct: 83  IMKLFEILEDSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHK 139

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
             I++RDLKPEN+L+ S       + D  +K                           +D
Sbjct: 140 HNIVHRDLKPENILLESK------EKDCDIK--------------------------IID 167

Query: 267 QPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA 326
              FG S+C   N                               +       +GT  Y+A
Sbjct: 168 ---FGLSTCFQQN-----------------------------TKMK----DRIGTAYYIA 191

Query: 327 PEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP--SVP 384
           PE++ G  +    D W+ G+ ++ L  GT PF G +    L  V      F      ++ 
Sbjct: 192 PEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTIS 250

Query: 385 GPAKDLIAQLLVKDPTRRM 403
             AKDLI ++L   P+ R+
Sbjct: 251 DDAKDLIRKMLTFHPSLRI 269

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  147 bits (372), Expect = 2e-40
 Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 90/341 (26%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +GSG    V+ V      +     +A K ++  E    + ++      EI  L  L    
Sbjct: 17  IGSGGSSKVFQVL-----NEKKQIYAIKYVNLEEA---DNQTLDSYRNEIAYLNKLQQHS 68

Query: 148 LP--TLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFL 204
                LY      ++  ++ E C   DL+  L+++   K       + Y   ++ A+  +
Sbjct: 69  DKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTI 124

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H  GI++ DLKP N L+  DG + L DF ++ +    T++                    
Sbjct: 125 HQHGIVHSDLKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVK----------------- 166

Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT-----PEIVAEPLDVRSMSFV 319
                  +S                            GT     PE + +          
Sbjct: 167 -------DSQV--------------------------GTVNYMPPEAIKDMS-------- 185

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFP 378
                      S        D W+LG  ++ + YG TPF+ I +++  L  ++    E  
Sbjct: 186 ----SSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIE 241

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
                    +D++   L +DP +R    +    +  H +  
Sbjct: 242 FPDIPEKDLQDVLKCCLKRDPKQR----ISIPELLAHPYVQ 278

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  145 bits (368), Expect = 4e-40
 Identities = 69/354 (19%), Positives = 116/354 (32%), Gaps = 84/354 (23%)

Query: 64  KEATSEGNNNNNNNPLTLS----DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM 119
               S G  N       +        F+ +LG G    V LV+       +G F+A K +
Sbjct: 7   HHHHSSGRENLYFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLH----DGHFYALKRI 62

Query: 120 DKRELVSRNKESRARIEREILEMLDHPFLPTLY-ATLDCPRWS---CLLTEFCPGGDL-- 173
              E   R +   A+ E ++  + +HP +  L    L          LL  F   G L  
Sbjct: 63  LCHEQQDREE---AQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWN 119

Query: 174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD 233
            + R +       E  + +    +   LE +H  G  +RDLKP N        I+L D +
Sbjct: 120 EIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTN--------ILLGD-E 170

Query: 234 LSLK-GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR 292
                 D                               G+ +           +C+H + 
Sbjct: 171 GQPVLMD------------------------------LGSMN----------QACIHVEG 190

Query: 293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGH---GNAVDWWTLGIFIF 349
            R          + +         +   T  Y APE+ S + H       D W+LG  ++
Sbjct: 191 SR----------QALTLQDWA---AQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLY 237

Query: 350 ELFYGTTPFKGID-HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            + +G  P+  +     ++A  V   L  P+ P        L+  ++  DP +R
Sbjct: 238 AMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQR 291

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  147 bits (374), Expect = 2e-39
 Identities = 77/369 (20%), Positives = 130/369 (35%), Gaps = 89/369 (24%)

Query: 48  HHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS 107
           HH     +          A + G                V +LGSG  G V L + K+  
Sbjct: 2   HHHHHHSSGRENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKN-- 59

Query: 108 SNNGCFFAAKVMDKRELVSR--------NKESRARIERE--ILEMLDHPFLPTLYATLDC 157
                  A KV+ K +             ++    I  E  +L+ LDHP +  L+   + 
Sbjct: 60  --GHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFED 117

Query: 158 PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP 216
            ++  L+TEF  GG+L   +  R    +F E        +++  + +LH   I++RD+KP
Sbjct: 118 KKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHKHNIVHRDIKP 174

Query: 217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCI 276
           EN+L+ +       +  L++K                           VD   FG SS  
Sbjct: 175 ENILLENK------NSLLNIK--------------------------IVD---FGLSSFF 199

Query: 277 IPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHG 336
                                              D +    +GT  Y+APE++  + + 
Sbjct: 200 SK---------------------------------DYKLRDRLGTAYYIAPEVLKKK-YN 225

Query: 337 NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP--SVPGPAKDLIAQL 394
              D W+ G+ ++ L  G  PF G + +  +  V      F      ++   AK+LI  +
Sbjct: 226 EKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLM 285

Query: 395 LVKDPTRRM 403
           L  D  +R 
Sbjct: 286 LTYDYNKRC 294

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  142 bits (360), Expect = 1e-38
 Identities = 53/346 (15%), Positives = 97/346 (28%), Gaps = 76/346 (21%)

Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLK-SKSSNNGCFFAAKVMDKRELVSRNKESRARIE 136
            L    +   H LG G    VY         + N   F  KV       +  +       
Sbjct: 61  QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQL 117

Query: 137 REILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH---VLRQRQPDKRFHESAVRFY 193
            E L+          Y+       S L+ E    G L     L +  P+K   +  V  +
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISF 177

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
           A  ++  +E +H   II+ D+KP+N ++ +                           +  
Sbjct: 178 AMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFL------------------------EQD 213

Query: 254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV 313
              D       +D    G S                               ++   P   
Sbjct: 214 DEDDLSAGLALID---LGQSI------------------------------DMKLFPKGT 240

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF-KGIDHELTLANVVA 372
              +   T  +   E++S +     +D++ +   ++ + +GT    K    E     +  
Sbjct: 241 IFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFR 300

Query: 373 RALEFP-----------KEPSVPGPAKDLIAQLLVKDPTRRMGSKM 407
           R                       P+ DL+ Q L K   +   +K+
Sbjct: 301 RLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHYTNKI 346

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  144 bits (363), Expect = 1e-38
 Identities = 53/392 (13%), Positives = 92/392 (23%), Gaps = 119/392 (30%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL--- 140
           L     LG  D  +             G  F   V    E    N   + + E   L   
Sbjct: 80  LVRGTVLGQEDPYAYLEA----TDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLL 135

Query: 141 -------------------EMLDHPFLPTLYATLDCPRWSCLLTEF----CPGGDLHVL- 176
                              +++  P    +       R   +L+ F        +L    
Sbjct: 136 RGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFG 195

Query: 177 ----RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
                     K     A      +V+  L  LH  G+++  L+P ++++   G + LT F
Sbjct: 196 EVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGF 255

Query: 233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR 292
           +  ++   S  +         P G             F                      
Sbjct: 256 EHLVRDGASAVS---------PIG-----------RGFA--------------------- 274

Query: 293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGN-----AVDWWTLGIF 347
                      PE  A                    ++    H       A D WTLG+ 
Sbjct: 275 ----------PPETTA------------------ERMLPFGQHHPTLMTFAFDTWTLGLA 306

Query: 348 IFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM 407
           I+ ++    P            +      F    ++P P + L+   L      R    +
Sbjct: 307 IYWIWCADLPNTDDAALGGSEWI------FRSCKNIPQPVRALLEGFLRYPKEDR----L 356

Query: 408 GATAIKRHQFFNGVNWALLRCAKPPFIPRPVT 439
                     +  +   L             T
Sbjct: 357 LPLQAMETPEYEQLRTELSAALPLYQTDGEPT 388

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  134 bits (339), Expect = 3e-36
 Identities = 84/378 (22%), Positives = 145/378 (38%), Gaps = 109/378 (28%)

Query: 70  GNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK 129
           G++ ++ + + L+       +G G  G V L      + N+  ++A KV+ K++L+ +  
Sbjct: 1   GSSGSSGDCVQLNQYTLKDEIGKGSYGVVKLA----YNENDNTYYAMKVLSKKKLIRQAG 56

Query: 130 ESR---------------------ARIEREI--LEMLDHPFLPTLYATLDCPRWS--CLL 164
             R                      ++ +EI  L+ LDHP +  L   LD P      ++
Sbjct: 57  FPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMV 116

Query: 165 TEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD 224
            E    G +  +      K   E   RFY  +++  +E+LH   II+RD+KP N+LV   
Sbjct: 117 FELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV--- 170

Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
                   D  +K          ++D                   FG S     N    +
Sbjct: 171 ------GEDGHIK----------IAD-------------------FGVS-----NEFKGS 190

Query: 285 VSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG---HGNAVDW 341
            + L                            + VGT  ++APE +S       G A+D 
Sbjct: 191 DALLS---------------------------NTVGTPAFMAPESLSETRKIFSGKALDV 223

Query: 342 WTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR 401
           W +G+ ++   +G  PF         + + ++ALEFP +P +    KDLI ++L K+P  
Sbjct: 224 WAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPES 283

Query: 402 RMGSKMGATAIKRHQFFN 419
           R+   +    IK H +  
Sbjct: 284 RI--VV--PEIKLHPWVT 297

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  133 bits (337), Expect = 4e-36
 Identities = 57/349 (16%), Positives = 112/349 (32%), Gaps = 88/349 (25%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            ++   + ++GSG+ GSV+          +GC +A K   K    S ++++  R      
Sbjct: 10  TTEFHELEKIGSGEFGSVFKC----VKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHA 65

Query: 141 EMLDHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVL--RQRQPDKRFHESAVRFY 193
            +  H  +   ++      W+      +  E+C GG L        +    F E+ ++  
Sbjct: 66  VLGQHSHVVRYFSA-----WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDL 120

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS-TAQLVSDQS 252
             +V   L ++H M +++ D+KP N+ +           +       S     ++     
Sbjct: 121 LLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKI----- 175

Query: 253 PPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD 312
              GD             G+                        ++ +P           
Sbjct: 176 ---GD------------LGHV----------------------TRISSP----------- 187

Query: 313 VRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGID--HELTLAN 369
                  G   +LA E++     H    D + L + +          +  D  HE+    
Sbjct: 188 ---QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEI---- 240

Query: 370 VVARALEFPKEPSV-PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF 417
              R    P+ P V      +L+  ++  DP RR      A A+ +H  
Sbjct: 241 ---RQGRLPRIPQVLSQEFTELLKVMIHPDPERR----PSAMALVKHSV 282

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  134 bits (340), Expect = 1e-35
 Identities = 67/385 (17%), Positives = 114/385 (29%), Gaps = 128/385 (33%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
                LG G   +V+  + K      G  FA KV +               E E+L+ L+
Sbjct: 12  LLSDILGQGATANVFRGRHKK----TGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLN 65

Query: 145 HPFLPTLYATLDCP--RWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVAL 201
           H  +  L+A  +    R   L+ EFCP G L  VL +        ES       +VV  +
Sbjct: 66  HKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGM 125

Query: 202 EFLHMMGIIYRDLKPENVLVRS----DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
             L   GI++R++KP N++            LTDF  + + ++                 
Sbjct: 126 NHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE--------------- 170

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
                          S                            GT E +          
Sbjct: 171 ------------QFVSLY--------------------------GTEEYLH--------- 183

Query: 318 FVGTHEYLAPEIISG--------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN 369
                    P++           + +G  VD W++G+  +    G+ PF+  +       
Sbjct: 184 ---------PDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKE 234

Query: 370 VVARAL-----------------------EFPKEPSVPGPAKD----LIAQLLVKDPTRR 402
           V+ + +                       + P   S+    +     ++A +L  D  + 
Sbjct: 235 VMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKC 294

Query: 403 MGSKMGATAIKRHQFFNGVNWALLR 427
            G           QFF   +  L R
Sbjct: 295 WGFD---------QFFAETSDILHR 310

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  132 bits (333), Expect = 3e-35
 Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 11/215 (5%)

Query: 33  SGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGS 92
           SG +  +        H   PR       +A +   S G + +          + + RLG 
Sbjct: 9   SGVDLGTENLYFQSMHQLQPRRVSFRG-EASETLQSPGYDPSRPESFFQQSFQRLSRLGH 67

Query: 93  GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTL 151
           G  G V+ V    +S  +G  +A K         +++  R   E    E +  HP    L
Sbjct: 68  GSYGEVFKV----RSKEDGRLYAVKRSMSPFRGPKDRA-RKLAEVGSHEKVGQHPCCVRL 122

Query: 152 YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIY 211
               +      L TE C G  L    +        E+ V  Y  + ++AL  LH  G+++
Sbjct: 123 EQAWEEGGILYLQTELC-GPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQGLVH 180

Query: 212 RDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTST 244
            D+KP N+ +   G   L DF L   L    +   
Sbjct: 181 LDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEV 215

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 16/106 (15%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID--HELTLANVVARA 374
              G   Y+APE++ G  +G A D ++LG+ I E+        G +   +L       R 
Sbjct: 215 VQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL-------RQ 266

Query: 375 LEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
              P E    +    + ++  +L  DP  R      A A+      
Sbjct: 267 GYLPPEFTAGLSSELRSVLVMMLEPDPKLR----ATAEALLALPVL 308

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  129 bits (326), Expect = 3e-34
 Identities = 65/372 (17%), Positives = 111/372 (29%), Gaps = 118/372 (31%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEM 142
                LG G   +V+  + K      G  FA KV +                RE  +L+ 
Sbjct: 12  LLSDILGQGATANVFRGRHKK----TGDLFAIKVFNNISF----LRPVDVQMREFEVLKK 63

Query: 143 LDHPFLPTLYATLDCP--RWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVV 199
           L+H  +  L+A  +    R   L+ EFCP G L  VL +        ES       +VV 
Sbjct: 64  LNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVG 123

Query: 200 ALEFLHMMGIIYRDLKPENVLVRS----DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
            +  L   GI++R++KP N++            LTDF  + + ++               
Sbjct: 124 GMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE------------- 170

Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA-EPLDVR 314
                            S                            GT E +  +  +  
Sbjct: 171 --------------QFVSLY--------------------------GTEEYLHPDMYERA 190

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR- 373
            +      +Y           G  VD W++G+  +    G+ PF+  +       V+ + 
Sbjct: 191 VLRKDHQKKY-----------GATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI 239

Query: 374 ----------------------ALEFPKEPSVPGPAKD----LIAQLLVKDPTRRMGSKM 407
                                 + + P   S+    +     ++A +L  D  +  G   
Sbjct: 240 ITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFD- 298

Query: 408 GATAIKRHQFFN 419
                   QFF 
Sbjct: 299 --------QFFA 302

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  126 bits (320), Expect = 1e-33
 Identities = 69/341 (20%), Positives = 119/341 (34%), Gaps = 90/341 (26%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEM 142
             V  LG G  G V L      +       A K++D +  V    +    I++EI   +M
Sbjct: 10  DLVQTLGEGAYGEVQLA----VNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKM 61

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVA 200
           L+H  +   Y          L  E+C GG+L   +     PD    E   + +  +++  
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE----PDIGMPEPDAQRFFHQLMAG 117

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQP 260
           + +LH +GI +RD+KPEN+L+         D   +LK          +SD          
Sbjct: 118 VVYLHGIGITHRDIKPENLLL---------DERDNLK----------ISD---------- 148

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
                    FG                          L            L+       G
Sbjct: 149 ---------FG--------------------------LATVFRYNNRERLLN----KMCG 169

Query: 321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFP 378
           T  Y+APE++     H   VD W+ GI +  +  G  P+          ++   +     
Sbjct: 170 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN 229

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
               +      L+ ++LV++P+ R+        IK+ +++N
Sbjct: 230 PWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWYN 266

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score =  126 bits (318), Expect = 6e-33
 Identities = 72/379 (18%), Positives = 131/379 (34%), Gaps = 95/379 (25%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEM 142
             V  LG G  G V L      +       A K++D +  V    +    I++EI   +M
Sbjct: 10  DLVQTLGEGAYGEVQLA----VNRVTEEAVAVKIVDMKRAV----DCPENIKKEICINKM 61

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVA 200
           L+H  +   Y          L  E+C GG+L   +     PD    E   + +  +++  
Sbjct: 62  LNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE----PDIGMPEPDAQRFFHQLMAG 117

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQP 260
           + +LH +GI +RD+KPEN+L+         D   +LK          +SD          
Sbjct: 118 VVYLHGIGITHRDIKPENLLL---------DERDNLK----------ISD---------- 148

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
                    FG                          L            L+       G
Sbjct: 149 ---------FG--------------------------LATVFRYNNRERLLN----KMCG 169

Query: 321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFP 378
           T  Y+APE++     H   VD W+ GI +  +  G  P+          ++   +     
Sbjct: 170 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN 229

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN-GVNWALLRCAKPPFIPRP 437
               +      L+ ++LV++P+ R+        IK+ +++N  +        K P +   
Sbjct: 230 PWKKIDSAPLALLHKILVENPSARITIP----DIKKDRWYNKPLKKGA----KRPRVTSG 281

Query: 438 VTCRDLTTTNSSIDNSIEY 456
                 +  +  I +++++
Sbjct: 282 GVSESPSGFSKHIQSNLDF 300

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  124 bits (313), Expect = 1e-32
 Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 92/335 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V +     +    G   A K+++++++ S +   +  I+REI  L++  HP 
Sbjct: 19  LGVGTFGKVKI----GEHQLTGHKVAVKILNRQKIRSLDVVGK--IKREIQNLKLFRHPH 72

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  LY  +  P    ++ E+  GG+L  ++ +      R  E   R    +++ A+++ H
Sbjct: 73  IIKLYQVISTPTDFFMVMEYVSGGELFDYICKH----GRVEEMEARRLFQQILSAVDYCH 128

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAV 265
              +++RDLKPENVL+         D  ++ K          ++D               
Sbjct: 129 RHMVVHRDLKPENVLL---------DAHMNAK----------IAD--------------- 154

Query: 266 DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL 325
               FG S+ +     +   SC              G+P                   Y 
Sbjct: 155 ----FGLSNMMSDGEFL-RTSC--------------GSPN------------------YA 177

Query: 326 APEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVP 384
           APE+ISG    G  VD W+ G+ ++ L  GT PF   +H  TL   +     F     + 
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDD-EHVPTLFKKIRGG-VFYIPEYLN 235

Query: 385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
                L+  +L  DP +R   K     I+ H++F 
Sbjct: 236 RSVATLLMHMLQVDPLKRATIK----DIREHEWFK 266

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  123 bits (312), Expect = 3e-32
 Identities = 75/342 (21%), Positives = 117/342 (34%), Gaps = 102/342 (29%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML----DH 145
           LG G    V               +A K+++K+         R+R+ RE+ EML     H
Sbjct: 21  LGEGAHARVQTCINLI----TSQEYAVKIIEKQPG-----HIRSRVFREV-EMLYQCQGH 70

Query: 146 PFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEF 203
             +  L    +      L+ E   GG +  H+ ++    + F+E        +V  AL+F
Sbjct: 71  RNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKR----RHFNELEASVVVQDVASALDF 126

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
           LH  GI +RDLKPEN+L               +K          + D             
Sbjct: 127 LHNKGIAHRDLKPENILCEHPNQ------VSPVK----------ICD------------- 157

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
                 F   S I  N                          I    L    ++  G+ E
Sbjct: 158 ------FDLGSGIKLN---------------------GDCSPISTPEL----LTPCGSAE 186

Query: 324 YLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA---- 374
           Y+APE++         +    D W+LG+ ++ L  G  PF G        +         
Sbjct: 187 YMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ 246

Query: 375 -----------LEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
                       EFP +    +   AKDLI++LLV+D  +R+
Sbjct: 247 NMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRL 288

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  121 bits (306), Expect = 4e-31
 Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES 131
              N    ++     + ++G G  G   LV+       +G  +  K ++   + S+ +E 
Sbjct: 14  GTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTE----DGRQYVIKEINISRMSSKEREE 69

Query: 132 RARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVR 191
            +R E  +L  + HP +     + +      ++ ++C GGDL      Q    F E  + 
Sbjct: 70  -SRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQIL 128

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            +  ++ +AL+ +H   I++RD+K +N+ +  DG + L DF ++   +++   A+
Sbjct: 129 DWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELAR 183

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 74.7 bits (184), Expect = 7e-15
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + +GT  YL+PEI   + + N  D W LG  ++EL      F+    +  +  +++    
Sbjct: 184 ACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISG--S 241

Query: 377 FPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           FP          + L++QL  ++P  R        +I    F 
Sbjct: 242 FPPVSLHYSYDLRSLVSQLFKRNPRDR----PSVNSILEKGFI 280

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  115 bits (291), Expect = 4e-29
 Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 93/335 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V L    +         A K + ++ L   +   R  +EREI  L++L HP 
Sbjct: 17  LGEGSFGKVKL----ATHYKTQQKVALKFISRQLLKKSDMHMR--VEREISYLKLLRHPH 70

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  LY  +  P    ++ E+  GG+L  +++ +    KR  E   R +  +++ A+E+ H
Sbjct: 71  IIKLYDVITTPTDIVMVIEYA-GGELFDYIVEK----KRMTEDEGRRFFQQIICAIEYCH 125

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAV 265
              I++RDLKPEN+         L D +L++K          ++D               
Sbjct: 126 RHKIVHRDLKPENL---------LLDDNLNVK----------IAD--------------- 151

Query: 266 DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYL 325
               FG S+ +     +   SC              G+P                   Y 
Sbjct: 152 ----FGLSNIMTDGNFL-KTSC--------------GSPN------------------YA 174

Query: 326 APEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVP 384
           APE+I+G+   G  VD W+ GI ++ +  G  PF   +    L   V     +     + 
Sbjct: 175 APEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD-EFIPNLFKKVNSC-VYVMPDFLS 232

Query: 385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             A+ LI +++V DP +R+  +     I+R  +FN
Sbjct: 233 PGAQSLIRRMIVADPMQRITIQ----EIRRDPWFN 263

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  116 bits (293), Expect = 7e-29
 Identities = 66/356 (18%), Positives = 116/356 (32%), Gaps = 87/356 (24%)

Query: 71  NNNNNNNPLTLSDLRFV--HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN 128
           + +   + + +  + F     LG G  G++       +   +    A K +         
Sbjct: 11  DGDEETSVVIVGKISFCPKDVLGHGAEGTIVY-----RGMFDNRDVAVKRILPE------ 59

Query: 129 KESRARIEREILEMLD-HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHE 187
             S A  E ++L   D HP +   + T    ++  +  E C    L    + Q D     
Sbjct: 60  CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC-AATLQEYVE-QKDFAHLG 117

Query: 188 SAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
                   +    L  LH + I++RDLKP N+L+                  +    A +
Sbjct: 118 LEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISM-------------PNAHGKIKA-M 163

Query: 248 VSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV 307
           +SD                   FG                        KKL         
Sbjct: 164 ISD-------------------FGLC----------------------KKLAVG------ 176

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGN---AVDWWTLG-IFIFELFYGTTPFKGIDH 363
                 R     GT  ++APE++S +   N    VD ++ G +F + +  G+ PF     
Sbjct: 177 -RHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ 235

Query: 364 ELTLANVVARALEFPKEPSVPGP-AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
                 + A +L+           A++LI +++  DP +R      A  + +H FF
Sbjct: 236 RQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKR----PSAKHVLKHPFF 287

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  114 bits (288), Expect = 9e-29
 Identities = 65/399 (16%), Positives = 120/399 (30%), Gaps = 91/399 (22%)

Query: 22  TNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTL 81
           + S S     +  S   + +  +AK     P   D+         T +    +      +
Sbjct: 2   SGSVSSGQAHSLASLAKTWSSGSAKLQRLGPETEDN----EGVLLTEKLKPVDYEYREEV 57

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             +    R+G G  G V+    + K    G   A K +                E     
Sbjct: 58  HWMTHQPRVGRGSFGEVH----RMKDKQTGFQCAVKKVRLEVFRVE--------ELVACA 105

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L  P +  LY  +    W  +  E   GG L  L ++       E    +Y  + +  L
Sbjct: 106 GLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGL 163

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
           E+LH   I++ D+K +N        ++L+                 + D           
Sbjct: 164 EYLHTRRILHGDVKADN--------VLLSSDGSRAA----------LCD----------- 194

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                   FG++ C+ P+ +  ++                                  GT
Sbjct: 195 --------FGHALCLQPDGLGKSLL---------------------------TGDYIPGT 219

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
             ++APE++ G+     VD W+    +  +  G  P+           + +      + P
Sbjct: 220 ETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIP 279

Query: 382 SVPGP-AKDLIAQLLVKDPTRRMGSKMGATAIK--RHQF 417
               P     I + L K+P  R      A+A++  R   
Sbjct: 280 PSCAPLTAQAIQEGLRKEPVHR------ASAMELRRKVG 312

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  113 bits (286), Expect = 1e-28
 Identities = 75/336 (22%), Positives = 119/336 (35%), Gaps = 92/336 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G VY      +  +N    A K + +R     +      +  EI   + L H  
Sbjct: 30  LGKGTYGIVY----AGRDLSNQVRIAIKEIPER-----DSRYSQPLHEEIALHKHLKHKN 80

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +     +     +  +  E  PGG L  +LR +    + +E  + FY  +++  L++LH 
Sbjct: 81  IVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 140

Query: 207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVD 266
             I++RD+K +N        +++  +   LK          +SD                
Sbjct: 141 NQIVHRDIKGDN--------VLINTYSGVLK----------ISD---------------- 166

Query: 267 QPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLA 326
              FG S                      K+L                + +F GT +Y+A
Sbjct: 167 ---FGTS----------------------KRLAGINP----------CTETFTGTLQYMA 191

Query: 327 PEII--SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP-SV 383
           PEII     G+G A D W+LG  I E+  G  PF  +         V      P+ P S+
Sbjct: 192 PEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESM 251

Query: 384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIK--RHQF 417
              AK  I +    DP +R      A A      +F
Sbjct: 252 SAEAKAFILKCFEPDPDKR------ACANDLLVDEF 281

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  113 bits (285), Expect = 1e-28
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 77  NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE 136
           +     D + +  +GSG  G V+  + +     +G  +  K +            +A  E
Sbjct: 6   DKRFGMDFKEIELIGSGGFGQVFKAKHRI----DGKTYVIKRVKY-------NNEKAERE 54

Query: 137 REILEMLDHP--------FLPTLYATLDCPRWS--------CLLTEFCPGGDLHVLRQRQ 180
            + L  LDH         +    Y      + S         +  EFC  G L    +++
Sbjct: 55  VKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKR 114

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKG 238
             ++  +        ++   ++++H   +I RDLKP N+ +     + + DF L   LK 
Sbjct: 115 RGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKN 174

Query: 239 DNSTST 244
           D   + 
Sbjct: 175 DGKRTR 180

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D +     GT  Y++PE IS + +G  VD + LG+ + EL +                  
Sbjct: 175 DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS------KFF 228

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               +           K L+ +LL K P  R       + I R    
Sbjct: 229 TDLRDGIISDIFDKKEKTLLQKLLSKKPEDR----PNTSEILRTLTV 271

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  113 bits (286), Expect = 1e-28
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 6/187 (3%)

Query: 62  AIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK 121
            + +   +     +    TL++ R   ++G G    VY          +G   A K +  
Sbjct: 12  PVPQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRA----ACLLDGVPVALKKVQI 67

Query: 122 RELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL--RQR 179
            +L+     +    E ++L+ L+HP +   YA+        ++ E    GDL  +    +
Sbjct: 68  FDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFK 127

Query: 180 QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD 239
           +  +   E  V  Y  ++  ALE +H   +++RD+KP NV + + G + L D  L     
Sbjct: 128 KQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187

Query: 240 NSTSTAQ 246
           + T+ A 
Sbjct: 188 SKTTAAH 194

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
           S VGT  Y++PE I   G+    D W+LG  ++E+    +PF G   ++ L ++  +   
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYG--DKMNLYSLCKKIEQ 252

Query: 376 -EFPKEPS--VPGPAKDLIAQLLVKDPTRR 402
            ++P  PS       + L+   +  DP +R
Sbjct: 253 CDYPPLPSDHYSEELRQLVNMCINPDPEKR 282

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  112 bits (283), Expect = 2e-28
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 78  PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
           P    D   ++ +G+G  G    ++ KS    +G     K +D   +    K+     E 
Sbjct: 2   PSRAEDYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQM-LVSEV 56

Query: 138 EILEMLDHPFLPTLYATLDCPRWS--CLLTEFCPGGDLHVL--RQRQPDKRFHESAVRFY 193
            +L  L HP +   Y  +     +   ++ E+C GGDL  +  +  +  +   E  V   
Sbjct: 57  NLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRV 116

Query: 194 ASEVVVALEFLH-----MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
            +++ +AL+  H        +++RDLKP NV +    ++ L DF L+   ++ TS A+
Sbjct: 117 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK 174

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KLG+ G   I+         +FVGT  Y++PE ++   +    D W+LG  ++EL     
Sbjct: 156 KLGDFGLARILNHDTSFAK-TFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP 214

Query: 357 PFKGIDHELTLANVVARALEFPKEPSV-PGPAKDLIAQLLVKDPTRR 402
           PF     +  LA  +    +F + P        ++I ++L      R
Sbjct: 215 PFTAFSQK-ELAGKIREG-KFRRIPYRYSDELNEIITRMLNLKDYHR 259

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  113 bits (285), Expect = 2e-28
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 19/154 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G+ G V+     S    +   + AK +  +         +  +++E  IL +  H  
Sbjct: 13  LGRGEFGIVHRCVETS----SKKTYMAKFVKVK------GTDQVLVKKEISILNIARHRN 62

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH--ESAVRFYASEVVVALEFLH 205
           +  L+ + +      ++ EF  G D+    +R     F   E  +  Y  +V  AL+FLH
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIF---ERINTSAFELNEREIVSYVHQVCEALQFLH 119

Query: 206 MMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLK 237
              I + D++PEN++ ++     I + +F  + +
Sbjct: 120 SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ 153

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
               EY APE+   +    A D W+LG  ++ L  G  PF    ++  + N++     F 
Sbjct: 164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFD 223

Query: 379 KEP--SVPGPAKDLIAQLLVKDPTRRM 403
           +E    +   A D + +LLVK+   RM
Sbjct: 224 EEAFKEISIEAMDFVDRLLVKERKSRM 250

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  111 bits (281), Expect = 4e-28
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIERE--ILEMLDHP 146
           LGSG    V   + K      G  +AAK + KR L S R   SR  IERE  IL  + HP
Sbjct: 13  LGSGQFAIVRKCRQKG----TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHP 68

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLH 205
            + TL+   +      L+ E   GG+L          +   E     +  +++  + +LH
Sbjct: 69  NIITLHDIFENKTDVVLILELVSGGELF---DFLAEKESLTEDEATQFLKQILDGVHYLH 125

Query: 206 MMGIIYRDLKPENVLVRS----DGHIMLTDFDLS 235
              I + DLKPEN+++      +  I L DF ++
Sbjct: 126 SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
             GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TL N+ A   +F
Sbjct: 171 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDF 230

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
            +E   +    AKD I +LLVKDP RRM
Sbjct: 231 DEEYFSNTSELAKDFIRRLLVKDPKRRM 258

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  114 bits (286), Expect = 6e-28
 Identities = 75/367 (20%), Positives = 127/367 (34%), Gaps = 91/367 (24%)

Query: 72  NNNNNNPLTLSDLRFVHR-LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE 130
            N  N   +L +L    + LG G  G+V       + S  G   A K M           
Sbjct: 4   ANIPNFEQSLKNLVVSEKILGYGSSGTVVF-----QGSFQGRPVAVKRMLID------FC 52

Query: 131 SRARIEREIL-EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL-----RQRQPDKR 184
             A +E ++L E  DHP +   Y +    R+  +  E C   +L  L        +  K 
Sbjct: 53  DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC-NLNLQDLVESKNVSDENLKL 111

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
             E        ++   +  LH + II+RDLKP+N+LV +      +    + +   + + 
Sbjct: 112 QKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVST------SSRFTADQQTGAENL 165

Query: 245 AQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP 304
             L+SD                   FG                        KKL +  + 
Sbjct: 166 RILISD-------------------FGLC----------------------KKLDSGQSS 184

Query: 305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGH-------GNAVDWWTLG-IFIFELFYGTT 356
                       +  GT  + APE++    +         ++D +++G +F + L  G  
Sbjct: 185 ------FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGP-----AKDLIAQLLVKDPTRRMGSKMGATA 411
           PF   D     +N++       +   +        A DLI+Q++  DP +R      A  
Sbjct: 239 PFG--DKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKR----PTAMK 292

Query: 412 IKRHQFF 418
           + RH  F
Sbjct: 293 VLRHPLF 299

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  111 bits (281), Expect = 7e-28
 Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-SRNKESRARIERE--ILEMLDHP 146
           LGSG    V   + KS     G  +AAK + KR+   SR   SR  IERE  IL  + H 
Sbjct: 20  LGSGQFAIVKKCREKS----TGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHH 75

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLH 205
            + TL+   +      L+ E   GG+L          +   E     +  +++  + +LH
Sbjct: 76  NVITLHDVYENRTDVVLILELVSGGELF---DFLAQKESLSEEEATSFIKQILDGVNYLH 132

Query: 206 MMGIIYRDLKPENVLVRS----DGHIMLTDFDLS 235
              I + DLKPEN+++        HI L DF L+
Sbjct: 133 TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
             GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLAN+ + + +F
Sbjct: 178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDF 237

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
            +E        AKD I +LLVK+  +R+
Sbjct: 238 DEEFFSHTSELAKDFIRKLLVKETRKRL 265

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  111 bits (281), Expect = 7e-28
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-SRNKESRARIERE--ILEMLDHP 146
           LGSG    V   + KS     G  +AAK + KR    SR   SR  IERE  IL+ + HP
Sbjct: 19  LGSGQFAVVKKCREKS----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHP 74

Query: 147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLH 205
            + TL+   +      L+ E   GG+L          +   E     +  +++  + +LH
Sbjct: 75  NVITLHEVYENKTDVILILELVAGGELF---DFLAEKESLTEEEATEFLKQILNGVYYLH 131

Query: 206 MMGIIYRDLKPENVLVRS----DGHIMLTDFDLSLK 237
            + I + DLKPEN+++         I + DF L+ K
Sbjct: 132 SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK 167

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
             GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A   EF
Sbjct: 177 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEF 236

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
             E   +    AKD I +LLVKDP +RM
Sbjct: 237 EDEYFSNTSALAKDFIRRLLVKDPKKRM 264

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  110 bits (278), Expect = 8e-28
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            + D +  + LG G    VY      +S + G   A K++DK+ +       R + E +I
Sbjct: 9   KIEDFKVGNLLGKGSFAGVYRA----ESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKI 64

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
              L HP +  LY   +   +  L+ E C  G++   L+ R   K F E+  R +  +++
Sbjct: 65  HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQII 122

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH  GI++RDL   N+L+  + +I + DF L+
Sbjct: 123 TGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 94.9 bits (237), Expect = 4e-22
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
           GT  Y++PEI +   HG   D W+LG   + L  G  PF     + TL  VV    E P 
Sbjct: 174 GTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMP- 232

Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
              +   AKDLI QLL ++P  R    +  +++  H F +
Sbjct: 233 -SFLSIEAKDLIHQLLRRNPADR----LSLSSVLDHPFMS 267

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  109 bits (274), Expect = 5e-27
 Identities = 62/331 (18%), Positives = 107/331 (32%), Gaps = 98/331 (29%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
             ++     +G G  G V       K+       A K +        ++  R     E  
Sbjct: 7   YKEIEVEEVVGRGAFGVVC------KAKWRAKDVAIKQI-------ESESERKAFIVELR 53

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
            L  ++HP +  LY    C    CL+ E+  GG L+ VL   +P   +  +    +  + 
Sbjct: 54  QLSRVNHPNIVKLYGA--CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQC 111

Query: 198 VVALEFLHMM---GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
              + +LH M    +I+RDLKP N        ++L      LK          + D    
Sbjct: 112 SQGVAYLHSMQPKALIHRDLKPPN--------LLLVAGGTVLK----------ICD---- 149

Query: 255 TGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR 314
                          FG ++C I                                     
Sbjct: 150 ---------------FG-TACDIQT----------------------------------H 159

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
             +  G+  ++APE+  G  +    D ++ GI ++E+     PF  I             
Sbjct: 160 MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHN 219

Query: 375 ---LEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                  K  ++P P + L+ +   KDP++R
Sbjct: 220 GTRPPLIK--NLPKPIESLMTRCWSKDPSQR 248

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  108 bits (272), Expect = 6e-27
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 15/153 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LGSG  G V+LV+ +S    +G     K ++K     R++    +IE E  +L+ LDHP 
Sbjct: 30  LGSGAFGDVHLVEERS----SGLERVIKTINKD----RSQVPMEQIEAEIEVLKSLDHPN 81

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  ++   +      ++ E C GG+L   ++  +   K   E  V     +++ AL + H
Sbjct: 82  IIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH 141

Query: 206 MMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
              ++++DLKPEN+L +       I + DF L+
Sbjct: 142 SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA 174

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +  GT  Y+APE+   +      D W+ G+ ++ L  G  PF G   E        +   
Sbjct: 185 NAAGTALYMAPEVFKRD-VTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPN 243

Query: 377 FPKEP-SVPGPAKDLIAQLLVKDPTRRM 403
           +  E   +   A DL+ Q+L KDP RR 
Sbjct: 244 YAVECRPLTPQAVDLLKQMLTKDPERRP 271

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  108 bits (272), Expect = 1e-26
 Identities = 62/329 (18%), Positives = 117/329 (35%), Gaps = 88/329 (26%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
             DL    ++G+G  G+V+      ++  +G   A K++ +++  +       R E  I+
Sbjct: 36  WCDLNIKEKIGAGSFGTVH------RAEWHGSDVAVKILMEQDFHAERVNEFLR-EVAIM 88

Query: 141 EMLDHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
           + L HP +     A    P    ++TE+   G L+ +L +    ++  E      A +V 
Sbjct: 89  KRLRHPNIVLFMGAVTQPPNL-SIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147

Query: 199 VALEFLHMMG--IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTG 256
             + +LH     I++R+LK  N+         L D   ++K          V D      
Sbjct: 148 KGMNYLHNRNPPIVHRNLKSPNL---------LVDKKYTVK----------VCD------ 182

Query: 257 DQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM 316
                        FG             +S L                        + S 
Sbjct: 183 -------------FG-------------LSRLKAST-------------------FLSSK 197

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-- 374
           S  GT E++APE++  E      D ++ G+ ++EL     P+  ++    +   V     
Sbjct: 198 SAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP-AQVVAAVGFKCK 256

Query: 375 -LEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            LE P+  ++      +I      +P +R
Sbjct: 257 RLEIPR--NLNPQVAAIIEGCWTNEPWKR 283

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  106 bits (268), Expect = 3e-26
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEM 142
             V  LG G  G V   + +         +A KV++K    +++      I RE  +L+ 
Sbjct: 25  NIVCMLGKGSFGEVLKCKDRI----TQQEYAVKVINKASAKNKDTS---TILREVELLKK 77

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVAL 201
           LDHP +  L+  L+      ++ E   GG+L   + +R   KRF E        +V   +
Sbjct: 78  LDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGI 134

Query: 202 EFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLV 248
            ++H   I++RDLKPEN+L+ S   D  I + DF LS     +T     +
Sbjct: 135 TYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRI 184

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
             +GT  Y+APE++ G  +    D W+ G+ ++ L  GT PF G +    L  V      
Sbjct: 182 DRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYA 240

Query: 377 FPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           F      ++   AKDLI ++L   P+ R+
Sbjct: 241 FDLPQWRTISDDAKDLIRKMLTFHPSLRI 269

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  106 bits (266), Expect = 4e-26
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 16/152 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G    V     K+     G  FAAK+++ ++L +R+ +   ++ERE  I   L HP 
Sbjct: 14  LGKGAFSVVRRCVHKT----TGLEFAAKIINTKKLSARDFQ---KLEREARICRKLQHPN 66

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  L+ ++    +  L+ +   GG+L   +  R   + + E+       +++ ++ + H 
Sbjct: 67  IVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHS 123

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
            GI++R+LKPEN+L+ S      + L DF L+
Sbjct: 124 NGIVHRNLKPENLLLASKAKGAAVKLADFGLA 155

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 226

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           P     +V   AK LI  +L  +P +R+
Sbjct: 227 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 254

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  107 bits (269), Expect = 6e-26
 Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 18/239 (7%)

Query: 8   TAEDPDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEAT 67
             E            N   E       S     + SA     A    +  P         
Sbjct: 16  NKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQ 75

Query: 68  SEGNNNNNNNPLTLSDLR----FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE 123
           S G  +   +     +          +G G    V     ++     G  FA K+M+   
Sbjct: 76  SMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRA----TGHEFAVKIMEVTA 131

Query: 124 LVSRN---KESRARIERE--ILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVL 176
                   +E R    RE  IL  +  HP + TL  + +   +  L+ +    G+L   L
Sbjct: 132 ERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYL 191

Query: 177 RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++       E   R     ++ A+ FLH   I++RDLKPEN+L+  +  I L+DF  S
Sbjct: 192 TEK---VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS 247

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 318 FVGTHEYLAPEIISG------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
             GT  YLAPEI+         G+G  VD W  G+ +F L  G+ PF      L L  ++
Sbjct: 259 LCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIM 318

Query: 372 ARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
               +F            KDLI++LL  DP  R+
Sbjct: 319 EGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARL 352

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score =  105 bits (263), Expect = 1e-25
 Identities = 75/370 (20%), Positives = 128/370 (34%), Gaps = 104/370 (28%)

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE 130
           +++     +   D      +GSG    V      +  +      A K ++    + + + 
Sbjct: 4   DSSALPWSINRDDYELQEVIGSGATAVVQ----AAYCAPKKEKVAIKRIN----LEKCQT 55

Query: 131 SRARIEREILEM--LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDL-HVLRQRQPD--- 182
           S   + +EI  M    HP + + Y +  +    W  L+ +   GG +  +++        
Sbjct: 56  SMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW--LVMKLLSGGSVLDIIKHIVAKGEH 113

Query: 183 --KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
                 ES +     EV+  LE+LH  G I+RD+K  N+L+  DG + + D         
Sbjct: 114 KSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIAD--------- 164

Query: 241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN 300
                                        FG S+ +         +     R + +K   
Sbjct: 165 -----------------------------FGVSAFL--------ATGGDITRNKVRK--- 184

Query: 301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFK 359
                           +FVGT  ++APE++    G+    D W+ GI   EL  G  P+ 
Sbjct: 185 ----------------TFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYH 228

Query: 360 GIDH----ELTLANVVARALEFPKEPSVPG-----PAKDLIAQLLVKDPTRRMGSKMGAT 410
                    LTL N     LE   +            + +I+  L KDP +R       T
Sbjct: 229 KYPPMKVLMLTLQNDPPS-LETGVQDKEMLKKYGKSFRKMISLCLQKDPEKR------PT 281

Query: 411 AIK--RHQFF 418
           A +  RH+FF
Sbjct: 282 AAELLRHKFF 291

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  109 bits (272), Expect = 1e-25
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEM 142
               RLG+G  G V     +      G   A K   +      + ++R R   E  I++ 
Sbjct: 17  EMKERLGTGGFGYVLRWIHQD----TGEQVAIKQCRQE----LSPKNRERWCLEIQIMKK 68

Query: 143 LDHPFLPTLYATLDCP------RWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYAS 195
           L+HP + +     D            L  E+C GGDL   L Q +      E  +R   S
Sbjct: 69  LNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLS 128

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLS 235
           ++  AL +LH   II+RDLKPEN++++         + D   +
Sbjct: 129 DISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA 171

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 70.5 bits (172), Expect = 4e-13
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 26/128 (20%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR--- 373
            FVGT +YLAPE++  + +   VD+W+ G   FE   G  PF      +     V     
Sbjct: 182 EFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSN 241

Query: 374 -----------ALEFPKEPSVPGP--------AKDLIAQLLVKDPTRRMGSKMGATAIKR 414
                      A++F      P           +  +  +L+    +R            
Sbjct: 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDP----QNPN 297

Query: 415 HQFFNGVN 422
              F  ++
Sbjct: 298 VGCFQALD 305

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  106 bits (267), Expect = 2e-25
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 20/175 (11%)

Query: 72  NNNNNNPLTLSDL-RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV---SR 127
           ++ +  P  L D       LGSG  G V L   +          A +++ KR+     +R
Sbjct: 124 DDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERK----TCKKVAIRIISKRKFAIGSAR 179

Query: 128 NKESRARIERE--ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDK 183
             +    +E E  IL+ L+HP +  +    D   +  ++ E   GG+L   V+      K
Sbjct: 180 EADPALNVETEIEILKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGN----K 234

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           R  E+  + Y  ++++A+++LH  GII+RDLKPENVL+ S   D  I +TDF  S
Sbjct: 235 RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS 289

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 318 FVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
             GT  YLAPE++      G+  AVD W+LG+ +F    G  PF     +++L + +   
Sbjct: 301 LCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG 360

Query: 375 -LEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
              F  E    V   A DL+ +LLV DP  R 
Sbjct: 361 KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 392

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  105 bits (263), Expect = 2e-25
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS---RNKESRARIERE--I 139
                LGSG  G V L   +          A K++ KR+      R  +    +E E  I
Sbjct: 13  IMSKTLGSGACGEVKLAFERK----TCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
           L+ L+HP +  +    D   +  ++ E   GG+L   +   +   R  E+  + Y  +++
Sbjct: 69  LKKLNHPCIIKIKNFFDAEDY-YIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQML 124

Query: 199 VALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           +A+++LH  GII+RDLKPENVL+ S   D  I +TDF  S
Sbjct: 125 LAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHS 164

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 318 FVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
             GT  YLAPE++      G+  AVD W+LG+ +F    G  PF     +++L + +   
Sbjct: 176 LCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSG 235

Query: 375 -LEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
              F  E    V   A DL+ +LLV DP  R 
Sbjct: 236 KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF 267

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  104 bits (261), Expect = 3e-25
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN----KESRARIERE--ILEML 143
           LG G    V     K         +A K++D     S +    +E R    +E  IL  +
Sbjct: 25  LGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV 80

Query: 144 D-HPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVAL 201
             HP +  L  T +   +  L+ +    G+L   L ++       E   R     ++  +
Sbjct: 81  SGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVI 137

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTA 245
             LH + I++RDLKPEN+L+  D +I LTDF  S  L         
Sbjct: 138 CALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV 183

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 76.9 bits (190), Expect = 7e-16
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 318 FVGTHEYLAPEIISG------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
             GT  YLAPEII         G+G  VD W+ G+ ++ L  G+ PF      L L  ++
Sbjct: 183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIM 242

Query: 372 ARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRMGSKMGATA--IKRHQFFNGVNWALLR 427
           +   +F            KDL+++ LV  P +R       TA     H FF       +R
Sbjct: 243 SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY------TAEEALAHPFFQQYVVEEVR 296

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  105 bits (262), Expect = 5e-25
 Identities = 49/363 (13%), Positives = 91/363 (25%), Gaps = 94/363 (25%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
            L+ V  L  GD   V+LV+           FA KV       SR++  R          
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVE----RLEDFALKVFTMGAENSRSELERLHEATFAAAR 118

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           L                            D   ++ + P  +       +  +  ++ + 
Sbjct: 119 LLGESPEEARDRR----------RLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMP 168

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFD--LSLKGDNSTSTAQLVSDQSPPTGDQQP 260
                                D  ++ +  D     +GD       +++ Q         
Sbjct: 169 -----------------AASVDLELLFSTLDFVYVFRGDEGILALHILTAQ--------- 202

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR---RRKK------------KLGNPGTPE 305
                               ++   + L  K                     LG+     
Sbjct: 203 --------------------LIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSA-- 240

Query: 306 IVAEPLDVRSMSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGID- 362
                +  R  +      Y   E ++       +A++ W LG+ I+ ++    PF  +  
Sbjct: 241 --LWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP 298

Query: 363 ------HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ 416
                    +L      +L F     +P   K LI + L  D  RR    +         
Sbjct: 299 GIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRR----LLPLEAMETP 354

Query: 417 FFN 419
            F 
Sbjct: 355 EFL 357

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  104 bits (262), Expect = 6e-25
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 16/152 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G    V     K+     G  FAAK+++ ++L +R+ +   ++ERE  I   L HP 
Sbjct: 37  LGKGAFSVVRRCVHKT----TGLEFAAKIINTKKLSARDFQ---KLEREARICRKLQHPN 89

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  L+ ++    +  L+ +   GG+L   +  R   + + E+       +++ ++ + H 
Sbjct: 90  IVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHS 146

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
            GI++R+LKPEN+L+ S      + L DF L+
Sbjct: 147 NGIVHRNLKPENLLLASKAKGAAVKLADFGLA 178

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +   VD W  G+ ++ L  G  PF   D     A + A A ++
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDY 249

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           P     +V   AK LI  +L  +P +R+
Sbjct: 250 PSPEWDTVTPEAKSLIDSMLTVNPKKRI 277

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  103 bits (258), Expect = 7e-25
 Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 71/325 (21%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--I 139
           SDL     LG G  G    V  +            +VM  +EL+  ++E++    +E  +
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETG---------EVMVMKELIRFDEETQRTFLKEVKV 60

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
           +  L+HP +      L   +    +TE+  GG L  +++    D ++  S    +A ++ 
Sbjct: 61  MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKS--MDSQYPWSQRVSFAKDIA 118

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
             + +LH M II+RDL   N LVR + ++++ DF L                        
Sbjct: 119 SGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGL------------------------ 154

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                          + ++ +           K+  +KK                   + 
Sbjct: 155 ---------------ARLMVDEKTQPEGLRSLKKPDRKK-----------------RYTV 182

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVARALEF 377
           VG   ++APE+I+G  +   VD ++ GI + E+              +     V   L+ 
Sbjct: 183 VGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR 242

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRR 402
              P+ P     +  +    DP +R
Sbjct: 243 YCPPNCPPSFFPITVRCCDLDPEKR 267

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  101 bits (255), Expect = 9e-25
 Identities = 70/329 (21%), Positives = 112/329 (34%), Gaps = 83/329 (25%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-- 138
            ++L     +G G  G VY      ++   G   A K   + +      ++   + +E  
Sbjct: 6   FAELTLEEIIGIGGFGKVY------RAFWIGDEVAVKAA-RHDPDEDISQTIENVRQEAK 58

Query: 139 ILEMLDHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASE 196
           +  ML HP +  L    L  P   CL+ EF  GG L+ VL  ++      +  V + A +
Sbjct: 59  LFAMLKHPNIIALRGVCLKEPNL-CLVMEFARGGPLNRVLSGKRIP---PDILVNW-AVQ 113

Query: 197 VVVALEFLHMMG---IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSP 253
           +   + +LH      II+RDLK  N+L+           +  LK          ++D   
Sbjct: 114 IARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLS-NKILK----------ITD--- 159

Query: 254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV 313
                           FG             ++       R  K+   G           
Sbjct: 160 ----------------FG-------------LARE---WHRTTKMSAAGAY--------- 178

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
                     ++APE+I         D W+ G+ ++EL  G  PF+GID       V   
Sbjct: 179 ---------AWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMN 229

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            L  P   + P P   L+      DP  R
Sbjct: 230 KLALPIPSTCPEPFAKLMEDCWNPDPHSR 258

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  101 bits (255), Expect = 1e-24
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           +G G  G V +   K          AAK + K  +     E   R ++E  I++ LDHP 
Sbjct: 17  IGRGSWGEVKIAVQKG----TRIRRAAKKIPKYFV-----EDVDRFKQEIEIMKSLDHPN 67

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  LY T +      L+ E C GG+L   +  +   + F ES       +V+ A+ + H 
Sbjct: 68  IIRLYETFEDNTDIYLVMELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCHK 124

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           + + +RDLKPEN L  +   D  + L DF L+
Sbjct: 125 LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + VGT  Y++P+++ G  +G   D W+ G+ ++ L  G  PF        +  +      
Sbjct: 167 TKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFT 225

Query: 377 FPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           FP++   +V   A+ LI +LL K P +R+
Sbjct: 226 FPEKDWLNVSPQAESLIRRLLTKSPKQRI 254

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  102 bits (256), Expect = 3e-24
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 35/193 (18%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
            L     LG  D  +      +      G  F   V    E    N   + + E   L +
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQE----TGESFEVHVPYFTERPPSNAIKQMKEEVLRLRL 129

Query: 143 L----------------------DHPFLPTLYATLDCPRWSCLLTEF----CPGGDLHVL 176
           L                        P    +       R   +L+ F        +L   
Sbjct: 130 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTF 189

Query: 177 -----RQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD 231
                      K     A      +V+  L  LH  G+++  L+P ++++   G + LT 
Sbjct: 190 GEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTG 249

Query: 232 FDLSLKGDNSTST 244
           F+  ++      +
Sbjct: 250 FEHLVRDGARVVS 262

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 90.5 bits (224), Expect = 5e-20
 Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 26/133 (19%)

Query: 314 RSMSFVGTHEYLAPEIISGEG-----------HGNAVDWWTLGIFIFELFYGTTPFKGID 362
             +    +  +  PE+ +                 + D W LG+ I+ ++    P     
Sbjct: 258 ARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDA 317

Query: 363 HELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN 422
                  +      F    ++P P + L+   L      R    +          +  + 
Sbjct: 318 ALGGSEWI------FRSCKNIPQPVRALLEGFLRYPKEDR----LLPLQAMETPEYEQLR 367

Query: 423 WALLRCAKPPFIP 435
             L        +P
Sbjct: 368 TEL-----SAALP 375

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  101 bits (253), Expect = 4e-24
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LGSG    V+LV+ +      G  FA K + K      +      +E E  +L+ + H  
Sbjct: 17  LGSGAFSEVFLVKQRL----TGKLFALKCIKKSPAFRDS-----SLENEIAVLKKIKHEN 67

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           + TL    +      L+ +   GG+L   +L +      + E        +V+ A+++LH
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDRILER----GVYTEKDASLVIQQVLSAVKYLH 123

Query: 206 MMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNST 242
             GI++RDLKPEN+L  +   +  IM+TDF LS    N  
Sbjct: 124 ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI 163

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
            +  GT  Y+APE+++ + +  AVD W++G+  + L  G  PF           +     
Sbjct: 165 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYY 224

Query: 376 EFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           EF       +   AKD I  LL KDP  R 
Sbjct: 225 EFESPFWDDISESAKDFICHLLEKDPNERY 254

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  101 bits (253), Expect = 5e-24
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 22/162 (13%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI---L 140
           LR    L  G    VY      +   +G  +A K +         +E    I +E+    
Sbjct: 30  LRVRRVLAEGGFAFVYEA----QDVGSGREYALKRLLSN-----EEEKNRAIIQEVCFMK 80

Query: 141 EMLDHPFLPTLYATLDCPRWS--------CLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
           ++  HP +    +     +           LLTE C G  +  L++ +         V  
Sbjct: 81  KLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLK 140

Query: 193 YASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGHIMLTDF 232
              +   A++ +H     II+RDLK EN+L+ + G I L DF
Sbjct: 141 IFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDF 182

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 316 MSFVGTHEYLAPEII---SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           ++   T  Y  PEII   S    G   D W LG  ++ L +   PF   +    L  +V 
Sbjct: 208 ITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF---EDGAKLR-IVN 263

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                P   +       LI  +L  +P  R
Sbjct: 264 GKYSIPPHDTQYTVFHSLIRAMLQVNPEER 293

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  101 bits (255), Expect = 9e-24
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 16/152 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G    V            G  +AA +++ ++L +R+ +   ++ERE  I  +L HP 
Sbjct: 19  LGKGAFSVVRRCVKVL----AGQEYAAMIINTKKLSARDHQ---KLEREARICRLLKHPN 71

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
           +  L+ ++       L+ +   GG+L   +  R   + + E+       +++ A+   H 
Sbjct: 72  IVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQ 128

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           MG+++R+LKPEN+L+ S      + L DF L+
Sbjct: 129 MGVVHRNLKPENLLLASKLKGAAVKLADFGLA 160

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           F GT  YL+PE++  + +G  VD W  G+ ++ L  G  PF   D       + A A +F
Sbjct: 173 FAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDF 232

Query: 378 PKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           P     +V   AKDLI ++L  +P++R+
Sbjct: 233 PSPEWDTVTPEAKDLINKMLTINPSKRI 260

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 99.6 bits (249), Expect = 1e-23
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 10/150 (6%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V  V      S   C  A K++ K++L  R     A +++EI  L  L H  
Sbjct: 13  LGEGSYGKVKEV----LDSETLCRRAVKILKKKKL-RRIPNGEANVKKEIQLLRRLRHKN 67

Query: 148 LPTLYATLDC--PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  L   L     +   ++ E+C  G   +L    P+KRF       Y  +++  LE+LH
Sbjct: 68  VIQLVDVLYNEEKQKMYMVMEYCVCGMQEML-DSVPEKRFPVCQAHGYFCQLIDGLEYLH 126

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             GI+++D+KP N+L+ + G + ++   ++
Sbjct: 127 SQGIVHKDIKPGNLLLTTGGTLKISALGVA 156

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 320 GTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           G+  +  PEI +G     G  VD W+ G+ ++ +  G  PF+G +      N+   +   
Sbjct: 173 GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAI 232

Query: 378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN-GVNWALLRCAKPPFIPR 436
           P       P  DL+  +L  +P +R   +     I++H +F      A      PP    
Sbjct: 233 P--GDCGPPLSDLLKGMLEYEPAKRFSIR----QIRQHSWFRKKHPPAEAPVPIPPSPDT 286

Query: 437 PVTCRDLT 444
               R +T
Sbjct: 287 KDRWRSMT 294

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =   99 bits (249), Expect = 3e-23
 Identities = 57/389 (14%), Positives = 110/389 (28%), Gaps = 128/389 (32%)

Query: 82  SDLRFVHRLGSG--DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
                +  +G G  D+ +V      ++    G +   + ++   L + + E    ++ E+
Sbjct: 25  GCYELLTVIGKGFEDLMTVN----LARYKPTGEYVTVRRIN---LEACSNEMVTFLQGEL 77

Query: 140 LEM--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
                 +HP +    AT        ++T F   G    L         +E A+ +    V
Sbjct: 78  HVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGV 137

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
           + AL+++H MG ++R +K  ++L+  DG + L+    +           ++S        
Sbjct: 138 LKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSN---------LSMISHGQ----- 183

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
                                              R++     P                
Sbjct: 184 -----------------------------------RQRVVHDFPKY-------------- 194

Query: 318 FVGTHEYLAPEII--SGEGHGNAVDWWTLGIFIFELFYGTTPF----------------- 358
            V    +L+PE++  + +G+    D +++GI   EL  G  PF                 
Sbjct: 195 SVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTV 254

Query: 359 ---------------------KGIDHELTLANVVARALEFPKEPSVPGPA------KDLI 391
                                                      PS P            +
Sbjct: 255 PCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFV 314

Query: 392 AQLLVKDPTRRMGSKMGATAIK--RHQFF 418
            Q L ++P  R       +A     H FF
Sbjct: 315 EQCLQRNPDAR------PSASTLLNHSFF 337

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 98.1 bits (245), Expect = 5e-23
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFL 148
           LG G          K     +   FA K++ KR       E+  + E   L++ + HP +
Sbjct: 19  LGEGSFSICRKCVHKK----SNQAFAVKIISKR------MEANTQKEITALKLCEGHPNI 68

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
             L+        + L+ E   GG+L   + ++    K F E+   +   ++V A+  +H 
Sbjct: 69  VKLHEVFHDQLHTFLVMELLNGGELFERIKKK----KHFSETEASYIMRKLVSAVSHMHD 124

Query: 207 MGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           +G+++RDLKPEN+L      +  I + DF  +
Sbjct: 125 VGVVHRDLKPENLLFTDENDNLEIKIIDFGFA 156

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-------LA 368
            +   T  Y APE+++  G+  + D W+LG+ ++ +  G  PF+  D  LT       + 
Sbjct: 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMK 226

Query: 369 NVVARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
            +      F  E   +V   AKDLI  LL  DP +R+
Sbjct: 227 KIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRL 263

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 98.6 bits (246), Expect = 5e-23
 Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 19/206 (9%)

Query: 36  NPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDL-RFVHRLGSGD 94
           + SS      +  +     +          +       + +N   LSD       LG G 
Sbjct: 6   HHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSDFFEVESELGRGA 65

Query: 95  IGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT 154
              VY  + K         +A KV+ K        +   R E  +L  L HP +  L   
Sbjct: 66  TSIVYRCKQKG----TQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEI 116

Query: 155 LDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYR 212
            + P    L+ E   GG+L   ++ +      + E        +++ A+ +LH  GI++R
Sbjct: 117 FETPTEISLVLELVTGGELFDRIVEK----GYYSERDAADAVKQILEAVAYLHENGIVHR 172

Query: 213 DLKPENVLVRS---DGHIMLTDFDLS 235
           DLKPEN+L  +   D  + + DF LS
Sbjct: 173 DLKPENLLYATPAPDAPLKIADFGLS 198

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-L 375
           +  GT  Y APEI+ G  +G  VD W++GI  + L  G  PF     +  +   +     
Sbjct: 209 TVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEY 268

Query: 376 EFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
            F       V   AKDL+ +L+V DP +R+
Sbjct: 269 YFISPWWDEVSLNAKDLVRKLIVLDPKKRL 298

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 96.9 bits (241), Expect = 4e-22
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 54/295 (18%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREILEML-- 143
           + +LG G   +V+L            F A KV     + S    +  A  E  +L+ +  
Sbjct: 42  IRKLGWGHFSTVWLS----WDIQGKKFVAMKV-----VKSAEHYTETALDEIRLLKSVRN 92

Query: 144 ---DHP---FLPTLYATLDC-----PRWS--CLLTEFCPGGDLHVLRQRQPDKRFHESAV 190
              + P    +  L   LD         +  C++ E   G  L     +   +      V
Sbjct: 93  SDPNDPNREMVVQL---LDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCV 148

Query: 191 RFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS 249
           +    +V+  L++LH    II+ D+KPEN+L+  +              +         +
Sbjct: 149 KKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVN--------------EQYIRRLAAEA 194

Query: 250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE 309
            +   +G   P+  AV   P    + ++             + +  +KL         A 
Sbjct: 195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPL----------EPKNAEKLKVKIADLGNAC 244

Query: 310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE 364
            +       + T +Y + E++ G G+    D W+     FEL  G   F+    E
Sbjct: 245 WVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGE 299

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 95.1 bits (237), Expect = 9e-22
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 20/154 (12%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           LG G  G V     +      G   A K++       +        E +        P +
Sbjct: 37  LGLGVNGKVLECFHRR----TGQKCALKLLYDSPKARQ--------EVDHHWQASGGPHI 84

Query: 149 PTLYAT----LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
             +           R   ++ E   GG+L    Q + D+ F E        ++  A++FL
Sbjct: 85  VCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFL 144

Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS 235
           H   I +RD+KPEN+L  S   D  + LTDF  +
Sbjct: 145 HSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-- 373
            +   T  Y+APE++  E +  + D W+LG+ ++ L  G  PF     +     +  R  
Sbjct: 187 QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR 246

Query: 374 --ALEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
                FP      V   AK LI  LL  DPT R+
Sbjct: 247 LGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERL 280

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 95.6 bits (238), Expect = 1e-21
 Identities = 47/233 (20%), Positives = 80/233 (34%), Gaps = 29/233 (12%)

Query: 30  WTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHR 89
             + G +P    P+ A     P      P  +       +    +  + L +     +  
Sbjct: 3   SNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDD 62

Query: 90  -------LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
                  LG G  G V  +  K         FA K++       R        E E+   
Sbjct: 63  YKVTSQVLGLGINGKVLQIFNKR----TQEKFALKMLQDCPKARR--------EVELHWR 110

Query: 143 L-DHPFLPTLYAT----LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
               P +  +           +   ++ E   GG+L    Q + D+ F E         +
Sbjct: 111 ASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 170

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLS--LKGDNSTSTA 245
             A+++LH + I +RD+KPEN+L  S   +  + LTDF  +      NS +T 
Sbjct: 171 GEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTP 223

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT----LANVV 371
            +   T  Y+APE++  E +  + D W+LG+ ++ L  G  PF               + 
Sbjct: 221 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR 280

Query: 372 ARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
               EFP      V    K LI  LL  +PT+RM
Sbjct: 281 MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM 314

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 94.0 bits (234), Expect = 1e-21
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LE 141
           L+F   +G G   +VY    K   +      A   +  R+L    K  R R + E   L+
Sbjct: 28  LKFDIEIGRGSFKTVY----KGLDTETTVEVAWCELQDRKL---TKSERQRFKEEAEMLK 80

Query: 142 MLDHP----FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
            L HP    F  +  +T+   +   L+TE    G L    +R   K      +R +  ++
Sbjct: 81  GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQI 138

Query: 198 VVALEFLHMMG--IIYRDLKPENVLV-RSDGHIMLTDFDLSLKGDNSTS 243
           +  L+FLH     II+RDLK +N+ +    G + + D  L+     S +
Sbjct: 139 LKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA 187

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + +GT E++APE+   E +  +VD +  G+ + E+     P+    +   +   V   ++
Sbjct: 189 AVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK 247

Query: 377 FPKEPSVPGP-AKDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
                 V  P  K++I   + ++   R       +      H FF
Sbjct: 248 PASFDKVAIPEVKEIIEGCIRQNKDER------YSIKDLLNHAFF 286

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 93.5 bits (233), Expect = 1e-21
 Identities = 59/329 (17%), Positives = 105/329 (31%), Gaps = 87/329 (26%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             +    R+GSG  G+VY  +            A K+++      +  ++    E  +L 
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKWHGD-------VAVKMLNVTAPTPQQLQAFKN-EVGVLR 75

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
              H  +         P+   ++T++C G  L H L     + +F    +   A +    
Sbjct: 76  KTRHVNILLFMGYSTAPQL-AIVTQWCEGSSLYHHLHAS--ETKFEMKKLIDIARQTARG 132

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQP 260
           +++LH   II+RDLK  N+             D ++K          + D          
Sbjct: 133 MDYLHAKSIIHRDLKSNNI---------FLHEDNTVK----------IGD---------- 163

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
                    FG +                     K +                      G
Sbjct: 164 ---------FGLA-------------------TEKSRWSGSHQ-----------FEQLSG 184

Query: 321 THEYLAPEIISGEGHG---NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF 377
           +  ++APE+I  +         D +  GI ++EL  G  P+  I++   +  +V R    
Sbjct: 185 SILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLS 244

Query: 378 PKEPSVPG----PAKDLIAQLLVKDPTRR 402
           P    V        K L+A+ L K    R
Sbjct: 245 PDLSKVRSNCPKRMKRLMAECLKKKRDER 273

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 15/150 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +G G+   V L    ++    G   A K++DK +L   N  S  ++ RE+  +++L+HP 
Sbjct: 23  IGKGNFAKVKL----ARHILTGREVAIKIIDKTQL---NPTSLQKLFREVRIMKILNHPN 75

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  L+  ++  +   L+ E+  GG++  +++       R  E   R    ++V A+++ H
Sbjct: 76  IVKLFEVIETEKTLYLIMEYASGGEVFDYLVAH----GRMKEKEARSKFRQIVSAVQYCH 131

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              I++RDLK EN+L+ +D +I + DF  S
Sbjct: 132 QKRIVHRDLKAENLLLDADMNIKIADFGFS 161

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F G   Y APE+  G+   G  VD W+LG+ ++ L  G+ PF G + +     V+     
Sbjct: 173 FCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYR 232

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
            P    +    ++L+ + LV +P +R   +     I + ++ N
Sbjct: 233 IP--FYMSTDCENLLKRFLVLNPIKRGTLEQ----IMKDRWIN 269

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 13/169 (7%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
              L F+ +L     G ++      K    G     KV+  R+  +R        E   L
Sbjct: 9   FKQLNFLTKLNENHSGELW------KGRWQGNDIVVKVLKVRDWSTRKSRDFNE-ECPRL 61

Query: 141 EMLDHPFLPTLY-ATLDCPRWS-CLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEV 197
            +  HP +  +  A    P     L+T + P G L +VL +          AV+F A ++
Sbjct: 62  RIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKF-ALDM 120

Query: 198 VVALEFLHMMG--IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
              + FLH +   I    L   +V++  D    ++  D+     +    
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRM 169

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 315 SMSFVGTHEYLAPEIISGEGHGN---AVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           S   +    ++APE +  +       + D W+  + ++EL     PF  + +      V 
Sbjct: 165 SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVA 224

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
              L     P +      L+   + +DP +R
Sbjct: 225 LEGLRPTIPPGISPHVSKLMKICMNEDPAKR 255

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 94.1 bits (234), Expect = 2e-21
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 33/185 (17%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
              +     +G G  G V+  + +      G   A K+   RE      E     E EI 
Sbjct: 41  ARTIVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSRE------ERSWFREAEIY 88

Query: 140 -LEMLDHPFLPTLYA-----TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRF 192
              ML H  +    A          +   L++++   G L   L +        E  ++ 
Sbjct: 89  QTVMLRHENILGFIAADNKDNGTWTQL-WLVSDYHEHGSLFDYLNRYTVT---VEGMIKL 144

Query: 193 YASEVVVALEFLHM--------MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            A      L  LHM          I +RDLK +N+LV+ +G   + D  L+++ D++T T
Sbjct: 145 -ALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT 203

Query: 245 AQLVS 249
             +  
Sbjct: 204 IDIAP 208

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES 131
           +   +   T  DL+ +  +G G  GSV  +  K     +G   A K +      + +++ 
Sbjct: 12  SPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKP----SGQIMAVKRIR----STVDEKE 63

Query: 132 RARIEREI---LEMLDHPFLPTLYATL----DCPRWSCLLTEFCPGGDLHVLRQ--RQPD 182
           + ++  ++   +   D P++   Y  L    DC  W C+  E          +      D
Sbjct: 64  QKQLLMDLDVVMRSSDCPYIVQFYGALFREGDC--WICM--ELMSTSFDKFYKYVYSVLD 119

Query: 183 KRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDF 232
               E  +       V AL  L   + II+RD+KP N+L+   G+I L DF
Sbjct: 120 DVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDF 170

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 313 VRSMS---FVGTHEYLAPEIISGEGHGNA----VDWWTLGIFIFELFYGTTPFKGIDHEL 365
           V S++     G   Y+APE I             D W+LGI ++EL  G  P+   +   
Sbjct: 177 VDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF 236

Query: 366 TLANVVARA----LEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                V +     L   +E        + +   L KD ++R
Sbjct: 237 DQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKR 277

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFL 148
           +G G          K+        FA K++DK +            E EIL     HP +
Sbjct: 30  IGVGSYSVCKRCIHKA----TNMEFAVKIIDKSKR-------DPTEEIEILLRYGQHPNI 78

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLHM 206
            TL    D  ++  ++TE   GG+L   +LRQ    K F E         +   +E+LH 
Sbjct: 79  ITLKDVYDDGKYVYVVTELMKGGELLDKILRQ----KFFSEREASAVLFTITKTVEYLHA 134

Query: 207 MGIIYRDLKPENVLVRSDGH----IMLTDFDLS--LKGDNST 242
            G+++RDLKP N+L   +      I + DF  +  L+ +N  
Sbjct: 135 QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG----IDHELTLANVV 371
           M+   T  ++APE++  +G+  A D W+LG+ ++ +  G TPF         E+ LA + 
Sbjct: 178 MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEI-LARIG 236

Query: 372 ARALEFPKEP--SVPGPAKDLIAQLLVKDPTRRM 403
           +           SV   AKDL++++L  DP +R+
Sbjct: 237 SGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRL 270

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 92.4 bits (230), Expect = 4e-21
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 22/168 (13%)

Query: 73  NNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESR 132
                   ++DL  +  +GSG  G V+ ++ +      G   A K M      S NKE  
Sbjct: 16  GGQRYQAEINDLENLGEMGSGTCGQVWKMRFRK----TGHVIAVKQMR----RSGNKEEN 67

Query: 133 ARIEREI---LEMLDHPFLPTLYATL----DCPRWSCLLTEFCPGGDLHVLRQRQPDKRF 185
            RI  ++   L+  D P++   + T     D   +  +  E        + ++ Q     
Sbjct: 68  KRILMDLDVVLKSHDCPYIVQCFGTFITNTDV--FIAM--ELMGTCAEKLKKRMQ--GPI 121

Query: 186 HESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDF 232
            E  +      +V AL +L    G+I+RD+KP N+L+   G I L DF
Sbjct: 122 PERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDF 169

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 313 VRSMS---FVGTHEYLAPEII-----SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE 364
           V   +     G   Y+APE I     +   +    D W+LGI + EL  G  P+K    +
Sbjct: 176 VDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD 235

Query: 365 LTLANVVAR--ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             +   V +      P      G  +  +   L KD  +R
Sbjct: 236 FEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKR 275

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 91.2 bits (227), Expect = 7e-21
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 21/178 (11%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE--RE 138
            +++ +  ++G G  G V+  +L      +    A K +   +     +      E  RE
Sbjct: 18  DNEIEYEKQIGKGGFGLVHKGRLVK----DKSVVAIKSLILGDSEGETEMIEKFQEFQRE 73

Query: 139 --ILEMLDHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
             I+  L+HP +  LY    + P    ++ EF P GDL+     +         +R    
Sbjct: 74  VFIMSNLNHPNIVKLYGLMHNPP---RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRL-ML 129

Query: 196 EVVVALEFLHMMG--IIYRDLKPENVLVRSDG-----HIMLTDFDLS-LKGDNSTSTA 245
           ++ + +E++      I++RDL+  N+ ++S          + DF LS     + +   
Sbjct: 130 DIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLL 187

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 315 SMSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVV 371
               +G  +++APE I  E   +    D ++  + ++ +  G  PF    + ++   N++
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMI 242

Query: 372 ARA---LEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                    P+    P   +++I      DP +R
Sbjct: 243 REEGLRPTIPE--DCPPRLRNVIELCWSGDPKKR 274

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 91.2 bits (227), Expect = 9e-21
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 76  NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI 135
           +  +   DL  +  LG G  G V  ++       +G   A K +      + N + + R+
Sbjct: 1   SMEVKADDLEPIMELGRGAYGVVEKMRHVP----SGQIMAVKRIR----ATVNSQEQKRL 52

Query: 136 EREI---LEMLDHPFLPTLYATL----DCPRWSCLLTEFCPGGDLHVLRQ-RQPDKRFHE 187
             ++   +  +D PF  T Y  L    D   W C+  E          +Q     +   E
Sbjct: 53  LMDLDISMRTVDCPFTVTFYGALFREGDV--WICM--ELMDTSLDKFYKQVIDKGQTIPE 108

Query: 188 SAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDF 232
             +   A  +V ALE LH  + +I+RD+KP NVL+ + G + + DF
Sbjct: 109 DILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDF 154

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 313 VRSM---SFVGTHEYLAPEIISGEGHGNA----VDWWTLGIFIFELFYGTTPFKGIDHEL 365
           V  +      G   Y+APE I+ E +        D W+LGI + EL     P+       
Sbjct: 161 VDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF 220

Query: 366 TLANVVARALEFPKEPS--VPGPAKDLIAQLLVKDPTRR 402
                V      P+ P+        D  +Q L K+   R
Sbjct: 221 QQLKQVVEE-PSPQLPADKFSAEFVDFTSQCLKKNSKER 258

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 92.2 bits (229), Expect = 1e-20
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 17/186 (9%)

Query: 61  KAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD 120
           +  K   +          L   D   +  LG+G+ G V+ V  K     +G   A K++ 
Sbjct: 12  QQRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIH 67

Query: 121 KRELVSRNKESRARIERE--ILEMLDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVL 176
               +      R +I RE  +L   + P++   Y     D     C+  E   GG L  +
Sbjct: 68  ----LEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM--EHMDGGSLDQV 121

Query: 177 RQRQPDKRFHESAVRFYASEVVVALEFLHMMG-IIYRDLKPENVLVRSDGHIMLTDFDLS 235
            ++    R  E  +   +  V+  L +L     I++RD+KP N+LV S G I L DF +S
Sbjct: 122 LKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS 179

Query: 236 LKGDNS 241
            +  +S
Sbjct: 180 GQLIDS 185

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 313 VRSM--SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
           + SM  SFVGT  Y++PE + G  +    D W++G+ + E+  G  P    D +      
Sbjct: 183 IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMF 242

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMG 404
             +      E                 D    M 
Sbjct: 243 GCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMA 276

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 81/416 (19%), Positives = 142/416 (34%), Gaps = 135/416 (32%)

Query: 35  SNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGD 94
            + S         +        +    A++    +G+      P  L  L    ++G G 
Sbjct: 6   HHSSGVDLGTENLYFQSGVVTHEQFKAALRMVVDQGD------PRLL--LDSYVKIGEGS 57

Query: 95  IGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--LDHPFLPTLY 152
            G V      ++  ++G   A K+MD R+     ++ R  +  E++ M    H  +  +Y
Sbjct: 58  TGIVC----LAREKHSGRQVAVKMMDLRK-----QQRRELLFNEVVIMRDYQHFNVVEMY 108

Query: 153 AT--LDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            +  +    W  +L EF  GG L  ++ Q     R +E  +      V+ AL +LH  G+
Sbjct: 109 KSYLVGEELW--VLMEFLQGGALTDIVSQ----VRLNEEQIATVCEAVLQALAYLHAQGV 162

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPP 269
           I+RD+K +++L+  DG + L+DF            AQ+  D                   
Sbjct: 163 IHRDIKSDSILLTLDGRVKLSDFGFC---------AQISKDVP----------------- 196

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG--TPEIVAEPLDVRSMSFVGTHEYLAP 327
                                  +RK  +G P    PE+++                   
Sbjct: 197 -----------------------KRKSLVGTPYWMAPEVISR------------------ 215

Query: 328 EIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-PKE--PSVP 384
                  +   VD W+LGI + E+  G  P+      +       +A++       P + 
Sbjct: 216 -----SLYATEVDIWSLGIMVIEMVDGEPPYFSD-SPV-------QAMKRLRDSPPPKLK 262

Query: 385 GPAK------DLIAQLLVKDPTRRMGSKMGATAIK--RHQFFNGVNWALLRCAKPP 432
              K      D + ++LV+DP  R      ATA +   H F        L     P
Sbjct: 263 NSHKVSPVLRDFLERMLVRDPQER------ATAQELLDHPF--------LLQTGLP 304

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREI--LEMLD 144
           LGSG  G V+     +           K + K +++           ++  EI  L  ++
Sbjct: 32  LGSGAFGFVWT----AVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVE 87

Query: 145 HPFLPTLYATLDCPRWSCLLTEF-CPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVAL 201
           H  +  +    +   +  L+ E    G DL   + R      R  E    +   ++V A+
Sbjct: 88  HANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH----PRLDEPLASYIFRQLVSAV 143

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +L +  II+RD+K EN+++  D  I L DF  +
Sbjct: 144 GYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 69.4 bits (170), Expect = 4e-13
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F GT EY APE++ G    G  ++ W+LG+ ++ L +   PF  ++        V  A+ 
Sbjct: 189 FCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE------ETVEAAIH 242

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
            P   S       L++ LL   P RR   +     +    +  
Sbjct: 243 PPYLVS--KELMSLVSGLLQPVPERRTTLEK----LVTDPWVT 279

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 33/185 (17%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
              ++ V ++G G  G V++ + +      G   A KV    E  S  +E       EI 
Sbjct: 36  AKQIQMVKQIGKGRYGEVWMGKWR------GEKVAVKVFFTTEEASWFRE------TEIY 83

Query: 140 -LEMLDHPFLPTLYA-----TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRF 192
              ++ H  +    A     T    +   L+T++   G L+  L+    D    +S ++ 
Sbjct: 84  QTVLMRHENILGFIAADIKGTGSWTQL-YLITDYHENGSLYDYLKSTTLD---AKSMLKL 139

Query: 193 YASEVVVALEFLHM--------MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            A   V  L  LH           I +RDLK +N+LV+ +G   + D  L++K  + T+ 
Sbjct: 140 -AYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNE 198

Query: 245 AQLVS 249
             +  
Sbjct: 199 VDIPP 203

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 20/153 (13%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFL 148
           LG G  G V  +  K         FA K++       R        E E+       P +
Sbjct: 26  LGLGINGKVLQIFNKR----TQEKFALKMLQDCPKARR--------EVELHWRASQCPHI 73

Query: 149 PTLYA----TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
             +           +   ++ E   GG+L    Q + D+ F E         +  A+++L
Sbjct: 74  VRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL 133

Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDL 234
           H + I +RD+KPEN+L  S   +  + LTDF  
Sbjct: 134 HSINIAHRDVKPENLLYTSKRPNAILKLTDFGF 166

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 325 LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT----LANVVARALEFPKE 380
            A E   GE +  + D W+LG+ ++ L  G  PF               +     EFP  
Sbjct: 166 FAKETT-GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNP 224

Query: 381 P--SVPGPAKDLIAQLLVKDPTRRM 403
               V    K LI  LL  +PT+RM
Sbjct: 225 EWSEVSEEVKMLIRNLLKTEPTQRM 249

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 20/152 (13%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           +GSG+ G   L+    +        A K +++   +  N      ++REI     L HP 
Sbjct: 28  IGSGNFGVARLM----RDKLTKELVAVKYIERGAAIDEN------VQREIINHRSLRHPN 77

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +      +  P    ++ E+  GG+L   +        RF E   RF+  +++  + + H
Sbjct: 78  IVRFKEVILTPTHLAIIMEYASGGELYERICNA----GRFSEDEARFFFQQLLSGVSYCH 133

Query: 206 MMGIIYRDLKPENVLV--RSDGHIMLTDFDLS 235
            M I +RDLK EN L+       + + DF  S
Sbjct: 134 SMQICHRDLKLENTLLDGSPAPRLKICDFGYS 165

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 317 SFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
           S VGT  Y+APE++  +   G   D W+ G+ ++ +  G  PF+  +        + R L
Sbjct: 176 STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRIL 235

Query: 376 ----EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
                 P +  +      LI+++ V DP  R+        IK H +F 
Sbjct: 236 SVKYSIPDDIRISPECCHLISRIFVADPATRISIP----EIKTHSWFL 279

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 91.8 bits (228), Expect = 4e-20
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHPF 147
           LG G  G V +     K    G   A K+++++++ S +   +  I REI  L++  HP 
Sbjct: 24  LGVGTFGKVKV----GKHELTGHKVAVKILNRQKIRSLDVVGK--IRREIQNLKLFRHPH 77

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVVVALEFLH 205
           +  LY  +  P    ++ E+  GG+L  ++ +      R  E   R    +++  +++ H
Sbjct: 78  IIKLYQVISTPSDIFMVMEYVSGGELFDYICKN----GRLDEKESRRLFQQILSGVDYCH 133

Query: 206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              +++RDLKPENVL+ +  +  + DF LS
Sbjct: 134 RHMVVHRDLKPENVLLDAHMNAKIADFGLS 163

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)

Query: 318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
             G+  Y APE+ISG    G  VD W+ G+ ++ L  GT PF   DH  TL   +     
Sbjct: 175 SCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDD-DHVPTLFKKICDG-I 232

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR 436
           F     +      L+  +L  DP +R   K     I+ H++F               +P+
Sbjct: 233 FYTPQYLNPSVISLLKHMLQVDPMKRATIK----DIREHEWFK------------QDLPK 276

Query: 437 PVTCRDLTTTNSSIDNSI 454
            +   D + +++ ID+  
Sbjct: 277 YLFPEDPSYSSTMIDDEA 294

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 33/183 (18%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--L 140
           D+  +  +G G  G V+           G   A K+   R+  S         E E+   
Sbjct: 9   DITLLECVGKGRYGEVWRGSW------QGENVAVKIFSSRDEKS------WFRETELYNT 56

Query: 141 EMLDHPFLPTLYA-----TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYA 194
            ML H  +    A          +   L+T +   G L+  L+    D     S +R   
Sbjct: 57  VMLRHENILGFIASDMTSRHSSTQL-WLITHYHEMGSLYDYLQLTTLD---TVSCLRI-V 111

Query: 195 SEVVVALEFLHM--------MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
             +   L  LH+          I +RDLK +N+LV+ +G   + D  L++    ST+   
Sbjct: 112 LSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLD 171

Query: 247 LVS 249
           + +
Sbjct: 172 VGN 174

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 7/206 (3%)

Query: 53  RCNDDPCWKAIKEATSEGNNNNNNNPL----TLSDLRFVHRLGSGDIGSVYLVQLKSKSS 108
           +   D C  AIK              +     L+ L   H        +      +    
Sbjct: 26  KNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE--HPGIVRYFNAWLETPPEKWQE 83

Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFC 168
                +         L S +      ++   ++                  +  +  + C
Sbjct: 84  EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLC 143

Query: 169 PGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHI 227
              +L   + +R   +            ++  A+EFLH  G+++RDLKP N+    D  +
Sbjct: 144 RKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVV 203

Query: 228 MLTDFDLSLKGDNSTSTAQLVSDQSP 253
            + DF L    D       +++    
Sbjct: 204 KVGDFGLVTAMDQDEEEQTVLTPMPA 229

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
             VGT  Y++PE I G  + + VD ++LG+ +FEL Y  +       E        R L+
Sbjct: 235 GQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ----MERVRIITDVRNLK 290

Query: 377 FPKEPSVPGP-AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           FP   +   P    ++  +L   PT R      AT I  +  F
Sbjct: 291 FPLLFTQKYPQEHMMVQDMLSPSPTER----PEATDIIENAIF 329

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 79/376 (21%), Positives = 127/376 (33%), Gaps = 127/376 (33%)

Query: 74  NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA 133
           +  +P          ++G G  G+VY     +     G   A + M+ ++     +  + 
Sbjct: 14  SVGDPKKK--YTRFEKIGQGASGTVY----TAMDVATGQEVAIRQMNLQQ-----QPKKE 62

Query: 134 RIEREILEM--LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA 189
            I  EIL M    +P +     +  +    W  ++ E+  GG L  +          E  
Sbjct: 63  LIINEILVMRENKNPNIVNYLDSYLVGDELW--VVMEYLAGGSLTDVVTETC---MDEGQ 117

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVS 249
           +     E + ALEFLH   +I+RD+K +N+L+  DG + LTDF            AQ+  
Sbjct: 118 IAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC---------AQITP 168

Query: 250 DQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG--TPEIV 307
           +QS                                        +R   +G P    PE+V
Sbjct: 169 EQS----------------------------------------KRSTMVGTPYWMAPEVV 188

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL 367
                                    + +G  VD W+LGI   E+  G  P+    + L  
Sbjct: 189 TR-----------------------KAYGPKVDIWSLGIMAIEMIEGEPPYLNE-NPL-- 222

Query: 368 ANVVARALEF-PKE--PSVPGPAK------DLIAQLLVKDPTRRMGSKMGATAIK--RHQ 416
                RAL        P +  P K      D + + L  D  +R       +A +  +HQ
Sbjct: 223 -----RALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKR------GSAKELLQHQ 271

Query: 417 FFNGVNWALLRCAKPP 432
           F        L+ AKP 
Sbjct: 272 F--------LKIAKPL 279

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 62  AIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDK 121
           +++++    +   + +P  + ++  V  LG G  G VY    K+K+   G   AAKV++ 
Sbjct: 1   SMRKSREYEHVRRDLDPNEVWEI--VGELGDGAFGKVY----KAKNKETGALAAAKVIET 54

Query: 122 RELVSRNKESRARIEREILEM--LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDLHVLR 177
           +      +E       EI  +   DHP++  L      D   W  ++ EFCPGG +  + 
Sbjct: 55  KS-----EEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLW--IMIEFCPGGAVDAIM 107

Query: 178 QRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
                +   E  ++    +++ AL FLH   II+RDLK  NVL+  +G I L DF
Sbjct: 108 LELD-RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADF 161

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 32/119 (26%)

Query: 317 SFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           SF+GT  ++APE++  E      +    D W+LGI + E+     P   + + +      
Sbjct: 176 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-NPM------ 228

Query: 372 ARALEF--PKE--PSVPGPA------KDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
            R L     K   P++  P+      +D +   L K+P  R       +A +   H F 
Sbjct: 229 -RVL-LKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETR------PSAAQLLEHPFV 279

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL---EML 143
           V  +G+G  G VY    K +    G   A KVMD         +    I++EI    +  
Sbjct: 29  VELVGNGTYGQVY----KGRHVKTGQLAAIKVMDVTG------DEEEEIKQEINMLKKYS 78

Query: 144 DHPFLPTLY--------ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
            H  + T Y          +D   W  L+ EFC  G +  L +        E  + +   
Sbjct: 79  HHRNIATYYGAFIKKNPPGMDDQLW--LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICR 136

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E++  L  LH   +I+RD+K +NVL+  +  + L DF +S
Sbjct: 137 EILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 176

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 29/117 (24%)

Query: 317 SFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           +F+GT  ++APE+I+ +      +    D W+LGI   E+  G  P   + H +      
Sbjct: 188 TFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM-HPM------ 240

Query: 372 ARALEF--PKEPSVPG--------PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            RAL F  P+ P+ P           +  I   LVK+ ++R         + +H F 
Sbjct: 241 -RAL-FLIPRNPA-PRLKSKKWSKKFQSFIESCLVKNHSQR----PATEQLMKHPFI 290

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
              L     +G G  G VY  +   +        A +++D         ++  R E    
Sbjct: 32  FEQLEIGELIGKGRFGQVYHGRWHGE-------VAIRLIDIERDNEDQLKAFKR-EVMAY 83

Query: 141 EMLDHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
               H  +     A +  P    ++T  C G  L+ V+R          +  R  A E+V
Sbjct: 84  RQTRHENVVLFMGACMSPPHL-AIITSLCKGRTLYSVVRDA--KIVLDVNKTRQIAQEIV 140

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +LH  GI+++DLK +NV    +G +++TDF L 
Sbjct: 141 KGMGYLHAKGILHKDLKSKNVFY-DNGKVVITDFGLF 176

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 9/96 (9%)

Query: 316 MSFVGTHEYLAPEIISGEGHGN---------AVDWWTLGIFIFELFYGTTPFKGIDHELT 366
               G   +LAPEII                  D + LG   +EL     PFK    E  
Sbjct: 192 RIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI 251

Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           +  +         +  +     D++      +   R
Sbjct: 252 IWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEER 287

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 65  EATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL 124
           ++   G  N   +P  L     + ++G G  G V+    K   +      A K++D    
Sbjct: 7   QSGLPGMQNLKADPEELFTK--LEKIGKGSFGEVF----KGIDNRTQKVVAIKIID---- 56

Query: 125 VSRNKESRARIEREILEM--LDHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQ 180
           +   ++    I++EI  +   D P++   Y +   D   W  ++ E+  GG    L +  
Sbjct: 57  LEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLW--IIMEYLGGGSALDLLEPG 114

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           P     E+ +     E++  L++LH    I+RD+K  NVL+   G + L DF
Sbjct: 115 P---LDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADF 163

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 23/111 (20%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           +FVGT  ++APE+I    + +  D W+LGI   EL  G  P   + H +       + L 
Sbjct: 178 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL-HPM-------KVLF 229

Query: 377 F-PKE--PSVPG----PAKDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
             PK   P++ G    P K+ +   L K+P+ R       TA +  +H+F 
Sbjct: 230 LIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFR------PTAKELLKHKFI 274

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 16/163 (9%)

Query: 74  NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA 133
             ++P  L     +  +G G  G+VY     ++   N    A K M       ++ E   
Sbjct: 48  FKDDPEKLFSD--LREIGHGSFGAVY----FARDVRNSEVVAIKKMSYSG--KQSNEKWQ 99

Query: 134 RIEREILEM--LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESA 189
            I +E+  +  L HP           +   W  L+ E+C G    +L   +  K   E  
Sbjct: 100 DIIKEVRFLQKLRHPNTIQYRGCYLREHTAW--LVMEYCLGSASDLLEVHK--KPLQEVE 155

Query: 190 VRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           +       +  L +LH   +I+RD+K  N+L+   G + L DF
Sbjct: 156 IAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDF 198

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 29/116 (25%)

Query: 317 SFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           SFVGT  ++APE+I       +   VD W+LGI   EL     P   + + +        
Sbjct: 209 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-NAM-------S 260

Query: 374 ALEF--PKE--PSVPGPA-----KDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
           AL +   +   P++         ++ +   L K P  R       T+    +H+F 
Sbjct: 261 AL-YHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDR------PTSEVLLKHRFV 309

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 81.0 bits (200), Expect = 4e-17
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 31/189 (16%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI- 139
           L +L+ +  +G G  G+VY   L      +    A KV         N+++    E+ I 
Sbjct: 12  LDNLKLLELIGRGRYGAVYKGSL------DERPVAVKVFS-----FANRQNFIN-EKNIY 59

Query: 140 -LEMLDHPFLPTLYA-----TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
            + +++H  +          T D      L+ E+ P G L              S+ R  
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSD--WVSSCRL- 116

Query: 194 ASEVVVALEFLHMM---------GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           A  V   L +LH            I +RDL   NVLV++DG  +++DF LS++   +   
Sbjct: 117 AHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLV 176

Query: 245 AQLVSDQSP 253
                D + 
Sbjct: 177 RPGEEDNAA 185

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)

Query: 71  NNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKE 130
            ++    P  +     + +LG G  GSVY    K+     G   A K +    + S  +E
Sbjct: 20  EDSLTKQPEEV--FDVLEKLGEGSYGSVY----KAIHKETGQIVAIKQVP---VESDLQE 70

Query: 131 SRARIEREILEM--LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFH 186
               I +EI  M   D P +   Y +   +   W  ++ E+C  G +  + + +  K   
Sbjct: 71  ----IIKEISIMQQCDSPHVVKYYGSYFKNTDLW--IVMEYCGAGSVSDIIRLRN-KTLT 123

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
           E  +       +  LE+LH M  I+RD+K  N+L+ ++GH  L DF
Sbjct: 124 EDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADF 169

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 25/113 (22%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + +GT  ++APE+I   G+    D W+LGI   E+  G  P+  I H +       RA+ 
Sbjct: 184 TVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI-HPM-------RAIF 235

Query: 377 F-PKE--PSVPGPA------KDLIAQLLVKDPTRRMGSKMGATAIK--RHQFF 418
             P    P+   P        D + Q LVK P +R      ATA +  +H F 
Sbjct: 236 MIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQR------ATATQLLQHPFV 282

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 17/202 (8%)

Query: 43  SAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQ 102
           S    HH+              +  +             S  +    LGSG  GSVY   
Sbjct: 4   SHHHHHHSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYS-- 61

Query: 103 LKSKSSNNGCFFAAKVMDKRELVSRNKESR-ARIEREI--LEMLDHPFLP---TLYATLD 156
                 ++    A K ++K  +    +     R+  E+  L+ +   F      L    +
Sbjct: 62  --GIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGF-SGVIRLLDWFE 118

Query: 157 CPRWSCLLTEFC-PGGDL-HVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDL 214
            P    L+ E   P  DL   + +R       E   R +  +V+ A+   H  G+++RD+
Sbjct: 119 RPDSFVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNCGVLHRDI 175

Query: 215 KPENVLV-RSDGHIMLTDFDLS 235
           K EN+L+  + G + L DF   
Sbjct: 176 KDENILIDLNRGELKLIDFGSG 197

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F GT  Y  PE I     HG +   W+LGI ++++  G  PF+  +       ++   + 
Sbjct: 208 FDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVF 261

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT--AIKRHQFFNGVN 422
           F +  S     + LI   L   P+ R       T   I+ H +   V 
Sbjct: 262 FRQRVSS--ECQHLIRWCLALRPSDR------PTFEEIQNHPWMQDVL 301

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM------DKRELVSRNKESRARI 135
             L+F+ +LG G+ GSV + +      N G   A K +        R+            
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER--------- 91

Query: 136 EREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRF 192
           E EIL+ L H  +            R   L+ E+ P G L   L++ +   R     +  
Sbjct: 92  EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQ 149

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           Y S++   +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 150 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 192

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-------MDKRELVSRNKESRAR 134
             L+ +  LG G  G V L +   +  N G   A K            +L          
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKK-------- 72

Query: 135 IEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVR 191
            E EIL  L H  +       T D      L+ EF P G L   L + +   + +     
Sbjct: 73  -EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKN--KINLKQQL 129

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            YA ++   +++L     ++RDL   NVLV S+  + + DF L+
Sbjct: 130 KYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK-ESRARIEREILEM------ 142
           LG G  G+V+          +    A KV+ +  ++  +          E+  +      
Sbjct: 39  LGKGGFGTVFA----GHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAG 94

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEF-CPGGDL-HVLRQRQPDKRFHESAVRFYASEVVVA 200
             HP +  L    +      L+ E   P  DL   + ++       E   R +  +VV A
Sbjct: 95  GGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAA 151

Query: 201 LEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLS 235
           ++  H  G+++RD+K EN+L+    G   L DF   
Sbjct: 152 IQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSG 187

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 29/120 (24%), Positives = 41/120 (34%), Gaps = 14/120 (11%)

Query: 318 FVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F GT  Y  PE IS    H      W+LGI ++++  G  PF+          ++   L 
Sbjct: 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELH 251

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN-GVNWALLRCAKPPFIP 435
           FP    V      LI + L   P+ R         I    +         L  +K    P
Sbjct: 252 FP--AHVSPDCCALIRRCLAPKPSSR----PSLEEILLDPWMQTPAEDVPLNPSKGGPAP 305

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 33/181 (18%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-- 139
             L+ +     G  G V+      K+     + A K+   ++     K+S    E E+  
Sbjct: 24  MPLQLLEVKARGRFGCVW------KAQLLNEYVAVKIFPIQD-----KQSWQN-EYEVYS 71

Query: 140 LEMLDHPFLPTLYATLDCPRWS----CLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYA 194
           L  + H  +                  L+T F   G L   L+                A
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVS---WNELCHI-A 127

Query: 195 SEVVVALEFLHMM----------GIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
             +   L +LH             I +RD+K +NVL++++    + DF L+LK +   S 
Sbjct: 128 ETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSA 187

Query: 245 A 245
            
Sbjct: 188 G 188

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM------DKRELVSRNKESRARI 135
             L+F+ +LG G+ GSV + +      N G   A K +        R+            
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER--------- 60

Query: 136 EREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRF 192
           E EIL+ L H  +            R   L+ E+ P G L   L++ +   R     +  
Sbjct: 61  EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQ 118

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           Y S++   +E+L     I+RDL   N+LV ++  + + DF L+
Sbjct: 119 YTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 35/164 (21%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-------MDKRELVSRNKESRAR 134
             L+ +  LG G  G V L      +   G   A K          +             
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQ-------- 82

Query: 135 IEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVR 191
            E +IL  L H  +                L+ E+ P G L   L +         + + 
Sbjct: 83  -EIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH----SIGLAQLL 137

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +A ++   + +LH    I+RDL   NVL+ +D  + + DF L+
Sbjct: 138 LFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 20/163 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV------MDKRELVSRNKESRARI 135
             L+++ +LG G+ GSV L +      N G   A K         +R+            
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQR--------- 73

Query: 136 EREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRF 192
           E +IL+ L   F+            +   L+ E+ P G L   L++ +   R   S +  
Sbjct: 74  EIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRA--RLDASRLLL 131

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           Y+S++   +E+L     ++RDL   N+LV S+ H+ + DF L+
Sbjct: 132 YSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 27/159 (16%)

Query: 85  RFVHRLGSGDIGSVYL---VQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--I 139
                +  G +G +YL     +      NG     K +    + S + E++A    E   
Sbjct: 83  EVKGCIAHGGLGWIYLALDRNV------NGRPVVLKGL----VHSGDAEAQAMAMAERQF 132

Query: 140 LEMLDHPFLPTLY-----ATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFY 193
           L  + HP +  ++               ++ E+  G  L     Q+ P       A+  Y
Sbjct: 133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAE----AIA-Y 187

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
             E++ AL +LH +G++Y DLKPEN+++  +  + L D 
Sbjct: 188 LLEILPALSYLHSIGLVYNDLKPENIMLTEEQ-LKLIDL 225

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 313 VRSM----SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA 368
           V  +       GT  + APEI+   G   A D +T+G  +  L        G  +   L 
Sbjct: 228 VSRINSFGYLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDLPTRNG-RYVDGLP 285

Query: 369 NVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS 405
                  E             L+ + +  DP +R  +
Sbjct: 286 -------EDDPVLKTYDSYGRLLRRAIDPDPRQRFTT 315

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 85  RFVHRLGSGDIGSVYL---VQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           + V +LG G + +VYL     L           A K +         +E+  R ERE+  
Sbjct: 14  KIVDKLGGGGMSTVYLAEDTIL-------NIKVAIKAI--FIPPREKEETLKRFEREVHN 64

Query: 142 M--LDHPFLPTLYATLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVV 198
              L H  + ++    +      L+ E+  G  L   +    P           + ++++
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGP---LSVDTAINFTNQIL 121

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
             ++  H M I++RD+KP+N+L+ S+  + + DF ++     ++ T 
Sbjct: 122 DGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQ 168

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL- 375
             +GT +Y +PE   GE      D +++GI ++E+  G  PF G          V+ A+ 
Sbjct: 171 HVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNG-------ETAVSIAIK 223

Query: 376 ----EFPKEPS-----VPGPAKDLIAQLLVKDPTRR 402
                 P   +     +P    ++I +   KD   R
Sbjct: 224 HIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANR 259

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM-------DKRELVSRNKESRAR 134
           ++ + +  LGSG  G+VY      +        A K +         +E++         
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILD-------- 66

Query: 135 IEREILEMLDHPFLPTLYAT-LDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRF 192
            E  ++  +D+P +  L    L       L+T+  P G L   +R+           +  
Sbjct: 67  -EAYVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCLLDYVREH--KDNIGSQYLLN 121

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
           +  ++   + +L    +++RDL   NVLV++  H+ +TDF L+  L  +     A+
Sbjct: 122 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE 177

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 16/166 (9%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEM 142
           R    +G G +G VY  +   +        A K+M   E +S +   R R++RE      
Sbjct: 37  RLRRLVGRGGMGDVYEAEDTVR----ERIVALKLM--SETLSSDPVFRTRMQREARTAGR 90

Query: 143 LDHPFLPTLYAT--LDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVV 199
           L  P +  ++    +D   +  +      G DL  +LR++ P              ++  
Sbjct: 91  LQEPHVVPIHDFGEIDGQLY--VDMRLINGVDLAAMLRRQGP---LAPPRAVAIVRQIGS 145

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           AL+  H  G  +RD+KPEN+LV +D    L DF ++    +   T 
Sbjct: 146 ALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQ 191

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + VGT  Y+APE  S        D + L   ++E   G+ P++G D    L+ + A   +
Sbjct: 194 NTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQG-D---QLSVMGAHINQ 249

Query: 377 FPKEPS-----VPGPAKDLIAQLLVKDPTRRMGS 405
               PS     +P     +IA+ + K+P  R  +
Sbjct: 250 AIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVT 283

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-------MDKRELVSRNKESRAR 134
           ++LR +  LGSG  G+V+      +  +       KV          + +          
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD-------- 64

Query: 135 IEREILEMLDHPFLPTLYAT-LDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRF 192
                +  LDH  +  L            L+T++ P G L   +RQ +         +  
Sbjct: 65  -HMLAIGSLDHAHIVRLLGLCPGSSLQ--LVTQYLPLGSLLDHVRQHRG--ALGPQLLLN 119

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
           +  ++   + +L   G+++R+L   NVL++S   + + DF ++  L  D+      
Sbjct: 120 WGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYS 175

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 19/193 (9%)

Query: 46  KTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKS 105
           +  +       DP  +A+ + T+E         +  S +     +G+G+ G VY   LK+
Sbjct: 18  ENLYFQGAMGSDPN-QAVLKFTTE---------IHPSCVTRQKVIGAGEFGEVYKGMLKT 67

Query: 106 KSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA--TLDCPRWSCL 163
            S       A K +  +   +  +      E  I+    H  +  L    +   P    +
Sbjct: 68  SSGKKEVPVAIKTL--KAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM--I 123

Query: 164 LTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           +TE+   G L   LR++  D  F    +      +   +++L  M  ++RDL   N+LV 
Sbjct: 124 ITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVN 181

Query: 223 SDGHIMLTDFDLS 235
           S+    ++DF LS
Sbjct: 182 SNLVCKVSDFGLS 194

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 30/159 (18%)

Query: 85  RFVHRLGSGDIGSVYL---------VQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI 135
           R +   G       +          V             A   +D +       +     
Sbjct: 34  RLLIFHGGVPPLQFWQALDTALDRQV-------------ALTFVDPQ--GVLPDDVLQET 78

Query: 136 ERE--ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
                 L  +D P +  +   +       ++ E+  GG L  +    P       A+R  
Sbjct: 79  LSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPS---PVGAIR-A 134

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF 232
              +  A +  H  G+      P  V V  DG ++L   
Sbjct: 135 MQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYP 173

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           +     +              D   +G  ++ L     P         LA         P
Sbjct: 170 LAYPATMPDA-------NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQP 222

Query: 379 KEPS-----VPGPAKDLIAQLLVKDPTRR 402
            EP+     +P     + A+ +  D   R
Sbjct: 223 IEPADIDRDIPFQISAVAARSVQGDGGIR 251

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 52/284 (18%), Positives = 94/284 (33%), Gaps = 78/284 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEML--- 143
           +G G  G V    L  +  +N  ++A KV+       RN +     A+IE +IL+ +   
Sbjct: 43  MGDGTFGRV----LLCQHIDNKKYYAVKVV-------RNIKKYTRSAKIEADILKKIQND 91

Query: 144 ---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVV 199
              ++  +   +         CL+ E   G  L+ ++ +      FH   ++ Y  E++ 
Sbjct: 92  DINNNNIV-KYHGKFMYYDHMCLIFEPL-GPSLYEIITRNN-YNGFHIEDIKLYCIEILK 148

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQ 259
           AL +L  M + + DLKPEN+L+                                     +
Sbjct: 149 ALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRR-------------VTDGKKIQIYR 195

Query: 260 PNDCAV---DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM 316
                +   D   FG  +    +     ++                              
Sbjct: 196 TKSTGIKLID---FG-CATFKSDYHGSIINTRQ--------------------------- 224

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
                  Y APE+I   G   + D W+ G  + EL+ G+  F+ 
Sbjct: 225 -------YRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT 261

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 85  RFVHRLGSGDIGSVYL---VQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL- 140
                LG G +  V+L   ++            A KV+ + +L +R+     R  RE   
Sbjct: 15  ELGEILGFGGMSEVHLARDLRD-------HRDVAVKVL-RADL-ARDPSFYLRFRREAQN 65

Query: 141 -EMLDHPFLPTLY----ATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYA 194
              L+HP +  +Y    A         ++ E+  G  L  ++    P             
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVI 122

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
           ++   AL F H  GII+RD+KP N+++ +   + + DF ++    +S ++
Sbjct: 123 ADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           + +GT +YL+PE   G+      D ++LG  ++E+  G  PF G D  +++A       E
Sbjct: 178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTG-DSPVSVA--YQHVRE 234

Query: 377 FPKEPS-----VPGPAKDLIAQLLVKDPTRR 402
            P  PS     +      ++ + L K+P  R
Sbjct: 235 DPIPPSARHEGLSADLDAVVLKALAKNPENR 265

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 24/162 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
           +D+   H+LG G  G VY    K  S       A K      M+  E +          E
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLT----VAVKTLKEDTMEVEEFLK---------E 59

Query: 137 REILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
             +++ + HP L  L    T + P +  ++TEF   G+L   LR+    +      +   
Sbjct: 60  AAVMKEIKHPNLVQLLGVCTREPPFY--IITEFMTYGNLLDYLRECNRQEVSAVVLLYM- 116

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+++  A+E+L     I+RDL   N LV  +  + + DF LS
Sbjct: 117 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 11/170 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARI-EREIL 140
            DLR + +LG G  G V   +  + S       A K + K +++S+ +     I E   +
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCL-KPDVLSQPEAMDDFIREVNAM 75

Query: 141 EMLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
             LDH  L  LY   L  P    ++TE  P G L   LR+ Q    F    +  YA +V 
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMK--MVTELAPLGSLLDRLRKHQG--HFLLGTLSRYAVQVA 131

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
             + +L     I+RDL   N+L+ +   + + DF L   L  ++     Q
Sbjct: 132 EGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 181

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 10/169 (5%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           ++ + +  LGSG  G+VY      +        A K + +     +  +     E  ++ 
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILD-EAYVMA 72

Query: 142 MLDHPFLPTLYAT-LDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
            +D+P +  L    L       L+T+  P G L   +R+           +  +  ++  
Sbjct: 73  SVDNPHVCRLLGICLTSTVQ--LITQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAK 128

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
            + +L    +++RDL   NVLV++  H+ +TDF L+  L  +     A+
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE 177

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R   ++GSG  G +YL          G     +V  K E V + K  +  IE +I +M+ 
Sbjct: 12  RLGRKIGSGSFGDIYLG----TDIAAG----EEVAIKLECV-KTKHPQLHIESKIYKMMQ 62

Query: 145 H-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +PT+        ++ ++ E   G  L  L      ++F    V   A +++  +E+
Sbjct: 63  GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEY 120

Query: 204 LHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLSLK 237
           +H    I+RD+KP+N L+        + + DF L+ K
Sbjct: 121 IHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 58  PCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK 117
           P  K  K      + N +   +  +D+   H+LG G  G VY    K  S       A K
Sbjct: 196 PAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTV----AVK 251

Query: 118 V-----MDKRELVSRNKESRARIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPG 170
                 M+  E +          E  +++ + HP L  L    T + P +  ++TEF   
Sbjct: 252 TLKEDTMEVEEFLK---------EAAVMKEIKHPNLVQLLGVCTREPPFY--IITEFMTY 300

Query: 171 GDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
           G+L   LR+    +      +   A+++  A+E+L     I+R+L   N LV  +  + +
Sbjct: 301 GNLLDYLRECNRQEVSAVVLLYM-ATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKV 359

Query: 230 TDFDLS 235
            DF LS
Sbjct: 360 ADFGLS 365

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 35/178 (19%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
           S +RF+  LG    G VY   L   +        A K +        + E          
Sbjct: 9   SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRH------- 61

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
             E  +   L HP +  L    T D P    ++  +C  GDLH  L  R P      +  
Sbjct: 62  --EAMLRARLQHPNVVCLLGVVTKDQPL--SMIFSYCSHGDLHEFLVMRSPHSDVGSTDD 117

Query: 191 RFYASEVVVALEFLHM-------------MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                  +   +F+H+               ++++DL   NVLV    ++ ++D  L 
Sbjct: 118 DRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLF 175

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DL    ++G G+ G V+  +L++ ++      A K    RE +    + +A+  +E   
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTL----VAVKSC--RETLP--PDLKAKFLQEARI 165

Query: 142 M--LDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASE 196
           +    HP +  L    T   P +  ++ E   GGD    LR      R     +     +
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIY--IVMELVQGGDFLTFLRTEGA--RLRVKTLLQMVGD 221

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
               +E+L     I+RDL   N LV     + ++DF +S
Sbjct: 222 AAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMS 260

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S +     +GSGD G V   +L+     +    A K + K     R +      E  I+ 
Sbjct: 49  SRIHIEKIIGSGDSGEVCYGRLRVPGQRD-VPVAIKAL-KAGYTERQRRDFLS-EASIMG 105

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
             DHP +  L    T        ++TE+   G L   LR    D +F    +      V 
Sbjct: 106 QFDHPNIIRLEGVVTRGRLAM--IVTEYMENGSLDTFLRTH--DGQFTIMQLVGMLRGVG 161

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             + +L  +G ++RDL   NVLV S+    ++DF LS
Sbjct: 162 AGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS 198

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 23/154 (14%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEML- 143
           V +LG G    V+    ++ +  N      K++            + +I+REI  LE L 
Sbjct: 41  VRKLGRGKYSEVF----EAINITNNEKVVVKIL--------KPVKKKKIKREIKILENLR 88

Query: 144 DHPFLPTLYATL--DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             P + TL   +     R   L+ E     D   L Q   D  +    +RFY  E++ AL
Sbjct: 89  GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTD--YD---IRFYMYEILKAL 143

Query: 202 EFLHMMGIIYRDLKPENVLV-RSDGHIMLTDFDL 234
           ++ H MGI++RD+KP NV++      + L D+ L
Sbjct: 144 DYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL 177

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 55/282 (19%), Positives = 92/282 (32%), Gaps = 78/282 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEML--- 143
           LG G  G V      ++        A K++       RN       AR+E  +L+ +   
Sbjct: 27  LGEGTFGKVVECLDHAR---GKSQVALKII-------RNVGKYREAARLEINVLKKIKEK 76

Query: 144 ----DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
                   +  +    +     C+  E   G +    L++    + +    VR  A ++ 
Sbjct: 77  DKENKFLCV-LMSDWFNFHGHMCIAFELL-GKNTFEFLKENN-FQPYPLPHVRHMAYQLC 133

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            AL FLH   + + DLKPEN+L  +     L +   S +  +  +T+  V+D        
Sbjct: 134 HALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVAD-------- 185

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      FG S+          V+  H                             
Sbjct: 186 -----------FG-SATFDHEHHTTIVATRH----------------------------- 204

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
                Y  PE+I   G     D W++G  +FE + G T F+ 
Sbjct: 205 -----YRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 57/284 (20%), Positives = 87/284 (30%), Gaps = 100/284 (35%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEML--- 143
           +G G  G V    +K+         A K++       RN++    +A  E  ILE L   
Sbjct: 105 IGKGSFGQV----VKAYDHKVHQHVALKMV-------RNEKRFHRQAAEEIRILEHLRKQ 153

Query: 144 ----DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
                   +  +          C+  E     +L+ L ++   + F    VR +A  ++ 
Sbjct: 154 DKDNTMNVI-HMLENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQ 211

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQ 259
            L+ LH   II+ DLKPEN        I+L                              
Sbjct: 212 CLDALHKNRIIHCDLKPEN--------ILLKQ---------------------------- 235

Query: 260 PNDCAV---DQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM 316
                +   D   FG SSC     +   +                               
Sbjct: 236 QGRSGIKVID---FG-SSCYEHQRVYTYIQSRF--------------------------- 264

Query: 317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
                  Y APE+I G  +G  +D W+LG  + EL  G     G
Sbjct: 265 -------YRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 34/177 (19%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM------DKRELVSRNKESRAR 134
            D+     LG G  G V+L +  + S        A K +       +++           
Sbjct: 15  RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQR-------- 66

Query: 135 IEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVR 191
            E E+L  L H  +   Y       P    ++ E+   GDL+  LR   PD         
Sbjct: 67  -EAELLTNLQHEHIVKFYGVCGDGDPL--IMVFEYMKHGDLNKFLRAHGPDAMILVDGQP 123

Query: 192 FYASEVVVALEFLHM-------------MGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             A   +   + LH+                ++RDL   N LV ++  + + DF +S
Sbjct: 124 RQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMS 180

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           +   R+G G  G ++       +  N      +V  K E   R+   + R E    ++L 
Sbjct: 13  KVGRRIGEGSFGVIFEG----TNLLNN----QQVAIKFEPR-RSDAPQLRDEYRTYKLLA 63

Query: 145 H-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +P +Y        + L+ +   G  L  L      ++F    V   A +++  ++ 
Sbjct: 64  GCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQS 121

Query: 204 LHMMGIIYRDLKPENVLVRSDGH-----IMLTDFDLSLK 237
           +H   ++YRD+KP+N L+          I + DF +   
Sbjct: 122 IHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 29/172 (16%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
             +     LG G  G VY    K    +      A K +       ++ E ++       
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLN------- 77

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
             E  +++  +   +  L    +   P    ++ E    GDL   LR  +P    +    
Sbjct: 78  --EASVMKEFNCHHVVRLLGVVSQGQPT--LVIMELMTRGDLKSYLRSLRPAMANNPVLA 133

Query: 191 RF-------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                     A E+   + +L+    ++RDL   N +V  D  + + DF ++
Sbjct: 134 PPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMT 185

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 82  SDLRFVHR-LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
             L    + LGSG+ G+V     + K        A K++ K E      +     E  ++
Sbjct: 16  KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTV--AVKIL-KNEANDPALKDELLAEANVM 72

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
           + LD+P++  +    +   W  L+ E    G L+  L+Q    +   +  +     +V +
Sbjct: 73  QQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSM 128

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
            +++L     ++RDL   NVL+ +  +  ++DF LS  L+ D +   AQ
Sbjct: 129 GMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 177

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 64.9 bits (159), Expect = 6e-12
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 26/162 (16%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
           S+L FV  +GSG  G V+L    +K        A K      M + + +          E
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDK-----VAIKTIREGAMSEEDFIE---------E 53

Query: 137 REILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFY 193
            E++  L HP L  LY       P    L+TEF   G L   LR +     F    +   
Sbjct: 54  AEVMMKLSHPKLVQLYGVCLEQAPIC--LVTEFMEHGCLSDYLRTQ--RGLFAAETLLGM 109

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +V   + +L    +I+RDL   N LV  +  I ++DF ++
Sbjct: 110 CLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 10/157 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           +++     +G+G+ G V   +LK  S       A K + K     + +      E  I+ 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKE-ISVAIKTL-KVGYTEKQRRDFLG-EASIMG 101

Query: 142 MLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
             DHP +  L    T   P    ++TE+   G L   LR+   D +F    +      + 
Sbjct: 102 QFDHPNIIRLEGVVTKSKPVM--IVTEYMENGSLDSFLRKH--DAQFTVIQLVGMLRGIA 157

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +++L  MG ++RDL   N+L+ S+    ++DF L 
Sbjct: 158 SGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG 194

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 33/176 (18%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM------DKRELVSRNKESRAR 134
            D+     LG G  G V+L +  +          A K +       +++           
Sbjct: 41  RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQR-------- 92

Query: 135 IEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVR 191
            E E+L ML H  +   +   T   P    ++ E+   GDL+  LR   PD +       
Sbjct: 93  -EAELLTMLQHQHIVRFFGVCTEGRPL--LMVFEYMRHGDLNRFLRSHGPDAKLLAGGED 149

Query: 192 F------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                         AS+V   + +L  +  ++RDL   N LV     + + DF +S
Sbjct: 150 VAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMS 205

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 52/282 (18%), Positives = 85/282 (30%), Gaps = 78/282 (27%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEML--- 143
           LG G  G V            G   A K++       +N +     AR E ++LE L   
Sbjct: 22  LGEGAFGKVVECI---DHKAGGRHVAVKIV-------KNVDRYCEAARSEIQVLEHLNTT 71

Query: 144 ----DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVV 198
                   +  +    +     C++ E   G   +  +++      F    +R  A ++ 
Sbjct: 72  DPNSTFRCV-QMLEWFEHHGHICIVFELL-GLSTYDFIKENG-FLPFRLDHIRKMAYQIC 128

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQ 258
            ++ FLH   + + DLKPEN+L     +    +  +        +    V D        
Sbjct: 129 KSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVD-------- 180

Query: 259 QPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF 318
                      FG S+          VS  H                             
Sbjct: 181 -----------FG-SATYDDEHHSTLVSTRH----------------------------- 199

Query: 319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKG 360
                Y APE+I   G     D W++G  + E + G T F  
Sbjct: 200 -----YRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 24/173 (13%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM----DKRELVSRNKESRARIER 137
            +L+ +  +G G+ G V L   +          A K +      +  ++         E 
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYRGNK------VAVKCIKNDATAQAFLA---------EA 237

Query: 138 EILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYA 194
            ++  L H  L  L      +      ++TE+   G L   LR R       +  ++F +
Sbjct: 238 SVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-S 295

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
            +V  A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L
Sbjct: 296 LDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 348

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKS------KSSNNGCFFAAKVMDKRELVSRNKESRARI 135
            ++  +  LGSG  G V L + K       K    G       M + E            
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS------MSEDEFFQ--------- 52

Query: 136 EREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRF 192
           E + +  L HP L   Y   + + P +  ++TE+   G L + LR     K    S +  
Sbjct: 53  EAQTMMKLSHPKLVKFYGVCSKEYPIY--IVTEYISNGCLLNYLRSH--GKGLEPSQLLE 108

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
              +V   + FL     I+RDL   N LV  D  + ++DF ++
Sbjct: 109 MCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMT 151

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 9/156 (5%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             +     +G G  G V+     S   N     A K   K       +E   + E   + 
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPE-NPALAVAIKTC-KNCTSDSVREKFLQ-EALTMR 71

Query: 142 MLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVV 199
             DHP +  L     + P W  ++ E C  G+L   L+ R+       +++  YA ++  
Sbjct: 72  QFDHPHIVKLIGVITENPVW--IIMELCTLGELRSFLQVRKY--SLDLASLILYAYQLST 127

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           AL +L     ++RD+   NVLV S+  + L DF LS
Sbjct: 128 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 163

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
            LG G+ GSV     + +        A KV+ K+     + E   R E +I+  LD+P++
Sbjct: 343 ELGCGNFGSVRQGVYRMR--KKQIDVAIKVL-KQGTEKADTEEMMR-EAQIMHQLDNPYI 398

Query: 149 PTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
             L           L+ E   GG LH  L  +   +    S V     +V + +++L   
Sbjct: 399 VRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVSMGMKYLEEK 455

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
             ++R+L   NVL+ +  +  ++DF LS  L  D+S  TA+
Sbjct: 456 NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 24/161 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM----DKRELVSRNKESRARIER 137
            +L+ +  +G G+ G V L   +          A K +      +  ++         E 
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYRGNK------VAVKCIKNDATAQAFLA---------EA 65

Query: 138 EILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYA 194
            ++  L H  L  L      +      ++TE+   G L   LR R       +  ++F +
Sbjct: 66  SVMTQLRHSNLVQLLGVIVEEKGGL-YIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKF-S 123

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +V  A+E+L     ++RDL   NVLV  D    ++DF L+
Sbjct: 124 LDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLT 164

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 37/182 (20%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM-------DKRELVSRNKESRAR 134
           +D++F   +G G+ G V   ++K          A K M       D R+           
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDA--AIKRMKEYASKDDHRDFAG-------- 74

Query: 135 IEREILEML-DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
            E E+L  L  HP +  L             L  E+ P G+L   LR+ +  +     A+
Sbjct: 75  -ELEVLCKLGHHPNIINLLGACEHRGYL--YLAIEYAPHGNLLDFLRKSRVLETDPAFAI 131

Query: 191 RFYASEVVVALEFLHM-------------MGIIYRDLKPENVLVRSDGHIMLTDFDLSLK 237
               +  + + + LH                 I+RDL   N+LV  +    + DF LS  
Sbjct: 132 ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRG 191

Query: 238 GD 239
            +
Sbjct: 192 QE 193

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 10/205 (4%)

Query: 33  SGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGS 92
           S    +++     ++H       DD      +E T    +  +   +    +     +G 
Sbjct: 342 SIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDYE-IQRERIELGRCIGE 400

Query: 93  GDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLY 152
           G  G V+     S   N     A K   K       +E   + E   +   DHP +  L 
Sbjct: 401 GQFGDVHQGIYMSPE-NPAMAVAIKTC-KNCTSDSVREKFLQ-EALTMRQFDHPHIVKLI 457

Query: 153 A-TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVVVALEFLHMMGII 210
               + P W  ++ E C  G+L   L+ R+       +++  YA ++  AL +L     +
Sbjct: 458 GVITENPVW--IIMELCTLGELRSFLQVRKF--SLDLASLILYAYQLSTALAYLESKRFV 513

Query: 211 YRDLKPENVLVRSDGHIMLTDFDLS 235
           +RD+   NVLV S+  + L DF LS
Sbjct: 514 HRDIAARNVLVSSNDCVKLGDFGLS 538

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 12/164 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
                   LG G+ GSV   QLK +  +     A K++ K ++++ +       E   ++
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSF-VKVAVKML-KADIIASSDIEEFLREAACMK 80

Query: 142 MLDHPFLPTLYA--TLDCPRWS----CLLTEFCPGGDLH-VLRQRQPDKRFHESAVR--- 191
             DHP +  L         +       ++  F   GDLH  L   +  +      ++   
Sbjct: 81  EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLV 140

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +  ++   +E+L     I+RDL   N ++  D  + + DF LS
Sbjct: 141 RFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLS 184

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 45/187 (24%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
            +L     LG G+ G V            G    A K++       + R+L+S       
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLS------- 75

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
             E  +L+ ++HP +  LY   + D P    L+ E+   G L   LR+ +     +  + 
Sbjct: 76  --EFNVLKQVNHPHVIKLYGACSQDGPL--LLIVEYAKYGSLRGFLRESRKVGPGYLGSG 131

Query: 191 RF---------------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM- 228
                                  +A ++   +++L  M +++RDL   N+LV ++G  M 
Sbjct: 132 GSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILV-AEGRKMK 190

Query: 229 LTDFDLS 235
           ++DF LS
Sbjct: 191 ISDFGLS 197

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 82  SDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
            +L      LG G+ GSV     + +        A KV+ K+     + E   R E +I+
Sbjct: 9   DNLLIADIELGCGNFGSVRQGVYRMRKKQIDV--AIKVL-KQGTEKADTEEMMR-EAQIM 64

Query: 141 EMLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
             LD+P++  L            L+ E   GG LH  L  +   +    S V     +V 
Sbjct: 65  HQLDNPYIVRLIGVCQAEALM--LVMEMAGGGPLHKFLVGK--REEIPVSNVAELLHQVS 120

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQ 246
           + +++L     ++RDL   NVL+ +  +  ++DF LS  L  D+S  TA+
Sbjct: 121 MGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 170

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 43/186 (23%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
           +++ +V  +G G  G V+  +             A K++        + +          
Sbjct: 47  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR------- 99

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
             E  ++   D+P +  L     +  P   CLL E+   GDL+  LR   P      S  
Sbjct: 100 --EAALMAEFDNPNIVKLLGVCAVGKPM--CLLFEYMAYGDLNEFLRSMSPHTVCSLSHS 155

Query: 191 RF---------------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML 229
                                   A +V   + +L     ++RDL   N LV  +  + +
Sbjct: 156 DLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKI 215

Query: 230 TDFDLS 235
            DF LS
Sbjct: 216 ADFGLS 221

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
             L+   +LG+G  G V++      +       A K      M     ++         E
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTK-----VAVKTMKPGSMSVEAFLA---------E 233

Query: 137 REILEMLDHPFLPTLYATLDCPRWS-CLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYA 194
             +++ L H  L  L+A     +    ++TEF   G L   L+  +  K+     + F +
Sbjct: 234 ANVMKTLQHDKLVKLHAV--VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDF-S 290

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++   + F+     I+RDL+  N+LV +     + DF L+
Sbjct: 291 AQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLA 331

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
             LR   +LG G  G V++      +       A K      M     +          E
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTR-----VAIKTLKPGTMSPEAFLQ---------E 229

Query: 137 REILEMLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYA 194
            ++++ L H  L  LYA   + P +  ++TE+   G L   L+            V   A
Sbjct: 230 AQVMKKLRHEKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKGETGKYLRLPQLVDM-A 286

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++   + ++  M  ++RDL+  N+LV  +    + DF L+
Sbjct: 287 AQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 327

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 25/218 (11%)

Query: 26  SETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLR 85
           S         N  +    +        R          K   S    +++          
Sbjct: 3   SHEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHS----SKPTASMPRPHSDWQ--IPDRYE 56

Query: 86  FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEML 143
             H +G+G  G V     ++         A K   K   V  +     RI REI  L  L
Sbjct: 57  IRHLIGTGSYGHVC----EAYDKLEKRVVAIK---KILRVFEDLIDCKRILREIAILNRL 109

Query: 144 DHPFLPTLYATLDCPRWSC-----LLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEV 197
           +H  +  +   +            ++ E     D   + R        H   ++     +
Sbjct: 110 NHDHVVKVLDIVIPKDVEKFDELYVVLEIA-DSDFKKLFRTPVYLTELH---IKTLLYNL 165

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +V ++++H  GI++RDLKP N LV  D  + + DF L+
Sbjct: 166 LVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
             L+ V RLG+G  G V++      +       A K      M     ++         E
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTK-----VAVKSLKQGSMSPDAFLA---------E 58

Query: 137 REILEMLDHPFLPTLYATLDC---PRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRF 192
             +++ L H  L  LYA       P +  ++TE+   G L   L+     K      +  
Sbjct: 59  ANLMKQLQHQRLVRLYAV--VTQEPIY--IITEYMENGSLVDFLKTPSGIKLTINKLLDM 114

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            A+++   + F+     I+RDL+  N+LV       + DF L+
Sbjct: 115 -AAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLA 156

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 32/162 (19%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------- 136
           V ++G G  G VY    K+++   G   A K              + R++          
Sbjct: 8   VEKIGEGTYGVVY----KARNKLTGEVVALK--------------KIRLDTETEGVPSTA 49

Query: 137 -REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
            REI  L+ L+HP +  L   +       L+ EF    DL                ++ Y
Sbjct: 50  IREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSY 108

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +++  L F H   +++RDLKP+N+L+ ++G I L DF L+
Sbjct: 109 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 26/162 (16%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
            DL F+  LG+G  G V   + + +        A K+     M + E +          E
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYD-----VAIKMIKEGSMSEDEFIE---------E 69

Query: 137 REILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFY 193
            +++  L H  L  LY   T   P +  ++TE+   G L + LR+ +   RF    +   
Sbjct: 70  AKVMMNLSHEKLVQLYGVCTKQRPIF--IITEYMANGCLLNYLREMRH--RFQTQQLLEM 125

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +V  A+E+L     ++RDL   N LV   G + ++DF LS
Sbjct: 126 CKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 59/286 (20%), Positives = 100/286 (34%), Gaps = 96/286 (33%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RARIEREILEML--- 143
           +G G  G V    +K+       + A K++       +NK++   +A+IE  +LE++   
Sbjct: 62  IGKGSFGQV----VKAYDRVEQEWVAIKII-------KNKKAFLNQAQIEVRLLELMNKH 110

Query: 144 ---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVV 199
                 ++  L          CL+ E     +L+ +LR     +    +  R +A ++  
Sbjct: 111 DTEMKYYIVHLKRHFMFRNHLCLVFEML-SYNLYDLLRNTN-FRGVSLNLTRKFAQQMCT 168

Query: 200 ALEFLHM--MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGD 257
           AL FL    + II+ DLKPEN        I+L          N   +A  + D       
Sbjct: 169 ALLFLATPELSIIHCDLKPEN--------ILLC---------NPKRSAIKIVD------- 204

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
                       FG SSC +   I   +                                
Sbjct: 205 ------------FG-SSCQLGQRIYQYIQSRF---------------------------- 223

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH 363
                 Y +PE++ G  +  A+D W+LG  + E+  G   F G + 
Sbjct: 224 ------YRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 55/214 (25%)

Query: 66  ATSEGNNNNNNNPLTLS-----------------DLRFVHRLGSGDIGSVY---LVQLKS 105
            +S  +++++ +P+                     L     LG G  G V     V +  
Sbjct: 2   GSSHHHHHHSQDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDK 61

Query: 106 KSSNNGCFFAAKVM-------DKRELVSRNKESRARIEREILEML-DHPFLPTLYA--TL 155
                    A K++       D  +LVS         E E+++M+  H  +  L    T 
Sbjct: 62  DKPKEAVTVAVKMLKDDATEKDLSDLVS---------EMEMMKMIGKHKNIINLLGACTQ 112

Query: 156 DCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAVRF-------------YASEVVVAL 201
           D P    ++ E+   G+L   LR R+P    +   +                  ++   +
Sbjct: 113 DGPL--YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGM 170

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           E+L     I+RDL   NVLV  +  + + DF L+
Sbjct: 171 EYLASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 15/165 (9%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE------LVSRNKESRARIERE 138
           +        + G +Y     S  + +      K   K +         +N   RA    +
Sbjct: 45  KLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQ 104

Query: 139 I-----LEMLDHPFLPTLYAT-LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
           +     L       +PT     +   ++  L+     G  L       P     E +V  
Sbjct: 105 VNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQ 163

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLV--RSDGHIMLTDFDLS 235
            A  ++ ALEFLH    ++ ++  EN+ V       + L  +  +
Sbjct: 164 VACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFA 208

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            D+     LG G  G VY     +         A K   K++    NKE     E  I++
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHK-GEKINVAVKTC-KKDCTLDNKEKFMS-EAVIMK 68

Query: 142 MLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYASEVVV 199
            LDHP +  L     + P W  ++ E  P G+L H L + +         +  Y+ ++  
Sbjct: 69  NLDHPHIVKLIGIIEEEPTW--IIMELYPYGELGHYLERNKN--SLKVLTLVLYSLQICK 124

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A+ +L  +  ++RD+   N+LV S   + L DF LS
Sbjct: 125 AMAYLESINCVHRDIAVRNILVASPECVKLGDFGLS 160

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 48/210 (22%)

Query: 60  WKAIKEATSEGNNNNNNNPLTL----------SDLRFVHRLGSGDIGSVYLVQLKSKSSN 109
           WK I+  + EGN+    +P  L          ++L+F   LG+G  G V           
Sbjct: 16  WKIIE--SYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKE 73

Query: 110 NGCFFAA-KVM-------DKRELVSRNKESRARIEREILEMLD-HPFLPTLYA--TLDCP 158
           +     A K++       +K  L+S         E +I+  L  H  +  L    T   P
Sbjct: 74  DAVLKVAVKMLKSTAHADEKEALMS---------ELKIMSHLGQHENIVNLLGACTHGGP 124

Query: 159 RWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRF-----------YASEVVVALEFLHM 206
               ++TE+C  GDL + LR++        +               ++S+V   + FL  
Sbjct: 125 V--LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS 182

Query: 207 MGIIYRDLKPENVLVRSDGHIM-LTDFDLS 235
              I+RD+   NVL+ ++GH+  + DF L+
Sbjct: 183 KNCIHRDVAARNVLL-TNGHVAKIGDFGLA 211

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 19/157 (12%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV--MDKRELVSRNKESRARIEREI--LEM 142
           + +LG+G   +VY    K  +   G + A K   +D  E       S A I REI  ++ 
Sbjct: 10  LEKLGNGTYATVY----KGLNKTTGVYVALKEVKLDSEEGTP----STA-I-REISLMKE 59

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL----RQRQPDKRFHESAVRFYASEVV 198
           L H  +  LY  +       L+ EF    DL             +    + V+++  +++
Sbjct: 60  LKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLL 118

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             L F H   I++RDLKP+N+L+   G + L DF L+
Sbjct: 119 QGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 31/173 (17%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKS----------KSSNNGCFFAAKVMDKRELVSRNKES 131
           + L     LG G+ GSV    LK           K+        +   +  E +S     
Sbjct: 34  NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDN---SSQREIEEFLS----- 85

Query: 132 RARIEREILEMLDHPFLPTLYA--TLDCPRWSC---LLTEFCPGGDLH-VLRQRQPDKRF 185
               E   ++   HP +  L         +      ++  F   GDLH  L   + +   
Sbjct: 86  ----EAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGP 141

Query: 186 HESAVR---FYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
               ++    +  ++ + +E+L     ++RDL   N ++R D  + + DF LS
Sbjct: 142 KHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLS 194

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 38/181 (20%)

Query: 82  SDLRFVHRLGSGDIGSVY---LVQLKSKSSNNGCFFAAKVM-------DKRELVSRNKES 131
             L     LG G  G V     V +           A K++       D  +LVS     
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS----- 135

Query: 132 RARIEREILEML-DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHE 187
               E E+++M+  H  +  L    T D P    ++ E+   G+L   LR R+P    + 
Sbjct: 136 ----EMEMMKMIGKHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLRARRPPGMEYS 189

Query: 188 SAVRF-------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
             +                  ++   +E+L     I+RDL   NVLV  +  + + DF L
Sbjct: 190 YDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGL 249

Query: 235 S 235
           +
Sbjct: 250 A 250

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 29/172 (16%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
            ++  +  LG G  G VY  Q+    ++      A K +       D+ + +        
Sbjct: 71  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM------- 123

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQPD----KRFH 186
             E  I+   +H  +           PR   +L E   GGDL   LR+ +P         
Sbjct: 124 --EALIISKFNHQNIVRCIGVSLQSLPR--FILLELMAGGDLKSFLRETRPRPSQPSSLA 179

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML---TDFDLS 235
              +   A ++    ++L     I+RD+   N L+   G   +    DF ++
Sbjct: 180 MLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 231

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 29/172 (16%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
            ++  +  LG G  G VY  Q+    ++      A K +       D+ + +        
Sbjct: 30  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM------- 82

Query: 134 RIEREILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLH-VLRQRQP----DKRFH 186
             E  I+   +H  +           PR   +L E   GGDL   LR+ +P         
Sbjct: 83  --EALIISKFNHQNIVRCIGVSLQSLPR--FILMELMAGGDLKSFLRETRPRPSQPSSLA 138

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML---TDFDLS 235
              +   A ++    ++L     I+RD+   N L+   G   +    DF ++
Sbjct: 139 MLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMA 190

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK-------VMDKRELVSRNKESRAR 134
             + F   +G G  G VY   L           A K       + +  + ++        
Sbjct: 25  LIVHFNEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQFLT-------- 75

Query: 135 IEREILEMLDHPFLPTLYA---TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
            E  I++   HP + +L       +      ++  +   GDL   +R            +
Sbjct: 76  -EGIIMKDFSHPNVLSLLGICLRSEGSPL--VVLPYMKHGDLRNFIRNETH--NPTVKDL 130

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +  +V   +++L     ++RDL   N ++     + + DF L+
Sbjct: 131 IGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 175

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 29/213 (13%)

Query: 31  TTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRL 90
           TTS +              +     D    K      + G   +    ++ +D + +   
Sbjct: 7   TTSFAESCKPV-QQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVI--- 62

Query: 91  GSGDIGSVYLVQLKSKSSNNGCFFAAK--VMDKRELVSRNKESRARIEREILEMLDHPFL 148
           G+G  G VY    ++K  ++G   A K  + DKR       ++R   E +I+  LDH  +
Sbjct: 63  GNGSFGVVY----QAKLCDSGELVAIKKVLQDKRF------KNR---ELQIMRKLDHCNI 109

Query: 149 PTL----YATLDCPRWSCL--LTEFCPGGDLH-VLRQRQPDK-RFHESAVRFYASEVVVA 200
             L    Y++ +      L  + ++ P   ++ V R     K       V+ Y  ++  +
Sbjct: 110 VRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 168

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDF 232
           L ++H  GI +RD+KP+N+L+  D  ++ L DF
Sbjct: 169 LAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDF 201

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 23/162 (14%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE----REI--- 139
           V  +G G  G+VY    K++  ++G F A K       V         +     RE+   
Sbjct: 14  VAEIGVGAYGTVY----KARDPHSGHFVALK----SVRVPNGGGGGGGLPISTVREVALL 65

Query: 140 --LEMLDHPFLPTLY-----ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
             LE  +HP +  L      +  D      L+ E     DL     + P        ++ 
Sbjct: 66  RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 124

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
              + +  L+FLH   I++RDLKPEN+LV S G + L DF L
Sbjct: 125 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL 166

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 21/168 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFF---AAKVMDKRELVSRNKESRARIERE 138
            DL F   LG G    ++    +               KV+DK     RN          
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK---AHRNYSESFFEAAS 64

Query: 139 ILEMLDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYAS 195
           ++  L H  L   Y            L+ EF   G L   L++ +     +       A 
Sbjct: 65  MMSKLSHKHLVLNYGVCVCGDENI--LVQEFVKFGSLDTYLKKNKN--CINILWKLEVAK 120

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM--------LTDFDLS 235
           ++  A+ FL    +I+ ++  +N+L+  +            L+D  +S
Sbjct: 121 QLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS 168

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV-----MDKRELVSRNKESRARIE 136
             LR   +LG G  G V++      +       A K      M     +          E
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTR-----VAIKTLKPGTMSPEAFLQ---------E 312

Query: 137 REILEMLDHPFLPTLYA-TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRFYA 194
            ++++ L H  L  LYA   + P +  ++TE+   G L   L+            V   A
Sbjct: 313 AQVMKKLRHEKLVQLYAVVSEEPIY--IVTEYMSKGSLLDFLKGETGKYLRLPQLVDM-A 369

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++   + ++  M  ++RDL+  N+LV  +    + DF L+
Sbjct: 370 AQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 410

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 34/235 (14%)

Query: 12  PDNLSFTSTTTNSGSETTWTTSGSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGN 71
           P          +    +T     +   +     A T H      +    +A++      +
Sbjct: 28  PRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQHVVIGPS 87

Query: 72  NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK-------VMDKREL 124
           +           + F   +G G  G VY   L           A K       + +  + 
Sbjct: 88  S---------LIVHFNEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRITDIGEVSQF 137

Query: 125 VSRNKESRARIEREILEMLDHPFLPTLYA---TLDCPRWSCLLTEFCPGGDLH-VLRQRQ 180
           ++         E  I++   HP + +L       +      ++  +   GDL   +R   
Sbjct: 138 LT---------EGIIMKDFSHPNVLSLLGICLRSEGSPL--VVLPYMKHGDLRNFIRNET 186

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
                    +  +  +V   ++FL     ++RDL   N ++     + + DF L+
Sbjct: 187 H--NPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLA 239

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML- 143
           R   ++GSG  G +YL      +         +V  K E V + K  +   E +I  +L 
Sbjct: 10  RLGRKIGSGSFGEIYLG----TNIQTN----EEVAIKLENV-KTKHPQLLYESKIYRILQ 60

Query: 144 DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +P +        ++ L+ +   G  L  L      ++     V   A +++  +EF
Sbjct: 61  GGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEF 118

Query: 204 LHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLSLK 237
           +H    ++RD+KP+N L+        + + DF L+ K
Sbjct: 119 VHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK 155

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 40/182 (21%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA--------KVMDKRELVSRNKESRA 133
           + L F   LG+G  G V          ++     A         + ++  L+S       
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMS------- 75

Query: 134 RIEREILEML-DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDL-HVLRQRQPDKRFHESA 189
             E ++L  L +H  +  L    T+  P    ++TE+C  GDL + LR+++      +++
Sbjct: 76  --ELKVLSYLGNHMNIVNLLGACTIGGPT--LVITEYCCYGDLLNFLRRKRDSFICSKTS 131

Query: 190 VRF---------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDFD 233
                             ++ +V   + FL     I+RDL   N+L+ + G I  + DF 
Sbjct: 132 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILL-THGRITKICDFG 190

Query: 234 LS 235
           L+
Sbjct: 191 LA 192

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 38/181 (20%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFF---AAKVM-------DKRELVSRNKES 131
             L     LG G  G V L +      +        A K++       D  +L+S     
Sbjct: 69  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS----- 123

Query: 132 RARIEREILEML-DHPFLPTLYA--TLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHE 187
               E E+++M+  H  +  L    T D P    ++ E+   G+L   L+ R+P    + 
Sbjct: 124 ----EMEMMKMIGKHKNIINLLGACTQDGPL--YVIVEYASKGNLREYLQARRPPGLEYS 177

Query: 188 SAVRF-------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
                              A +V   +E+L     I+RDL   NVLV  D  + + DF L
Sbjct: 178 YNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGL 237

Query: 235 S 235
           +
Sbjct: 238 A 238

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 85  RFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVMDKR--------ELVSRNKESRARI 135
           +    +G G  G +YL  + S +S  +      KV            +   R  +     
Sbjct: 38  KVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQ 97

Query: 136 EREILEMLDHPFLPTLYA----TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVR 191
           +      L +  +P  +       +   +  ++ +   G DL  + +    KRF    V 
Sbjct: 98  KWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVL 155

Query: 192 FYASEVVVALEFLHMMGIIYRDLKPENVLV--RSDGHIMLTDFDLS 235
             +  ++  LE++H    ++ D+K  N+L+  ++   + L D+ L+
Sbjct: 156 QLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA 201

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 17/151 (11%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
           ++G G  G V+    K ++ + G   A K   K      +   +    REI  L+ L HP
Sbjct: 10  KIGEGSYGVVF----KCRNRDTGQIVAIK---KFLESEDDPVIKKIALREIRMLKQLKHP 62

Query: 147 FLPTLYATLDCPRWSCLLT---EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            L  L   L+  R    L    E+C    +     R   +   E  V+    + + A+ F
Sbjct: 63  NLVNL---LEVFRRKRRLHLVFEYCDH-TVLHELDRYQ-RGVPEHLVKSITWQTLQAVNF 117

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
            H    I+RD+KPEN+L+     I L DF  
Sbjct: 118 CHKHNCIHRDVKPENILITKHSVIKLCDFGF 148

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 25/165 (15%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAK-------VMDKRELVSRNKESRAR 134
                   +G G  G VY  +   ++  N    A K       +      +         
Sbjct: 21  VVTHSDRVIGKGHFGVVYHGEYIDQA-QNRIQCAIKSLSRITEMQQVEAFLR-------- 71

Query: 135 IEREILEMLDHPFLPTLYA---TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHESAV 190
            E  ++  L+HP +  L       +      +L  +   GDL   +R  Q +    +  +
Sbjct: 72  -EGLLMRGLNHPNVLALIGIMLPPEGLPH--VLLPYMCHGDLLQFIRSPQRNPTVKD-LI 127

Query: 191 RFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            F   +V   +E+L     ++RDL   N ++     + + DF L+
Sbjct: 128 SF-GLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLA 171

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 22/159 (13%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA--------RIEREI--LEML 143
           ++ +VY       S   G   +A        V+  K  R         R  RE+  L+ +
Sbjct: 22  EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM 81

Query: 144 DHPFLPTLYATLDCPRWSC-------LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
            H  +  L   +  P  +        L+  F  G DL  L + +         ++F   +
Sbjct: 82  RHENVIGLL-DVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEKLGEDR---IQFLVYQ 136

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++  L ++H  GII+RDLKP N+ V  D  + + DF L+
Sbjct: 137 MLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA 175

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 30/116 (25%)

Query: 318 FVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--------ELT-- 366
           +V T  Y APE+I +   +   VD W++G  + E+  G T FKG DH        ++T  
Sbjct: 185 YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGT 244

Query: 367 --------LANVVARA--LEFPKEPSVP--------GP-AKDLIAQLLVKDPTRRM 403
                   L +  A+      P+              P A +L+ ++LV D  +R+
Sbjct: 245 PPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRV 300

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 68/364 (18%), Positives = 110/364 (30%), Gaps = 126/364 (34%)

Query: 80  TLSDLRF--VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES---RAR 134
              D R+  V +LG G   +V+L +       N    A K++       R  +     A 
Sbjct: 15  PYKDARYILVRKLGWGHFSTVWLAK----DMVNNTHVAMKIV-------RGDKVYTEAAE 63

Query: 135 IEREILEML--------DHPFLPTLYATLDC-----PRWS--CLLTEFCPGGDLHVLRQR 179
            E ++L+ +        D      +   LD      P      ++ E   G +L  L ++
Sbjct: 64  DEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKK 122

Query: 180 QPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
              +      V+  + ++++ L+++H   GII               H   TD    +K 
Sbjct: 123 YEHRGIPLIYVKQISKQLLLGLDYMHRRCGII---------------H---TD----IKP 160

Query: 239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL 298
           +N      L+     P    Q      D    G ++C                       
Sbjct: 161 ENV-----LMEIVDSPENLIQIKIA--D---LG-NACWYDEHY----------------- 192

Query: 299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPF 358
               T  I              T EY +PE++ G   G   D W+    IFEL  G   F
Sbjct: 193 ----TNSIQ-------------TREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF 235

Query: 359 KGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ---LLVKDPTRRMGSKMGATAIKRH 415
           +  +      +                   D IAQ   LL + P     S +        
Sbjct: 236 EPDEGHSYTKD------------------DDHIAQIIELLGELP-----SYLLRNGKYTR 272

Query: 416 QFFN 419
            FFN
Sbjct: 273 TFFN 276

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 17/157 (10%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R   ++G G+ G + L     K+     + A K+   +     ++  +  +E    + L 
Sbjct: 12  RVGKKIGCGNFGELRLG----KNLYTNEYVAIKLEPMK-----SRAPQLHLEYRFYKQLG 62

Query: 145 H-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +P +Y    C +++ ++ E   G  L  L     D+ F    V   A +++  +E+
Sbjct: 63  SGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEY 120

Query: 204 LHMMGIIYRDLKPENVLVRSDGH-----IMLTDFDLS 235
           +H   +IYRD+KPEN L+   G+     I + DF L+
Sbjct: 121 VHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 55/219 (25%)

Query: 60  WKAIKEATSEGNNNNNNNPLTL----------SDLRFVHRLGSGDIGSVYLVQLKSKSSN 109
            + ++   S  N     +               +L F   LGSG  G V        S  
Sbjct: 13  LQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKT 72

Query: 110 NGCFFAA--------KVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA--TLDCP 158
                 A           ++  L+S         E +++  L  H  +  L    TL  P
Sbjct: 73  GVSIQVAVKMLKEKADSSEREALMS---------ELKMMTQLGSHENIVNLLGACTLSGP 123

Query: 159 RWSCLLTEFCPGGDL-HVLRQRQPDKRFHESAVRF--------------------YASEV 197
               L+ E+C  GDL + LR ++      E                         +A +V
Sbjct: 124 I--YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQV 181

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIM-LTDFDLS 235
              +EFL     ++RDL   NVLV + G ++ + DF L+
Sbjct: 182 AKGMEFLEFKSCVHRDLAARNVLV-THGKVVKICDFGLA 219

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 22/159 (13%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA--------RIEREI--LEML 143
           ++   Y       S   G   AA        V+  K SR         R  RE+  L+ +
Sbjct: 26  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM 85

Query: 144 DHPFLPTLYATLDCPRWSC-------LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
            H  +  L   +  P  S        L+T    G DL+ + + Q     H   V+F   +
Sbjct: 86  KHENVIGLL-DVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDH---VQFLIYQ 140

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++  L+++H   II+RDLKP N+ V  D  + + DF L+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA 179

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 30/116 (25%)

Query: 318 FVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--------ELT-- 366
           +V T  Y APEI+ +   +   VD W++G  + EL  G T F G DH         L   
Sbjct: 189 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT 248

Query: 367 --------LANVVARA--LEFPKEPSVP--------GP-AKDLIAQLLVKDPTRRM 403
                   +++  AR       + P +          P A DL+ ++LV D  +R+
Sbjct: 249 PGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRI 304

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKV--MDKRELVSRNKESRARIEREI--LEM 142
           + +LG G   +VY    K KS       A K   ++  E         A I RE+  L+ 
Sbjct: 7   LDKLGEGTYATVY----KGKSKLTDNLVALKEIRLEHEEGAP----CTA-I-REVSLLKD 56

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           L H  + TL+  +   +   L+ E+    DL            +   V+ +  +++  L 
Sbjct: 57  LKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQY-LDDCGNIINMHNVKLFLFQLLRGLA 114

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           + H   +++RDLKP+N+L+   G + L DF L+
Sbjct: 115 YCHRQKVLHRDLKPQNLLINERGELKLADFGLA 147

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 137 REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           REI  L+ L H  +  LY  +   +   L+ E     DL  L              + + 
Sbjct: 49  REISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCE-GGLESVTAKSFL 106

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++  + + H   +++RDLKP+N+L+  +G + + DF L+
Sbjct: 107 LQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 37/180 (20%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA-KVM-------DKRELVSRNKESRA 133
             L+    LG G  G V             C   A K++       + R L+S       
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMS------- 79

Query: 134 RIEREILEMLD-HPFLPTLYA---TLDCPRWSCLLTEFCPGGDLH-VLRQRQPDKRFHES 188
             E +IL  +  H  +  L         P    ++ EFC  G+L   LR ++ +   ++ 
Sbjct: 80  --ELKILIHIGHHLNVVNLLGACTKPGGPL--MVIVEFCKFGNLSTYLRSKRNEFVPYKV 135

Query: 189 AVRF-------------YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           A                Y+ +V   +EFL     I+RDL   N+L+     + + DF L+
Sbjct: 136 APEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 25/143 (17%)

Query: 111 GCFFAAKVMDKRELVSRNKESRA--------RIEREI--LEMLDHPFLPTLYATLDCPRW 160
           G   AA        V+  K SR         R  RE+  ++ ++H  + +L   +  P+ 
Sbjct: 76  GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLL-NVFTPQK 134

Query: 161 SC-------LLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYR 212
           +        L+ E     +L  V++     +R     + +   +++  ++ LH  GII+R
Sbjct: 135 TLEEFQDVYLVMELM-DANLCQVIQMELDHER-----MSYLLYQMLCGIKHLHSAGIIHR 188

Query: 213 DLKPENVLVRSDGHIMLTDFDLS 235
           DLKP N++V+SD  + + DF L+
Sbjct: 189 DLKPSNIVVKSDCTLKILDFGLA 211

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 40/126 (31%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------------- 363
           +V T  Y APE+I G G+   VD W++G  + E+      F G D+              
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 282

Query: 364 -ELTLANVVARALEF----PKEPSVP---------------------GPAKDLIAQLLVK 397
               +  +      +    PK   +                        A+DL++++LV 
Sbjct: 283 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 342

Query: 398 DPTRRM 403
           DP +R+
Sbjct: 343 DPAKRI 348

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 51/275 (18%), Positives = 83/275 (30%), Gaps = 71/275 (25%)

Query: 134 RIEREI--LEMLDHPFLPTLYATLDCPRWSC-----LLTEFCPGGDLH-VLRQRQPDKRF 185
           RI REI  L  L   ++  LY  +            ++ E     DL  + +        
Sbjct: 71  RILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIA-DSDLKKLFKTPIFLTEE 129

Query: 186 HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
           H   ++     +++   F+H  GII+RDLKP N L+  D  + + DF L          A
Sbjct: 130 H---IKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGL----------A 176

Query: 246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE 305
           + ++ +          +     P   N    + +                          
Sbjct: 177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTS-------------------------- 210

Query: 306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIF-ELFYGTTPFKGIDH 363
                        V T  Y APE+I  + +   ++D W+ G  IF EL            
Sbjct: 211 ------------HVVTRWYRAPELILLQENYTKSIDIWSTGC-IFAELLNMLQSHINDPT 257

Query: 364 ELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD 398
                      L FP     P        ++  K 
Sbjct: 258 N-------RFPL-FPGSSCFPLSPDRNSKKVHEKS 284

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 137 REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           REI  L+ L HP + +L   +   R   L+ EF    DL  +          +S ++ Y 
Sbjct: 68  REISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENK-TGLQDSQIKIYL 125

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            +++  +   H   I++RDLKP+N+L+ SDG + L DF L+
Sbjct: 126 YQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 17/152 (11%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI--LEMLDHP 146
            +G G  G V     K ++ + G   A K   K      +K  +    REI  L+ L H 
Sbjct: 32  LVGEGSYGMVM----KCRNKDTGRIVAIK---KFLESDDDKMVKKIAMREIKLLKQLRHE 84

Query: 147 FLPTLYATLDCPRWSCLLT---EFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
            L  L   L+  +         EF     +    +  P        V+ Y  +++  + F
Sbjct: 85  NLVNL---LEVCKKKKRWYLVFEFVDH-TILDDLELFP-NGLDYQVVQKYLFQIINGIGF 139

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            H   II+RD+KPEN+LV   G + L DF  +
Sbjct: 140 CHSHNIIHRDIKPENILVSQSGVVKLCDFGFA 171

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 33/136 (24%), Positives = 46/136 (33%), Gaps = 43/136 (31%)

Query: 321 THE-----YLAPEIISGEGH-GNAVDWWTLG-IFIFELFYGTTPFKG---IDHELTL--- 367
             E     Y APE++ G+   G AVD W +G +   E+F G   F G   ID +L     
Sbjct: 182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVT-EMFMGEPLFPGDSDID-QLYHIMM 239

Query: 368 --------------ANVVARALEFPKE----------PSVPGPAKDLIAQLLVKDPTRRM 403
                          N V   +  P+           P +     DL  + L  DP +R 
Sbjct: 240 CLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKR- 298

Query: 404 GSKMGATAIKRHQFFN 419
                   +  H FF 
Sbjct: 299 ---PFCAELLHHDFFQ 311

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 25/160 (15%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA--------RIEREI--LEML 143
            +   Y       S   G   AA        V+  K SR         R  RE+  ++ +
Sbjct: 22  TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCV 81

Query: 144 DHPFLPTLYATLDCPRWSC-------LLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYAS 195
           +H  +  L   +  P+ S        ++ E     +L  V++     +R     + +   
Sbjct: 82  NHKNIIGLL-NVFTPQKSLEEFQDVYIVMELM-DANLCQVIQMELDHER-----MSYLLY 134

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  ++ LH  GII+RDLKP N++V+SD  + + DF L+
Sbjct: 135 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 40/126 (31%)

Query: 318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------------- 363
           +V T  Y APE+I G G+   VD W++G  + E+  G   F G DH              
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 245

Query: 364 -ELTLANVVARALEF----PKEPSVP---------------------GPAKDLIAQLLVK 397
               +  +      +    PK                            A+DL++++LV 
Sbjct: 246 CPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 305

Query: 398 DPTRRM 403
           D ++R+
Sbjct: 306 DASKRI 311

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 33/162 (20%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------- 136
           + ++G G  G+V+    K+K+       A K              R R++          
Sbjct: 7   LEKIGEGTYGTVF----KAKNRETHEIVALK--------------RVRLDDDDEGVPSSA 48

Query: 137 -REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
            REI  L+ L H  +  L+  L   +   L+ EFC   DL                V+ +
Sbjct: 49  LREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCN-GDLDPEIVKSF 106

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
             +++  L F H   +++RDLKP+N+L+  +G + L +F L+
Sbjct: 107 LFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 42/246 (17%), Positives = 84/246 (34%), Gaps = 79/246 (32%)

Query: 134 RIEREIL---EMLDHP--------FLPT----LYATLDCPRWSCLLTEFCPGGDLHVLRQ 178
           R  REI+   E+  H                 +Y          L+ ++    DLH + +
Sbjct: 54  RTFREIMILTELSGHENIVNLLNVLRADNDRDVY----------LVFDYM-ETDLHAVIR 102

Query: 179 RQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
               +  H    ++   +++  +++LH  G+++RD+KP N+L+ ++ H+ + DF L    
Sbjct: 103 ANILEPVH---KQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGL---- 155

Query: 239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL 298
                 ++   +    T +   +     +    +   +                      
Sbjct: 156 ------SRSFVNIRRVTNNIPLSINENTENFDDDQPIL---------------------- 187

Query: 299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTP 357
               T              +V T  Y APEI+     +   +D W+LG  + E+  G   
Sbjct: 188 ----TD-------------YVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPI 230

Query: 358 FKGIDH 363
           F G   
Sbjct: 231 FPGSST 236

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 25/160 (15%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRA--------RIEREI--LEML 143
           ++   Y+      S   G   +A      E V+  K SR         R  RE+  L+ +
Sbjct: 21  ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM 80

Query: 144 DHPFLPTLYATLDCPRWSC-------LLTEFCPGGDLH-VLRQRQPDKRFHESAVRFYAS 195
            H  +  L   +  P  S        L+  F    DL  ++  +  +++     +++   
Sbjct: 81  QHENVIGLL-DVFTPASSLRNFYDFYLVMPFM-QTDLQKIMGLKFSEEK-----IQYLVY 133

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
           +++  L+++H  G+++RDLKP N+ V  D  + + DF L+
Sbjct: 134 QMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA 173

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 30/116 (25%)

Query: 318 FVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--------ELT-- 366
           +V T  Y APE+I S   +   VD W++G  + E+  G T FKG D+        ++T  
Sbjct: 183 YVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 242

Query: 367 --------LANVVARAL--EFPKEPSVP--------GP-AKDLIAQLLVKDPTRRM 403
                   L +  A++     P+ P            P A DL+ ++L  D  +R+
Sbjct: 243 PGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRL 298

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 137 REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYA 194
           REI  L+ L HP +  L           L+ +F    DL V+  +        S ++ Y 
Sbjct: 61  REIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVI-IKDNSLVLTPSHIKAYM 118

Query: 195 SEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
              +  LE+LH   I++RDLKP N+L+  +G + L DF L
Sbjct: 119 LMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGL 158

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 137 REI-----LEMLDHPFLPTLYATLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFH 186
           RE+     LE  +HP +  L+      R        L+ E     DL     + P+    
Sbjct: 60  REVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVP 118

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
              ++    +++  L+FLH   +++RDLKP+N+LV S G I L DF L
Sbjct: 119 TETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL 166

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 44/160 (27%)

Query: 321 THE-----YLAPEIISGEGHGNAVDWWTLG-IFIFELFYGTTPFKGIDHELTLANVVARA 374
           T       Y APE++    +   VD W++G IF  E+F     F+G   ++     +   
Sbjct: 177 TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIF-AEMFRRKPLFRG-SSDVDQLGKILDV 234

Query: 375 L-----------------EFPKEPSVP---------GPAKDLIAQLLVKDPTRRMGSKMG 408
           +                  F  + + P            KDL+ + L  +P +R+     
Sbjct: 235 IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRI----- 289

Query: 409 ATAIK--RHQFFNGVNWALLRCAKPPFIPRPVTCRDLTTT 446
            +A     H +F  +     +      +P      +L T 
Sbjct: 290 -SAYSALSHPYFQDLE--RCKENLDSHLPPSQNTSELNTA 326

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 18/165 (10%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR--------ELVSRNKESRARIE 136
               ++GSG  G +YL    +           KV  +         +   R  +     +
Sbjct: 40  VLGKKIGSGGFGLIYLAF-PTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKK 98

Query: 137 REILEMLDHPFLPTLY----ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
               + LD+  +P  Y           +  ++ E   G DL  +  +  +  F +S V  
Sbjct: 99  WIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQ--NGTFKKSTVLQ 155

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLV--RSDGHIMLTDFDLS 235
               ++  LE++H    ++ D+K  N+L+  ++   + L D+ LS
Sbjct: 156 LGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLS 200

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 41/169 (24%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------- 136
           + ++G G  G V+    K++    G   A K              +  +E          
Sbjct: 22  LAKIGQGTFGEVF----KARHRKTGQKVALK--------------KVLMENEKEGFPITA 63

Query: 137 -REI--LEMLDHPFLPTLY-----ATLDCPRWSC---LLTEFCPGGDLHVLRQRQPDKRF 185
            REI  L++L H  +  L            R      L+ +FC   DL  L       +F
Sbjct: 64  LREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGL-LSNVLVKF 121

Query: 186 HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL 234
             S ++     ++  L ++H   I++RD+K  NVL+  DG + L DF L
Sbjct: 122 TLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGL 170

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 31/208 (14%)

Query: 34  GSNPSSSTPSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSG 93
           GS   S+ P      +      DDP  K IK   S+G        +  ++ +    +G+G
Sbjct: 1   GSFTMSNAPLNGVKLNP----LDDPN-KVIKVLASDGKTGEQR-EIAYTNCK---VIGNG 51

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTL-- 151
             G V+    ++K   +      +V  K+ L  +  ++R   E +I+ ++ HP +  L  
Sbjct: 52  SFGVVF----QAKLVESD-----EVAIKKVLQDKRFKNR---ELQIMRIVKHPNVVDLKA 99

Query: 152 --YATLDCPRWSC--LLTEFCPGGDLH-VLRQR-QPDKRFHESAVRFYASEVVVALEFLH 205
             Y+  D        L+ E+ P   ++   R   +  +      ++ Y  +++ +L ++H
Sbjct: 100 FFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH 158

Query: 206 MMGIIYRDLKPENVLVRSDGHIM-LTDF 232
            +GI +RD+KP+N+L+     ++ L DF
Sbjct: 159 SIGICHRDIKPQNLLLDPPSGVLKLIDF 186

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 134 RIEREI--LEMLDHPFLPTLYATLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFH 186
           R  REI  L+   H  + T++       +       ++ E     DLH +   Q     H
Sbjct: 55  RTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM-QTDLHRVISTQMLSDDH 113

Query: 187 ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
              ++++  + + A++ LH   +I+RDLKP N+L+ S+  + + DF L+   D S +   
Sbjct: 114 ---IQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS 170

Query: 247 LVSDQSP 253
             + Q  
Sbjct: 171 EPTGQQS 177

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 31/116 (26%)

Query: 319 VGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------------- 363
           V T  Y APE++ +   +  A+D W+ G  + ELF     F G D+              
Sbjct: 183 VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTP 242

Query: 364 --ELTLANVV-ARALEF----PKEPSVP--------GP-AKDLIAQLLVKDPTRRM 403
             +  L  +   RA E+    P  P+ P         P   DL+ ++LV DP +R+
Sbjct: 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRI 298

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 134 RIEREI--LEMLDHPFLPTLYATLDCPRWSC-----LLTEFCPGGDLH-VLRQRQPD-KR 184
           R+ REI  L    HP +  L                L+TE     DL  V+  ++     
Sbjct: 75  RVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELM-RTDLAQVIHDQRIVISP 133

Query: 185 FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS 235
            H   ++++   +++ L  LH  G+++RDL P N+L+  +  I + DF+L+
Sbjct: 134 QH---IQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLA 181

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 31/117 (26%)

Query: 318 FVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--------ELT-- 366
           +V    Y APE++   +G    VD W+ G  + E+F     F+G           E+   
Sbjct: 193 YVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGT 252

Query: 367 --------LANVVARALEFPKEPSVPGP------------AKDLIAQLLVKDPTRRM 403
                    ++  AR        +VP              A DLIA++L  +P RR+
Sbjct: 253 PKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRI 309

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 94  DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-------RNKESRARIEREI--LEMLD 144
           D+G  Y           G   +A     +  V+        ++    R  REI  L    
Sbjct: 24  DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 83

Query: 145 HPFLPTLYATLDCPRWSC-----LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           H  +  +   +  P         ++ +     DL+ L + Q     H   + ++  +++ 
Sbjct: 84  HENIIGINDIIRAPTIEQMKDVYIVQDLM-ETDLYKLLKTQHLSNDH---ICYFLYQILR 139

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD 250
            L+++H   +++RDLKP N+L+ +   + + DF L+   D        +++
Sbjct: 140 GLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTE 190

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 39/166 (23%)

Query: 87  VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---------- 136
           + +LG G  G VY    K+  +      A K              R R+E          
Sbjct: 39  ITKLGEGTYGEVY----KAIDTVTNETVAIK--------------RIRLEHEEEGVPGTA 80

Query: 137 -REI--LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFY 193
            RE+  L+ L H  +  L + +       L+ E+    DL     + PD       ++ +
Sbjct: 81  IREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAEN-DLKKYMDKNPD--VSMRVIKSF 137

Query: 194 ASEVVVALEFLHMMGIIYRDLKPENVLV-----RSDGHIMLTDFDL 234
             +++  + F H    ++RDLKP+N+L+          + + DF L
Sbjct: 138 LYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL 148
           ++G G  G VY    K K   +   +A K + +   +S    S  R E  +L  L HP +
Sbjct: 28  KVGRGTYGHVYKA--KRKDGKDDKDYALKQI-EGTGISM---SACR-EIALLRELKHPNV 80

Query: 149 PTLYATLDCPRWSC--LLTEFCPGGDLHVL-------RQRQPDKRFHESAVRFYASEVVV 199
            +L             LL ++    DL  +       +  +   +     V+    +++ 
Sbjct: 81  ISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILD 139

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSD----GHIMLTDFDL 234
            + +LH   +++RDLKP N+LV  +    G + + D   
Sbjct: 140 GIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF 178

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 21/134 (15%)

Query: 134 RIEREI--LEMLDHP--------FLPTLYATLDCPRWSC------LLTEFCPGGDLHVLR 177
              REI  +  LDH           P+     D            ++ E+    DL  + 
Sbjct: 54  HALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM-ETDLANVL 112

Query: 178 QRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDLSL 236
           ++ P    H    R +  +++  L+++H   +++RDLKP N+ + + D  + + DF L+ 
Sbjct: 113 EQGPLLEEH---ARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLAR 169

Query: 237 KGDNSTSTAQLVSD 250
             D   S    +S+
Sbjct: 170 IMDPHYSHKGHLSE 183

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%)

Query: 319 VGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------------- 363
           + T  Y +P ++ S   +  A+D W  G    E+  G T F G                 
Sbjct: 185 LVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVV 244

Query: 364 -ELTLANVVARALEF----PKEPSVP--------GP-AKDLIAQLLVKDPTRRM 403
            E     +++    +      EP  P           A D + Q+L   P  R+
Sbjct: 245 HEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRL 298

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 53/229 (23%), Positives = 81/229 (35%), Gaps = 53/229 (23%)

Query: 34  GSNPSSSTPSAAKTHHAPPRCNDDPCW---KAIKEATSEGNNNNNNNPLTLSDLRFVHRL 90
           GS  S +T S      +      +        ++EAT   NN ++              +
Sbjct: 2   GSKYSKATNSINDALSSSYLVPFESYRVPLVDLEEAT---NNFDHKF-----------LI 47

Query: 91  GSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEMLDHPFL 148
           G G  G VY   L      +G   A K        S    +E     E E L    HP L
Sbjct: 48  GHGVFGKVYKGVL-----RDGAKVALKRRTPE---SSQGIEEFET--EIETLSFCRHPHL 97

Query: 149 PTL--YATLDCPRWSCLLTEFCPGGDL--HVLRQRQP------DKRFH---ESAVRFYAS 195
            +L  +          L+ ++   G+L  H+     P      ++R      +A R    
Sbjct: 98  VSLIGFCDERNEM--ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAA-R---- 150

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
                L +LH   II+RD+K  N+L+  +    +TDF +S KG     T
Sbjct: 151 ----GLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQT 195

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 26/144 (18%)

Query: 111 GCFFAAKVMDKRELVS-----RNKESRARIEREI--LEMLDHPFLPTLYATLDCPRWS-- 161
           G     K       V+     ++   R R  + +  L +L HP +  L +          
Sbjct: 37  GTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR 96

Query: 162 -----CLLTEFCPGGDLH-VLR----QRQPDKRFHESAVRFYASEVVVALEFLHM--MGI 209
                 ++ E+ P   LH   R    ++          ++ +  +++ ++  LH+  + +
Sbjct: 97  RDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPIL---IKVFLFQLIRSIGCLHLPSVNV 152

Query: 210 IYRDLKPENVLV-RSDGHIMLTDF 232
            +RD+KP NVLV  +DG + L DF
Sbjct: 153 CHRDIKPHNVLVNEADGTLKLCDF 176

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 163 LLTEFCPGGDLH-----VLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE 217
           ++ E+ P   LH      +R  +         +  Y  ++  A+ F+H +GI +RD+KP+
Sbjct: 115 VIMEYVPD-TLHKVLKSFIRSGRSIPMNL---ISIYIYQLFRAVGFIHSLGICHRDIKPQ 170

Query: 218 NVLV-RSDGHIMLTDFDLS---LKGDNSTS 243
           N+LV   D  + L DF  +   +  + S +
Sbjct: 171 NLLVNSKDNTLKLCDFGSAKKLIPSEPSVA 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 65/421 (15%), Positives = 130/421 (30%), Gaps = 123/421 (29%)

Query: 88  HRLGSGDIGSVYLVQLKSKSSNNGCF----FAAKVMDKRE----LVSRNKESRAR----- 134
           H+    DI SV+         N  C         ++ K E    ++S++  S        
Sbjct: 14  HQYQYKDILSVFEDAFVD---NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 135 --------IEREILEML--DHPFLPTLYATLDCPRWSCLLTEFC-----------PGGDL 173
                   +++ + E+L  ++ FL +   T +  + S +   +                 
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 174 HVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGI--------IYRDLKPENVLVRSD 224
           +V R  QP  +  ++ +    ++ V+    +  ++G         +    K   V  + D
Sbjct: 130 NVSRL-QPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVALDVCLSYK---VQCKMD 181

Query: 225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPA 284
             I    F L+LK  N  S   ++        +          P + + S    N  +  
Sbjct: 182 FKI----FWLNLK--NCNSPETVL--------EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 285 VSCLHPKRRRKKKLGNPGTPE--IVAEPLD-VRSMSFVGTHEYLAPEIISGEGHGNAVDW 341
            S    +   ++ L +       +V   L  V++            +        NA + 
Sbjct: 228 HSI---QAELRRLLKSKPYENCLLV---LLNVQN-----------AKAW------NAFN- 263

Query: 342 WTLG--IFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP 399
             L   I +      TT FK +   L+ A     +L+       P   K L+ + L   P
Sbjct: 264 --LSCKILL------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 400 TRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRP-----VTCRDLTTTNSSIDNSI 454
                  +    +  +     +    +R      +        V C  LTT    I++S+
Sbjct: 316 -----QDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTI---IESSL 363

Query: 455 E 455
            
Sbjct: 364 N 364

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 30/145 (20%), Positives = 46/145 (31%), Gaps = 11/145 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             L+    LG G  G V             C   A  M K         +    E +IL 
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA-LMSELKILI 80

Query: 142 MLD-HPFLPTLY-ATLDCPRWSCLLTEFCPGGDLHV-LRQRQPDKRFHESAVRFYASEVV 198
            +  H  +  L  A         ++ EFC  G+L   LR ++ +          Y ++  
Sbjct: 81  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNE-------FVPYKTKGA 133

Query: 199 VALEFLHMMGIIYRDLKPENVLVRS 223
              +    +G I  DLK     + S
Sbjct: 134 RFRQGKDYVGAIPVDLKRRLDSITS 158

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 56/208 (26%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM---DKRELVSRNKESRARIERE 138
             L+   ++G G  G V+      ++  +    A K++       +   ++++   I  E
Sbjct: 20  EKLQRCEKIGEGVFGEVF------QTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPE 73

Query: 139 IL-----------EMLDHPFLPTLYA----TLDCPRWSC--------------------- 162
           I+                     L +        P                         
Sbjct: 74  IIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFK 133

Query: 163 -----LLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGIIYRDLK 215
                ++ EF  GG DL  +R +        +  +    ++  +L      +   +RDL 
Sbjct: 134 DDQLFIVLEFEFGGIDLEQMRTKLSS----LATAKSILHQLTASLAVAEASLRFEHRDLH 189

Query: 216 PENVLVRSDGHIMLTDFDLSLKGDNSTS 243
             NVL++      L            + 
Sbjct: 190 WGNVLLKKTSLKKLHYTLNGKSSTIPSC 217

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 40/186 (21%)

Query: 63  IKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR 122
           +K  T    NN +  P+++      +++G G  G VY      K   N    A K +   
Sbjct: 20  LKNVT----NNFDERPISVGG----NKMGEGGFGVVY------KGYVNNTTVAVKKLAAM 65

Query: 123 ELVSR---NKESRARIEREILEMLDHPFLPTL--YATLDCPRWSCLLTEFCPGGD----L 173
             ++     ++     E +++    H  L  L  +++       CL+  + P G     L
Sbjct: 66  VDITTEELKQQFDQ--EIKVMAKCQHENLVELLGFSSDGDDL--CLVYVYMPNGSLLDRL 121

Query: 174 HVLRQRQP---DKRFH--ESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM 228
             L    P     R    + A           + FLH    I+RD+K  N+L+       
Sbjct: 122 SCLDGTPPLSWHMRCKIAQGAAN--------GINFLHENHHIHRDIKSANILLDEAFTAK 173

Query: 229 LTDFDL 234
           ++DF L
Sbjct: 174 ISDFGL 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.95
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.93
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.87
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.8
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.48
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.36
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.28
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.09
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.96
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.77
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.74
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.64
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.49
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.41
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.4
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.39
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	98.08
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.95
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.73
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.69
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.68
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.67
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.58
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.42
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.38
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.38
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.29
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.25
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	97.16
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	97.02
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.39
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.99
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	83.49
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	81.13
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	80.35

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=9.4e-70  Score=526.44  Aligned_cols=278  Identities=35%  Similarity=0.618  Sum_probs=249.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++.+...........+.+|+++|++|+|||||+++++|.+++.
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~----~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~  106 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLAREL----ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK  106 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             ccccEEEEEEecccCeEEEEEEEC----CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCE
Confidence            468999999999999999999987    4889999999998877777778889999999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+....
T Consensus       107 ~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~  184 (311)
T 4aw0_A          107 LYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  184 (311)
T ss_dssp             EEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCC
Confidence            99999999999999999875  6799999999999999999999999999999999999999999999999999976542


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                    .....+++|
T Consensus       185 ~~~--------------------------------------------------------------------~~~~~~~~G  196 (311)
T 4aw0_A          185 ESK--------------------------------------------------------------------QARANSFVG  196 (311)
T ss_dssp             TTT--------------------------------------------------------------------CCCBCCCCS
T ss_pred             CCC--------------------------------------------------------------------cccccCccc
Confidence            111                                                                    112235689


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      |+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.+++...+.+|.  .+++++++||.+||+.||+
T Consensus       197 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~dli~~lL~~dp~  274 (311)
T 4aw0_A          197 TAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPE--KFFPKARDLVEKLLVLDAT  274 (311)
T ss_dssp             CGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT--TCCHHHHHHHHHHSCSSGG
T ss_pred             CcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc--ccCHHHHHHHHHHccCCHh
Confidence            99999999999999999999999999999999999999999988999999998887775  4899999999999999999


Q ss_pred             CCCCCCc--ChHHHhcCCCCCCCCchhhhccCCCCC
Q 012762          401 RRMGSKM--GATAIKRHQFFNGVNWALLRCAKPPFI  434 (457)
Q Consensus       401 ~Rps~~~--~~~~ll~hp~f~~~~~~~~~~~~~~~~  434 (457)
                      +||+..+  ...+|++||||++++|..+....||.+
T Consensus       275 ~R~t~~e~~~~~~i~~Hp~F~~idw~~l~~~~pP~l  310 (311)
T 4aw0_A          275 KRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL  310 (311)
T ss_dssp             GSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCC
T ss_pred             HCcChHHHcCCHHHHCCCCcCCCCHHHhcCCCCCCC
Confidence            9999322  123479999999999999988877754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.7e-68  Score=514.96  Aligned_cols=283  Identities=38%  Similarity=0.731  Sum_probs=241.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..++.++|++++.||+|+||+||+|++.. +..+++.||||++++...... ...++.+|+++|++|+|||||++++++.
T Consensus        19 ~~~~p~~Y~i~~~lG~G~fg~Vy~a~~~~-~~~~~~~vAiK~i~~~~~~~~-~~~~~~~E~~il~~l~HpnIv~l~~~~~   96 (304)
T 3ubd_A           19 EKADPSQFELLKVLGQGSFGKVFLVKKIS-GSDARQLYAMKVLKKATLKVR-DRVRTKMERDILVEVNHPFIVKLHYAFQ   96 (304)
T ss_dssp             CCCCGGGEEEEEEEECGGGCEEEEEEECS-STTTTCEEEEEEEESEEEEEE-ECC------CCCCCCCCTTEECEEEEEE
T ss_pred             ccCCccccEEEEEEecCCCeEEEEEEEcc-CCCCCEEEEEEEEehHHcChH-HHHHHHHHHHHHHHCCCCCCCeEEEEEE
Confidence            34556799999999999999999998653 334788999999987644322 2346778999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +++.+|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+|+
T Consensus        97 ~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~  174 (304)
T 3ubd_A           97 TEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSK  174 (304)
T ss_dssp             ETTEEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEE
T ss_pred             ECCEEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccce
Confidence            999999999999999999999875  679999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                      ....
T Consensus       175 ~~~~~~----------------------------------------------------------------------~~~~  184 (304)
T 3ubd_A          175 ESIDHE----------------------------------------------------------------------KKAY  184 (304)
T ss_dssp             C---------------------------------------------------------------------------CCCC
T ss_pred             eccCCC----------------------------------------------------------------------cccc
Confidence            543211                                                                      1122


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      +++||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.+++...+.+|.  .+++++++||.+||+
T Consensus       185 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~  262 (304)
T 3ubd_A          185 SFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQ--FLSPEAQSLLRMLFK  262 (304)
T ss_dssp             SCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTC
T ss_pred             ccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCC--cCCHHHHHHHHHHcc
Confidence            467999999999999999999999999999999999999999999988889999888777665  489999999999999


Q ss_pred             hCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCC
Q 012762          397 KDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIP  435 (457)
Q Consensus       397 ~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~  435 (457)
                      .||++||+.. ..++||++||||+++||..+  +...|||+|
T Consensus       263 ~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l~~~~~~pP~~P  304 (304)
T 3ubd_A          263 RNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKP  304 (304)
T ss_dssp             SSGGGSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSSCC
T ss_pred             cCHHHCCCCCcCCHHHHHcCccccCCCHHHHHhCCCCcCcCC
Confidence            9999999953 24689999999999999987  467799987

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=5.5e-65  Score=500.14  Aligned_cols=256  Identities=27%  Similarity=0.433  Sum_probs=226.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++.+...   ...+.+.+|+++|+.|+|||||+++++|.+++.
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~----~tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~  145 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVR----SSGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE  145 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEGGGC---SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             hHhcEEeEEeecCcCeEEEEEEEC----CCCCEEEEEEEecCch---hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            357999999999999999999987    4899999999986543   334557789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|||||||+||+|.+++..   +.+++..++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+....
T Consensus       146 ~~ivmEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~  222 (346)
T 4fih_A          146 LWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  222 (346)
T ss_dssp             EEEEECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCC
Confidence            9999999999999999876   5699999999999999999999999999999999999999999999999999875532


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                      ....+++|
T Consensus       223 ~~----------------------------------------------------------------------~~~~~~~G  232 (346)
T 4fih_A          223 EV----------------------------------------------------------------------PRRKSLVG  232 (346)
T ss_dssp             SS----------------------------------------------------------------------CCBCCCCS
T ss_pred             CC----------------------------------------------------------------------Cccccccc
Confidence            11                                                                      11225689


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|||||++.+..|+.++|||||||++|||++|++||.+.+..+.+..+..... .++....+++++++||.+||+.||
T Consensus       233 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP  312 (346)
T 4fih_A          233 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDP  312 (346)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSST
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999999887777777765532 233445689999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++|||    ++|||+||||+.
T Consensus       313 ~~R~t----a~e~l~Hp~~~~  329 (346)
T 4fih_A          313 AQRAT----AAELLKHPFLAK  329 (346)
T ss_dssp             TTSCC----HHHHTTCGGGGG
T ss_pred             hHCcC----HHHHhcCHhhcC
Confidence            99999    999999999984

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.7e-65  Score=501.43  Aligned_cols=261  Identities=21%  Similarity=0.402  Sum_probs=227.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|+++++||+|+||+||+|+++    .+|+.||||++.+.... ......+.+|+++|++|+|||||+++++|.+++
T Consensus        22 sme~Y~~~~~lG~G~fg~V~~a~~~----~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~   96 (350)
T 4b9d_A           22 SMEKYVRLQKIGEGSFGKAILVKST----EDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENG   96 (350)
T ss_dssp             CCCCEEEEEEC------CEEEEEET----TTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             cccceEEeEEEecCCCeEEEEEEEC----CCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECC
Confidence            4689999999999999999999987    48899999999876543 334677889999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|||||||+||+|.+++.......+++..++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+...
T Consensus        97 ~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  176 (350)
T 4b9d_A           97 SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLN  176 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeec
Confidence            99999999999999999987766778999999999999999999999999999999999999999999999999987553


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ...                                                                      ....+++
T Consensus       177 ~~~----------------------------------------------------------------------~~~~~~~  186 (350)
T 4b9d_A          177 STV----------------------------------------------------------------------ELARACI  186 (350)
T ss_dssp             HHH----------------------------------------------------------------------HHHHHHH
T ss_pred             CCc----------------------------------------------------------------------ccccccC
Confidence            210                                                                      0112457


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..+.+.+++...+. +.+..+++++++||.+||+.||
T Consensus       187 GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~-~~~~~~s~~~~~li~~~L~~dP  265 (350)
T 4b9d_A          187 GTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP-PVSLHYSYDLRSLVSQLFKRNP  265 (350)
T ss_dssp             SCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHHHHHHHTCSSG
T ss_pred             CCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCC-CCCccCCHHHHHHHHHHccCCh
Confidence            999999999999999999999999999999999999999999888888888877653 3345689999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++||+    ++|||+||||+.
T Consensus       266 ~~R~s----~~e~l~hp~~~~  282 (350)
T 4b9d_A          266 RDRPS----VNSILEKGFIAK  282 (350)
T ss_dssp             GGSCC----HHHHHTSHHHHT
T ss_pred             hHCcC----HHHHhcCHHhhc
Confidence            99999    999999999975

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.6e-64  Score=507.16  Aligned_cols=256  Identities=27%  Similarity=0.433  Sum_probs=226.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++.+...   ...+.+.+|+++|+.|+|||||+++++|.+++.
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~----~tg~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~  222 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVR----SSGKLVAVKKMDLRKQ---QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDE  222 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEESTTC---SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEEC----CCCCEEEEEEEeccch---hHHHHHHHHHHHHHhCCCCCCCceEEEEEECCE
Confidence            457999999999999999999987    4899999999976533   334567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|||||||+||+|.++++.   +.+++..++.|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+|+....
T Consensus       223 ~~iVmEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~  299 (423)
T 4fie_A          223 LWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK  299 (423)
T ss_dssp             EEEEEECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCC
Confidence            9999999999999999876   5699999999999999999999999999999999999999999999999999875532


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                      ....+++|
T Consensus       300 ~~----------------------------------------------------------------------~~~~~~~G  309 (423)
T 4fie_A          300 EV----------------------------------------------------------------------PRRKSLVG  309 (423)
T ss_dssp             SC----------------------------------------------------------------------CCBCCCEE
T ss_pred             CC----------------------------------------------------------------------cccccccc
Confidence            11                                                                      11225689


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|||||++.+..|+.++|||||||++|||++|++||.+.+....+..+..... .++....+++++++||.+||..||
T Consensus       310 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP  389 (423)
T 4fie_A          310 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDP  389 (423)
T ss_dssp             CTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSST
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999999888777777766532 334445789999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++||+    ++|||+||||+.
T Consensus       390 ~~R~t----a~ell~Hp~~~~  406 (423)
T 4fie_A          390 AQRAT----AAELLKHPFLAK  406 (423)
T ss_dssp             TTSCC----HHHHTTCGGGGG
T ss_pred             hHCcC----HHHHhcCHHhcC
Confidence            99999    999999999985

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.2e-64  Score=480.89  Aligned_cols=256  Identities=26%  Similarity=0.472  Sum_probs=215.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|++++.||+|+||+||+|+++    .+|+.||||++.+..........++.+|+++|+.++|||||++++++.+++.
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~   87 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHT----TTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDE   87 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECT----TTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCE
Confidence            478999999999999999999876    4889999999988766655667788999999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +||||||| +|+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+||||+.+|.+||+|||+|+....
T Consensus        88 ~~ivmEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  164 (275)
T 3hyh_A           88 IIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD  164 (275)
T ss_dssp             EEEEEECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred             EEEEEeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence            99999999 78998888775  6799999999999999999999999999999999999999999999999999865432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                       ...+.+|
T Consensus       165 ~~-----------------------------------------------------------------------~~~~~~G  173 (275)
T 3hyh_A          165 GN-----------------------------------------------------------------------FLKTSCG  173 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC-----------------------------------------------------------------------ccCCeeE
Confidence            11                                                                       1124579


Q ss_pred             CCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|||||++.+..| +.++|||||||++|||++|+.||.+.+....+..+....+.+|.  .+++++++||.+||+.||
T Consensus       174 T~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~dP  251 (275)
T 3hyh_A          174 SPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK--FLSPGAAGLIKRMLIVNP  251 (275)
T ss_dssp             -CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT--TSCHHHHHHHHHHSCSSG
T ss_pred             CcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHccCCh
Confidence            999999999999886 68999999999999999999999998888888888888777765  489999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++|||    ++|+++||||+.
T Consensus       252 ~~R~s----~~eil~hpw~k~  268 (275)
T 3hyh_A          252 LNRIS----IHEIMQDDWFKV  268 (275)
T ss_dssp             GGSCC----HHHHHHCHHHHT
T ss_pred             hHCcC----HHHHHcCccccc
Confidence            99999    999999999973

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=6.1e-62  Score=511.36  Aligned_cols=286  Identities=31%  Similarity=0.594  Sum_probs=244.6

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH---HHHHcCCCCCceEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE---ILEMLDHPFLPTLY  152 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~---il~~l~H~nIv~l~  152 (457)
                      +..+.+++|+++++||+|+||+||+|+++    .+|+.||||++.+..+...........|..   +++.++|||||+++
T Consensus       183 ~~~~slddf~i~k~LG~G~fG~V~la~~~----~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~  258 (689)
T 3v5w_A          183 NIHLTMNDFSVHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMS  258 (689)
T ss_dssp             TCCCCGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEE
T ss_pred             CCCCchHHeEEEEEEecccCeEEEEEEEC----CCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEE
Confidence            45678899999999999999999999987    489999999999887766555555555654   44556899999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                      ++|.+.+.+|||||||+||+|..++...  +.+++..++.|+.||+.||+|||++|||||||||+||||+.+|.+||+||
T Consensus       259 ~~f~~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DF  336 (689)
T 3v5w_A          259 YAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL  336 (689)
T ss_dssp             EEEECSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCC
T ss_pred             EEEEECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEeccc
Confidence            9999999999999999999999999875  67999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+|+.....                                                                       
T Consensus       337 GlA~~~~~~-----------------------------------------------------------------------  345 (689)
T 3v5w_A          337 GLACDFSKK-----------------------------------------------------------------------  345 (689)
T ss_dssp             TTCEECSSC-----------------------------------------------------------------------
T ss_pred             ceeeecCCC-----------------------------------------------------------------------
Confidence            998654321                                                                       


Q ss_pred             cccccccCCCCccCchhhc-CCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          313 VRSMSFVGTHEYLAPEIIS-GEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~-~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                       ...+++||+.|||||++. +..|+.++|||||||+||||++|++||.+..   ...+...+......+|.  .++++++
T Consensus       346 -~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~--~~S~~a~  422 (689)
T 3v5w_A          346 -KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD--SFSPELR  422 (689)
T ss_dssp             -CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCT--TSCHHHH
T ss_pred             -CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCc--cCCHHHH
Confidence             112468999999999996 4679999999999999999999999997643   23445556666666654  4999999


Q ss_pred             HHHHHHhhhCCCCCCCC-CcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcc
Q 012762          389 DLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCR  441 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~-~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~  441 (457)
                      +||.+||+.||.+|++. ...++||++||||+++||..+  +...|||+|......
T Consensus       423 dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~~~~~~  478 (689)
T 3v5w_A          423 SLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVN  478 (689)
T ss_dssp             HHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCCTTCSS
T ss_pred             HHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccCCCCCCC
Confidence            99999999999999985 245799999999999999987  567899999765443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-61  Score=466.90  Aligned_cols=253  Identities=23%  Similarity=0.396  Sum_probs=214.0

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----CC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----PR  159 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----~~  159 (457)
                      |++.++||+|+||+||+|.++    .+++.||+|++.+.... .....++.+|+++|++|+|||||+++++|.+    ++
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~  102 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKK  102 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEE
T ss_pred             EEeeeEEecCcCcEEEEEEEC----CCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCc
Confidence            478889999999999999987    47899999999876543 3345778899999999999999999999865    35


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEcc-CCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRS-DGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~-~~~vkl~DFG~s~  236 (457)
                      .+|||||||+||+|.+++...  +.+++..++.|+.||+.||+|||++|  ||||||||+||||+. +|.+||+|||+|+
T Consensus       103 ~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~  180 (290)
T 3fpq_A          103 CIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence            689999999999999999875  67999999999999999999999998  999999999999984 7899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                        ...
T Consensus       181 ~~~~~------------------------------------------------------------------------~~~  188 (290)
T 3fpq_A          181 LKRAS------------------------------------------------------------------------FAK  188 (290)
T ss_dssp             GCCTT------------------------------------------------------------------------SBE
T ss_pred             eCCCC------------------------------------------------------------------------ccC
Confidence            43211                                                                        112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L  395 (457)
                      +++||+.|||||++.+ .|+.++|||||||+||||++|+.||.+......+...+..... ...+..+++++++||.+||
T Consensus       189 ~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L  267 (290)
T 3fpq_A          189 AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCI  267 (290)
T ss_dssp             ESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHS
T ss_pred             CcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHc
Confidence            4579999999999976 5999999999999999999999999876655444444433322 2233457889999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.||++|||    ++|||+||||+.
T Consensus       268 ~~dP~~R~s----~~e~l~Hp~~~~  288 (290)
T 3fpq_A          268 RQNKDERYS----IKDLLNHAFFQE  288 (290)
T ss_dssp             CSSGGGSCC----HHHHHTSGGGC-
T ss_pred             cCChhHCcC----HHHHhcCccccC
Confidence            999999999    999999999984

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.1e-61  Score=475.18  Aligned_cols=259  Identities=22%  Similarity=0.319  Sum_probs=220.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.++||+|+||+||+|+++    .+|+.||||++++...        ..+|+++|+.|+|||||++++++.+++
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~----~~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~~~  123 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDK----QTGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVREGP  123 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEETT
T ss_pred             chhheEeCcEeccCCCeEEEEEEEC----CCCCEEEEEEECHHHh--------HHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            4568999999999999999999987    4899999999976532        235999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCCcCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLSLKG  238 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s~~~  238 (457)
                      .+|||||||+||+|.++++..  +.+++..++.++.||+.||+|||++|||||||||+||||+.+| .+||+|||+|+..
T Consensus       124 ~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~  201 (336)
T 4g3f_A          124 WVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCL  201 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC
T ss_pred             EEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEc
Confidence            999999999999999999875  6799999999999999999999999999999999999999988 6999999999765


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ........                                                                 ......+
T Consensus       202 ~~~~~~~~-----------------------------------------------------------------~~~~~~~  216 (336)
T 4g3f_A          202 QPDGLGKS-----------------------------------------------------------------LLTGDYI  216 (336)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             cCCCcccc-----------------------------------------------------------------eecCCcc
Confidence            43211100                                                                 0011245


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC-CCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP-KEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~L~~  397 (457)
                      +||+.|||||++.+..|+.++|||||||++|||++|+.||.+......+.++......+. .++.+++++.+||.+||+.
T Consensus       217 ~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~  296 (336)
T 4g3f_A          217 PGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRK  296 (336)
T ss_dssp             CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCS
T ss_pred             ccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccC
Confidence            799999999999999999999999999999999999999998877777777777654432 3456899999999999999


Q ss_pred             CCCCCCCCCcChHHH-------------hcCCCCCCC
Q 012762          398 DPTRRMGSKMGATAI-------------KRHQFFNGV  421 (457)
Q Consensus       398 dP~~Rps~~~~~~~l-------------l~hp~f~~~  421 (457)
                      ||.+|||    +.||             |+|||+...
T Consensus       297 dP~~R~s----a~el~~~l~~~l~~~~~l~hPw~~~~  329 (336)
T 4g3f_A          297 EPVHRAS----AMELRRKVGKALQEVGGLKSPWKGEY  329 (336)
T ss_dssp             SGGGSCC----HHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred             CHhHCcC----HHHHHHHHHHHHhhhhhccCCCcCCC
Confidence            9999999    8887             568887653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-59  Score=471.76  Aligned_cols=264  Identities=22%  Similarity=0.310  Sum_probs=221.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----  157 (457)
                      ++|+++++||+|+||+||+|+++    .+|+.||||++++... ......++.+|+++|+.|+|||||++++++..    
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~----~t~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~  128 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRR----LTGQQVAIKKIPNAFD-VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPY  128 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEETTTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCT
T ss_pred             CCeEEEEEEecccCeEEEEEEEC----CCCCEEEEEEECcccc-chHHHHHHHHHHHHHHhcCCCCcceEeeeeeccccc
Confidence            57999999999999999999987    4899999999976532 23345677889999999999999999998754    


Q ss_pred             --CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          158 --PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       158 --~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                        .+.+|||||||+ |+|..++...  +.+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||++
T Consensus       129 ~~~~~~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          129 GEFKSVYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             TTCCCEEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ccCCEEEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeeccee
Confidence              367899999994 7798888764  78999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +........                                                                  .....
T Consensus       206 ~~~~~~~~~------------------------------------------------------------------~~~~~  219 (398)
T 4b99_A          206 RGLCTSPAE------------------------------------------------------------------HQYFM  219 (398)
T ss_dssp             BCC-------------------------------------------------------------------------CCCC
T ss_pred             eecccCccc------------------------------------------------------------------ccccc
Confidence            765321110                                                                  01122


Q ss_pred             ccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---------------
Q 012762          316 MSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---------------  379 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---------------  379 (457)
                      .+++||+.|||||++.+.. |+.++||||+||++|||++|++||.+.+..+.+..++......+.               
T Consensus       220 ~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~  299 (398)
T 4b99_A          220 TEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYI  299 (398)
T ss_dssp             CSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHH
T ss_pred             ccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhh
Confidence            3568999999999998864 699999999999999999999999998888887777654332221               


Q ss_pred             --------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          380 --------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       380 --------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                    .+.+++++++||.+||..||++|||    ++|+|+||||+....
T Consensus       300 ~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          300 QSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARIS----AAAALRHPFLAKYHD  353 (398)
T ss_dssp             HSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCC----HHHHTTSGGGTTTCC
T ss_pred             hcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcC----HHHHhcCHhhCcCCC
Confidence                          1246789999999999999999999    999999999997654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4e-60  Score=459.68  Aligned_cols=270  Identities=25%  Similarity=0.410  Sum_probs=201.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      ++|++++.||+|+||+||+|+++    .+|+.||||+++...  .....+.+.+|+++|++|+|||||+++++|.+.+  
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~----~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~   78 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNK----VDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTT   78 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEET----TTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--
T ss_pred             hhCEEeeEEecCCCeEEEEEEEC----CCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcc
Confidence            47999999999999999999987    478999999997542  2334567889999999999999999999987544  


Q ss_pred             ----------cEEEEEeecCCCChHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          160 ----------WSCLLTEFCPGGDLHVLRQRQPD-KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       160 ----------~~~lV~E~~~~~sL~~~~~~~~~-~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                                ++|||||||+||+|.+++..... ....+..++.++.||+.||+|||++|||||||||+||||+.+|.+|
T Consensus        79 ~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vK  158 (299)
T 4g31_A           79 EKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK  158 (299)
T ss_dssp             --------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEE
T ss_pred             ccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEE
Confidence                      47999999999999999976422 2345677899999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+|+............                                                          ..
T Consensus       159 l~DFGla~~~~~~~~~~~~~----------------------------------------------------------~~  180 (299)
T 4g31_A          159 VGDFGLVTAMDQDEEEQTVL----------------------------------------------------------TP  180 (299)
T ss_dssp             ECCCCCC-------------------------------------------------------------------------
T ss_pred             EccCccceecCCCccccccc----------------------------------------------------------cc
Confidence            99999997765322111000                                                          00


Q ss_pred             cCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCCCC-CCCCChH
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFPK-EPSVPGP  386 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~  386 (457)
                      .+...+..+.+||+.|||||++.+..|+.++|||||||++|||++   ||.+..+.. .+..+..  ..+|. ....++.
T Consensus       181 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~~--~~~p~~~~~~~~~  255 (299)
T 4g31_A          181 MPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRN--LKFPPLFTQKYPC  255 (299)
T ss_dssp             -----------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHT--TCCCHHHHHHCHH
T ss_pred             cccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHhc--CCCCCCCcccCHH
Confidence            001122335689999999999999999999999999999999996   886533222 2222222  22221 1224566


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      +.+||.+||+.||++||+    +.|||+||||++++|.
T Consensus       256 ~~~li~~~L~~dP~~Rps----~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          256 EYVMVQDMLSPSPMERPE----AINIIENAVFEDLDFP  289 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCC----HHHHHTSGGGCCC---
T ss_pred             HHHHHHHHcCCChhHCcC----HHHHhcCHhhCCCCCC
Confidence            889999999999999999    9999999999999984

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=9.6e-59  Score=455.44  Aligned_cols=263  Identities=18%  Similarity=0.306  Sum_probs=218.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+..++|.+.++||+|+||+||+|+++.. +..+++.||||+++..   .....+.+.+|+++|++|+|||||++++++
T Consensus        36 ~~i~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~  112 (329)
T 4aoj_A           36 HHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVC  112 (329)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cccCHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            456678999999999999999999998642 3346889999999753   234557789999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP-------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~-------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      .+++.+|||||||++|+|.++++...             .+.+++.+++.|+.||+.||.|||+++||||||||+||||+
T Consensus       113 ~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~  192 (329)
T 4aoj_A          113 TEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVG  192 (329)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEEC
Confidence            99999999999999999999987642             24699999999999999999999999999999999999999


Q ss_pred             cCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCC
Q 012762          223 SDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG  302 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (457)
                      .++.+||+|||+++.........                                                         
T Consensus       193 ~~~~~Ki~DFGla~~~~~~~~~~---------------------------------------------------------  215 (329)
T 4aoj_A          193 QGLVVKIGDFGMSRDIYSTDYYR---------------------------------------------------------  215 (329)
T ss_dssp             TTTEEEECCCC---------------------------------------------------------------------
T ss_pred             CCCcEEEcccccceeccCCCcce---------------------------------------------------------
Confidence            99999999999987553211100                                                         


Q ss_pred             CCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCC
Q 012762          303 TPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEP  381 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~  381 (457)
                                 .....+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+.+..+.+..+..+ .+++.+.
T Consensus       216 -----------~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g-~~~~~p~  283 (329)
T 4aoj_A          216 -----------VGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG-RELERPR  283 (329)
T ss_dssp             ---------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT-CCCCCCT
T ss_pred             -----------ecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC-CCCCCcc
Confidence                       0113469999999999999999999999999999999998 99999998887777776654 3455556


Q ss_pred             CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       382 ~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+++++.+||.+||+.||++||+    +.||+++
T Consensus       284 ~~~~~~~~li~~cl~~dP~~RPs----~~ei~~~  313 (329)
T 4aoj_A          284 ACPPEVYAIMRGCWQREPQQRHS----IKDVHAR  313 (329)
T ss_dssp             TCCHHHHHHHHHHCCSSTTTSCC----HHHHHHH
T ss_pred             cccHHHHHHHHHHcCcChhHCcC----HHHHHHH
Confidence            79999999999999999999999    8888764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=7.8e-59  Score=450.11  Aligned_cols=265  Identities=18%  Similarity=0.319  Sum_probs=221.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+..++|.+.++||+|+||+||+|+++.. ...+++.||||+++..   .....+.+.+|+++|++|+|||||++++++
T Consensus         8 ~~I~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~   84 (299)
T 4asz_A            8 QHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVC   84 (299)
T ss_dssp             CBCCGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cccCHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEE
Confidence            346678999999999999999999997632 2346789999999753   234567789999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQ-----------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~-----------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~  224 (457)
                      .+++.+|||||||++|+|.++++..           ....+++..++.++.||+.||.|||+++||||||||+||||+.+
T Consensus        85 ~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~  164 (299)
T 4asz_A           85 VEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGEN  164 (299)
T ss_dssp             CSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred             eeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCC
Confidence            9999999999999999999999763           23579999999999999999999999999999999999999999


Q ss_pred             CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       225 ~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                      +.+||+|||+|+........                                                            
T Consensus       165 ~~~Ki~DFGla~~~~~~~~~------------------------------------------------------------  184 (299)
T 4asz_A          165 LLVKIGDFGMSRDVYSTDYY------------------------------------------------------------  184 (299)
T ss_dssp             GCEEECCCSCHHHHTGGGCE------------------------------------------------------------
T ss_pred             CcEEECCcccceecCCCCce------------------------------------------------------------
Confidence            99999999998654321110                                                            


Q ss_pred             cccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCC
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSV  383 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  383 (457)
                              .......||+.|||||++.+..|+.++|||||||+||||+| |+.||.+.+..+.+..+..+. ..+.+..+
T Consensus       185 --------~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~-~~~~p~~~  255 (299)
T 4asz_A          185 --------RVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGR-VLQRPRTC  255 (299)
T ss_dssp             --------EETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTC-CCCCCTTC
T ss_pred             --------eecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-CCCCCccc
Confidence                    00112469999999999999999999999999999999998 999999988888777776654 34445569


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      |+++.+||.+||+.||++||+    +.+|.  +|++
T Consensus       256 ~~~~~~li~~cl~~dP~~RPs----~~~i~--~~L~  285 (299)
T 4asz_A          256 PQEVYELMLGCWQREPHMRKN----IKGIH--TLLQ  285 (299)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCC----HHHHH--HHHH
T ss_pred             hHHHHHHHHHHcCCChhHCcC----HHHHH--HHHH
Confidence            999999999999999999999    88884  3444

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-58  Score=445.68  Aligned_cols=257  Identities=21%  Similarity=0.314  Sum_probs=213.2

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..|++..+++++.++||+|+||+||+|+++       ..||||+++.... .....+.+.+|+++|++++|||||+++++
T Consensus        29 ~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~-------~~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~  100 (307)
T 3omv_A           29 YYWEIEASEVMLSTRIGSGSFGTVYKGKWH-------GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGY  100 (307)
T ss_dssp             CCCBCCTTSCCEEEECCCCSSSEEEEEESS-------SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             cCcEEcHHHeEEeeEEeeCCCcEEEEEEEC-------CcEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            457899999999999999999999999864       2599999875432 23456778999999999999999999998


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.. +.+|||||||+||+|.+++... ...+++..+..++.||+.||+|||+++||||||||+||||+.++.+||+|||+
T Consensus       101 ~~~-~~~~iVmEy~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGl  178 (307)
T 3omv_A          101 MTK-DNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGL  178 (307)
T ss_dssp             ECS-SSCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSS
T ss_pred             EEC-CeEEEEEEcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccC
Confidence            865 5689999999999999998764 35799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      |+........                                                                    ..
T Consensus       179 a~~~~~~~~~--------------------------------------------------------------------~~  190 (307)
T 3omv_A          179 ATVKSRWSGS--------------------------------------------------------------------QQ  190 (307)
T ss_dssp             CBC-----------------------------------------------------------------------------
T ss_pred             ceecccCCcc--------------------------------------------------------------------ee
Confidence            8755321110                                                                    11


Q ss_pred             cccccCCCCccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC----CCCCChHH
Q 012762          315 SMSFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK----EPSVPGPA  387 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  387 (457)
                      ..+.+||+.|||||++.+.   .|+.++|||||||+||||+||+.||.+......+..++......|.    ...+++++
T Consensus       191 ~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l  270 (307)
T 3omv_A          191 VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAM  270 (307)
T ss_dssp             ---CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHH
T ss_pred             ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHH
Confidence            1245799999999999753   5899999999999999999999999988777666666666554442    34578999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHh
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll  413 (457)
                      .+||.+||+.||++|||    +.||+
T Consensus       271 ~~li~~cl~~dP~~RPs----~~ei~  292 (307)
T 3omv_A          271 KRLVADCVKKVKEERPL----FPQIL  292 (307)
T ss_dssp             HHHHHHHTCSSSTTSCC----HHHHH
T ss_pred             HHHHHHHcCCCHhHCcC----HHHHH
Confidence            99999999999999999    66654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=5.2e-58  Score=456.39  Aligned_cols=284  Identities=20%  Similarity=0.294  Sum_probs=212.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      ++|++.++||+|+||+||+|+++. +..+++.||+|++.+.     ....++.+|+++|+.+ +|||||+++++|.+.++
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~-~~~~~~~vAiK~i~~~-----~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQL-QVGPEEKIALKHLIPT-----SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEB-TTSCEEEEEEEEECTT-----SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             CcEEEEEEEecccCcEEEEEEEcc-cCCCCCEEEEEEEccc-----cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            579999999999999999998763 2346789999998654     2345677899999998 69999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCCCcCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDLSLKGD  239 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~s~~~~  239 (457)
                      +|||||||+||+|.++++     .+++.+++.++.||+.||+|||++|||||||||+|||++.+ +.+||+|||+|+...
T Consensus        95 ~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             EEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             EEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            999999999999998873     48999999999999999999999999999999999999877 899999999997665


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      +.............                 ....+..                         ..............+.+
T Consensus       170 ~~~~~~~~~~~~~~-----------------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~  207 (361)
T 4f9c_A          170 DTKIELLKFVQSEA-----------------QQERCSQ-------------------------NKCSICLSRRQQVAPRA  207 (361)
T ss_dssp             TCSCGGGGGC--------------------------------------------------------------------CC
T ss_pred             Cccccccccccccc-----------------ccccccc-------------------------ccccccccccccccccc
Confidence            43221110000000                 0000000                         00000001122334568


Q ss_pred             CCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhcc-----------------------
Q 012762          320 GTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARA-----------------------  374 (457)
Q Consensus       320 gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~-----------------------  374 (457)
                      ||+.|||||++.+.. |+.++||||+||++|||++|+.||....+ .+.+..+....                       
T Consensus       208 GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p  287 (361)
T 4f9c_A          208 GTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVP  287 (361)
T ss_dssp             CCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCC
T ss_pred             cCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCc
Confidence            999999999998864 89999999999999999999999965543 33333332100                       


Q ss_pred             -----------------------------cCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          375 -----------------------------LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       375 -----------------------------~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                                                   ........++++++|||.+||+.||++|+|    ++|+|+||||++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~t----a~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          288 AQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRIT----AEEALLHPFFKDMS  360 (361)
T ss_dssp             CCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCC----HHHHHTSGGGTTC-
T ss_pred             chhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcCcccCCCC
Confidence                                         011123457889999999999999999999    99999999999865

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.6e-58  Score=448.26  Aligned_cols=265  Identities=20%  Similarity=0.304  Sum_probs=221.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..++..++++++++||+|+||+||+|++... +..+++.||||+++...  .....+.+.+|+++|++|+|||||+++++
T Consensus        20 ~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~   97 (308)
T 4gt4_A           20 LKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA--EGPLREEFRHEAMLRARLQHPNVVCLLGV   97 (308)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C--CC-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccCCHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc--ChHHHHHHHHHHHHHHhCCCCCCCCcceE
Confidence            3467788999999999999999999997532 23467899999997542  23345778999999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeE
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL  220 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIl  220 (457)
                      +..++.+|||||||++|+|.+++....              ...+++..+..++.||+.||+|||+++||||||||+|||
T Consensus        98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NIL  177 (308)
T 4gt4_A           98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVL  177 (308)
T ss_dssp             ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceE
Confidence            999999999999999999999986532              245899999999999999999999999999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                      |+.++.+||+|||+++........                                                        
T Consensus       178 l~~~~~~Ki~DFGlar~~~~~~~~--------------------------------------------------------  201 (308)
T 4gt4_A          178 VYDKLNVKISDLGLFREVYAADYY--------------------------------------------------------  201 (308)
T ss_dssp             ECGGGCEEECCSCCBCGGGGGGCB--------------------------------------------------------
T ss_pred             ECCCCCEEECCcccceeccCCCce--------------------------------------------------------
Confidence            999999999999998654311100                                                        


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCC
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                  ......+||+.|||||++.+..|+.++|||||||+||||+| |..||.+.+..+....+..+ ...+.
T Consensus       202 ------------~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~-~~~~~  268 (308)
T 4gt4_A          202 ------------KLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR-QVLPC  268 (308)
T ss_dssp             ------------CSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTT-CCCCC
T ss_pred             ------------eEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCCCC
Confidence                        01113469999999999999999999999999999999998 89999998887777766554 44555


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +..+|.++.+||.+||+.||++||+    +.||+++
T Consensus       269 p~~~~~~~~~li~~C~~~dP~~RPs----~~ei~~~  300 (308)
T 4gt4_A          269 PDDCPAWVYALMIECWNEFPSRRPR----FKDIHSR  300 (308)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             cccchHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            6679999999999999999999999    8888764

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.3e-57  Score=453.27  Aligned_cols=290  Identities=37%  Similarity=0.721  Sum_probs=249.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      ..+..++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+..|+++|+.+ +||||+++++++
T Consensus        18 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~   93 (353)
T 3txo_A           18 NRLGIDNFEFIRVLGKGSFGKVMLARVK----ETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF   93 (353)
T ss_dssp             -----CCEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             CCCchhheEEEEEEeeCCCEEEEEEEEc----CCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE
Confidence            4567789999999999999999999987    47899999999987666666777888899999988 799999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+.+.+|||||||+||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+||||+.+|.+||+|||++
T Consensus        94 ~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a  171 (353)
T 3txo_A           94 QTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC  171 (353)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccce
Confidence            9999999999999999999888775  67999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.....                                                                      ....
T Consensus       172 ~~~~~~----------------------------------------------------------------------~~~~  181 (353)
T 3txo_A          172 KEGICN----------------------------------------------------------------------GVTT  181 (353)
T ss_dssp             BCSCC---------------------------------------------------------------------------
T ss_pred             eecccC----------------------------------------------------------------------Cccc
Confidence            643211                                                                      0112


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+.+..++.....+|..  ++.++.+||.+||
T Consensus       182 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~--~~~~~~~li~~lL  259 (353)
T 3txo_A          182 ATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTW--LHEDATGILKSFM  259 (353)
T ss_dssp             ----CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT--SCHHHHHHHHHHT
T ss_pred             cccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHHh
Confidence            24579999999999999899999999999999999999999999999889999999888777754  8999999999999


Q ss_pred             hhCCCCCCCC--CcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          396 VKDPTRRMGS--KMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       396 ~~dP~~Rps~--~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      ..||++||+.  ...+++|++||||++++|..+  +...|||+|+.....|.+
T Consensus       260 ~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~~~~~~~~~  312 (353)
T 3txo_A          260 TKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSREDVS  312 (353)
T ss_dssp             CSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTCCT
T ss_pred             hhCHHHccCCcccCCHHHHhhCCcccCCCHHHHhcCcCCCCccCCCCCccccc
Confidence            9999999993  122389999999999999877  567899999877666554

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7.4e-57  Score=445.05  Aligned_cols=288  Identities=35%  Similarity=0.704  Sum_probs=251.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++++.||+|+||+||+|+++    .+|+.||+|++.+...........+..|+++|+.++||||+++++++...
T Consensus         2 ~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~   77 (337)
T 1o6l_A            2 VTMNDFDYLKLLGKGTFGKVILVREK----ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH   77 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS
T ss_pred             CChHHeEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC
Confidence            45679999999999999999999986    47899999999887665666677888899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +.+|+||||++||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        78 ~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  155 (337)
T 1o6l_A           78 DRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             CEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence            9999999999999999888765  67999999999999999999999999999999999999999999999999998643


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                      ....++
T Consensus       156 ~~~~----------------------------------------------------------------------~~~~~~  165 (337)
T 1o6l_A          156 ISDG----------------------------------------------------------------------ATMKTF  165 (337)
T ss_dssp             CCTT----------------------------------------------------------------------CCBCCC
T ss_pred             ccCC----------------------------------------------------------------------Cccccc
Confidence            2110                                                                      011245


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      +||+.|+|||++.+..++.++|||||||++|||++|..||.+.+.......+......+|.  .+++++++||.+||+.|
T Consensus       166 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~lL~~d  243 (337)
T 1o6l_A          166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLKKD  243 (337)
T ss_dssp             EECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTCSS
T ss_pred             ccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhhcC
Confidence            7999999999999999999999999999999999999999998888888888887777765  48999999999999999


Q ss_pred             CCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          399 PTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       399 P~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      |++||+.. ..++||++||||++++|..+  +...|||+|......|.+
T Consensus       244 P~~R~g~~~~~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~~~~~~d~~  292 (337)
T 1o6l_A          244 PKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTR  292 (337)
T ss_dssp             TTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTTCCT
T ss_pred             HHHhcCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCCCCCCCCcchhh
Confidence            99999211 11999999999999999877  457799999876665543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1.9e-57  Score=478.36  Aligned_cols=263  Identities=27%  Similarity=0.420  Sum_probs=233.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|+++++||+|+||+||+|+++    .+|+.||+|++.+...   .....+.+|+++|+.|+|||||+++++|.+++
T Consensus       155 il~~Y~i~~~lG~G~fg~V~~~~~~----~tg~~~AiK~i~~~~~---~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~  227 (573)
T 3uto_A          155 VLDHYDIHEELGTGAFGVVHRVTER----ATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN  227 (573)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSS
T ss_pred             CccccEEEEEEeeccCeEEEEEEEC----CCCCEEEEEEEeccch---hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            4578999999999999999999987    4899999999976532   34566788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC--CCEEEeccCCCcC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD--GHIMLTDFDLSLK  237 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~--~~vkl~DFG~s~~  237 (457)
                      .+|||||||+||+|.+++... .+.+++..++.++.||+.||+|||++||+||||||+|||++.+  +.+||+|||+++.
T Consensus       228 ~~~iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~  306 (573)
T 3uto_A          228 EMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH  306 (573)
T ss_dssp             EEEEEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred             EEEEEEeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence            999999999999999888643 3579999999999999999999999999999999999999854  8999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                       ..+
T Consensus       307 ~~~~~~-----------------------------------------------------------------------~~~  315 (573)
T 3uto_A          307 LDPKQS-----------------------------------------------------------------------VKV  315 (573)
T ss_dssp             CCTTSE-----------------------------------------------------------------------EEE
T ss_pred             ccCCCc-----------------------------------------------------------------------eee
Confidence            542211                                                                       124


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L  395 (457)
                      .+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.++....+.++.  ...+++++++||.+||
T Consensus       316 ~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L  395 (573)
T 3uto_A          316 TTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLL  395 (573)
T ss_dssp             ECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTS
T ss_pred             eEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHc
Confidence            57999999999999999999999999999999999999999999988888888887776654  3568999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      +.||++||+    +.|+|+||||+..+|..
T Consensus       396 ~~dp~~R~t----~~e~l~Hpw~~~~~~~~  421 (573)
T 3uto_A          396 LADPNTRMT----IHQALEHPWLTPGNAPG  421 (573)
T ss_dssp             CSSGGGSCC----HHHHHHSTTTSCCCCTT
T ss_pred             cCChhHCcC----HHHHhcCcCcCCCCCCC
Confidence            999999999    99999999999988753

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.5e-57  Score=449.00  Aligned_cols=266  Identities=18%  Similarity=0.269  Sum_probs=225.2

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC-CCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH-PFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H-~nIv~l~~  153 (457)
                      .|++..++|++.++||+|+||+||+|.++..+ ...++.||||++....  .......+.+|+++|++++| ||||++++
T Consensus        58 ~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~--~~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           58 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--ChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            46788899999999999999999999987543 3355789999997643  23345678899999999965 89999999


Q ss_pred             EEEc-CCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCC
Q 012762          154 TLDC-PRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN  218 (457)
Q Consensus       154 ~~~~-~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~N  218 (457)
                      +|.. ++.+|||||||++|+|.++++...              ...+++..+..++.||+.||+|||+++||||||||+|
T Consensus       136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~N  215 (353)
T 4ase_A          136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARN  215 (353)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccc
Confidence            9865 457899999999999999997632              2458999999999999999999999999999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      |||+.++.+||+|||+|+........                                                      
T Consensus       216 ILl~~~~~vKi~DFGlar~~~~~~~~------------------------------------------------------  241 (353)
T 4ase_A          216 ILLSEKNVVKICDFGLARDIYKDPDY------------------------------------------------------  241 (353)
T ss_dssp             EEECGGGCEEECCCGGGSCTTTCTTS------------------------------------------------------
T ss_pred             eeeCCCCCEEECcchhhhhcccCCCc------------------------------------------------------
Confidence            99999999999999999765322110                                                      


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCC
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEF  377 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~  377 (457)
                                    ....+.+||+.|||||++.+..|+.++|||||||+||||+| |+.||.+......+..++....++
T Consensus       242 --------------~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~  307 (353)
T 4ase_A          242 --------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM  307 (353)
T ss_dssp             --------------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCC
T ss_pred             --------------eeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence                          11123579999999999999999999999999999999998 999999877666666666666666


Q ss_pred             CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       378 ~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.+..+++++.+||.+||+.||++|||    +.||++|
T Consensus       308 ~~p~~~~~~~~~li~~c~~~dP~~RPt----~~eil~~  341 (353)
T 4ase_A          308 RAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  341 (353)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHcCcChhHCcC----HHHHHHH
Confidence            666779999999999999999999999    9999887

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.9e-56  Score=450.67  Aligned_cols=292  Identities=34%  Similarity=0.659  Sum_probs=245.5

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      ..+..++|+++++||+|+||+||+|+++    .+++.||+|++++...........+..|+.+|+++ +||||+++++++
T Consensus        47 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~----~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~  122 (396)
T 4dc2_A           47 SSLGLQDFDLLRVIGRGSYAKVLLVRLK----KTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF  122 (396)
T ss_dssp             --CCGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             cCCChhHcEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE
Confidence            3466789999999999999999999987    47899999999887655555556678899999887 899999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+.+|||||||+||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||++
T Consensus       123 ~~~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla  200 (396)
T 4dc2_A          123 QTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC  200 (396)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred             EECCEEEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeeccee
Confidence            9999999999999999999888775  67999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.....                                                                      ....
T Consensus       201 ~~~~~~----------------------------------------------------------------------~~~~  210 (396)
T 4dc2_A          201 KEGLRP----------------------------------------------------------------------GDTT  210 (396)
T ss_dssp             BCCCCT----------------------------------------------------------------------TCCB
T ss_pred             eecccC----------------------------------------------------------------------CCcc
Confidence            642211                                                                      0112


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC---------ChHHHHHHHHhcccCCCCCCCCChH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI---------DHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      .+++||+.|+|||++.+..|+.++|||||||++|||++|+.||...         ........+......+|..  ++.+
T Consensus       211 ~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~--~s~~  288 (396)
T 4dc2_A          211 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRS--LSVK  288 (396)
T ss_dssp             CCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTT--SCHH
T ss_pred             ccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCc--CCHH
Confidence            2457999999999999999999999999999999999999999643         2233556666666666654  8999


Q ss_pred             HHHHHHHHhhhCCCCCCCCC--cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccc
Q 012762          387 AKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~--~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  446 (457)
                      +++||.+||+.||.+||+..  ..++||++||||++++|..+  +...|||+|......|.+.-
T Consensus       289 ~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~~~~~d~~~f  352 (396)
T 4dc2_A          289 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNF  352 (396)
T ss_dssp             HHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCCCSSTTGGGS
T ss_pred             HHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCCCCccchhhc
Confidence            99999999999999999942  22589999999999999987  45779999988776665443

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.6e-56  Score=443.80  Aligned_cols=287  Identities=32%  Similarity=0.652  Sum_probs=249.9

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      ...+..++|++++.||+|+||+||+|+++    .+++.||+|++++...........+..|+++|..+ +||||++++++
T Consensus        14 ~~~~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~   89 (353)
T 2i0e_A           14 RDRMKLTDFNFLMVLGKGSFGKVMLSERK----GTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC   89 (353)
T ss_dssp             -----CTTEEEEEEEEEETTEEEEEEEET----TEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEE
T ss_pred             cCCCchHHcEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEE
Confidence            34567889999999999999999999986    47889999999987665666677788899999887 89999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+.+||||||++||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+
T Consensus        90 ~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~  167 (353)
T 2i0e_A           90 FQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM  167 (353)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEcCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCc
Confidence            99999999999999999999988765  5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++......                                                                      ..
T Consensus       168 a~~~~~~~----------------------------------------------------------------------~~  177 (353)
T 2i0e_A          168 CKENIWDG----------------------------------------------------------------------VT  177 (353)
T ss_dssp             CBCCCCTT----------------------------------------------------------------------CC
T ss_pred             ccccccCC----------------------------------------------------------------------cc
Confidence            86432110                                                                      01


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ..+++||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+....+..++.....+|.  .++.++++||.+|
T Consensus       178 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~l  255 (353)
T 2i0e_A          178 TKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK--SMSKEAVAICKGL  255 (353)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHH
T ss_pred             cccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHH
Confidence            12457999999999999999999999999999999999999999998888888888888777765  4899999999999


Q ss_pred             hhhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCc
Q 012762          395 LVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTC  440 (457)
Q Consensus       395 L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~  440 (457)
                      |..||.+||+.. ..+++|++||||++++|..+  +...|||+|.....
T Consensus       256 L~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~~~~~  304 (353)
T 2i0e_A          256 MTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKACGR  304 (353)
T ss_dssp             TCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCCC
T ss_pred             hhcCHHHcCCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCcCCCCCCc
Confidence            999999999742 23799999999999999987  56789999987554

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=5.2e-56  Score=435.63  Aligned_cols=279  Identities=34%  Similarity=0.690  Sum_probs=247.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +.+++|++++.||+|+||+||+|+++    .+|+.||+|++.+...........+..|+.+|+.++||||+++++++.+.
T Consensus         3 ~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~   78 (318)
T 1fot_A            3 YSLQDFQILRTLGTGSFGRVHLIRSR----HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA   78 (318)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS
T ss_pred             CChHHcEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC
Confidence            45679999999999999999999986    47899999999887665555667788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +.+|+||||++||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++..
T Consensus        79 ~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~  156 (318)
T 1fot_A           79 QQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYV  156 (318)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             CEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceec
Confidence            9999999999999999999875  67999999999999999999999999999999999999999999999999998643


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ...                                                                         ..+.
T Consensus       157 ~~~-------------------------------------------------------------------------~~~~  163 (318)
T 1fot_A          157 PDV-------------------------------------------------------------------------TYTL  163 (318)
T ss_dssp             SSC-------------------------------------------------------------------------BCCC
T ss_pred             CCc-------------------------------------------------------------------------cccc
Confidence            211                                                                         1134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      +||+.|+|||++.+..++.++|||||||++|||++|..||.+.+....+..++.....+|.  .++.++++||.+||..|
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL~~d  241 (318)
T 1fot_A          164 CGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP--FFNEDVKDLLSRLITRD  241 (318)
T ss_dssp             CSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTCSC
T ss_pred             cCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHhccC
Confidence            6999999999999999999999999999999999999999998888888888888777664  48999999999999999


Q ss_pred             CCCCCCCCc-ChHHHhcCCCCCCCCchhh--hccCCCCCCCCC
Q 012762          399 PTRRMGSKM-GATAIKRHQFFNGVNWALL--RCAKPPFIPRPV  438 (457)
Q Consensus       399 P~~Rps~~~-~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~  438 (457)
                      |++|++... .+++|++||||++++|..+  +...|||.|...
T Consensus       242 p~~R~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~p~~p~~~  284 (318)
T 1fot_A          242 LSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQ  284 (318)
T ss_dssp             TTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC-
T ss_pred             HHHcCCCcCCCHHHHhcCccccCCCHHHHHhCCCCCCCCCCcC
Confidence            999993211 2999999999999999877  456789998765

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=3.4e-56  Score=441.61  Aligned_cols=283  Identities=33%  Similarity=0.695  Sum_probs=240.1

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      .+..++|++.+.||+|+||+||+|+++    .+|+.||+|++++...........+..|+++|+.+ +||||+++++++.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~   88 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFK----KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQ   88 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Confidence            466789999999999999999999987    47899999999987665556667788899999887 9999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +.+.+|+||||++||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        89 ~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~  166 (345)
T 1xjd_A           89 TKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCK  166 (345)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence            999999999999999999988775  579999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                      ....
T Consensus       167 ~~~~~~----------------------------------------------------------------------~~~~  176 (345)
T 1xjd_A          167 ENMLGD----------------------------------------------------------------------AKTN  176 (345)
T ss_dssp             CCCCTT----------------------------------------------------------------------CCBC
T ss_pred             hcccCC----------------------------------------------------------------------Cccc
Confidence            432110                                                                      0112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      +++||+.|+|||++.+..|+.++|||||||++|||++|..||.+.+....+..+......++.  .++.++++||.+||.
T Consensus       177 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~lL~  254 (345)
T 1xjd_A          177 TFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR--WLEKEAKDLLVKLFV  254 (345)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHSC
T ss_pred             CCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCc--ccCHHHHHHHHHHhc
Confidence            457999999999999999999999999999999999999999998888888888877766664  489999999999999


Q ss_pred             hCCCCCCCCCcChH-HHhcCCCCCCCCchhh--hccCCCCCCCCCCccc
Q 012762          397 KDPTRRMGSKMGAT-AIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRD  442 (457)
Q Consensus       397 ~dP~~Rps~~~~~~-~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~  442 (457)
                      .||++||+    +. +|++||||++++|..+  +...|||.|......|
T Consensus       255 ~dp~~R~~----~~~~i~~hp~f~~~~w~~l~~~~~~~p~~p~~~~~~d  299 (345)
T 1xjd_A          255 REPEKRLG----VRGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFD  299 (345)
T ss_dssp             SSGGGSBT----TBSCGGGSGGGTTCCHHHHHTTCSCC-----------
T ss_pred             CCHhHcCC----ChHHHHcCccccCCCHHHHhhCCCCCCcCCCCCCcch
Confidence            99999999    76 9999999999999887  4578999987655444

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.7e-56  Score=446.78  Aligned_cols=288  Identities=36%  Similarity=0.674  Sum_probs=240.7

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHH-HHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI-LEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~i-l~~l~H~nIv~l~~~~~  156 (457)
                      .+..++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+..|..+ ++.++||||+++++++.
T Consensus        34 ~~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~  109 (373)
T 2r5t_A           34 HAKPSDFHFLKVIGKGSFGKVLLARHK----AEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQ  109 (373)
T ss_dssp             TCCGGGEEEEEEEECCTTCEEEEEEET----TTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEE
T ss_pred             CCChhheEEEEEEeeCCCeEEEEEEEc----CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEE
Confidence            456689999999999999999999987    4788999999988766555556666777777 46789999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+.+||||||++||+|..++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++
T Consensus       110 ~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~  187 (373)
T 2r5t_A          110 TADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCK  187 (373)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCG
T ss_pred             eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccc
Confidence            999999999999999999888775  679999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                      .....
T Consensus       188 ~~~~~----------------------------------------------------------------------~~~~~  197 (373)
T 2r5t_A          188 ENIEH----------------------------------------------------------------------NSTTS  197 (373)
T ss_dssp             GGBCC----------------------------------------------------------------------CCCCC
T ss_pred             ccccC----------------------------------------------------------------------CCccc
Confidence            42110                                                                      00112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      +++||+.|+|||++.+..|+.++|||||||++|||++|..||.+.+..+.+..++.....++.  .++.++++||.+||+
T Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~li~~lL~  275 (373)
T 2r5t_A          198 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKP--NITNSARHLLEGLLQ  275 (373)
T ss_dssp             SBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCS--SSCHHHHHHHHHHTC
T ss_pred             cccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCC--CCCHHHHHHHHHHcc
Confidence            457999999999999999999999999999999999999999998888888888888766664  489999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcccc
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDL  443 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~  443 (457)
                      .||.+||+....+.+|++||||++++|..+  +...|||+|......|.
T Consensus       276 ~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~~~~~~d~  324 (373)
T 2r5t_A          276 KDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPNDL  324 (373)
T ss_dssp             SSGGGSTTTTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCCC----
T ss_pred             cCHHhCCCCCCCHHHHhCCccccCCCHHHHHhCCCCCCCCCCCCCcchh
Confidence            999999997777899999999999999887  56789999987655443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.9e-56  Score=450.67  Aligned_cols=289  Identities=34%  Similarity=0.629  Sum_probs=251.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|+++++||+|+||+||+|+++    .+++.||+|++.+...........+..|+++|+.++||||+++++++.+
T Consensus        65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~----~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           65 RMKAEDYEVVKVIGRGAFGEVQLVRHK----STRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             ccCccccEEEEEEEcCCCEEEEEEEEC----CCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            456679999999999999999999987    4788999999988766555555667889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+.+|||||||+||+|..++..   ..+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||+++.
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~  217 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK  217 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence            9999999999999999999876   4699999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                     ....+
T Consensus       218 ~~~~~~---------------------------------------------------------------------~~~~~  228 (410)
T 3v8s_A          218 MNKEGM---------------------------------------------------------------------VRCDT  228 (410)
T ss_dssp             CCTTSE---------------------------------------------------------------------EECCS
T ss_pred             eccCCc---------------------------------------------------------------------ccccC
Confidence            432110                                                                     01124


Q ss_pred             ccCCCCccCchhhcCCC----CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCCCCCChHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEG----HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~----~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll  391 (457)
                      .+||+.|+|||++.+..    |+.++|||||||++|||++|+.||.+.+....+.+++...  +.+|....++.++++||
T Consensus       229 ~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li  308 (410)
T 3v8s_A          229 AVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLI  308 (410)
T ss_dssp             CCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHH
T ss_pred             CcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHH
Confidence            57999999999998765    7899999999999999999999999988888888887654  56666667999999999


Q ss_pred             HHHhhhCCCC--CCCCCcChHHHhcCCCCCCCCchh--hhccCCCCCCCCCCccccccc
Q 012762          392 AQLLVKDPTR--RMGSKMGATAIKRHQFFNGVNWAL--LRCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       392 ~~~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  446 (457)
                      .+||..+|.+  |++    ++||++||||++++|..  ++...|||+|......|.+.-
T Consensus       309 ~~lL~~~~~rlgR~~----~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~~~~~~d~~~f  363 (410)
T 3v8s_A          309 CAFLTDREVRLGRNG----VEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNF  363 (410)
T ss_dssp             HHHSSCGGGCTTSSC----HHHHHTSGGGCCSSCCSTTGGGSCCSCCCCCSSTTCCTTS
T ss_pred             HHHccChhhhCCCCC----HHHHhcCccccCCCHHHHhhcccCCCCCCcCCCccchhhc
Confidence            9999988888  999    99999999999999864  477889999988776665443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.2e-55  Score=436.82  Aligned_cols=289  Identities=34%  Similarity=0.630  Sum_probs=255.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ......++|++++.||+|+||+||+|+++    .+|+.||+|++.+...........+.+|+++|+.++||||+++++++
T Consensus        35 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  110 (350)
T 1rdq_E           35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHK----ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF  110 (350)
T ss_dssp             CCCCCGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccCCCHHHCEEEEEeecCcCcEEEEEEEC----CCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            34567789999999999999999999986    47889999999887766656677888899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+.+.+||||||++|++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus       111 ~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a  188 (350)
T 1rdq_E          111 KDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA  188 (350)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             EcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccc
Confidence            9999999999999999999998875  56999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.....                                                                         .
T Consensus       189 ~~~~~~-------------------------------------------------------------------------~  195 (350)
T 1rdq_E          189 KRVKGR-------------------------------------------------------------------------T  195 (350)
T ss_dssp             EECSSC-------------------------------------------------------------------------B
T ss_pred             eeccCC-------------------------------------------------------------------------c
Confidence            644211                                                                         1


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      .+.+||+.|+|||++.+..++.++|||||||++|||++|..||.+......+..+......+|.  .++.++.+||.+||
T Consensus       196 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~lL  273 (350)
T 1rdq_E          196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS--HFSSDLKDLLRNLL  273 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TCCHHHHHHHHHHS
T ss_pred             ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHh
Confidence            1347999999999999999999999999999999999999999998888888888888777665  48999999999999


Q ss_pred             hhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcccccc
Q 012762          396 VKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTT  445 (457)
Q Consensus       396 ~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~  445 (457)
                      +.||.+||+.. ..+++|++||||++++|..+  +...|||+|......|.+.
T Consensus       274 ~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~~~~~~~~p~~p~~~~~~~~~~  326 (350)
T 1rdq_E          274 QVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSN  326 (350)
T ss_dssp             CSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTCCTT
T ss_pred             hcCHHhccCCccCCHHHHHhCcCcCCCCHHHHhhccCCCCCCCCCCCcccccc
Confidence            99999999842 45899999999999999877  4678999998765555443

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.3e-55  Score=435.85  Aligned_cols=289  Identities=35%  Similarity=0.679  Sum_probs=245.8

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      ..+..++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|+++ +||||+++++++
T Consensus         4 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~   79 (345)
T 3a8x_A            4 DPLGLQDFDLLRVIGRGSYAKVLLVRLK----KTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF   79 (345)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             CCCchhheEEEEEEEecCCeEEEEEEEC----CCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE
Confidence            3466789999999999999999999987    47899999999887665556667788899999987 899999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+.+||||||++||+|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        80 ~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a  157 (345)
T 3a8x_A           80 QTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC  157 (345)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGC
T ss_pred             EeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEecccc
Confidence            9999999999999999999888765  57999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +......                                                                      ...
T Consensus       158 ~~~~~~~----------------------------------------------------------------------~~~  167 (345)
T 3a8x_A          158 KEGLRPG----------------------------------------------------------------------DTT  167 (345)
T ss_dssp             BCSCCTT----------------------------------------------------------------------CCB
T ss_pred             ccccCCC----------------------------------------------------------------------Ccc
Confidence            6432110                                                                      011


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC---------ChHHHHHHHHhcccCCCCCCCCChH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI---------DHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                      .+++||+.|+|||++.+..++.++|||||||++|||++|+.||...         ........+......+|.  .++.+
T Consensus       168 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~--~~s~~  245 (345)
T 3a8x_A          168 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR--SLSVK  245 (345)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCT--TSCHH
T ss_pred             cccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCC--CCCHH
Confidence            2457999999999999999999999999999999999999999752         233445566666666654  48999


Q ss_pred             HHHHHHHHhhhCCCCCCCCC--cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcccc
Q 012762          387 AKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDL  443 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~--~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~  443 (457)
                      +++||.+||..||.+||+..  ..++|+++||||++++|..+  +...|||.|......|.
T Consensus       246 ~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~~~~~~~~  306 (345)
T 3a8x_A          246 AASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGL  306 (345)
T ss_dssp             HHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCTTTCG
T ss_pred             HHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCCCCCcchh
Confidence            99999999999999999942  12489999999999999877  45778999987654443

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=9.1e-56  Score=451.34  Aligned_cols=290  Identities=33%  Similarity=0.619  Sum_probs=250.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|+++++||+|+||+||+|+++    .+++.||+|++.+...........+..|+++|..++||||++++++|.+
T Consensus        70 ~~~~~~y~~~~~LG~G~fG~V~~~~~~----~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFGEVAVVKLK----NADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             cCChhheEEEEEEEeCCCEEEEEEEEc----CCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            345679999999999999999999987    4788999999988765555555568889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+.+|||||||+||+|..++... ...+++..++.++.||+.||.|||++|||||||||+||||+.+|.+||+|||+++.
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~  224 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK  224 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence            99999999999999999998763 36799999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                     .....
T Consensus       225 ~~~~~~---------------------------------------------------------------------~~~~~  235 (437)
T 4aw2_A          225 LMEDGT---------------------------------------------------------------------VQSSV  235 (437)
T ss_dssp             CCTTSC---------------------------------------------------------------------EECCS
T ss_pred             cccCCC---------------------------------------------------------------------ccccc
Confidence            432111                                                                     01113


Q ss_pred             ccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCCC-CCCChHHHH
Q 012762          318 FVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPKE-PSVPGPAKD  389 (457)
Q Consensus       318 ~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~  389 (457)
                      .+||+.|+|||++.     +..|+.++|||||||++|||++|+.||.+.+..+.+.+++...  +.+|.. ..+++++++
T Consensus       236 ~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~d  315 (437)
T 4aw2_A          236 AVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKD  315 (437)
T ss_dssp             CCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHH
T ss_pred             ccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHH
Confidence            47999999999997     4568999999999999999999999999988888888887643  444443 458999999


Q ss_pred             HHHHHhhhCCCC--CCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCcccccc
Q 012762          390 LIAQLLVKDPTR--RMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRDLTT  445 (457)
Q Consensus       390 ll~~~L~~dP~~--Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (457)
                      ||.+||..+|++  |++    ++|+++||||++++|..++...|||+|......|.+.
T Consensus       316 Li~~lL~~~~~r~~r~~----~~eil~Hpff~~i~w~~l~~~~~p~~P~~~~~~d~~~  369 (437)
T 4aw2_A          316 LIRRLICSREHRLGQNG----IEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTDTSN  369 (437)
T ss_dssp             HHHTTSSCGGGCTTTTT----THHHHTSGGGTTCCTTTGGGSCCSCCCCCSSTTCCTT
T ss_pred             HHHHHhcccccccCCCC----HHHHhCCCccCCCCHHHHhhCCCCCCCcCCCccchhh
Confidence            999999988888  999    9999999999999999999999999998776666544

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-55  Score=446.16  Aligned_cols=286  Identities=36%  Similarity=0.655  Sum_probs=243.2

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++++.||+|+||+||+|+++    .+|+.||+|++.+...........+..|+++|..++||||+++++++.+
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~----~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMK----QTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            356689999999999999999999987    4789999999988765555555668889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+.+||||||++||+|..++... ...+++..++.++.||+.||+|||++|||||||||+||||+.+|.+||+|||+++.
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~  211 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKF-GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLK  211 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhee
Confidence            99999999999999999998764 24799999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                     .....
T Consensus       212 ~~~~~~---------------------------------------------------------------------~~~~~  222 (412)
T 2vd5_A          212 LRADGT---------------------------------------------------------------------VRSLV  222 (412)
T ss_dssp             CCTTSC---------------------------------------------------------------------EECSS
T ss_pred             ccCCCc---------------------------------------------------------------------cccce
Confidence            432111                                                                     01123


Q ss_pred             ccCCCCccCchhhc-------CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc--cCCCC-CCCCChHH
Q 012762          318 FVGTHEYLAPEIIS-------GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA--LEFPK-EPSVPGPA  387 (457)
Q Consensus       318 ~~gt~~y~aPE~l~-------~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~  387 (457)
                      .+||+.|+|||++.       +..|+.++|||||||++|||++|+.||.+.+..+.+.+++...  +.+|. ...++.++
T Consensus       223 ~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~  302 (412)
T 2vd5_A          223 AVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEA  302 (412)
T ss_dssp             CCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHH
T ss_pred             eccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHH
Confidence            57999999999997       3468999999999999999999999999988888888877643  34443 24689999


Q ss_pred             HHHHHHHhhhCCCCCC---CCCcChHHHhcCCCCCCCCchhhhccCCCCCCCCCCccc
Q 012762          388 KDLIAQLLVKDPTRRM---GSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTCRD  442 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rp---s~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  442 (457)
                      ++||.+||. +|.+|+   +    ++||++||||++++|..++...|||+|......|
T Consensus       303 ~dli~~lL~-~p~~Rlgr~~----~~ei~~Hpff~~i~w~~l~~~~~p~~p~~~~~~d  355 (412)
T 2vd5_A          303 RDFIQRLLC-PPETRLGRGG----AGDFRTHPFFFGLDWDGLRDSVPPFTPDFEGATD  355 (412)
T ss_dssp             HHHHHTTSS-CGGGCTTTTT----HHHHHTSGGGTTCCSTTSTTSCCSCCCC-----C
T ss_pred             HHHHHHHcC-ChhhcCCCCC----HHHHhcCCCcCCCCHHHHhhcCCCCCCcCCCccc
Confidence            999999999 999985   6    9999999999999999999999999998765444

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.6e-54  Score=435.11  Aligned_cols=281  Identities=29%  Similarity=0.578  Sum_probs=243.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|+.++|||||+++++
T Consensus         8 ~~~~v~~~~y~i~~~LG~G~fG~V~~~~~~----~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~   83 (384)
T 4fr4_A            8 ENEDVNFDHFEILRAIGKGSFGKVCIVQKN----DTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYS   83 (384)
T ss_dssp             CCCCCCGGGEEEEEEEECCTTCCEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             CCCCCChHHeEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            345678899999999999999999999987    4788999999998876666677888899999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.+.+.+|+||||+.||+|..++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||+
T Consensus        84 ~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~  161 (384)
T 4fr4_A           84 FQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNI  161 (384)
T ss_dssp             EECSSEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             EEeCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccce
Confidence            99999999999999999999988764  6799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++......                                                                       .
T Consensus       162 a~~~~~~~-----------------------------------------------------------------------~  170 (384)
T 4fr4_A          162 AAMLPRET-----------------------------------------------------------------------Q  170 (384)
T ss_dssp             CEECCTTC-----------------------------------------------------------------------C
T ss_pred             eeeccCCC-----------------------------------------------------------------------c
Confidence            86543211                                                                       1


Q ss_pred             cccccCCCCccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          315 SMSFVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                      ..+++||+.|+|||++.+   ..|+.++|||||||++|||++|+.||....   .......+......++.  .++.++.
T Consensus       171 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~--~~s~~~~  248 (384)
T 4fr4_A          171 ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPS--AWSQEMV  248 (384)
T ss_dssp             BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCT--TSCHHHH
T ss_pred             eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCC--cCCHHHH
Confidence            124579999999999974   458999999999999999999999997543   33444455555555554  4899999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh--hccCCCCCCCC
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCAKPPFIPRP  437 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~  437 (457)
                      +||.+||..||.+||+.   +++|++||||++++|..+  +...|||+|..
T Consensus       249 ~li~~lL~~dP~~R~s~---~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~  296 (384)
T 4fr4_A          249 SLLKKLLEPNPDQRFSQ---LSDVQNFPYMNDINWDAVFQKRLIPGFIPNK  296 (384)
T ss_dssp             HHHHHHSCSSGGGSCCS---HHHHHTSGGGTTCCHHHHHTTCSCCCCCCSC
T ss_pred             HHHHHHhcCCHhHhccc---HHHHHcChhhhcCCHHHHHhCCCCCCCCCCC
Confidence            99999999999999985   899999999999999877  46779999875

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=6.9e-55  Score=447.32  Aligned_cols=288  Identities=35%  Similarity=0.703  Sum_probs=242.6

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|+++++||+|+||+||+|.++    .+|+.||||++.+...........+.+|+++|+.++||||+++++++.
T Consensus       143 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~  218 (446)
T 4ejn_A          143 HRVTMNEFEYLKLLGKGTFGKVILVKEK----ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ  218 (446)
T ss_dssp             -CCCGGGEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEE
T ss_pred             cCCChHHcEEeEEEeeCcCEEEEEEEEc----CCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEe
Confidence            4456789999999999999999999986    478999999998776555556667788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..+.+||||||+++++|..++...  ..+++..++.++.||+.||+|||+ .||+||||||+||||+.++.+||+|||++
T Consensus       219 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a  296 (446)
T 4ejn_A          219 THDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLC  296 (446)
T ss_dssp             ETTEEEEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCC
T ss_pred             eCCEEEEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCc
Confidence            999999999999999999888775  679999999999999999999998 99999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +......                                                                      ...
T Consensus       297 ~~~~~~~----------------------------------------------------------------------~~~  306 (446)
T 4ejn_A          297 KEGIKDG----------------------------------------------------------------------ATM  306 (446)
T ss_dssp             CTTCC---------------------------------------------------------------------------
T ss_pred             eeccCCC----------------------------------------------------------------------ccc
Confidence            6432111                                                                      011


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.........+......++..  +++++.+||.+||
T Consensus       307 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~--~~~~~~~li~~~L  384 (446)
T 4ejn_A          307 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRT--LGPEAKSLLSGLL  384 (446)
T ss_dssp             CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT--SCHHHHHHHHHHT
T ss_pred             ccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCcc--CCHHHHHHHHHHc
Confidence            23579999999999999999999999999999999999999999988888888888887776654  8999999999999


Q ss_pred             hhCCCCCC-----CCCcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccc
Q 012762          396 VKDPTRRM-----GSKMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       396 ~~dP~~Rp-----s~~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  446 (457)
                      ..||.+||     +    ++|+++||||++++|..+  +...|||.|......|.+.-
T Consensus       385 ~~dP~~R~~~~~~t----~~ell~hp~f~~~~~~~~~~~~~~pp~~p~~~~~~~~~~~  438 (446)
T 4ejn_A          385 KKDPKQRLGGGSED----AKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYF  438 (446)
T ss_dssp             CSSTTTSTTCSTTT----HHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCSSTTCCTTC
T ss_pred             ccCHHHhCCCCCCC----HHHHHhCccccCCCHHHHhhCcCCCCccCCCCCccchhhc
Confidence            99999999     7    999999999999999876  56789999988776665443

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3e-54  Score=462.97  Aligned_cols=287  Identities=32%  Similarity=0.656  Sum_probs=250.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      ....+.+++|+++++||+|+||+||+|+++    .+++.||||++++...........+..|+++|..+ +||||+.+++
T Consensus       334 ~~~~~~~~~f~~~~~LG~G~fG~V~~~~~~----~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~  409 (674)
T 3pfq_A          334 NRDRMKLTDFNFLMVLGKGSFGKVMLSERK----GTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHS  409 (674)
T ss_dssp             ------CTTEEEEEESSBTTTBCEEEEEES----SSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEE
T ss_pred             ccccccccceEEEEEEccCCCEEEEEEEEC----CCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence            345577889999999999999999999987    47889999999987666666677788899999987 7999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++.+.+.+||||||++||+|..++...  +.+++..++.++.||+.||+|||++|||||||||+||||+.+|.+||+|||
T Consensus       410 ~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFG  487 (674)
T 3pfq_A          410 CFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFG  487 (674)
T ss_dssp             ECBCSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCT
T ss_pred             EEEeCCEEEEEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecc
Confidence            999999999999999999999998875  679999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                      .
T Consensus       488 la~~~~~~~----------------------------------------------------------------------~  497 (674)
T 3pfq_A          488 MCKENIWDG----------------------------------------------------------------------V  497 (674)
T ss_dssp             TCEECCCTT----------------------------------------------------------------------C
T ss_pred             eeeccccCC----------------------------------------------------------------------c
Confidence            986432110                                                                      1


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ...+++||+.|+|||++.+..|+.++|||||||+||||++|+.||.+.+..+.+..++.....+|..  ++.++++||.+
T Consensus       498 ~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~--~s~~~~~li~~  575 (674)
T 3pfq_A          498 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKS--MSKEAVAICKG  575 (674)
T ss_dssp             CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTT--SCHHHHHHHHH
T ss_pred             ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCcc--CCHHHHHHHHH
Confidence            1224579999999999999999999999999999999999999999999989999999888777754  99999999999


Q ss_pred             HhhhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCC
Q 012762          394 LLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVT  439 (457)
Q Consensus       394 ~L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~  439 (457)
                      ||+.||++|++.. ..++||++||||++++|..+  +...|||+|+...
T Consensus       576 lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~~~~  624 (674)
T 3pfq_A          576 LMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASG  624 (674)
T ss_dssp             HSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTTTCSCCSCCCBCCG
T ss_pred             HccCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHhCCCCCCCCCcCCC
Confidence            9999999999931 22499999999999999987  5678999998754

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=4.4e-54  Score=423.56  Aligned_cols=295  Identities=34%  Similarity=0.652  Sum_probs=235.1

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+..++|++.+.||+|+||+||+|++.. +..+++.||+|++++..... ......+.+|+++|+.++||||+++++++
T Consensus        12 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~-~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   90 (327)
T 3a62_A           12 EKIRPECFELLRVLGKGGYGKVFQVRKVT-GANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAF   90 (327)
T ss_dssp             -CCCGGGEEEEEEEEEETTEEEEEEEECS-STTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEE
T ss_pred             CCCCHHHeEEEEEEEeCCCEEEEEEEEec-cCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEE
Confidence            34667899999999999999999998742 22478999999998654322 22345577899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+.+|+||||++|++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||++
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~  168 (327)
T 3a62_A           91 QTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC  168 (327)
T ss_dssp             ECSSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcc
Confidence            9999999999999999999988765  56999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +......                                                                      ...
T Consensus       169 ~~~~~~~----------------------------------------------------------------------~~~  178 (327)
T 3a62_A          169 KESIHDG----------------------------------------------------------------------TVT  178 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCC----------------------------------------------------------------------ccc
Confidence            5432110                                                                      001


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+......++.  .++.++.+||.+||
T Consensus       179 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~--~~~~~~~~li~~~L  256 (327)
T 3a62_A          179 HTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPP--YLTQEARDLLKKLL  256 (327)
T ss_dssp             CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCT--TSCHHHHHHHHHHS
T ss_pred             cccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCC--CCCHHHHHHHHHHH
Confidence            1346999999999999999999999999999999999999999998888888888877766664  48999999999999


Q ss_pred             hhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccccc
Q 012762          396 VKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLTTT  446 (457)
Q Consensus       396 ~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  446 (457)
                      ..||++||+.. ..+.++++||||++++|..+  +...|||.|......|....
T Consensus       257 ~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~  310 (327)
T 3a62_A          257 KRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQF  310 (327)
T ss_dssp             CSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHHHTTCSCCSCCCC----------
T ss_pred             hcCHhhccCCCCCCHHHHHcCCcccCCCHHHHhhccCCCCCCCCcCChhhhhhc
Confidence            99999999432 13999999999999999866  45678999988766665443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.1e-53  Score=445.60  Aligned_cols=287  Identities=30%  Similarity=0.578  Sum_probs=248.1

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|.+++.||+|+||+||+|+++    .+|+.||+|++.+...........+..|+++|+.++||||+++++++.
T Consensus       180 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~----~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~  255 (543)
T 3c4z_A          180 QPMGEDWFLDFRVLGRGGFGEVFACQMK----ATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFE  255 (543)
T ss_dssp             SCCCGGGEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             ccCChhheEEEEEEeeCCCeEEEEEEEC----CCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            3466789999999999999999999986    478999999998877665566678888999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ..+.+||||||++||+|..++....  ...+++..++.++.||+.||.|||++||+||||||+||||+.+|.+||+|||+
T Consensus       256 ~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          256 TKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             eCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecce
Confidence            9999999999999999998887643  35799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.......                                                                      .
T Consensus       336 a~~~~~~~~----------------------------------------------------------------------~  345 (543)
T 3c4z_A          336 AVELKAGQT----------------------------------------------------------------------K  345 (543)
T ss_dssp             CEECCTTCC----------------------------------------------------------------------C
T ss_pred             eeeccCCCc----------------------------------------------------------------------c
Confidence            865432110                                                                      0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC----hHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID----HELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                      ...++||+.|+|||++.+..|+.++|||||||++|||++|+.||.+..    .......+......+|.  .++.++++|
T Consensus       346 ~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~l  423 (543)
T 3c4z_A          346 TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD--KFSPASKDF  423 (543)
T ss_dssp             BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCT--TSCHHHHHH
T ss_pred             cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCc--ccCHHHHHH
Confidence            113479999999999999999999999999999999999999998753    34556666666655553  589999999


Q ss_pred             HHHHhhhCCCCCCCCCc-ChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          391 IAQLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~-~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                      |.+||..||++||+... .+++|++||||++++|..+.  ...|||+|.+..
T Consensus       424 i~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~~~~  475 (543)
T 3c4z_A          424 CEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRT  475 (543)
T ss_dssp             HHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCCSSS
T ss_pred             HHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCCccc
Confidence            99999999999998543 47999999999999999875  568999998754

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=9.1e-54  Score=447.67  Aligned_cols=286  Identities=33%  Similarity=0.572  Sum_probs=245.1

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||+||+|+++    .+|+.||+|++.+...........+.+|+++|+.++||||+++++++.
T Consensus       179 ~~~~~~~f~~~~~LG~G~fG~Vy~a~~~----~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~  254 (576)
T 2acx_A          179 QPVTKNTFRQYRVLGKGGFGEVCACQVR----ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYE  254 (576)
T ss_dssp             SCCCGGGEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             cCccccceEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEe
Confidence            3467789999999999999999999986    478999999999877666666777888999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +.+.+||||||++||+|..++.......+++..++.++.||+.||.|||++|||||||||+||||+.+|.+||+|||+++
T Consensus       255 ~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~  334 (576)
T 2acx_A          255 TKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV  334 (576)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccce
Confidence            99999999999999999998887655669999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                       ...
T Consensus       335 ~~~~~~-----------------------------------------------------------------------~~~  343 (576)
T 2acx_A          335 HVPEGQ-----------------------------------------------------------------------TIK  343 (576)
T ss_dssp             ECCTTC-----------------------------------------------------------------------CEE
T ss_pred             ecccCc-----------------------------------------------------------------------ccc
Confidence            543211                                                                       011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ..+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+...    ......+......++  ..++.++++||.
T Consensus       344 ~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p--~~~s~~~~dLI~  421 (576)
T 2acx_A          344 GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYS--ERFSPQARSLCS  421 (576)
T ss_dssp             CCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCC--TTSCHHHHHHHH
T ss_pred             ccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCC--ccCCHHHHHHHH
Confidence            34699999999999998999999999999999999999999987542    334444444444444  458999999999


Q ss_pred             HHhhhCCCCCCCCCc-ChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCC
Q 012762          393 QLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWALLR--CAKPPFIPRPVT  439 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~-~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~  439 (457)
                      +||..||.+||+... .++||++||||++++|..+.  ...|||+|.+..
T Consensus       422 ~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p~~~~  471 (576)
T 2acx_A          422 QLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQA  471 (576)
T ss_dssp             HHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC
T ss_pred             HhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHHhcCCCCCCCCCCccc
Confidence            999999999994221 28999999999999998875  567999998753

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.2e-52  Score=413.52  Aligned_cols=262  Identities=25%  Similarity=0.445  Sum_probs=231.2

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ....++|++++.||+|+||+||+|.+.    .+|+.||||++.+... .......+.+|+++|+.++||||+++++++..
T Consensus        11 ~~~~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~   85 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNFAKVKLARHI----LTGREVAIKIIDKTQL-NPTSLQKLFREVRIMKILNHPNIVKLFEVIET   85 (328)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             CCccCCEEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEhhcC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE
Confidence            345678999999999999999999986    4789999999987543 23445677889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+.+|+||||+++++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        86 ~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A           86 EKTLYLIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNE  163 (328)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGG
T ss_pred             CCEEEEEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCcee
Confidence            99999999999999999988765  6799999999999999999999999999999999999999999999999999754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .....                                                                       ....
T Consensus       164 ~~~~~-----------------------------------------------------------------------~~~~  172 (328)
T 3fe3_A          164 FTVGG-----------------------------------------------------------------------KLDA  172 (328)
T ss_dssp             GSSSC-----------------------------------------------------------------------GGGT
T ss_pred             cCCCC-----------------------------------------------------------------------cccc
Confidence            32110                                                                       1123


Q ss_pred             ccCCCCccCchhhcCCCCC-ccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHG-NAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~-~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      .+||+.|+|||++.+..+. .++|||||||++|+|++|+.||.+.+.......+..+.+..|..  ++.++.+||.+||.
T Consensus       173 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~--~s~~~~~li~~~L~  250 (328)
T 3fe3_A          173 FCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFY--MSTDCENLLKRFLV  250 (328)
T ss_dssp             TSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT--SCHHHHHHHHHHCC
T ss_pred             ccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHCC
Confidence            5799999999999988874 79999999999999999999999998888888888887777654  89999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      .||.+|||    ++|+++||||+...+
T Consensus       251 ~dP~~R~t----~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          251 LNPIKRGT----LEQIMKDRWINAGHE  273 (328)
T ss_dssp             SSTTTSCC----HHHHTTCTTTTTTCT
T ss_pred             CChhHCcC----HHHHhcCHhhcCCCc
Confidence            99999999    999999999987543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=9.4e-53  Score=419.44  Aligned_cols=264  Identities=28%  Similarity=0.431  Sum_probs=231.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .++|++.+.||+|+||+||+|.++    .+|+.||+|++.+......   .....+.+|+++|+.++||||+++++++.+
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~----~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~   86 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREK----STGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN   86 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             hhceEEeeEEeeCcCEEEEEEEEC----CCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe
Confidence            357999999999999999999987    4789999999987543221   134678889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFD  233 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG  233 (457)
                      .+.+|+||||++|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||
T Consensus        87 ~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG  164 (361)
T 2yab_A           87 RTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (361)
T ss_dssp             SSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence            99999999999999999988764  6799999999999999999999999999999999999998776    79999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.......                                                                       
T Consensus       165 ~a~~~~~~~-----------------------------------------------------------------------  173 (361)
T 2yab_A          165 LAHEIEDGV-----------------------------------------------------------------------  173 (361)
T ss_dssp             SCEECCTTC-----------------------------------------------------------------------
T ss_pred             CceEcCCCC-----------------------------------------------------------------------
Confidence            986543211                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLI  391 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll  391 (457)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+....+.+..+....+.++.  ...++.++++||
T Consensus       174 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  253 (361)
T 2yab_A          174 EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFI  253 (361)
T ss_dssp             CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHH
T ss_pred             ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHH
Confidence            011346999999999999999999999999999999999999999998888888888877766653  246889999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      .+||..||++||+    +.|+++||||+.++|..
T Consensus       254 ~~~L~~dP~~R~t----~~e~l~hp~~~~~~~~~  283 (361)
T 2yab_A          254 RKLLVKETRKRLT----IQEALRHPWITPVDTQQ  283 (361)
T ss_dssp             HHHSCSSTTTSCC----HHHHHTSTTTSCSSHHH
T ss_pred             HHHCCCChhHCcC----HHHHhcCcCcCCCchhh
Confidence            9999999999999    99999999999998854

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.5e-53  Score=414.84  Aligned_cols=251  Identities=22%  Similarity=0.273  Sum_probs=191.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      .+|.+.++||+|+||+||+|++      +|+.||||+++....    .....+.|+.++.+++|||||++++++..++  
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~------~g~~VAvK~l~~~~~----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~   72 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW------RGEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENILGFIAADNKDNGT   72 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE------TTEEEEEEEECGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSS
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE------CCEEEEEEEECccch----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC
Confidence            4689999999999999999986      478999999976421    2222334555566789999999999997654  


Q ss_pred             --cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeecCCCCCeEEccCCCEEE
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM--------GIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~--------~iiHrDIKp~NIll~~~~~vkl  229 (457)
                        .+|||||||++|+|.++++.   ..+++..+..++.|++.||+|||++        +||||||||+||||+.++.+||
T Consensus        73 ~~~~~lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki  149 (303)
T 3hmm_A           73 WTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  149 (303)
T ss_dssp             SEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred             ceEEEEEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEE
Confidence              57999999999999999987   5699999999999999999999987        9999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||+++.........                                                                
T Consensus       150 ~DFGla~~~~~~~~~~----------------------------------------------------------------  165 (303)
T 3hmm_A          150 ADLGLAVRHDSATDTI----------------------------------------------------------------  165 (303)
T ss_dssp             CCCTTCEEEETTTTEE----------------------------------------------------------------
T ss_pred             EeCCCCccccCCCCce----------------------------------------------------------------
Confidence            9999987543221110                                                                


Q ss_pred             CCccccccccCCCCccCchhhcCC------CCCccchhhhhhHHHHHHhcCCCCCCCCC---------------hHHHHH
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGID---------------HELTLA  368 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~------~~~~~sDiwSlG~il~elltG~~Pf~~~~---------------~~~~~~  368 (457)
                        .......+||+.|||||++.+.      .|+.++|||||||+||||+||..||....               ......
T Consensus       166 --~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  243 (303)
T 3hmm_A          166 --DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRK  243 (303)
T ss_dssp             --SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHH
T ss_pred             --eeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHH
Confidence              0111235799999999999765      35779999999999999999977653211               122233


Q ss_pred             HHHhcccCCCCCC-----CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          369 NVVARALEFPKEP-----SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       369 ~~~~~~~~~~~~~-----~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+.....+.+.+.     ..+..+.+|+.+||+.||++|||    +.||++.
T Consensus       244 ~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt----~~ei~~~  291 (303)
T 3hmm_A          244 VVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT----ALRIKKT  291 (303)
T ss_dssp             HHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCC----HHHHHHH
T ss_pred             HHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcC----HHHHHHH
Confidence            3333333322211     12246889999999999999999    8887653

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=9.4e-52  Score=401.38  Aligned_cols=258  Identities=24%  Similarity=0.371  Sum_probs=222.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.++||+|+||+||+|.+.    .+++.||+|++.....   .....+.+|+.+++.++||||+++++++..++
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   90 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDV----ATGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGD   90 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBT----TTCCEEEEEEEEGGGC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             hhhceeeeeeeccCCCeEEEEEEEC----CCCcEEEEEEeecccc---cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECC
Confidence            3468999999999999999999876    4788999999976532   34566788999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||++|++|.+++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        91 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (297)
T 3fxz_A           91 ELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT  167 (297)
T ss_dssp             EEEEEEECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEEECCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecC
Confidence            99999999999999999887   469999999999999999999999999999999999999999999999999976543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      .....+
T Consensus       168 ~~~~----------------------------------------------------------------------~~~~~~  177 (297)
T 3fxz_A          168 PEQS----------------------------------------------------------------------KRSTMV  177 (297)
T ss_dssp             STTC----------------------------------------------------------------------CBCCCC
T ss_pred             Cccc----------------------------------------------------------------------ccCCcc
Confidence            2111                                                                      111346


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ||+.|+|||++.+..++.++|||||||++|||++|..||.+.........+..... .......++..+.+||.+||+.|
T Consensus       178 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~d  257 (297)
T 3fxz_A          178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMD  257 (297)
T ss_dssp             SCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSS
T ss_pred             CCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999999999998776665555544332 33344568899999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |++||+    +.|+++||||+..
T Consensus       258 p~~Rps----~~ell~h~~~~~~  276 (297)
T 3fxz_A          258 VEKRGS----AKELLQHQFLKIA  276 (297)
T ss_dssp             TTTSCC----HHHHTTCGGGGGC
T ss_pred             hhHCcC----HHHHhhChhhccc
Confidence            999999    9999999999853

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=5.1e-51  Score=398.81  Aligned_cols=264  Identities=25%  Similarity=0.389  Sum_probs=217.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      --.++|+++++||+|+||+||+|++.     +++.||+|++..... .......+.+|+++|+.++||||+++++++..+
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   91 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDS-----QGRIVALKRIRLDAE-DEGIPSTAIREISLLKELHHPNIVSLIDVIHSE   91 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEET-----TSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEEC-----CCCEEEEEEEecccc-cchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC
Confidence            34578999999999999999999874     588999999975432 233456778899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||++ ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++..
T Consensus        92 ~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~  169 (311)
T 3niz_A           92 RCLTLVFEFME-KDLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAF  169 (311)
T ss_dssp             SCEEEEEECCS-EEHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEET
T ss_pred             CEEEEEEcCCC-CCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceec
Confidence            99999999996 5787777654 356999999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                      ....
T Consensus       170 ~~~~~~----------------------------------------------------------------------~~~~  179 (311)
T 3niz_A          170 GIPVRS----------------------------------------------------------------------YTHE  179 (311)
T ss_dssp             TSCCC-------------------------------------------------------------------------CC
T ss_pred             CCCccc----------------------------------------------------------------------ccCC
Confidence            321100                                                                      1123


Q ss_pred             cCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC------------------
Q 012762          319 VGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK------------------  379 (457)
Q Consensus       319 ~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~------------------  379 (457)
                      +||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+......+..+.........                  
T Consensus       180 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3niz_A          180 VVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQ  259 (311)
T ss_dssp             CCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCC
T ss_pred             cccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccc
Confidence            58999999999987 45899999999999999999999999987776666665542211110                  


Q ss_pred             ----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          380 ----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       380 ----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                .+.++.++.+||.+||+.||++|||    +.|+|+||||++++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          260 VFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRIS----ARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             CCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTSCTT
T ss_pred             cccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCC----HHHHhcCcccccCCcc
Confidence                      1235678999999999999999999    9999999999998875

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.2e-51  Score=416.87  Aligned_cols=258  Identities=26%  Similarity=0.475  Sum_probs=225.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||+|+||+||+|.++    .+|+.||+|++.+.... ......+.+|+++|+.++||||+++++++.+++..
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~----~~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   85 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKV----LAGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHH   85 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEET----TTTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEE
T ss_pred             CCeEEEEEeccCCCeEEEEEEEC----CCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEE
Confidence            57999999999999999999877    48899999999876443 23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc---cCCCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR---SDGHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~---~~~~vkl~DFG~s~~~  238 (457)
                      |+|||||.||+|.+.+...  ..+++..+..++.||+.||.|||++||+||||||+|||++   .++.+||+|||++...
T Consensus        86 ~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~  163 (444)
T 3soa_A           86 YLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEV  163 (444)
T ss_dssp             EEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCC
T ss_pred             EEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEe
Confidence            9999999999999888775  6799999999999999999999999999999999999998   4578999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                      .....
T Consensus       164 ~~~~~----------------------------------------------------------------------~~~~~  173 (444)
T 3soa_A          164 EGEQQ----------------------------------------------------------------------AWFGF  173 (444)
T ss_dssp             CTTCC----------------------------------------------------------------------BCCCS
T ss_pred             cCCCc----------------------------------------------------------------------eeecc
Confidence            32111                                                                      01134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~  396 (457)
                      +||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.........+..+.+.++..  ..+++++++||.+||+
T Consensus       174 ~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  253 (444)
T 3soa_A          174 AGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLT  253 (444)
T ss_dssp             CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSC
T ss_pred             cCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999988888888888887766543  5789999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||++||+    +.|+|+||||+.
T Consensus       254 ~dP~~Rpt----a~e~L~hp~~~~  273 (444)
T 3soa_A          254 INPSKRIT----AAEALKHPWISH  273 (444)
T ss_dssp             SSTTTSCC----HHHHHHSCTTHH
T ss_pred             CChhHCCC----HHHHhcCccccC
Confidence            99999999    999999999964

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.3e-51  Score=402.86  Aligned_cols=264  Identities=30%  Similarity=0.442  Sum_probs=229.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||+|++.+......   .....+.+|+++|+.++||||+++++++...
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   86 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREK----STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK   86 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEET----TTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             cceEeceEEeeCCCeEEEEEEEC----CCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeC
Confidence            56999999999999999999986    4788999999976543221   1356788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFDL  234 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG~  234 (457)
                      +..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||+
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~  164 (326)
T 2y0a_A           87 TDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL  164 (326)
T ss_dssp             SEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred             CEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence            9999999999999999998764  6799999999999999999999999999999999999999887    899999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       165 a~~~~~~~~-----------------------------------------------------------------------  173 (326)
T 2y0a_A          165 AHKIDFGNE-----------------------------------------------------------------------  173 (326)
T ss_dssp             CEECCTTSC-----------------------------------------------------------------------
T ss_pred             CeECCCCCc-----------------------------------------------------------------------
Confidence            865431110                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~  392 (457)
                      ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+......+..+......++..  ..++..+.+||.
T Consensus       174 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  253 (326)
T 2y0a_A          174 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIR  253 (326)
T ss_dssp             CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHH
Confidence            012369999999999999999999999999999999999999999988877777777665555432  457899999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      +||..||++||+    +.|+|+||||+..+|...
T Consensus       254 ~~L~~dP~~Rpt----~~e~l~hp~~~~~~~~~~  283 (326)
T 2y0a_A          254 RLLVKDPKKRMT----IQDSLQHPWIKPKDTQQA  283 (326)
T ss_dssp             HHSCSSGGGSCC----HHHHHHSTTTSCCSHHHH
T ss_pred             HHccCChhhCCC----HHHHhcCCCccCCcchhh
Confidence            999999999999    999999999999888543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-51  Score=399.97  Aligned_cols=261  Identities=31%  Similarity=0.532  Sum_probs=218.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-----------------------hHHHHHH
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-----------------------NKESRAR  134 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-----------------------~~~~~~~  134 (457)
                      .+..++|++.+.||+|+||+||+|+++    .+++.||||++.+......                       .....+.
T Consensus         9 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (298)
T 2zv2_A            9 CVQLNQYTLKDEIGKGSYGVVKLAYNE----NDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVY   84 (298)
T ss_dssp             -CEETTEEEEEEEEC--CCEEEEEEET----TTTEEEEEEEEECC-------------------------------CHHH
T ss_pred             ceeecceEEEeEEeecCCEEEEEEEEC----CCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHH
Confidence            356689999999999999999999876    4789999999976543211                       1235678


Q ss_pred             HHHHHHHHcCCCCCceEEEEEEc--CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 012762          135 IEREILEMLDHPFLPTLYATLDC--PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYR  212 (457)
Q Consensus       135 ~E~~il~~l~H~nIv~l~~~~~~--~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHr  212 (457)
                      +|+++|+.++||||+++++++..  .+.+||||||+++++|.+++.   ...+++..++.++.||+.||.|||++||+||
T Consensus        85 ~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~  161 (298)
T 2zv2_A           85 QEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT---LKPLSEDQARFYFQDLIKGIEYLHYQKIIHR  161 (298)
T ss_dssp             HHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC---SSCCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHCCeecc
Confidence            89999999999999999999986  568899999999999977543   3579999999999999999999999999999


Q ss_pred             cCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcch
Q 012762          213 DLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR  292 (457)
Q Consensus       213 DIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      ||||+|||++.++.+||+|||++........                                                 
T Consensus       162 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-------------------------------------------------  192 (298)
T 2zv2_A          162 DIKPSNLLVGEDGHIKIADFGVSNEFKGSDA-------------------------------------------------  192 (298)
T ss_dssp             CCCGGGEEECTTSCEEECCCTTCEECSSSSC-------------------------------------------------
T ss_pred             CCCHHHEEECCCCCEEEecCCCccccccccc-------------------------------------------------
Confidence            9999999999999999999999865432110                                                 


Q ss_pred             hccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC---CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH
Q 012762          293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG---HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN  369 (457)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~---~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~  369 (457)
                                           ......||+.|+|||++.+..   ++.++|||||||++|+|++|+.||.+.........
T Consensus       193 ---------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~  251 (298)
T 2zv2_A          193 ---------------------LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSK  251 (298)
T ss_dssp             ---------------------EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH
T ss_pred             ---------------------cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHH
Confidence                                 011236999999999998765   37889999999999999999999998877777777


Q ss_pred             HHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          370 VVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      +......++....+++++.+||.+||..||++||+    +.||++||||+
T Consensus       252 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s----~~e~l~hp~~~  297 (298)
T 2zv2_A          252 IKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIV----VPEIKLHPWVT  297 (298)
T ss_dssp             HHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCC----HHHHTTCHHHH
T ss_pred             HhcccCCCCCccccCHHHHHHHHHHhhcChhhCCC----HHHHhcCcccc
Confidence            77777777777789999999999999999999999    99999999985

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=3.2e-51  Score=412.55  Aligned_cols=277  Identities=20%  Similarity=0.311  Sum_probs=223.1

Q ss_pred             CCccCCCceeEEEeccc--CcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSG--DIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G--~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      .....++|+++++||+|  +||+||+|+++    .+++.||||++..... .......+.+|+++|+.++|||||+++++
T Consensus        20 ~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~   94 (389)
T 3gni_B           20 FLPEGGCYELLTVIGKGFEDLMTVNLARYK----PTGEYVTVRRINLEAC-SNEMVTFLQGELHVSKLFNHPNIVPYRAT   94 (389)
T ss_dssp             CCCCGGGEEEEEEEEEETTTTEEEEEEEET----TTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccCCCCcEEEEecccCCcCCceEEEEEEEc----CCCCEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCCCcEeEE
Confidence            34466789999999999  99999999987    4789999999987643 23456678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +..++.+|+|||||++++|.+++.......+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~  174 (389)
T 3gni_B           95 FIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRS  174 (389)
T ss_dssp             EEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGG
T ss_pred             EEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEccccc
Confidence            99999999999999999999999887667799999999999999999999999999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +............                                                               ....
T Consensus       175 ~~~~~~~~~~~~~---------------------------------------------------------------~~~~  191 (389)
T 3gni_B          175 NLSMISHGQRQRV---------------------------------------------------------------VHDF  191 (389)
T ss_dssp             CEECEETTEECSC---------------------------------------------------------------BCCC
T ss_pred             ceeeccccccccc---------------------------------------------------------------cccc
Confidence            7544211110000                                                               0000


Q ss_pred             cccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC----------------
Q 012762          315 SMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE----------------  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~----------------  376 (457)
                      ....+||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+......+..++.....                
T Consensus       192 ~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (389)
T 3gni_B          192 PKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMS  271 (389)
T ss_dssp             CTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------------------
T ss_pred             cccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccccccccccccc
Confidence            112369999999999988  57899999999999999999999999886655544443322211                


Q ss_pred             ----------------------------CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          377 ----------------------------FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       377 ----------------------------~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                                                  .+....+++++.+||.+||+.||++||+    +.|+|+||||+.+.|..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt----a~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          272 PSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPS----ASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             ----------------------------------CCHHHHHHHHHHTCSCTTTSCC----HHHHTTSGGGGGC---C
T ss_pred             ccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCC----HHHHhcCHHHHHHhhcc
Confidence                                        0122346788999999999999999999    99999999999988743

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=3.9e-51  Score=408.19  Aligned_cols=257  Identities=26%  Similarity=0.464  Sum_probs=225.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||+|++...... ......+.+|+++|+.++||||+++++++.+.+..
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~  103 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHK----TTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFH  103 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             cCeEEeeEEecCCCeEEEEEEEC----CCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence            57999999999999999999986    47889999999865432 23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DFG~s~~~  238 (457)
                      |+||||+.|++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++...
T Consensus       104 ~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~  181 (362)
T 2bdw_A          104 YLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV  181 (362)
T ss_dssp             EEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred             EEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence            9999999999998887664  679999999999999999999999999999999999999865   45999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       182 ~~~~~-----------------------------------------------------------------------~~~~  190 (362)
T 2bdw_A          182 NDSEA-----------------------------------------------------------------------WHGF  190 (362)
T ss_dssp             TTCCS-----------------------------------------------------------------------CCCS
T ss_pred             cCCcc-----------------------------------------------------------------------cccC
Confidence            32110                                                                       1134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~  396 (457)
                      +||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+.......+..+.+.++..  ..+++++++||.+||.
T Consensus       191 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~  270 (362)
T 2bdw_A          191 AGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLT  270 (362)
T ss_dssp             CSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSC
T ss_pred             CCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999988888888888877766543  4678999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||++||+    +.++|+||||..
T Consensus       271 ~dP~~R~t----~~e~l~hp~~~~  290 (362)
T 2bdw_A          271 VNPKKRIT----ADQALKVPWICN  290 (362)
T ss_dssp             SSGGGSCC----HHHHTTSHHHHT
T ss_pred             CChhhCcC----HHHHhcCcccCC
Confidence            99999999    999999999975

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.3e-52  Score=410.05  Aligned_cols=258  Identities=28%  Similarity=0.451  Sum_probs=221.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|++.+.||+|+||+||+|.+.    .+++.||+|++.+...........+.+|+++|+.++||||+++++++...
T Consensus         6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~   81 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFGKVKLATHY----KTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP   81 (336)
T ss_dssp             SEETTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC
Confidence            34578999999999999999999986    47889999999877655545556788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||+ +|+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        82 ~~~~lv~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~  158 (336)
T 3h4j_B           82 TDIVMVIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIM  158 (336)
T ss_dssp             SEEEEEECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTT
T ss_pred             CEEEEEEECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceec
Confidence            9999999999 78888877664  67999999999999999999999999999999999999999999999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       159 ~~~~~-----------------------------------------------------------------------~~~~  167 (336)
T 3h4j_B          159 TDGNF-----------------------------------------------------------------------LKTS  167 (336)
T ss_dssp             TTSBT-----------------------------------------------------------------------TCCC
T ss_pred             cCCcc-----------------------------------------------------------------------cccc
Confidence            32110                                                                       1134


Q ss_pred             cCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      +||+.|+|||++.+..+ +.++|||||||++|+|++|+.||.+.........+.......|  ..+++++.+||.+||..
T Consensus       168 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p--~~~s~~~~~li~~~L~~  245 (336)
T 3h4j_B          168 CGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMP--DFLSPGAQSLIRRMIVA  245 (336)
T ss_dssp             TTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCC--TTSCHHHHHHHHTTSCS
T ss_pred             cCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCc--ccCCHHHHHHHHHHcCC
Confidence            69999999999998876 7899999999999999999999987655444433333333333  34889999999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||.+|||    ++||++||||+.
T Consensus       246 dP~~Rpt----~~eil~hp~~~~  264 (336)
T 3h4j_B          246 DPMQRIT----IQEIRRDPWFNV  264 (336)
T ss_dssp             SGGGSCC----HHHHTTCHHHHT
T ss_pred             ChhHCcC----HHHHHhChhhcc
Confidence            9999999    999999999985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-51  Score=407.10  Aligned_cols=293  Identities=37%  Similarity=0.680  Sum_probs=233.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      ..+..++|++++.||+|+||+||+|++.. ...+++.||||++++..... ......+.+|+++|+++ +||||++++++
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~  127 (355)
T 1vzo_A           49 EKVGIENFELLKVLGTGAYGKVFLVRKIS-GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYA  127 (355)
T ss_dssp             CCCCGGGEEEEEEEEETTTEEEEEEEECS-STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEE
T ss_pred             ccccccceEEEEEeccCCCEEEEEEEEcc-cCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEE
Confidence            34566799999999999999999999753 23478999999997543211 12234456799999999 79999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+.+||||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+
T Consensus       128 ~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~  205 (355)
T 1vzo_A          128 FQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL  205 (355)
T ss_dssp             EEETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             EeeCceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCC
Confidence            99999999999999999999998775  5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++......                                                                     ...
T Consensus       206 a~~~~~~~---------------------------------------------------------------------~~~  216 (355)
T 1vzo_A          206 SKEFVADE---------------------------------------------------------------------TER  216 (355)
T ss_dssp             EEECCGGG---------------------------------------------------------------------GGG
T ss_pred             CeecccCC---------------------------------------------------------------------CCc
Confidence            86443111                                                                     011


Q ss_pred             cccccCCCCccCchhhcCC--CCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHH
Q 012762          315 SMSFVGTHEYLAPEIISGE--GHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~--~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                      ...++||+.|+|||++.+.  .++.++|||||||++|||++|+.||.....    ......+......++  ..++..+.
T Consensus       217 ~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  294 (355)
T 1vzo_A          217 AYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP--QEMSALAK  294 (355)
T ss_dssp             GCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCC--TTSCHHHH
T ss_pred             ccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCC--cccCHHHH
Confidence            1235799999999999863  478999999999999999999999975432    233334443333333  45889999


Q ss_pred             HHHHHHhhhCCCCCCCCC-cChHHHhcCCCCCCCCchhhh--ccCCCCCCCCCCcccc
Q 012762          389 DLIAQLLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALLR--CAKPPFIPRPVTCRDL  443 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~~--~~~~~~~~~~~~~~~~  443 (457)
                      +||.+||..||.+||+.. ..++++++||||+.++|..+.  ...+||.|......|.
T Consensus       295 ~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p~~p~~~~~~d~  352 (355)
T 1vzo_A          295 DLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDV  352 (355)
T ss_dssp             HHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-CCC
T ss_pred             HHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhccCCCCCCCcccccccc
Confidence            999999999999999211 019999999999999998774  4557888876555443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.3e-50  Score=391.75  Aligned_cols=259  Identities=23%  Similarity=0.353  Sum_probs=211.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|+++    .+++.||+|++..... .......+.+|+++++.++||||+++++++.+++.
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   75 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNR----ETHEIVALKRVRLDDD-DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK   75 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEESSCS-STTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTE
T ss_pred             CCCceeeeEecCCCCeEEEEEEEC----CCCceEEEEeeeccCC-cCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCE
Confidence            368999999999999999999987    4788999999976542 33345677889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++ +|...+... .+.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus        76 ~~lv~e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  153 (292)
T 3o0g_A           76 LTLVFEFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             EEEEEECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred             EEEEEecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence            9999999965 555554442 36799999999999999999999999999999999999999999999999999865431


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       154 ~~~----------------------------------------------------------------------~~~~~~~  163 (292)
T 3o0g_A          154 PVR----------------------------------------------------------------------CYSAEVV  163 (292)
T ss_dssp             CCS----------------------------------------------------------------------CCCSCCS
T ss_pred             ccc----------------------------------------------------------------------cccCCcc
Confidence            110                                                                      0112368


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCC-CCCChHHHHHHHHhcccCCC--------------------
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPF-KGIDHELTLANVVARALEFP--------------------  378 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf-~~~~~~~~~~~~~~~~~~~~--------------------  378 (457)
                      |+.|+|||++.+.. ++.++|||||||++|+|++|..|| .+......+..+........                    
T Consensus       164 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (292)
T 3o0g_A          164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYP  243 (292)
T ss_dssp             CGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCC
T ss_pred             ccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccccccccccc
Confidence            99999999998776 799999999999999999887774 55555555555543211111                    


Q ss_pred             -------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 -------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 -------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                             ..+.++.++++||.+||+.||++|||    ++|+++||||++
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~  288 (292)
T 3o0g_A          244 ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS----AEEALQHPYFSD  288 (292)
T ss_dssp             TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTT
T ss_pred             CCcchhhcccccChHHHHHHHHHhccChhhCCC----HHHHhcCccccc
Confidence                   11246788999999999999999999    999999999985

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=5.7e-51  Score=405.28  Aligned_cols=263  Identities=25%  Similarity=0.418  Sum_probs=221.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh--hHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~--~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||||++........  .....+.+|+++|+.++||||+++++++..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~   99 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINR----ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDG   99 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT
T ss_pred             cceEEeeEEeeCCCEEEEEEEEC----CCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            57999999999999999999886    4789999999987654322  13567888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC---EEEeccCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFDL  234 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~---vkl~DFG~  234 (457)
                      .+|||||||+|++|..++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||+
T Consensus       100 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~  179 (351)
T 3c0i_A          100 MLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGV  179 (351)
T ss_dssp             EEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred             EEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcc
Confidence            999999999999997766542  2346899999999999999999999999999999999999987654   99999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                      .
T Consensus       180 a~~~~~~~~----------------------------------------------------------------------~  189 (351)
T 3c0i_A          180 AIQLGESGL----------------------------------------------------------------------V  189 (351)
T ss_dssp             CEECCTTSC----------------------------------------------------------------------B
T ss_pred             eeEecCCCe----------------------------------------------------------------------e
Confidence            865432110                                                                      0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~  392 (457)
                      ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+. .......+....+..+.  ...++.++++||.
T Consensus       190 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  268 (351)
T 3c0i_A          190 AGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-KERLFEGIIKGKYKMNPRQWSHISESAKDLVR  268 (351)
T ss_dssp             CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-HHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             ecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHcCCCCCCccccccCCHHHHHHHH
Confidence            11346999999999999999999999999999999999999999874 44556666666554432  2458899999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      +||..||++||+    +.++++||||+..++
T Consensus       269 ~~L~~dP~~R~s----~~e~l~hp~~~~~~~  295 (351)
T 3c0i_A          269 RMLMLDPAERIT----VYEALNHPWLKERDR  295 (351)
T ss_dssp             HHTCSSTTTSCC----HHHHHTSHHHHTHHH
T ss_pred             HHCCCChhHCcC----HHHHhcChhhcCCcc
Confidence            999999999999    999999999987543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.9e-51  Score=419.04  Aligned_cols=263  Identities=25%  Similarity=0.446  Sum_probs=232.8

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|.+.+.||+|+||+||+|+++    .+|+.||||++.+...........+.+|+++|+.++||||++++++
T Consensus         9 ~~~~~~~~~Y~l~~~LG~G~fg~V~~a~~~----~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~   84 (476)
T 2y94_A            9 HDGRVKIGHYILGDTLGVGTFGKVKVGKHE----LTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQV   84 (476)
T ss_dssp             CCSCCEETTEEEEEEEECCSSSCEEEEEET----TTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             cCCCceecCEEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            345677889999999999999999999986    4789999999988766555566788899999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+.+||||||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        85 ~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~  162 (476)
T 2y94_A           85 ISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGL  162 (476)
T ss_dssp             EECSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSS
T ss_pred             EEECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccc
Confidence            99999999999999999999988654  6799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       163 a~~~~~~~~-----------------------------------------------------------------------  171 (476)
T 2y94_A          163 SNMMSDGEF-----------------------------------------------------------------------  171 (476)
T ss_dssp             CEECCTTCC-----------------------------------------------------------------------
T ss_pred             hhhcccccc-----------------------------------------------------------------------
Confidence            865432110                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ..+.+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+.........+..+.+..+.  .+++++.+||.+
T Consensus       172 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~Li~~  249 (476)
T 2y94_A          172 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQ--YLNPSVISLLKH  249 (476)
T ss_dssp             BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCT--TCCHHHHHHHHH
T ss_pred             ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCc--cCCHHHHHHHHH
Confidence            113469999999999998876 78999999999999999999999998888888888777666554  488999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||..||.+||+    +.||++||||+.
T Consensus       250 ~L~~dP~~Rpt----~~eil~hp~~~~  272 (476)
T 2y94_A          250 MLQVDPMKRAT----IKDIREHEWFKQ  272 (476)
T ss_dssp             HTCSSTTTSCC----HHHHHTCHHHHT
T ss_pred             HcCCCchhCcC----HHHHHhCHHhhh
Confidence            99999999999    999999999985

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-51  Score=401.39  Aligned_cols=257  Identities=22%  Similarity=0.353  Sum_probs=226.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||+|+||+||+|.++    .+++.||+|++....    .....+.+|+++|+.++||||+++++++.+.+.
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~----~~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~   75 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVET----SSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTE
T ss_pred             hhceEeeeEEecCCCeEEEEEEEC----CCCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCE
Confidence            468999999999999999999986    478999999986432    344567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc--CCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~~  238 (457)
                      +|+|||||+|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.  ++.+||+|||++...
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~  154 (321)
T 1tki_A           76 LVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             EEEEEEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeEC
Confidence            99999999999999888653 346999999999999999999999999999999999999987  789999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       155 ~~~~~-----------------------------------------------------------------------~~~~  163 (321)
T 1tki_A          155 KPGDN-----------------------------------------------------------------------FRLL  163 (321)
T ss_dssp             CTTCE-----------------------------------------------------------------------EEEE
T ss_pred             CCCCc-----------------------------------------------------------------------cccc
Confidence            32111                                                                       1134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||.+......+..+....+.++.  ...++.++.+||.+||.
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  243 (321)
T 1tki_A          164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLV  243 (321)
T ss_dssp             ESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSC
T ss_pred             cCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcC
Confidence            6999999999999988999999999999999999999999998888888888887766653  24689999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .||.+||+    +.|+|+||||+..
T Consensus       244 ~dp~~Rpt----~~e~l~hp~~~~~  264 (321)
T 1tki_A          244 KERKSRMT----ASEALQHPWLKQK  264 (321)
T ss_dssp             SSGGGSCC----HHHHHHSHHHHSC
T ss_pred             CChhHCcC----HHHHhcChhhccC
Confidence            99999999    9999999999864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.1e-50  Score=389.70  Aligned_cols=260  Identities=32%  Similarity=0.532  Sum_probs=229.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||+||+|.++    .++..||+|++.+...........+.+|+++++.++||||+++++++.
T Consensus         4 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   79 (279)
T 3fdn_A            4 RQWALEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH   79 (279)
T ss_dssp             CCCCGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             ceeecccEEEeeEEecCCCeEEEEEEEc----cCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe
Confidence            3566789999999999999999999886    478899999998876655556778889999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +.+..|+||||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        80 ~~~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~  157 (279)
T 3fdn_A           80 DATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSV  157 (279)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEES
T ss_pred             cCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccc
Confidence            999999999999999999888765  569999999999999999999999999999999999999999999999999874


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                        ..
T Consensus       158 ~~~~~~------------------------------------------------------------------------~~  165 (279)
T 3fdn_A          158 HAPSSR------------------------------------------------------------------------RT  165 (279)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             cCCccc------------------------------------------------------------------------cc
Confidence            332110                                                                        11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||...........+......++.  .++.++.+||.+||.
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~  243 (279)
T 3fdn_A          166 DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD--FVTEGARDLISRLLK  243 (279)
T ss_dssp             --CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCT--TSCHHHHHHHHHHCC
T ss_pred             ccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCC--cCCHHHHHHHHHHhc
Confidence            236899999999999999999999999999999999999999998887777777766665554  488999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||.+||+    +.||++||||+.
T Consensus       244 ~~p~~Rps----~~e~l~h~~~~~  263 (279)
T 3fdn_A          244 HNPSQRPM----LREVLEHPWITA  263 (279)
T ss_dssp             SSGGGSCC----HHHHHHCHHHHH
T ss_pred             cChhhCCC----HHHHhhCccccC
Confidence            99999999    999999999985

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2e-50  Score=388.77  Aligned_cols=272  Identities=32%  Similarity=0.539  Sum_probs=233.3

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||+||+|.+.    .+++.||+|++.+...........+.+|+++++.++||||+++++++.
T Consensus         9 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   84 (284)
T 2vgo_A            9 RKFTIDDFDIGRPLGKGKFGNVYLAREK----QNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH   84 (284)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             cchhhhhceeeheecCCCCeEEEEEEEc----CCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE
Confidence            4566789999999999999999999976    478899999998776555555677889999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.
T Consensus        85 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  162 (284)
T 2vgo_A           85 DRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSV  162 (284)
T ss_dssp             CSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             cCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccc
Confidence            999999999999999999888775  569999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                        ..
T Consensus       163 ~~~~~~------------------------------------------------------------------------~~  170 (284)
T 2vgo_A          163 HAPSLR------------------------------------------------------------------------RR  170 (284)
T ss_dssp             ECSSSC------------------------------------------------------------------------BC
T ss_pred             cCcccc------------------------------------------------------------------------cc
Confidence            432110                                                                        01


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ...|++.|+|||++.+..++.++|||||||++|+|++|..||...........+......++.  .++.++.++|.+||.
T Consensus       171 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~  248 (284)
T 2vgo_A          171 TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPP--FLSDGSKDLISKLLR  248 (284)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT--TSCHHHHHHHHHHSC
T ss_pred             cccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCC--cCCHHHHHHHHHHhh
Confidence            235899999999999999999999999999999999999999988877777777766655553  488999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR  436 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~~~  436 (457)
                      .||.+||+    +.++++||||+...    +...||..+.
T Consensus       249 ~~p~~Rps----~~~ll~h~~~~~~~----~~~~p~~~~~  280 (284)
T 2vgo_A          249 YHPPQRLP----LKGVMEHPWVKANS----RRVLPPVYQS  280 (284)
T ss_dssp             SSGGGSCC----HHHHHTCHHHHHHC----CCCCCCCC--
T ss_pred             cCHhhCCC----HHHHhhCHHHHhhc----cccCCCcccc
Confidence            99999999    99999999998432    2334554443

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=7.1e-51  Score=400.01  Aligned_cols=261  Identities=23%  Similarity=0.392  Sum_probs=217.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++++.||+|+||+||+|.++    .+++.||+|++.....  ......+.+|+++++.++||||+++++++..++.
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~   79 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNI   79 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhceeeeEEecCCCEEEEEEEEC----CCCcEEEEEEEEcccc--cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCe
Confidence            478999999999999999999886    4788999999965432  1233567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+|||||++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  157 (323)
T 3tki_A           80 QYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (323)
T ss_dssp             EEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             EEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceecc
Confidence            99999999999998887654  5799999999999999999999999999999999999999999999999999864421


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                    ......+|
T Consensus       158 ~~~~--------------------------------------------------------------------~~~~~~~g  169 (323)
T 3tki_A          158 NNRE--------------------------------------------------------------------RLLNKMCG  169 (323)
T ss_dssp             TTEE--------------------------------------------------------------------CCBCSCCS
T ss_pred             CCcc--------------------------------------------------------------------cccCCCcc
Confidence            1100                                                                    01113469


Q ss_pred             CCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          321 THEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       321 t~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      |+.|+|||++.+..+ +.++|||||||++|+|++|+.||...... .............+....++..+.+||.+||..|
T Consensus       170 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  249 (323)
T 3tki_A          170 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVEN  249 (323)
T ss_dssp             CGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSS
T ss_pred             CcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCC
Confidence            999999999988775 78999999999999999999999876554 3334444444444444568899999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |++||+    +.|+++||||+..
T Consensus       250 P~~R~t----~~eil~h~~~~~~  268 (323)
T 3tki_A          250 PSARIT----IPDIKKDRWYNKP  268 (323)
T ss_dssp             TTTSCC----HHHHTTCTTTTCC
T ss_pred             hhhCcC----HHHHhhChhhccc
Confidence            999999    9999999999864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-50  Score=390.95  Aligned_cols=263  Identities=25%  Similarity=0.356  Sum_probs=213.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh--hhHHHHHHHHHHHHHHc---CCCCCceEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS--RNKESRARIEREILEML---DHPFLPTLYA  153 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~--~~~~~~~~~E~~il~~l---~H~nIv~l~~  153 (457)
                      +..++|+++++||+|+||+||+|+++    .+++.||+|++.......  ......+.+|+++++.+   +||||+++++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~   81 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDP----HSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMD   81 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECT----TTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeee
Confidence            44578999999999999999999876    478999999997532111  11123455677777666   5999999999


Q ss_pred             EEEcCC-----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          154 TLDCPR-----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       154 ~~~~~~-----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      ++....     ..++||||+. ++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.+|
T Consensus        82 ~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~k  160 (308)
T 3g33_A           82 VCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVK  160 (308)
T ss_dssp             EEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEE
T ss_pred             eeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEE
Confidence            997765     5799999995 6999999887666699999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+++.......                                                                 
T Consensus       161 l~Dfg~a~~~~~~~~-----------------------------------------------------------------  175 (308)
T 3g33_A          161 LADFGLARIYSYQMA-----------------------------------------------------------------  175 (308)
T ss_dssp             ECSCSCTTTSTTCCC-----------------------------------------------------------------
T ss_pred             EeeCccccccCCCcc-----------------------------------------------------------------
Confidence            999999865432111                                                                 


Q ss_pred             cCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---------
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---------  379 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---------  379 (457)
                            ....+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..+.......+.         
T Consensus       176 ------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  249 (308)
T 3g33_A          176 ------LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSL  249 (308)
T ss_dssp             ------SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSS
T ss_pred             ------cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhc
Confidence                  11346999999999999999999999999999999999999999998887777776653222111         


Q ss_pred             ----------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          380 ----------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       380 ----------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                      .+.+++++.+||.+||+.||++|||    +.|+|+||||+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~h~~~~~~  303 (308)
T 3g33_A          250 PRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRIS----AFRALQHSYLHKD  303 (308)
T ss_dssp             CGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSTTC---
T ss_pred             cccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCC----HHHHhcCccccCC
Confidence                            1246788999999999999999999    9999999999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-50  Score=413.62  Aligned_cols=293  Identities=24%  Similarity=0.296  Sum_probs=204.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc---
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC---  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~---  157 (457)
                      .++|++++.||+|+||+||+|+++    .+++.||||++.+. ........++.+|+++|+.++||||+++++++..   
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~i~~~-~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~  126 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDK----LEKRVVAIKKILRV-FEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDV  126 (458)
T ss_dssp             CTTEEECCC-------CEEEEEEC----C--CEEEEEEECST-TSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCT
T ss_pred             CCCeEEeeEeeecCCeEEEEEEEC----CCCcEEEEEEechh-hcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCc
Confidence            368999999999999999999987    47889999999653 2233455778889999999999999999999943   


Q ss_pred             --CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          158 --PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       158 --~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                        ...+||||||+ +++|..++...  ..+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||++
T Consensus       127 ~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla  203 (458)
T 3rp9_A          127 EKFDELYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLA  203 (458)
T ss_dssp             TTCCCEEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ccCceEEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccc
Confidence              35789999998 78998888764  67999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +...............        .                              ... ...+.+++    .........
T Consensus       204 ~~~~~~~~~~~~~~~~--------~------------------------------~~~-~~~~~~~~----~~~~~~~~~  240 (458)
T 3rp9_A          204 RTVDYPENGNSQLPIS--------P------------------------------RED-DMNLVTFP----HTKNLKRQL  240 (458)
T ss_dssp             BCTTSCTTCCCCCC------------------------------------------------------------------
T ss_pred             hhccCccccccccccC--------c------------------------------ccc-cccccccc----ccccccccc
Confidence            7664322111000000        0                              000 00000000    000011223


Q ss_pred             ccccCCCCccCchhh-cCCCCCccchhhhhhHHHHHHhc-----------CCCCCCCCCh--------------------
Q 012762          316 MSFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFY-----------GTTPFKGIDH--------------------  363 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l-~~~~~~~~sDiwSlG~il~ellt-----------G~~Pf~~~~~--------------------  363 (457)
                      ...+||+.|+|||++ .+..|+.++|||||||+||||++           |+++|.+...                    
T Consensus       241 ~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~  320 (458)
T 3rp9_A          241 TGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGN  320 (458)
T ss_dssp             ----CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHH
T ss_pred             cCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCC
Confidence            356899999999987 45669999999999999999998           7777766431                    


Q ss_pred             HHHHHHHHhccc--------------------CCC---------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          364 ELTLANVVARAL--------------------EFP---------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       364 ~~~~~~~~~~~~--------------------~~~---------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ...+..+.....                    .++         ..+.++.++.+||.+||..||++|||    ++|+|+
T Consensus       321 ~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----~~e~L~  396 (458)
T 3rp9_A          321 RDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRIT----INECLA  396 (458)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCC----HHHHhc
Confidence            111222211100                    000         12346889999999999999999999    999999


Q ss_pred             CCCCCCCCchhhhc
Q 012762          415 HQFFNGVNWALLRC  428 (457)
Q Consensus       415 hp~f~~~~~~~~~~  428 (457)
                      ||||+.++|.....
T Consensus       397 Hp~f~~~~~~~~e~  410 (458)
T 3rp9_A          397 HPFFKEVRIAEVET  410 (458)
T ss_dssp             SGGGTTTCCGGGCC
T ss_pred             CHhhhhcCCCccCC
Confidence            99999999976643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.9e-50  Score=390.00  Aligned_cols=260  Identities=23%  Similarity=0.354  Sum_probs=213.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|++++.||+|+||+||+|++.     +++.||+|++..... .......+.+|+++|+.++||||+++++++...+.
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~aiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   74 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQNN-----YGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR   74 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-----TSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSC
T ss_pred             CccchhhhhcccCCCEEEEEEEcC-----CCCEEEEEEEecccc-ccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCe
Confidence            368999999999999999999873     688999999965432 22234567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||++ ++|..++... .+.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        75 ~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  152 (288)
T 1ob3_A           75 LVLVFEHLD-QDLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI  152 (288)
T ss_dssp             EEEEEECCS-EEHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC
T ss_pred             EEEEEEecC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCc
Confidence            999999995 5898888764 36799999999999999999999999999999999999999999999999999754321


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       153 ~~~----------------------------------------------------------------------~~~~~~~  162 (288)
T 1ob3_A          153 PVR----------------------------------------------------------------------KYTHEIV  162 (288)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ccc----------------------------------------------------------------------ccccccc
Confidence            100                                                                      0112358


Q ss_pred             CCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------------
Q 012762          321 THEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------------  378 (457)
Q Consensus       321 t~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------------  378 (457)
                      |+.|+|||++.+. .++.++|||||||++|||++|..||.+......+..+.......+                     
T Consensus       163 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (288)
T 1ob3_A          163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE  242 (288)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             cccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccccccccc
Confidence            9999999999875 489999999999999999999999999887766666554211100                     


Q ss_pred             ------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          379 ------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       379 ------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                            ....++.++.+||.+||+.||++||+    +.|+++||||+..+
T Consensus       243 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~n  288 (288)
T 1ob3_A          243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRIT----AKQALEHAYFKENN  288 (288)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGGC--
T ss_pred             CccHHHHhhhcCHHHHHHHHHHcCCCcccCCC----HHHHhcCcchhhcC
Confidence                  01246788999999999999999999    99999999998653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.9e-50  Score=399.91  Aligned_cols=258  Identities=28%  Similarity=0.418  Sum_probs=209.2

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|+++    .+++.||||++....     ....+.+|+++|++++||||+++++++...+
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~----~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~  121 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQK----GTQKPYALKVLKKTV-----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPT  121 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSS
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEEC----CCCcEEEEEEeccch-----hHHHHHHHHHHHHhCCCCCCcceeeeEecCC
Confidence            3467999999999999999999986    378899999997542     3456778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~DFG~s~  236 (457)
                      ..|+||||+++++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++
T Consensus       122 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~  199 (349)
T 2w4o_A          122 EISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK  199 (349)
T ss_dssp             EEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC---
T ss_pred             eEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCcccc
Confidence            999999999999999888764  66999999999999999999999999999999999999975   7899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                       ..
T Consensus       200 ~~~~~~~-----------------------------------------------------------------------~~  208 (349)
T 2w4o_A          200 IVEHQVL-----------------------------------------------------------------------MK  208 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCcccc-----------------------------------------------------------------------cc
Confidence            4431100                                                                       11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCCCC--CCCCChHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFPK--EPSVPGPAKDLIAQ  393 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~ll~~  393 (457)
                      ..+||+.|+|||++.+..++.++|||||||++|||++|..||.+..... .+..+......++.  ...++.++.+||.+
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  288 (349)
T 2w4o_A          209 TVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRK  288 (349)
T ss_dssp             ----CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHT
T ss_pred             cccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHH
Confidence            2469999999999999999999999999999999999999998766544 55556655544432  35688999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      ||..||++||+    +.|+++||||++..+
T Consensus       289 ~L~~dP~~Rpt----~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          289 LIVLDPKKRLT----TFQALQHPWVTGKAA  314 (349)
T ss_dssp             TSCSSGGGSCC----HHHHHHSTTTTSTTC
T ss_pred             HccCChhhCcC----HHHHhcCcccCCCcc
Confidence            99999999999    999999999997654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.2e-49  Score=383.06  Aligned_cols=265  Identities=26%  Similarity=0.445  Sum_probs=230.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||+|+||+||+|.++    .+++.||+|++..... .......+.+|++++++++||||+++++++...+.
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   79 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHK----TTGLEFAAKIINTKKL-SARDFQKLEREARICRKLQHPNIVRLHDSIQEESF   79 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEc----CCCceEEEEEeecccC-CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCE
Confidence            368999999999999999999987    4788999999976643 23345677889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC---EEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~---vkl~DFG~s~~  237 (457)
                      .|+||||+++++|...+...  ..+++..+..++.||+.||.|||++||+||||||+|||++.++.   +||+|||++..
T Consensus        80 ~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~  157 (284)
T 3kk8_A           80 HYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  157 (284)
T ss_dssp             EEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence            99999999999998877765  66999999999999999999999999999999999999986655   99999999854


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                       ...
T Consensus       158 ~~~~~~-----------------------------------------------------------------------~~~  166 (284)
T 3kk8_A          158 VNDSEA-----------------------------------------------------------------------WHG  166 (284)
T ss_dssp             CCSSCB-----------------------------------------------------------------------CCC
T ss_pred             cccCcc-----------------------------------------------------------------------ccC
Confidence            432111                                                                       112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L  395 (457)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|..||.+.........+.......+..  ..+++++.+||.+||
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  246 (284)
T 3kk8_A          167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSML  246 (284)
T ss_dssp             SCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHS
T ss_pred             CCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHc
Confidence            469999999999999999999999999999999999999999988888888877776665543  468899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      +.||++||+    +.|+++||||+..++....
T Consensus       247 ~~dp~~Rps----~~~~l~h~~~~~~~~~~~~  274 (284)
T 3kk8_A          247 TVNPKKRIT----ADQALKVPWICNRERVASA  274 (284)
T ss_dssp             CSSTTTSCC----HHHHTTSHHHHSCCCGGGS
T ss_pred             ccChhhCCC----HHHHhcCccccCChhHHhH
Confidence            999999999    9999999999987776543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=5.6e-51  Score=412.40  Aligned_cols=255  Identities=27%  Similarity=0.387  Sum_probs=208.3

Q ss_pred             ccCCCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH-cCCCCCceEEEEEE
Q 012762           79 LTLSDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM-LDHPFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~-l~H~nIv~l~~~~~  156 (457)
                      ...++|.+. +.||+|+||+||+|.++    .+++.||||++...        ..+.+|++++.+ ++||||+++++++.
T Consensus        58 ~~~~~y~~~~~~LG~G~~g~V~~~~~~----~~~~~vAiK~~~~~--------~~~~~E~~~~~~~~~hp~iv~l~~~~~  125 (400)
T 1nxk_A           58 AIIDDYKVTSQVLGLGINGKVLQIFNK----RTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYE  125 (400)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEE
T ss_pred             cccccceeccceeeeccCeEEEEEEEC----CCCCEEEEEEeCcc--------hhHHHHHHHHHHhcCCCCcceEeEEEe
Confidence            345678887 78999999999999986    47899999999642        245668888744 58999999999987


Q ss_pred             c----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEE
Q 012762          157 C----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIML  229 (457)
Q Consensus       157 ~----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl  229 (457)
                      .    .+++|||||||+||+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||
T Consensus       126 ~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl  205 (400)
T 1nxk_A          126 NLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKL  205 (400)
T ss_dssp             EEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEE
T ss_pred             ecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEE
Confidence            5    567899999999999999998765567999999999999999999999999999999999999997   789999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||+++......                                                                   
T Consensus       206 ~DFG~a~~~~~~~-------------------------------------------------------------------  218 (400)
T 1nxk_A          206 TDFGFAKETTSHN-------------------------------------------------------------------  218 (400)
T ss_dssp             CCCTTCEECC----------------------------------------------------------------------
T ss_pred             EecccccccCCCC-------------------------------------------------------------------
Confidence            9999986443110                                                                   


Q ss_pred             CCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH----HHHHHHhcccCCCC--CCCC
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL----TLANVVARALEFPK--EPSV  383 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~----~~~~~~~~~~~~~~--~~~~  383 (457)
                          ...+.+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.....    ....+..+.+.++.  ...+
T Consensus       219 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  294 (400)
T 1nxk_A          219 ----SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV  294 (400)
T ss_dssp             ------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTS
T ss_pred             ----ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccC
Confidence                0113469999999999999999999999999999999999999998754322    44555555555543  3568


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.++.+||.+||..||++||+    +.||++||||..
T Consensus       295 s~~~~~li~~~L~~dP~~Rpt----~~eil~hp~~~~  327 (400)
T 1nxk_A          295 SEEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  327 (400)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             CHHHHHHHHHHCCCChhHCcC----HHHHhcCccccC
Confidence            999999999999999999999    999999999975

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.8e-50  Score=395.90  Aligned_cols=264  Identities=24%  Similarity=0.364  Sum_probs=205.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|.++    .+|+.||+|++....  .......+.+|+++|+.++||||+++++++..++.
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   77 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNK----TTGVYVALKEVKLDS--EEGTPSTAIREISLMKELKHENIVRLYDVIHTENK   77 (317)
T ss_dssp             ---------------CEEEEEECS----SSCCEEEEEEEECCS--TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTE
T ss_pred             ccceeEeeEECCCCCEEEEEEEEC----CCCcEEEEEEeeccc--ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCe
Confidence            468999999999999999999876    478999999997543  22234567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          161 SCLLTEFCPGGDLHVLRQRQP----DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~----~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .|+||||++ ++|.+++....    ...+++..++.++.||+.||.|||++||+||||||+|||++.+|.+||+|||+++
T Consensus        78 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  156 (317)
T 2pmi_A           78 LTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR  156 (317)
T ss_dssp             EEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCE
T ss_pred             EEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccce
Confidence            999999996 69988876532    2458999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                      ...
T Consensus       157 ~~~~~~~----------------------------------------------------------------------~~~  166 (317)
T 2pmi_A          157 AFGIPVN----------------------------------------------------------------------TFS  166 (317)
T ss_dssp             ETTSCCC----------------------------------------------------------------------CCC
T ss_pred             ecCCCcc----------------------------------------------------------------------cCC
Confidence            5431110                                                                      001


Q ss_pred             cccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC-----------------
Q 012762          317 SFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP-----------------  378 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-----------------  378 (457)
                      ..+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+......+..+.......+                 
T Consensus       167 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  246 (317)
T 2pmi_A          167 SEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNI  246 (317)
T ss_dssp             CCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTC
T ss_pred             CCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhccccc
Confidence            23589999999999874 589999999999999999999999999887776666654221110                 


Q ss_pred             ---------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          379 ---------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       379 ---------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                                     ....++.++.+||.+||+.||++||+    +.|+|+||||+...|..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~~  304 (317)
T 2pmi_A          247 QQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLS----AKQALHHPWFAEYYHHA  304 (317)
T ss_dssp             CCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGGGGCC--
T ss_pred             ccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCC----HHHHhCChhhhcccchh
Confidence                           01246788999999999999999999    99999999999877753

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=4.5e-50  Score=393.61  Aligned_cols=265  Identities=28%  Similarity=0.427  Sum_probs=229.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .++|++.+.||+|+||+||+|+++    .+|+.||+|++.+......   .....+.+|+++|+.++||||+++++++..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   86 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREK----STGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN   86 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hccEEEeeEeeecCCEEEEEEEEC----CCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec
Confidence            357999999999999999999986    4788999999976533221   135678889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFD  233 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG  233 (457)
                      .+..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.++    .+||+|||
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg  164 (321)
T 2a2a_A           87 RTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (321)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence            99999999999999999998764  6799999999999999999999999999999999999999887    79999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++........                                                                      
T Consensus       165 ~~~~~~~~~~----------------------------------------------------------------------  174 (321)
T 2a2a_A          165 LAHEIEDGVE----------------------------------------------------------------------  174 (321)
T ss_dssp             TCEECCTTCC----------------------------------------------------------------------
T ss_pred             cceecCcccc----------------------------------------------------------------------
Confidence            9865432110                                                                      


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLI  391 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll  391 (457)
                       .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.........+......++..  ..++..+.+||
T Consensus       175 -~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  253 (321)
T 2a2a_A          175 -FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFI  253 (321)
T ss_dssp             -CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHH
T ss_pred             -ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHH
Confidence             012359999999999999999999999999999999999999999988887777777665554421  45788999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      .+||..||++||+    +.|+++||||+.++|...
T Consensus       254 ~~~l~~dp~~Rps----~~e~l~hp~~~~~~~~~~  284 (321)
T 2a2a_A          254 RKLLVKETRKRLT----IQEALRHPWITPVDNQQA  284 (321)
T ss_dssp             HTTSCSSTTTSCC----HHHHHHSTTTSCSSHHHH
T ss_pred             HHHcCCChhhCcC----HHHHhcCccccCCCcccc
Confidence            9999999999999    999999999999988654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=3.9e-50  Score=400.77  Aligned_cols=257  Identities=25%  Similarity=0.430  Sum_probs=212.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|+++++||+|+||+||+|+++    .+++.||||++.+...    ....+.+|+.+++.++||||+++++++...
T Consensus        17 ~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~   88 (361)
T 3uc3_A           17 HDSDRYDFVKDIGSGNFGVARLMRDK----LTKELVAVKYIERGAA----IDENVQREIINHRSLRHPNIVRFKEVILTP   88 (361)
T ss_dssp             CCTTTEEEEEEESSSTTSSEEEEEET----TTCCEEEEEEEESSTT----SCHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEEC----CCCcEEEEEEEecCcc----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeC
Confidence            34578999999999999999999987    4788999999976432    234577899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC--EEEeccCCCc
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--IMLTDFDLSL  236 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~--vkl~DFG~s~  236 (457)
                      +.+|+||||+++++|..++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.  +||+|||+++
T Consensus        89 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A           89 THLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-
T ss_pred             CEEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccc
Confidence            9999999999999999888764  57999999999999999999999999999999999999987765  9999999975


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ......                                                                       ...
T Consensus       167 ~~~~~~-----------------------------------------------------------------------~~~  175 (361)
T 3uc3_A          167 SSVLHS-----------------------------------------------------------------------QPK  175 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccC-----------------------------------------------------------------------CCC
Confidence            322110                                                                       011


Q ss_pred             cccCCCCccCchhhcCCCCCcc-chhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNA-VDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~-sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                      ..+||+.|+|||++.+..+..+ +|||||||++|+|++|+.||.+...    ...+..+......++....++.++++||
T Consensus       176 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li  255 (361)
T 3uc3_A          176 STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLI  255 (361)
T ss_dssp             -----CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHH
T ss_pred             CCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHH
Confidence            3469999999999998887655 8999999999999999999987543    3445555666667777667899999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+||+.||++||+    +.||++||||..
T Consensus       256 ~~~L~~dP~~Rps----~~ell~hp~f~~  280 (361)
T 3uc3_A          256 SRIFVADPATRIS----IPEIKTHSWFLK  280 (361)
T ss_dssp             HHHSCSCTTTSCC----HHHHHTSHHHHT
T ss_pred             HHHccCChhHCcC----HHHHHhCcchhc
Confidence            9999999999999    999999999954

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.4e-50  Score=398.72  Aligned_cols=263  Identities=21%  Similarity=0.283  Sum_probs=212.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|+++++||+|+||+||+|+++    .+++.||||++..... .......+.+|+++|+.++||||+++++++..++
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  106 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDT----VTNETVAIKRIRLEHE-EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNH  106 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET----TTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETT
T ss_pred             chhhEEEEEEEEecCCeEEEEEEEC----CCCceEEEEEEccccc-ccccchhHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            3568999999999999999999876    4789999999975432 2233455678999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc-----cCCCEEEeccCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR-----SDGHIMLTDFDL  234 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~-----~~~~vkl~DFG~  234 (457)
                      ..||||||++ ++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++     .++.+||+|||+
T Consensus       107 ~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~  183 (329)
T 3gbz_A          107 RLHLIFEYAE-NDLKKYMDKN--PDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL  183 (329)
T ss_dssp             EEEEEEECCS-EEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred             EEEEEEecCC-CCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence            9999999996 5999988875  5699999999999999999999999999999999999995     445599999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.......                                                                      .
T Consensus       184 a~~~~~~~~----------------------------------------------------------------------~  193 (329)
T 3gbz_A          184 ARAFGIPIR----------------------------------------------------------------------Q  193 (329)
T ss_dssp             HHHHC---------------------------------------------------------------------------
T ss_pred             ccccCCccc----------------------------------------------------------------------c
Confidence            864421110                                                                      0


Q ss_pred             cccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-------------
Q 012762          315 SMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-------------  380 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-------------  380 (457)
                      ....+||+.|+|||++.+.. ++.++|||||||++|||++|..||.+......+..+.......+..             
T Consensus       194 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (329)
T 3gbz_A          194 FTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQ  273 (329)
T ss_dssp             ------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             cCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhh
Confidence            11235899999999998754 8999999999999999999999999988777776665532211110             


Q ss_pred             ---------------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          381 ---------------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       381 ---------------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                     ..+++++.+||.+||+.||++||+    +.|+|+||||++.+|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          274 SFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRIS----AKNALEHPYFSHNDFD  328 (329)
T ss_dssp             TCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGSSSCSC
T ss_pred             hhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCC----HHHHhCCcccCCCCCC
Confidence                           015688999999999999999999    9999999999999995

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.5e-50  Score=402.04  Aligned_cols=279  Identities=24%  Similarity=0.364  Sum_probs=209.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~  159 (457)
                      .++|++++.||+|+||+||+|.++    .+|+.||||++.+.. .......++.+|+.+|+.+. ||||+++++++...+
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~i~~~~-~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~   82 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDR----RTGEVVAVKKIFDAF-QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN   82 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEET----TTCCEEEEEEECC---CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT
T ss_pred             cCceEEEEEeeeCCCeEEEEEEEC----CCCCEEEEEEecccc-cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC
Confidence            468999999999999999999987    478999999986542 23345566778999999997 999999999997544


Q ss_pred             --cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                        .+|||||||+ ++|..++..   ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||+++.
T Consensus        83 ~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  158 (388)
T 3oz6_A           83 DRDVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRS  158 (388)
T ss_dssp             SSCEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCEEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence              7899999995 689888876   5699999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ..............                                                 .................
T Consensus       159 ~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~  189 (388)
T 3oz6_A          159 FVNIRRVTNNIPLS-------------------------------------------------INENTENFDDDQPILTD  189 (388)
T ss_dssp             SSSCCCCCCCGGGC-------------------------------------------------CC---------------
T ss_pred             cccccccccccccc-------------------------------------------------ccccccccccccccccC
Confidence            54321110000000                                                 00000000001112234


Q ss_pred             ccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-----------------
Q 012762          318 FVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-----------------  379 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-----------------  379 (457)
                      ++||+.|+|||++.+ ..|+.++|||||||++|||++|++||.+.+....+..++... ..|.                 
T Consensus       190 ~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~-~~p~~~~~~~~~~~~~~~~~~  268 (388)
T 3oz6_A          190 YVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVI-DFPSNEDVESIQSPFAKTMIE  268 (388)
T ss_dssp             CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH-CCCCHHHHHTSCCSSHHHHHH
T ss_pred             CcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc-CCCCHHHHHhccCHHHHHHHH
Confidence            689999999999987 568999999999999999999999999988777766665321 1111                 


Q ss_pred             -----------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          380 -----------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       380 -----------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                                                   ...+++++.+||.+||..||++|||    ++|+|+||||+.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t----~~e~l~Hp~~~~~~  336 (388)
T 3oz6_A          269 SLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRIS----ANDALKHPFVSIFH  336 (388)
T ss_dssp             HHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCC----HHHHTTSTTTTTTC
T ss_pred             hCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCC----HHHHhCCHHHHHhc
Confidence                                         1257889999999999999999999    99999999998753

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-50  Score=402.31  Aligned_cols=260  Identities=29%  Similarity=0.424  Sum_probs=225.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++++.||+|+||+||+|.++    .+++.||+|++.....   .....+.+|+++|+.++||||+++++++.+.+.
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~----~~~~~~a~K~~~~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~  122 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEK----ATGRVFVAKFINTPYP---LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE  122 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSE
T ss_pred             ccceEEEEEEecCCCEEEEEEEEC----CCCCEEEEEEecccch---hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCE
Confidence            468999999999999999999986    4788999999975422   234567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc--CCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~~  238 (457)
                      +||||||+.|++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.  ++.+||+|||+++..
T Consensus       123 ~~lv~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~  201 (387)
T 1kob_A          123 MVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  201 (387)
T ss_dssp             EEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceec
Confidence            99999999999999887653 356999999999999999999999999999999999999974  478999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       202 ~~~~~-----------------------------------------------------------------------~~~~  210 (387)
T 1kob_A          202 NPDEI-----------------------------------------------------------------------VKVT  210 (387)
T ss_dssp             CTTSC-----------------------------------------------------------------------EEEE
T ss_pred             CCCcc-----------------------------------------------------------------------eeee
Confidence            32111                                                                       1123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||++.+..++.++|||||||++|||++|..||.+......+..+....+.++.  ...++.++.+||.+||.
T Consensus       211 ~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  290 (387)
T 1kob_A          211 TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQ  290 (387)
T ss_dssp             CSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSC
T ss_pred             ccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcC
Confidence            6999999999999999999999999999999999999999998887777777776655443  34688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      .||++||+    +.|+|+||||++..+
T Consensus       291 ~dP~~Rpt----~~ell~hp~~~~~~~  313 (387)
T 1kob_A          291 KEPRKRLT----VHDALEHPWLKGDHS  313 (387)
T ss_dssp             SSGGGSCC----HHHHHTSTTTSSCCT
T ss_pred             CChhHCcC----HHHHhhCccccCCcc
Confidence            99999999    999999999997544

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.3e-49  Score=392.83  Aligned_cols=260  Identities=25%  Similarity=0.441  Sum_probs=228.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.+.    .+++.||+|++.+...........+.+|+++++.++|+||+++++++.+.+
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  114 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDA----DTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND  114 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence            3468999999999999999999986    478899999998765545556677888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus       115 ~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  192 (335)
T 2owb_A          115 FVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  192 (335)
T ss_dssp             EEEEEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence            999999999999999988765  679999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       193 ~~~~----------------------------------------------------------------------~~~~~~  202 (335)
T 2owb_A          193 YDGE----------------------------------------------------------------------RKKVLC  202 (335)
T ss_dssp             STTC----------------------------------------------------------------------CBCCCC
T ss_pred             cCcc----------------------------------------------------------------------cccccC
Confidence            1110                                                                      011246


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||...........+......++.  .++..+.+||.+||..||
T Consensus       203 gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~dp  280 (335)
T 2owb_A          203 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK--HINPVAASLIQKMLQTDP  280 (335)
T ss_dssp             SCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCT--TSCHHHHHHHHHHTCSSG
T ss_pred             CCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCc--cCCHHHHHHHHHHccCCh
Confidence            999999999999999999999999999999999999999988877777777766665554  488999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++||+    +.|+++||||...
T Consensus       281 ~~Rps----~~ell~~~~~~~~  298 (335)
T 2owb_A          281 TARPT----INELLNDEFFTSG  298 (335)
T ss_dssp             GGSCC----GGGGGGSHHHHTS
T ss_pred             hHCcC----HHHHhcCccccCC
Confidence            99999    9999999999863

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9e-50  Score=397.42  Aligned_cols=262  Identities=26%  Similarity=0.405  Sum_probs=220.7

Q ss_pred             CCCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-----CC
Q 012762           72 NNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-----HP  146 (457)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-----H~  146 (457)
                      .....+.+..++|+++++||+|+||+||+|++.    .+++.||||++....    .....+..|+++|+.+.     ||
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~h~   96 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHI----DNKKYYAVKVVRNIK----KYTRSAKIEADILKKIQNDDINNN   96 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECSCH----HHHHHHHHHHHHHHHTCCCSTTGG
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEEC----CCCeEEEEEEeccch----hhhhhhHHHHHHHHHhcccCCCCC
Confidence            344556667789999999999999999999986    478899999996432    33455677999999986     99


Q ss_pred             CCceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---
Q 012762          147 FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---  223 (457)
Q Consensus       147 nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---  223 (457)
                      ||+++++++...+..||||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   
T Consensus        97 ~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~  175 (360)
T 3llt_A           97 NIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYF  175 (360)
T ss_dssp             GBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTC
T ss_pred             CeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccc
Confidence            9999999999999999999999 999999998876677999999999999999999999999999999999999975   


Q ss_pred             ----------------------CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 012762          224 ----------------------DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCI  281 (457)
Q Consensus       224 ----------------------~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (457)
                                            ++.+||+|||++......                                        
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----------------------------------------  215 (360)
T 3llt_A          176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----------------------------------------  215 (360)
T ss_dssp             CEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----------------------------------------
T ss_pred             cccccchhcccccccccccccCCCCEEEEeccCceecCCC----------------------------------------
Confidence                                  789999999998543211                                        


Q ss_pred             CCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC
Q 012762          282 VPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI  361 (457)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~  361 (457)
                                                       ....+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.
T Consensus       216 ---------------------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          216 ---------------------------------HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             ---------------------------------CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ---------------------------------CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence                                             01246999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHhcccCCCC--------------------------C------------------CCCChHHHHHHHHHhhh
Q 012762          362 DHELTLANVVARALEFPK--------------------------E------------------PSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~--------------------------~------------------~~~~~~~~~ll~~~L~~  397 (457)
                      .....+..+.......+.                          .                  ...++.+.+||.+||+.
T Consensus       263 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  342 (360)
T 3llt_A          263 EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQI  342 (360)
T ss_dssp             SHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCS
T ss_pred             cHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcC
Confidence            776666655543322221                          0                  01135678999999999


Q ss_pred             CCCCCCCCCcChHHHhcCCCCC
Q 012762          398 DPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      ||++||+    +.|+|+||||+
T Consensus       343 dP~~Rpt----a~elL~hp~f~  360 (360)
T 3llt_A          343 DPTLRPS----PAELLKHKFLE  360 (360)
T ss_dssp             SGGGSCC----HHHHTTSGGGC
T ss_pred             ChhhCCC----HHHHhcCcccC
Confidence            9999999    99999999996

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.2e-50  Score=395.88  Aligned_cols=266  Identities=28%  Similarity=0.410  Sum_probs=226.9

Q ss_pred             CCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           82 SDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      ++|.+. +.||+|+||+||+|.++    .+++.||+|++.+.... ......+.+|+++++.+ +||||+++++++...+
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~  102 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISK----STGQEYAAKFLKKRRRG-QDCRAEILHEIAVLELAKSCPRVINLHEVYENTS  102 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEESEETT-EECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred             hEEeeccceeCCCCCeEEEEEEEC----CCCCEEEEEEEehhhcc-hHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence            457777 89999999999999986    47899999999765432 23456778899999999 5699999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~DFG~s~  236 (457)
                      ..|+||||+.+++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++
T Consensus       103 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~  182 (327)
T 3lm5_A          103 EIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR  182 (327)
T ss_dssp             EEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCE
T ss_pred             eEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCcccc
Confidence            9999999999999998886655678999999999999999999999999999999999999987   7899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                       ..
T Consensus       183 ~~~~~~~-----------------------------------------------------------------------~~  191 (327)
T 3lm5_A          183 KIGHACE-----------------------------------------------------------------------LR  191 (327)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             ccCCccc-----------------------------------------------------------------------cc
Confidence            5432110                                                                       11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~  394 (457)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+.......+.  ...++..+.+||.+|
T Consensus       192 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  271 (327)
T 3lm5_A          192 EIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSL  271 (327)
T ss_dssp             --CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHH
T ss_pred             cccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHH
Confidence            246999999999999999999999999999999999999999998888777777766555443  346889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      |..||++||+    ++++|+||||+..+|..+.
T Consensus       272 L~~dP~~Rpt----~~~ll~h~~~~~~~~~~~~  300 (327)
T 3lm5_A          272 LVKNPEKRPT----AEICLSHSWLQQWDFENLF  300 (327)
T ss_dssp             SCSSGGGSCC----HHHHTTCGGGCCCCTTCC-
T ss_pred             cCCChhhCcC----HHHHhCCHhhccccccccc
Confidence            9999999999    9999999999999997653

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.9e-50  Score=389.50  Aligned_cols=263  Identities=26%  Similarity=0.377  Sum_probs=215.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|.++    .+|+.||+|++..... .......+.+|++++++++||||+++++++...+.
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   76 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNR----DTGQIVAIKKFLESED-DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRR   76 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cccceEeeEEeecCCeEEEEEEeC----CCCcEEEEEEeecccc-chHHHHHHHHHHHHHHhCCCCCccchhheeecCCe
Confidence            468999999999999999999986    4788999999865432 23345667789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        77 ~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  154 (311)
T 4agu_A           77 LHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTG  154 (311)
T ss_dssp             EEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             EEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccC
Confidence            99999999999998887764  6699999999999999999999999999999999999999999999999999865432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                      ....+|
T Consensus       155 ~~~~----------------------------------------------------------------------~~~~~~  164 (311)
T 4agu_A          155 PSDY----------------------------------------------------------------------YDDEVA  164 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------cCCCcC
Confidence            1110                                                                      012358


Q ss_pred             CCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-------------------CCCC-
Q 012762          321 THEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-------------------EFPK-  379 (457)
Q Consensus       321 t~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-------------------~~~~-  379 (457)
                      |+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.........+.....                   ..+. 
T Consensus       165 ~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (311)
T 4agu_A          165 TRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDP  244 (311)
T ss_dssp             -GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCC
T ss_pred             CccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCc
Confidence            999999999987 5689999999999999999999999998877665554443211                   1111 


Q ss_pred             ---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          380 ---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       380 ---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                               .+.++.++.+||.+||..||++||+    ++|+++||||+++.|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  294 (311)
T 4agu_A          245 EDMEPLELKFPNISYPALGLLKGCLHMDPTERLT----CEQLLHHPYFENIREI  294 (311)
T ss_dssp             SSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCC----HHHHHTSGGGTTCC--
T ss_pred             cccchhhhhcccccHHHHHHHHHHccCChhhcCC----HHHHhcChHHHhccCH
Confidence                     1357788999999999999999999    9999999999998774

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.5e-50  Score=399.15  Aligned_cols=257  Identities=29%  Similarity=0.446  Sum_probs=217.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      .++|++.+.||+|+||+||+|.++    .+++.||||++.+...       ...+|+++|.++ +||||+++++++.+++
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~avK~~~~~~~-------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~   89 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHK----ATNMEFAVKIIDKSKR-------DPTEEIEILLRYGQHPNIITLKDVYDDGK   89 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEETTTC-------CCHHHHHHHHHHTTSTTBCCEEEEEECSS
T ss_pred             cccEEEEEEEeeCCCEEEEEEEEC----CCCCEEEEEEEEcccC-------ChHHHHHHHHHhcCCCCcCeEEEEEEcCC
Confidence            357999999999999999999987    4789999999976532       134588888887 7999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC----CCEEEeccCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD----GHIMLTDFDLS  235 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~----~~vkl~DFG~s  235 (457)
                      .+|+|||||+||+|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||+..+    +.+||+|||++
T Consensus        90 ~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a  167 (342)
T 2qr7_A           90 YVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFA  167 (342)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTC
T ss_pred             EEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCc
Confidence            999999999999999888765  679999999999999999999999999999999999998543    35999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.......                                                                      ..
T Consensus       168 ~~~~~~~~----------------------------------------------------------------------~~  177 (342)
T 2qr7_A          168 KQLRAENG----------------------------------------------------------------------LL  177 (342)
T ss_dssp             EECBCTTC----------------------------------------------------------------------CB
T ss_pred             ccCcCCCC----------------------------------------------------------------------ce
Confidence            65432110                                                                      11


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC---ChHHHHHHHHhcccCCCC--CCCCChHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI---DHELTLANVVARALEFPK--EPSVPGPAKDL  390 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l  390 (457)
                      .+.+||+.|+|||++.+..|+.++|||||||++|||++|..||.+.   ...+.+..+..+.+.++.  +..+++++++|
T Consensus       178 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  257 (342)
T 2qr7_A          178 MTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDL  257 (342)
T ss_dssp             CCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHH
T ss_pred             eccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHH
Confidence            1346999999999999888999999999999999999999999863   345566666666665543  35689999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      |.+||..||++||+    +.++++||||.  +|..+
T Consensus       258 i~~~L~~dP~~R~t----~~~il~hp~~~--~~~~~  287 (342)
T 2qr7_A          258 VSKMLHVDPHQRLT----AALVLRHPWIV--HWDQL  287 (342)
T ss_dssp             HHHHTCSSTTTSCC----HHHHTTSHHHH--TGGGS
T ss_pred             HHHHCCCChhHCcC----HHHHhcCCeec--Ccccc
Confidence            99999999999999    99999999995  57554

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=3e-50  Score=395.55  Aligned_cols=265  Identities=23%  Similarity=0.326  Sum_probs=213.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|.++    .+++.||+|++.....  ......+.+|+++|+.++||||+++++++...+.
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   74 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSK----LTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKS   74 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSC
T ss_pred             CCceEEEEEEcCCCCEEEEEEEEC----CCCcEEEEEEEecccc--cccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCE
Confidence            368999999999999999999986    4788999999965432  1111234469999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||++ ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        75 ~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  152 (324)
T 3mtl_A           75 LTLVFEYLD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSI  152 (324)
T ss_dssp             EEEEEECCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC--
T ss_pred             EEEEecccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccC
Confidence            999999995 6888887764 35699999999999999999999999999999999999999999999999999864431


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      .....+|
T Consensus       153 ~~~----------------------------------------------------------------------~~~~~~~  162 (324)
T 3mtl_A          153 PTK----------------------------------------------------------------------TYDNEVV  162 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Ccc----------------------------------------------------------------------ccccccC
Confidence            110                                                                      0112358


Q ss_pred             CCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--------------------
Q 012762          321 THEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--------------------  379 (457)
Q Consensus       321 t~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--------------------  379 (457)
                      |+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+....+....+.......+.                    
T Consensus       163 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (324)
T 3mtl_A          163 TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKY  242 (324)
T ss_dssp             CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCC
T ss_pred             cccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccc
Confidence            999999999987 56899999999999999999999999998877766665543221111                    


Q ss_pred             --------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          380 --------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       380 --------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                              ...++.++.+||.+||+.||++||+    +.|+|+||||..+.+...+
T Consensus       243 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~~~  294 (324)
T 3mtl_A          243 RAEALLSHAPRLDSDGADLLTKLLQFEGRNRIS----AEDAMKHPFFLSLGERIHK  294 (324)
T ss_dssp             CCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGGGGCSTTSS
T ss_pred             cchhhhhhcCCCCHHHHHHHHHHcCcCcccCCC----HHHHhcChhhhhccccccc
Confidence                    1246788999999999999999999    9999999999987665433

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=8.7e-50  Score=382.93  Aligned_cols=261  Identities=28%  Similarity=0.510  Sum_probs=201.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||+|+||+||+|++.    .+++.||+|++.+...........+.+|+++++.++||||+++++++...+.
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   85 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESI----HTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY   85 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE
T ss_pred             cccceeeeeecCCCceEEEEEEEc----cCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe
Confidence            468999999999999999999876    4788999999987665555556778899999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~  164 (278)
T 3cok_A           86 VYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM  164 (278)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-
T ss_pred             EEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC
Confidence            99999999999999988764 35689999999999999999999999999999999999999999999999999765431


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      ......|
T Consensus       165 ~~~----------------------------------------------------------------------~~~~~~~  174 (278)
T 3cok_A          165 PHE----------------------------------------------------------------------KHYTLCG  174 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC----------------------------------------------------------------------cceeccC
Confidence            110                                                                      0112368


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      |+.|+|||++.+..++.++|||||||++|+|++|+.||...........+.......+  ..++.++.+||.+||..||+
T Consensus       175 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~dp~  252 (278)
T 3cok_A          175 TPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMP--SFLSIEAKDLIHQLLRRNPA  252 (278)
T ss_dssp             -----------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCC--TTSCHHHHHHHHHHSCSSGG
T ss_pred             CCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCc--cccCHHHHHHHHHHcccCHh
Confidence            9999999999998899999999999999999999999988765555554444443333  34889999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      +||+    +.++++||||....
T Consensus       253 ~Rps----~~~~l~h~~~~~~~  270 (278)
T 3cok_A          253 DRLS----LSSVLDHPFMSRNS  270 (278)
T ss_dssp             GSCC----HHHHTTSTTTC---
T ss_pred             hCCC----HHHHhcCccccCCC
Confidence            9999    99999999998643

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=3.4e-49  Score=382.09  Aligned_cols=260  Identities=25%  Similarity=0.441  Sum_probs=227.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.++    .+++.||+|++.+...........+.+|+++++.++|+||+++++++...+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   88 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDA----DTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDND   88 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             cccceEEEEEEeecCCEEEEEEEEC----CCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCC
Confidence            4468999999999999999999986    478899999998765545556677888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus        89 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  166 (294)
T 2rku_A           89 FVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE  166 (294)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence            999999999999999988775  579999999999999999999999999999999999999999999999999976543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       167 ~~~~----------------------------------------------------------------------~~~~~~  176 (294)
T 2rku_A          167 YDGE----------------------------------------------------------------------RKKVLC  176 (294)
T ss_dssp             STTC----------------------------------------------------------------------CBCCCC
T ss_pred             cCcc----------------------------------------------------------------------cccccc
Confidence            1100                                                                      011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||......+....+.......+.  .++..+.++|.+||..||
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p  254 (294)
T 2rku_A          177 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPK--HINPVAASLIQKMLQTDP  254 (294)
T ss_dssp             SCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT--TSCHHHHHHHHHHTCSSG
T ss_pred             CCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCcc--ccCHHHHHHHHHHcccCh
Confidence            899999999999988999999999999999999999999988877777777666555554  588999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++||+    +.|+++||||...
T Consensus       255 ~~Rps----~~~ll~~~~~~~~  272 (294)
T 2rku_A          255 TARPT----INELLNDEFFTSG  272 (294)
T ss_dssp             GGSCC----GGGGGGSHHHHTS
T ss_pred             hhCcC----HHHHhhChheecC
Confidence            99999    9999999999853

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.6e-50  Score=395.74  Aligned_cols=269  Identities=26%  Similarity=0.435  Sum_probs=223.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh--hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV--SRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||+|++.+....  .......+.+|+++|+.++||||+++++++.+.+
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIEN----QTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hheeecceeeecCCeEEEEEEEC----CCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence            47999999999999999999876    47889999999876542  2345677888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhC--------------------------------------CCCCCCHHHHHHHHHHHHHHH
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQ--------------------------------------PDKRFHESAVRFYASEVVVAL  201 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~--------------------------------------~~~~~~~~~~~~i~~qi~~~L  201 (457)
                      ..|+|||||+|++|.+++...                                      ....+++..++.++.||+.||
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  181 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL  181 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence            999999999999999887521                                      012246788899999999999


Q ss_pred             HHHHHcCceeecCCCCCeEEccCC--CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 012762          202 EFLHMMGIIYRDLKPENVLVRSDG--HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPN  279 (457)
Q Consensus       202 ~yLH~~~iiHrDIKp~NIll~~~~--~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (457)
                      .|||++||+||||||+|||++.++  .+||+|||++..........                                  
T Consensus       182 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~----------------------------------  227 (345)
T 3hko_A          182 HYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE----------------------------------  227 (345)
T ss_dssp             HHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------------------------------
T ss_pred             HHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccc----------------------------------
Confidence            999999999999999999998776  89999999986432111000                                  


Q ss_pred             CCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCC
Q 012762          280 CIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTP  357 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~P  357 (457)
                                                      ........||+.|+|||++.+  ..++.++|||||||++|||++|+.|
T Consensus       228 --------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p  275 (345)
T 3hko_A          228 --------------------------------YYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVP  275 (345)
T ss_dssp             ---------------------------------------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------------------------cccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                                            001113469999999999976  5689999999999999999999999


Q ss_pred             CCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          358 FKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       358 f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      |.+....+....++.....++..  ..++.++.+||.+||..||.+||+    +.++++||||+.+.|.
T Consensus       276 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~~l~hp~~~~~~~~  340 (345)
T 3hko_A          276 FPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFD----AMRALQHPWISQFSDK  340 (345)
T ss_dssp             SCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCC----HHHHHHSHHHHTTSSC
T ss_pred             CCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCC----HHHHhcChhhccChHh
Confidence            99988888888888776655543  347899999999999999999999    9999999999987764

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.7e-49  Score=378.93  Aligned_cols=262  Identities=25%  Similarity=0.451  Sum_probs=221.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||.||+|.++    .+++.||||++.............+.+|+++++.++||||+++++++
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   80 (276)
T 2h6d_A            5 DGRVKIGHYVLGDTLGVGTFGKVKIGEHQ----LTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVI   80 (276)
T ss_dssp             --CCEETTEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             cCcceeccEEEEeeecCCCCeEEEEEEEC----CCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEE
Confidence            34567789999999999999999999986    37889999999877655555667888999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+|+||||+|||++.++.+||+|||++
T Consensus        81 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~  158 (276)
T 2h6d_A           81 STPTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS  158 (276)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGG
T ss_pred             ecCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccc
Confidence            9999999999999999999998775  56999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                       .
T Consensus       159 ~~~~~~~~-----------------------------------------------------------------------~  167 (276)
T 2h6d_A          159 NMMSDGEF-----------------------------------------------------------------------L  167 (276)
T ss_dssp             GCCCC---------------------------------------------------------------------------
T ss_pred             cccCCCcc-----------------------------------------------------------------------e
Confidence            65432110                                                                       0


Q ss_pred             ccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....||+.|+|||++.+..+ +.++||||||+++|+|++|..||...........+.......+.  .++..+.++|.+|
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~~  245 (276)
T 2h6d_A          168 RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPE--YLNRSVATLLMHM  245 (276)
T ss_dssp             ---------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHH
T ss_pred             ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCch--hcCHHHHHHHHHH
Confidence            12358999999999988775 68999999999999999999999988777777776666555543  4889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |+.||.+||+    +.++++||||+.
T Consensus       246 l~~~p~~Rps----~~~~l~h~~~~~  267 (276)
T 2h6d_A          246 LQVDPLKRAT----IKDIREHEWFKQ  267 (276)
T ss_dssp             TCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             ccCChhhCCC----HHHHHhChhhcc
Confidence            9999999999    999999999975

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=7e-49  Score=393.03  Aligned_cols=266  Identities=18%  Similarity=0.267  Sum_probs=221.5

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..+.+..++|++.+.||+|+||+||+|++...+   ...+..||||+++...  .......+.+|+++|+++ +||||++
T Consensus        74 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~  151 (370)
T 2psq_A           74 PKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIIN  151 (370)
T ss_dssp             TTTBCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCC
T ss_pred             ccccccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEee
Confidence            345677889999999999999999999976422   2456789999997642  334456788899999999 8999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++...+.+|+||||+++|+|.+++....              ...+++..++.++.||+.||.|||++||+||||||
T Consensus       152 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp  231 (370)
T 2psq_A          152 LLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAA  231 (370)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCG
T ss_pred             EEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccch
Confidence            9999999999999999999999999988753              23589999999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +||||+.++.+||+|||+++.........                                                   
T Consensus       232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~---------------------------------------------------  260 (370)
T 2psq_A          232 RNVLVTENNVMKIADFGLARDINNIDYYK---------------------------------------------------  260 (370)
T ss_dssp             GGEEECTTCCEEECCCSSCEETTCCCTTC---------------------------------------------------
T ss_pred             hhEEECCCCCEEEccccCCcccCccccee---------------------------------------------------
Confidence            99999999999999999986543211100                                                   


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                       ......||+.|+|||++.+..++.++|||||||++|||++ |..||.+....+....+... .
T Consensus       261 -----------------~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~-~  322 (370)
T 2psq_A          261 -----------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEG-H  322 (370)
T ss_dssp             -----------------TTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT-C
T ss_pred             -----------------cccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcC-C
Confidence                             0012247889999999999999999999999999999999 99999987776666554433 3


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .......++.++.+||.+||..||++||+    +.|++++
T Consensus       323 ~~~~~~~~~~~l~~li~~~l~~dP~~Rpt----~~ell~~  358 (370)
T 2psq_A          323 RMDKPANCTNELYMMMRDCWHAVPSQRPT----FKQLVED  358 (370)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            44445568999999999999999999999    8888764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.4e-49  Score=386.86  Aligned_cols=256  Identities=27%  Similarity=0.431  Sum_probs=219.6

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|...++||+|+||+||+|+++    .+|+.||||++....   ......+.+|+++++.++||||+++++++...+..|
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~----~~g~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  118 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREK----HSGRQVAVKMMDLRK---QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELW  118 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTT---CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             hhhccEEeccCCCeEEEEEEEC----CCCcEEEEEEEeccc---hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEE
Confidence            4888899999999999999976    478999999997543   234566788999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      +||||+++++|.+++..   ..+++..+..++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.......
T Consensus       119 lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~  195 (321)
T 2c30_A          119 VLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV  195 (321)
T ss_dssp             EEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS
T ss_pred             EEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCc
Confidence            99999999999998865   569999999999999999999999999999999999999999999999999976543211


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                      .                                                                      ......||+
T Consensus       196 ~----------------------------------------------------------------------~~~~~~gt~  205 (321)
T 2c30_A          196 P----------------------------------------------------------------------KRKSLVGTP  205 (321)
T ss_dssp             C----------------------------------------------------------------------CBCCCCSCG
T ss_pred             c----------------------------------------------------------------------ccccccCCc
Confidence            0                                                                      011346999


Q ss_pred             CccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       323 ~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      .|+|||++.+..++.++|||||||++|||++|+.||.+.........+...... ......++..+.++|.+||..||++
T Consensus       206 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~  285 (321)
T 2c30_A          206 YWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQE  285 (321)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTT
T ss_pred             cccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhh
Confidence            999999999999999999999999999999999999987776666665544322 2223357889999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ||+    +.++++||||....
T Consensus       286 Rps----~~ell~hp~~~~~~  302 (321)
T 2c30_A          286 RAT----AQELLDHPFLLQTG  302 (321)
T ss_dssp             SCC----HHHHHTSGGGGGCC
T ss_pred             CcC----HHHHhcChhhccCC
Confidence            999    99999999998643

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=4.4e-49  Score=402.51  Aligned_cols=288  Identities=24%  Similarity=0.300  Sum_probs=212.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ..++|++++.||+|+||+||+|+++    .+++.||||++.+. ........++.+|+++|+.++|+||+++++++... 
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vAiK~~~~~-~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~   98 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDK----NTEKNVAIKKVNRM-FEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDD   98 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECST-TTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEEC----CCCcEEEEEEeCch-hcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCC
Confidence            3468999999999999999999987    47899999999753 22334557788899999999999999999999766 


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          +.+||||||+ +++|..++...  ..+++..++.++.||+.||.|||+.||+||||||+||||+.++.+||+|||+
T Consensus        99 ~~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGl  175 (432)
T 3n9x_A           99 LLKFDELYIVLEIA-DSDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGL  175 (432)
T ss_dssp             TTTCCCEEEEEECC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CCcCCeEEEEEecC-CcCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence                5789999999 56999888764  6799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++...............                                                ...............
T Consensus       176 a~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~~  207 (432)
T 3n9x_A          176 ARTINSEKDTNIVNDLE------------------------------------------------ENEEPGPHNKNLKKQ  207 (432)
T ss_dssp             CEEC----------------------------------------------------------------------------
T ss_pred             ccccccccccccccccc------------------------------------------------ccccccccccchhcc
Confidence            87664322111000000                                                000000000000112


Q ss_pred             cccccCCCCccCchhh-cCCCCCccchhhhhhHHHHHHhcC-----------CCCCCCCCh-----------------HH
Q 012762          315 SMSFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYG-----------TTPFKGIDH-----------------EL  365 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l-~~~~~~~~sDiwSlG~il~elltG-----------~~Pf~~~~~-----------------~~  365 (457)
                      ....+||+.|+|||++ .+..|+.++|||||||++|||++|           .++|.+...                 ..
T Consensus       208 ~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~  287 (432)
T 3n9x_A          208 LTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRD  287 (432)
T ss_dssp             ---CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHH
T ss_pred             ccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHH
Confidence            3356899999999996 455699999999999999999984           444444320                 11


Q ss_pred             HHHHHHhccc------------------------CCCC-----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCC
Q 012762          366 TLANVVARAL------------------------EFPK-----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ  416 (457)
Q Consensus       366 ~~~~~~~~~~------------------------~~~~-----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp  416 (457)
                      .+..++....                        ..+.     .+.+++++.+||.+||..||++||+    ++|+|+||
T Consensus       288 ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp  363 (432)
T 3n9x_A          288 QLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRIT----IDQALDHP  363 (432)
T ss_dssp             HHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHTCG
T ss_pred             HHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCC----HHHHhcCh
Confidence            1111111100                        0000     1357899999999999999999999    99999999


Q ss_pred             CCCCCCchhhh
Q 012762          417 FFNGVNWALLR  427 (457)
Q Consensus       417 ~f~~~~~~~~~  427 (457)
                      ||+.++|....
T Consensus       364 ~f~~~~~~~~e  374 (432)
T 3n9x_A          364 YLKDVRKKKLE  374 (432)
T ss_dssp             GGTTTCCTTTC
T ss_pred             hhhhccCcccC
Confidence            99999997654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-49  Score=394.25  Aligned_cols=259  Identities=27%  Similarity=0.374  Sum_probs=211.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR-  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~-  159 (457)
                      .++|++++.||+|+||+||+|.++    .+|+.||||++.... .......++.+|+++|+.++||||+++++++...+ 
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~   98 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDG----RTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDET   98 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEET----TTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSS
T ss_pred             cceEEEeEEeeecCCeEEEEEEEC----CCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCc
Confidence            468999999999999999999986    478999999986532 23345567888999999999999999999997653 


Q ss_pred             -----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          160 -----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       160 -----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                           .+|+||||+ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        99 ~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~  174 (367)
T 1cm8_A           99 LDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL  174 (367)
T ss_dssp             TTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cccCceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeec
Confidence                 469999999 8999999877   5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.....                                                                         
T Consensus       175 a~~~~~~-------------------------------------------------------------------------  181 (367)
T 1cm8_A          175 ARQADSE-------------------------------------------------------------------------  181 (367)
T ss_dssp             CEECCSS-------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            8643211                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      ....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++......+               
T Consensus       182 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~  261 (367)
T 1cm8_A          182 MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNY  261 (367)
T ss_dssp             CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHH
T ss_pred             cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHH
Confidence            112468999999999987 6799999999999999999999999999887666666554322111               


Q ss_pred             --------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          379 --------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       379 --------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                                    ....+++++.+||.+||..||.+|||    ++|+|+||||+...+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t----~~e~l~hp~f~~~~~~~  318 (367)
T 1cm8_A          262 MKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVT----AGEALAHPYFESLHDTE  318 (367)
T ss_dssp             HHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGTTTC---
T ss_pred             HHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCC----HHHHhcChHHHhhcCCc
Confidence                          11346789999999999999999999    99999999999876643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.6e-49  Score=379.39  Aligned_cols=254  Identities=28%  Similarity=0.470  Sum_probs=222.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.++    .++..||+|++.+...   .....+.+|+++++.++||||+++++++...+..
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~a~k~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   81 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQK----GTRIRRAAKKIPKYFV---EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDI   81 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGC---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             hhEEeeeEEeecCCEEEEEEEeC----CCCcEEEEEeehhhcc---chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeE
Confidence            47999999999999999999986    4788999999976432   3456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~~~  238 (457)
                      |+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++...
T Consensus        82 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~  159 (277)
T 3f3z_A           82 YLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF  159 (277)
T ss_dssp             EEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             EEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence            9999999999998888765  669999999999999999999999999999999999999   77889999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       160 ~~~~~-----------------------------------------------------------------------~~~~  168 (277)
T 3f3z_A          160 KPGKM-----------------------------------------------------------------------MRTK  168 (277)
T ss_dssp             CTTSC-----------------------------------------------------------------------BCCC
T ss_pred             cCccc-----------------------------------------------------------------------hhcc
Confidence            32111                                                                       1123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||++.+. ++.++|||||||++|+|++|+.||...........+......++..  ..+++.+.+||.+||+
T Consensus       169 ~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  247 (277)
T 3f3z_A          169 VGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLT  247 (277)
T ss_dssp             CSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTC
T ss_pred             CCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHcc
Confidence            599999999999765 8999999999999999999999999988888888887776666542  3588999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||++||+    +.++++||||+.
T Consensus       248 ~dp~~R~s----~~~~l~h~~~~~  267 (277)
T 3f3z_A          248 KSPKQRIT----SLQALEHEWFEK  267 (277)
T ss_dssp             SSTTTSCC----HHHHTTSHHHHH
T ss_pred             CChhhCcC----HHHHhcCHHHhc
Confidence            99999999    999999999975

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=7.6e-50  Score=400.37  Aligned_cols=259  Identities=25%  Similarity=0.430  Sum_probs=218.9

Q ss_pred             Ccee--EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           83 DLRF--VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        83 ~~~~--~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .|.+  .+.||+|+||+||+|.++    .+|+.||+|++.....   .....+.+|+++|++++||||+++++++...+.
T Consensus        88 ~~~~~~~~~lG~G~~g~Vy~a~~~----~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  160 (373)
T 2x4f_A           88 FYTVSKTEILGGGRFGQVHKCEET----ATGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKND  160 (373)
T ss_dssp             TEEEEEEEECC-----CEEEEEET----TTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             ceeeecceEEecCcCEEEEEEEEc----CCCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE
Confidence            3554  678999999999999876    4789999999976432   345678889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE--ccCCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV--RSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll--~~~~~vkl~DFG~s~~~  238 (457)
                      +||||||+++++|.+++... ...+++..++.++.||+.||.|||+.||+||||||+|||+  +.++.+||+|||+++..
T Consensus       161 ~~lv~E~~~~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~  239 (373)
T 2x4f_A          161 IVLVMEYVDGGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRY  239 (373)
T ss_dssp             EEEEEECCTTCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEEC
T ss_pred             EEEEEeCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceec
Confidence            99999999999998887653 2468999999999999999999999999999999999999  45678999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       240 ~~~~~-----------------------------------------------------------------------~~~~  248 (373)
T 2x4f_A          240 KPREK-----------------------------------------------------------------------LKVN  248 (373)
T ss_dssp             CTTCB-----------------------------------------------------------------------CCCC
T ss_pred             CCccc-----------------------------------------------------------------------cccc
Confidence            32110                                                                       1123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      +||+.|+|||++.+..++.++|||||||++|||++|..||.+......+..++...+.++.  ...+++++++||.+||.
T Consensus       249 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~  328 (373)
T 2x4f_A          249 FGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLI  328 (373)
T ss_dssp             CSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSC
T ss_pred             cCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcC
Confidence            5999999999999888999999999999999999999999998888888888877665543  24688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .||.+||+    +.|+|+||||+..+|.
T Consensus       329 ~dp~~Rps----~~e~l~hp~~~~~~~~  352 (373)
T 2x4f_A          329 KEKSWRIS----ASEALKHPWLSDHKLH  352 (373)
T ss_dssp             SSGGGSCC----HHHHHHSHHHHCHHHH
T ss_pred             CChhhCCC----HHHHhcCcCcCCCchh
Confidence            99999999    9999999999987764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.8e-49  Score=408.74  Aligned_cols=256  Identities=25%  Similarity=0.351  Sum_probs=208.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP-  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~-  158 (457)
                      ..++|+++++||+|+||+||+|+++    .+++.||||++.+.. .......++.+|+++|+.++||||+++++++... 
T Consensus        60 ~~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vAiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~  134 (464)
T 3ttj_A           60 VLKRYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQK  134 (464)
T ss_dssp             EETTEEEEEEEEECSSCEEEEEEET----TTTEEEEEEEEESGG-GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCC
T ss_pred             ecCCeEEEEEeecCCCeEEEEEEEC----CCCCEEEEEEECccc-cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCC
Confidence            3578999999999999999999987    478999999997642 2334566788899999999999999999999655 


Q ss_pred             -----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          159 -----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       159 -----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                           ..+||||||+++ +|...+.    ..+++..++.++.||+.||+|||++||+||||||+||||+.++.+||+|||
T Consensus       135 ~~~~~~~~~lv~E~~~~-~l~~~~~----~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG  209 (464)
T 3ttj_A          135 TLEEFQDVYLVMELMDA-NLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  209 (464)
T ss_dssp             STTTCCEEEEEEECCSE-EHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred             ccccCCeEEEEEeCCCC-CHHHHHh----hcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEE
Confidence                 357999999965 5655553    348999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                       
T Consensus       210 ~a~~~~~~~-----------------------------------------------------------------------  218 (464)
T 3ttj_A          210 LARTAGTSF-----------------------------------------------------------------------  218 (464)
T ss_dssp             CC-----CC-----------------------------------------------------------------------
T ss_pred             eeeecCCCc-----------------------------------------------------------------------
Confidence            986443210                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+.+..++.......               
T Consensus       219 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~  298 (464)
T 3ttj_A          219 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV  298 (464)
T ss_dssp             CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHH
T ss_pred             ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHh
Confidence            11135799999999999999999999999999999999999999999887776666654322110               


Q ss_pred             ----CCCC---------------------CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 ----KEPS---------------------VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 ----~~~~---------------------~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                          ....                     .+.++++||.+||..||++|||    ++|+|+||||+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~~~~  361 (464)
T 3ttj_A          299 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDDALQHPYINV  361 (464)
T ss_dssp             TTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCC----HHHHHTSTTTGG
T ss_pred             hcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCC----HHHHhcChhhhh
Confidence                0000                     0356899999999999999999    999999999984

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.8e-50  Score=416.28  Aligned_cols=263  Identities=29%  Similarity=0.443  Sum_probs=229.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      -.++|++.++||+|+||+||+|+++    .+++.||||++.+...........+.+|+++|++++||||+++++++...+
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   99 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDK----ITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKG   99 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccCceEEeeEEecCCCEEEEEEEEC----CCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCC
Confidence            3467999999999999999999986    478899999998765554556778889999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~  236 (457)
                      ..|+|||||.+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++.
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  177 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLST  177 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHH
T ss_pred             EEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeE
Confidence            999999999999999888764  679999999999999999999999999999999999999   467899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                       ..
T Consensus       178 ~~~~~~~-----------------------------------------------------------------------~~  186 (484)
T 3nyv_A          178 HFEASKK-----------------------------------------------------------------------MK  186 (484)
T ss_dssp             HBCCCCS-----------------------------------------------------------------------HH
T ss_pred             Ecccccc-----------------------------------------------------------------------cc
Confidence            4432111                                                                       11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~  394 (457)
                      ..+||+.|+|||++.+ .|+.++|||||||++|+|++|..||.+......+..+....+.++.  +..+++++++||.+|
T Consensus       187 ~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~  265 (484)
T 3nyv_A          187 DKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKM  265 (484)
T ss_dssp             HHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHH
T ss_pred             cCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHH
Confidence            3469999999999987 5999999999999999999999999999888888888887665543  356889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      |+.||.+||+    +.|+|+||||+...+.
T Consensus       266 L~~dp~~R~s----~~e~l~h~~~~~~~~~  291 (484)
T 3nyv_A          266 LTYVPSMRIS----ARDALDHEWIQTYTKE  291 (484)
T ss_dssp             TCSSGGGSCC----HHHHHTSHHHHHHTC-
T ss_pred             CCCChhHCcC----HHHHhhChhhcccccc
Confidence            9999999999    9999999999865543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=7.1e-49  Score=381.51  Aligned_cols=265  Identities=24%  Similarity=0.419  Sum_probs=222.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHcCCCCCceEEEEEE--c
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEMLDHPFLPTLYATLD--C  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l~H~nIv~l~~~~~--~  157 (457)
                      .++|++.+.||+|+||.||+|.+.    .+++.||+|++.+..... ......+.+|+++++.++||||+++++++.  .
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   79 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDS----ETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE   79 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBT----TTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-
T ss_pred             ccceeEeeEEecCCCeEEEEEEEC----CCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC
Confidence            468999999999999999999876    478899999998765432 345677888999999999999999999984  4


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..|+||||++++ |.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        80 ~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           80 KQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             --CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            56889999999766 77777776667899999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                    .....
T Consensus       159 ~~~~~~~--------------------------------------------------------------------~~~~~  170 (305)
T 2wtk_C          159 LHPFAAD--------------------------------------------------------------------DTCRT  170 (305)
T ss_dssp             CCTTCSS--------------------------------------------------------------------CEECC
T ss_pred             cCccccc--------------------------------------------------------------------ccccc
Confidence            4321100                                                                    00112


Q ss_pred             ccCCCCccCchhhcCCCC--CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGH--GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~--~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ..||+.|+|||++.+...  +.++|||||||++|+|++|..||.+.........+......++.  .++..+.+||.+||
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~--~~~~~l~~li~~~l  248 (305)
T 2wtk_C          171 SQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPG--DCGPPLSDLLKGML  248 (305)
T ss_dssp             CCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCS--SSCHHHHHHHHHHT
T ss_pred             CCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCC--ccCHHHHHHHHHHc
Confidence            358999999999987543  78999999999999999999999998877777777766555543  58899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ..||.+||+    +.|+++||||+.....
T Consensus       249 ~~dp~~Rps----~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          249 EYEPAKRFS----IRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             CSSTTTSCC----HHHHHHSHHHHSCCCC
T ss_pred             cCChhhCCC----HHHHhcCcccccCCCC
Confidence            999999999    9999999999976554

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=6.7e-49  Score=378.76  Aligned_cols=257  Identities=28%  Similarity=0.450  Sum_probs=216.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.++||+|+||+||+|.++    .++..||+|++....  .......+.+|+++|+.++||||+++++++...+..
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   95 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEER----SSGLERVIKTINKDR--SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNM   95 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEGGG--CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             hheeecceeccCCCeEEEEEEEc----cCCceEEEEEeeccc--cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeE
Confidence            57999999999999999999976    478899999997653  233456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCc
Q 012762          162 CLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSL  236 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~  236 (457)
                      |+||||+++++|.+++...  ....+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++.
T Consensus        96 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~  175 (285)
T 3is5_A           96 YIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE  175 (285)
T ss_dssp             EEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred             EEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence            9999999999998877542  23679999999999999999999999999999999999999   456789999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                       ..
T Consensus       176 ~~~~~~~-----------------------------------------------------------------------~~  184 (285)
T 3is5_A          176 LFKSDEH-----------------------------------------------------------------------ST  184 (285)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ecCCccc-----------------------------------------------------------------------Cc
Confidence            5432110                                                                       11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC-CCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE-PSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~L  395 (457)
                      ...||+.|+|||++. ..++.++|||||||++|+|++|+.||.+.........+.......... ..+++++.+||.+||
T Consensus       185 ~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  263 (285)
T 3is5_A          185 NAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQML  263 (285)
T ss_dssp             --CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHT
T ss_pred             CcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHc
Confidence            235899999999986 458999999999999999999999999988777666665554444322 347899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.||++||+    +.|+++||||+.
T Consensus       264 ~~dP~~Rps----~~e~l~hp~f~~  284 (285)
T 3is5_A          264 TKDPERRPS----AAQVLHHEWFKQ  284 (285)
T ss_dssp             CSCTTTSCC----HHHHHTSGGGGC
T ss_pred             cCChhhCcC----HHHHhcCHHhhc
Confidence            999999999    999999999985

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.2e-49  Score=387.28  Aligned_cols=267  Identities=27%  Similarity=0.412  Sum_probs=211.9

Q ss_pred             CCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCC
Q 012762           82 SDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~  159 (457)
                      ++|++. +.||+|+||+||+|.++    .+++.||||++.+..   ......+.+|+++|+++ +||||+++++++...+
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~   84 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINL----ITSQEYAVKIIEKQP---GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEED   84 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECS----SSCCEEEEEEEECCS---SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETT
T ss_pred             eeEEecCceecCCceEEEEEEEEc----CCCcEEEEEEEeeCc---chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence            578885 78999999999999876    478899999997642   23456778899999885 7999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC---EEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~---vkl~DFG~s~  236 (457)
                      ..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||++.
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~  162 (316)
T 2ac3_A           85 RFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGS  162 (316)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC
T ss_pred             EEEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCcc
Confidence            999999999999999998775  57999999999999999999999999999999999999998775   9999999976


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ..........                                                               .......
T Consensus       163 ~~~~~~~~~~---------------------------------------------------------------~~~~~~~  179 (316)
T 2ac3_A          163 GIKLNGDCSP---------------------------------------------------------------ISTPELL  179 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCcccc---------------------------------------------------------------ccccccc
Confidence            5431110000                                                               0000111


Q ss_pred             cccCCCCccCchhhcC-----CCCCccchhhhhhHHHHHHhcCCCCCCCCCh---------------HHHHHHHHhcccC
Q 012762          317 SFVGTHEYLAPEIISG-----EGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---------------ELTLANVVARALE  376 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-----~~~~~~sDiwSlG~il~elltG~~Pf~~~~~---------------~~~~~~~~~~~~~  376 (457)
                      ..+||+.|+|||++.+     ..++.++|||||||++|||++|+.||.+...               ......+......
T Consensus       180 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  259 (316)
T 2ac3_A          180 TPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYE  259 (316)
T ss_dssp             --CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCC
T ss_pred             cccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcc
Confidence            3469999999999975     4578999999999999999999999987542               2345555555555


Q ss_pred             CCCC--CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          377 FPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       377 ~~~~--~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ++..  ..++.++++||.+||..||.+||+    +.|+++||||++..|.
T Consensus       260 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          260 FPDKDWAHISCAAKDLISKLLVRDAKQRLS----AAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHHSTTCC-----
T ss_pred             cCchhcccCCHHHHHHHHHHhhCChhhCCC----HHHHhcChhhcCCCCc
Confidence            5432  458899999999999999999999    9999999999987664

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.2e-48  Score=378.69  Aligned_cols=266  Identities=27%  Similarity=0.396  Sum_probs=225.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh------hhhhHHHHHHHHHHHHHHcC-CCCCceEEE
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL------VSRNKESRARIEREILEMLD-HPFLPTLYA  153 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~------~~~~~~~~~~~E~~il~~l~-H~nIv~l~~  153 (457)
                      .++|++.+.||+|+||+||+|.++    .+++.||||++.....      ........+.+|+++|+++. ||||+++++
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~   91 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHK----PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKD   91 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhccceeeeecCCCceEEEEEEEc----CcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeee
Confidence            468999999999999999999986    4789999999975421      11233456778999999995 999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++...+..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||
T Consensus        92 ~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg  169 (298)
T 1phk_A           92 TYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFG  169 (298)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             eeccCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEeccc
Confidence            999999999999999999999998774  579999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++........                                                                      
T Consensus       170 ~~~~~~~~~~----------------------------------------------------------------------  179 (298)
T 1phk_A          170 FSCQLDPGEK----------------------------------------------------------------------  179 (298)
T ss_dssp             TCEECCTTCC----------------------------------------------------------------------
T ss_pred             chhhcCCCcc----------------------------------------------------------------------
Confidence            9765432110                                                                      


Q ss_pred             ccccccCCCCccCchhhc------CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCCh
Q 012762          314 RSMSFVGTHEYLAPEIIS------GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPG  385 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~------~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~  385 (457)
                       .....||+.|+|||++.      ...++.++|||||||++|+|++|..||...........+......++..  ..++.
T Consensus       180 -~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (298)
T 1phk_A          180 -LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSD  258 (298)
T ss_dssp             -BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCH
T ss_pred             -cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCH
Confidence             11235899999999985      4457899999999999999999999999888777777777776655433  45789


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      .+.+||.+||..||++||+    +.++++||||+...|..++
T Consensus       259 ~l~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~~~  296 (298)
T 1phk_A          259 TVKDLVSRFLVVQPQKRYT----AEEALAHPFFQQYVVEEVR  296 (298)
T ss_dssp             HHHHHHHHHCCSSGGGSCC----HHHHTTSGGGCTTC-----
T ss_pred             HHHHHHHHHccCCcccCCC----HHHHHhChHhhhccchhhc
Confidence            9999999999999999999    9999999999998886654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=6.2e-50  Score=390.84  Aligned_cols=263  Identities=22%  Similarity=0.317  Sum_probs=217.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      -.++|++.+.||+|+||+||+|++.    .+++.||||++.............+.+|+++++.++||||+++++++....
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~   85 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDL----RDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET   85 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEEC----CCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC
Confidence            3468999999999999999999986    478999999998765545555677888999999999999999999987654


Q ss_pred             c----EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          160 W----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       160 ~----~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .    .|+||||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        86 ~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a  163 (311)
T 3ork_A           86 PAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA  163 (311)
T ss_dssp             TTEEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC
T ss_pred             CCCcccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCc
Confidence            3    49999999999999998775  57999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ..........                                                                   ...
T Consensus       164 ~~~~~~~~~~-------------------------------------------------------------------~~~  176 (311)
T 3ork_A          164 RAIADSGNSV-------------------------------------------------------------------TQT  176 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccc-------------------------------------------------------------------ccc
Confidence            6543221100                                                                   011


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQ  393 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~  393 (457)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+.......+.  ...++.++.++|.+
T Consensus       177 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  256 (311)
T 3ork_A          177 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLK  256 (311)
T ss_dssp             -----CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHH
T ss_pred             cccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHH
Confidence            1346999999999999999999999999999999999999999988877766666655433321  24588999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      ||+.||++||+    ..+++.|+|++
T Consensus       257 ~l~~dP~~R~~----~~~~l~~~l~~  278 (311)
T 3ork_A          257 ALAKNPENRYQ----TAAEMRADLVR  278 (311)
T ss_dssp             HTCSSGGGSCS----SHHHHHHHHHH
T ss_pred             HHhcCHhhChh----hHHHHHHHHHH
Confidence            99999999999    99999998876

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=2.4e-49  Score=389.41  Aligned_cols=252  Identities=26%  Similarity=0.468  Sum_probs=196.1

Q ss_pred             CceeE---EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcC
Q 012762           83 DLRFV---HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCP  158 (457)
Q Consensus        83 ~~~~~---~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~  158 (457)
                      +|.+.   +.||+|+||+||+|.++    .+++.||||++.+.      ....+.+|+++|+.+. ||||+++++++.+.
T Consensus         9 ~y~~~~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~   78 (325)
T 3kn6_A            9 HYDLDLKDKPLGEGSFSICRKCVHK----KSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQ   78 (325)
T ss_dssp             HEEECTTSCCSEEETTEEEEEEEET----TTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             ccccccCCCccccCCCeEEEEEEEC----CCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcC
Confidence            45554   78999999999999987    47889999999754      3345677999999996 99999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEeccCCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDFDLS  235 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~DFG~s  235 (457)
                      +..||||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++   .+||+|||++
T Consensus        79 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a  156 (325)
T 3kn6_A           79 LHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFA  156 (325)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTC
T ss_pred             CEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccc
Confidence            9999999999999999998875  6799999999999999999999999999999999999998766   7999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.......                                                                      ..
T Consensus       157 ~~~~~~~~----------------------------------------------------------------------~~  166 (325)
T 3kn6_A          157 RLKPPDNQ----------------------------------------------------------------------PL  166 (325)
T ss_dssp             EECCC---------------------------------------------------------------------------
T ss_pred             eecCCCCC----------------------------------------------------------------------cc
Confidence            64432110                                                                      01


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh-------HHHHHHHHhcccCCCCC--CCCChH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-------ELTLANVVARALEFPKE--PSVPGP  386 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~  386 (457)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+...       .+....+..+.+.++..  ..++++
T Consensus       167 ~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  246 (325)
T 3kn6_A          167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQE  246 (325)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHH
T ss_pred             cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHH
Confidence            133689999999999999999999999999999999999999986432       34555555555444432  357899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +++||.+||..||++||+    +.|+++||||+.
T Consensus       247 ~~~li~~~L~~dP~~Rpt----~~ell~h~w~~~  276 (325)
T 3kn6_A          247 AKDLIQGLLTVDPNKRLK----MSGLRYNEWLQD  276 (325)
T ss_dssp             HHHHHHHHHCCCTTTCCC----TTTSTTCGGGCT
T ss_pred             HHHHHHHHCCCChhHCCC----HHHHhcChhhcc
Confidence            999999999999999999    999999999985

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.5e-49  Score=389.54  Aligned_cols=267  Identities=24%  Similarity=0.309  Sum_probs=214.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh--hHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~--~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ..++|++++.||+|+||+||+|.++    .+|+.||||++........  .....+.+|+++++.++||||+++++++..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   83 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDK----NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH   83 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECS----SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEEC----CCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee
Confidence            3468999999999999999999876    4788999999975432211  112456789999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..|+||||+++ +|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        84 ~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  161 (346)
T 1ua2_A           84 KSNISLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKS  161 (346)
T ss_dssp             TTCCEEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             CCceEEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence            9999999999965 888777653 35689999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                      ....
T Consensus       162 ~~~~~~----------------------------------------------------------------------~~~~  171 (346)
T 1ua2_A          162 FGSPNR----------------------------------------------------------------------AYTH  171 (346)
T ss_dssp             TTSCCC----------------------------------------------------------------------CCCC
T ss_pred             ccCCcc----------------------------------------------------------------------cCCc
Confidence            432110                                                                      0112


Q ss_pred             ccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-----------------
Q 012762          318 FVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-----------------  379 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-----------------  379 (457)
                      .+||+.|+|||++.+. .++.++|||||||++|||++|.+||.+......+..+.........                 
T Consensus       172 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (346)
T 1ua2_A          172 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKS  251 (346)
T ss_dssp             SCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCC
T ss_pred             ccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccc
Confidence            3689999999999765 4899999999999999999999999998887777776653221110                 


Q ss_pred             ---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          380 ---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       380 ---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                               ...++.++.+||.+||..||++||+    +.|+++||||+...|...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~h~~f~~~~~~~~  303 (346)
T 1ua2_A          252 FPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARIT----ATQALKMKYFSNRPGPTP  303 (346)
T ss_dssp             CCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCC----HHHHHTSGGGTSSSCCCC
T ss_pred             cCCCChHHhhccCCHHHHHHHHHHhccChhhCCC----HHHHhcChhhhcCCCCCC
Confidence                     0345688999999999999999999    999999999998776543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=9.5e-49  Score=392.16  Aligned_cols=276  Identities=25%  Similarity=0.346  Sum_probs=217.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++++.||+|+||+||+|.+.    .+++.||||++.... ........+.+|+++++.++||||+++++++...+
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   97 (371)
T 2xrw_A           23 VLKRYQNLKPIGSGAQGIVCAAYDA----ILERNVAIKKLSRPF-QNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQK   97 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEECTT-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCC
T ss_pred             hhhheeEeeeeEecCCEEEEEEEEC----CCCceEEEEEecccc-CChHHHHHHHHHHHHHHhcCCCCccceEEeecccc
Confidence            3578999999999999999999876    478899999997542 23344567788999999999999999999997665


Q ss_pred             ------cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          160 ------WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       160 ------~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                            ..|+||||++ ++|..++.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        98 ~~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg  172 (371)
T 2xrw_A           98 SLEEFQDVYIVMELMD-ANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  172 (371)
T ss_dssp             STTTCCEEEEEEECCS-EEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ccccccceEEEEEcCC-CCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEee
Confidence                  7899999995 57877775    348999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                       
T Consensus       173 ~a~~~~~~~-----------------------------------------------------------------------  181 (371)
T 2xrw_A          173 LARTAGTSF-----------------------------------------------------------------------  181 (371)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            986442110                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC----------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF----------------  377 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~----------------  377 (457)
                      .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+....+..++......                
T Consensus       182 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  261 (371)
T 2xrw_A          182 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYV  261 (371)
T ss_dssp             --------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHH
T ss_pred             ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHH
Confidence            0112469999999999999999999999999999999999999999988776666655432111                


Q ss_pred             ---CCCC---------------------CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCC
Q 012762          378 ---PKEP---------------------SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPF  433 (457)
Q Consensus       378 ---~~~~---------------------~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~  433 (457)
                         +...                     ..+.++++||.+||..||++|||    ++|+|+||||+...........||.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t----~~e~l~hp~~~~~~~~~~~~~~~~~  337 (371)
T 2xrw_A          262 ENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRIS----VDEALQHPYINVWYDPSEAEAPPPK  337 (371)
T ss_dssp             HSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCC----HHHHHHSHHHHTTCCHHHHTCCCCC
T ss_pred             hhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCC----HHHHhCCcchhhhcCccccCCCCCC
Confidence               0000                     01457899999999999999999    9999999999864444445566777


Q ss_pred             CCCCCCc
Q 012762          434 IPRPVTC  440 (457)
Q Consensus       434 ~~~~~~~  440 (457)
                      +|.....
T Consensus       338 ~~~~~~~  344 (371)
T 2xrw_A          338 IPDKQLD  344 (371)
T ss_dssp             CCTTTTC
T ss_pred             CCChhhc
Confidence            7765443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-49  Score=384.48  Aligned_cols=255  Identities=24%  Similarity=0.332  Sum_probs=205.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~  158 (457)
                      ..++|+++++||+|+||+||+|+++    .+++.||||++....... ........|+..+..+ +|+||+++++++.++
T Consensus        55 ~~~~y~~~~~LG~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~  129 (311)
T 3p1a_A           55 FQQSFQRLSRLGHGSYGEVFKVRSK----EDGRLYAVKRSMSPFRGP-KDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG  129 (311)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEET----TTSCEEEEEEESSSCCSH-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             hhhheeeeheeccCCCeEEEEEEEC----CCCeEEEEEEecccccCh-HHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC
Confidence            3467999999999999999999987    478999999986543222 2233344455555554 999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +.+||||||+ +++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus       130 ~~~~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~  207 (311)
T 3p1a_A          130 GILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL  207 (311)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred             CEEEEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence            9999999999 78998877664 356999999999999999999999999999999999999999999999999997654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       208 ~~~~~-----------------------------------------------------------------------~~~~  216 (311)
T 3p1a_A          208 GTAGA-----------------------------------------------------------------------GEVQ  216 (311)
T ss_dssp             C-----------------------------------------------------------------------------CC
T ss_pred             ccCCC-----------------------------------------------------------------------Cccc
Confidence            32111                                                                       0123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      .||+.|+|||++.+ .++.++|||||||++|||++|..||.+..   ....+............++.++.+||.+||+.|
T Consensus       217 ~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  292 (311)
T 3p1a_A          217 EGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE---GWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD  292 (311)
T ss_dssp             CCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH---HHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSS
T ss_pred             CCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc---HHHHHhccCCCcccccCCCHHHHHHHHHHcCCC
Confidence            59999999999987 69999999999999999999977765532   233333332222223458899999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |++||+    +.||++||||+.
T Consensus       293 P~~Rpt----~~ell~hp~~~~  310 (311)
T 3p1a_A          293 PKLRAT----AEALLALPVLRQ  310 (311)
T ss_dssp             TTTSCC----HHHHHTSGGGSC
T ss_pred             hhhCcC----HHHHHhCccccC
Confidence            999999    999999999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.2e-49  Score=410.32  Aligned_cols=258  Identities=31%  Similarity=0.453  Sum_probs=219.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|+++++||+|+||+||+|+++    .++..||+|++.+..... .....+.+|+++|+.++||||+++++++...+.+
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  111 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDK----VTHVERAIKIIRKTSVST-SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNY  111 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEET----TTCCEEEEEEEEC------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEEC----CCCcEEEEEEEeccccCc-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEE
Confidence            46999999999999999999987    478899999998764332 2356678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DFG~s~~~  238 (457)
                      |+|||||.+|+|.+.+...  ..+++..++.++.||+.||.|||++||+||||||+|||++..   +.+||+|||++...
T Consensus       112 ~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~  189 (494)
T 3lij_A          112 YLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF  189 (494)
T ss_dssp             EEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence            9999999999998877665  679999999999999999999999999999999999999764   55999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       190 ~~~~~-----------------------------------------------------------------------~~~~  198 (494)
T 3lij_A          190 ENQKK-----------------------------------------------------------------------MKER  198 (494)
T ss_dssp             BTTBC-----------------------------------------------------------------------BCCC
T ss_pred             CCCcc-----------------------------------------------------------------------cccc
Confidence            32110                                                                       1134


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      +||+.|+|||++.+ .|+.++|||||||++|+|++|..||.+....+.+..+....+.++.  ...++..+++||.+||+
T Consensus       199 ~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  277 (494)
T 3lij_A          199 LGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQ  277 (494)
T ss_dssp             CSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTC
T ss_pred             CCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCC
Confidence            69999999999874 5999999999999999999999999999888888888887766543  35689999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .||.+|||    +.|+|+||||+...
T Consensus       278 ~dp~~R~s----~~e~l~hp~~~~~~  299 (494)
T 3lij_A          278 FDSQRRIS----AQQALEHPWIKEMC  299 (494)
T ss_dssp             SSTTTSCC----HHHHHTCHHHHHHH
T ss_pred             CChhhCcc----HHHHhcCcccccCc
Confidence            99999999    99999999998643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=8.6e-49  Score=389.15  Aligned_cols=256  Identities=24%  Similarity=0.306  Sum_probs=220.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.|.+++.||+|+||+||+|++.    .+++.||||++.............+.+|+++|++++||||+++++++..++..
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~  129 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTA  129 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEc----cCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeE
Confidence            45999999999999999999976    47899999999765444444556788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ||||||+. |+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......
T Consensus       130 ~lv~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~  207 (348)
T 1u5q_A          130 WLVMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  207 (348)
T ss_dssp             EEEEECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred             EEEEecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC
Confidence            99999995 6787777543 267999999999999999999999999999999999999999999999999997543210


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                                                                                                ...+||
T Consensus       208 --------------------------------------------------------------------------~~~~gt  213 (348)
T 1u5q_A          208 --------------------------------------------------------------------------NSFVGT  213 (348)
T ss_dssp             --------------------------------------------------------------------------CCCCSC
T ss_pred             --------------------------------------------------------------------------CcccCC
Confidence                                                                                      123699


Q ss_pred             CCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          322 HEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       322 ~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      +.|+|||++.   +..++.++|||||||++|||++|+.||.+......+..+............+++.+.+||.+||+.|
T Consensus       214 ~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  293 (348)
T 1u5q_A          214 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKI  293 (348)
T ss_dssp             GGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             cceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccC
Confidence            9999999985   4568999999999999999999999999887777666666665544445568999999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |++||+    +++|++||||...
T Consensus       294 P~~Rps----~~~ll~h~~~~~~  312 (348)
T 1u5q_A          294 PQDRPT----SEVLLKHRFVLRE  312 (348)
T ss_dssp             GGGSCC----HHHHTTCHHHHSC
T ss_pred             hhhCcC----HHHHhhChhhhcc
Confidence            999999    9999999999753

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=5.8e-49  Score=407.63  Aligned_cols=258  Identities=29%  Similarity=0.457  Sum_probs=223.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|+++++||+|+||+||+|.++    .+++.||||++.+.... ......+.+|+++|++++||||+++++++...+.+
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   96 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDR----ITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF   96 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEET----TTCCEEEEEEEEHHHHB-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             cceEEeEEEeecCCEEEEEEEEC----CCCCEEEEEEEeccccc-chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEE
Confidence            57999999999999999999986    47889999999875432 23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc---cCCCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR---SDGHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~---~~~~vkl~DFG~s~~~  238 (457)
                      |+|||||.+++|.+.+...  ..+++..++.++.||+.||.|||++||+||||||+|||++   .++.+||+|||++...
T Consensus        97 ~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  174 (486)
T 3mwu_A           97 YIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (486)
T ss_dssp             EEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred             EEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence            9999999999998887665  6799999999999999999999999999999999999995   4567999999998644


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                       .....
T Consensus       175 ~~~~-----------------------------------------------------------------------~~~~~  183 (486)
T 3mwu_A          175 QQNT-----------------------------------------------------------------------KMKDR  183 (486)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             CCCC-----------------------------------------------------------------------ccCCC
Confidence            3211                                                                       01123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~L~  396 (457)
                      +||+.|+|||++.+. |+.++|||||||++|+|++|..||.+....+.+..+....+.++  .+..+++++++||.+||.
T Consensus       184 ~gt~~y~aPE~~~~~-~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  262 (486)
T 3mwu_A          184 IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLT  262 (486)
T ss_dssp             TTGGGGCCGGGGGSC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTC
T ss_pred             cCCCCCCCHHHhCCC-CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcC
Confidence            699999999999874 99999999999999999999999999888888888887766544  335688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .||.+||+    +.++|+||||+...
T Consensus       263 ~dp~~R~t----~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          263 FHPSLRIT----ATQCLEHPWIQKYS  284 (486)
T ss_dssp             SSTTTSCC----HHHHHHCHHHHHTC
T ss_pred             CChhhCcC----HHHHhcCHhhccCc
Confidence            99999999    99999999998643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9.3e-49  Score=380.99  Aligned_cols=255  Identities=29%  Similarity=0.487  Sum_probs=220.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|+++    .+|+.||+|++.....   .....+.+|+++++.++||||+++++++...+..
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQR----LTGKLFALKCIKKSPA---FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHY   81 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceeeeeccCCCCceEEEEEEC----CCCCEEEEEEEecccc---cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEE
Confidence            57999999999999999999976    4788999999975432   2345677899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~~~  238 (457)
                      |+||||+++++|.+++...  +.+++..++.++.||+.||.|||+.||+||||||+|||+   +.++.+||+|||++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~  159 (304)
T 2jam_A           82 YLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKME  159 (304)
T ss_dssp             EEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred             EEEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence            9999999999999888764  569999999999999999999999999999999999999   67889999999997533


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                        ....
T Consensus       160 ~~~~------------------------------------------------------------------------~~~~  167 (304)
T 2jam_A          160 QNGI------------------------------------------------------------------------MSTA  167 (304)
T ss_dssp             CCBT------------------------------------------------------------------------THHH
T ss_pred             CCCc------------------------------------------------------------------------cccc
Confidence            2110                                                                        1123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||.+.........+......++.  ...++.++.+||.+||.
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~  247 (304)
T 2jam_A          168 CGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLE  247 (304)
T ss_dssp             HSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHC
T ss_pred             cCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcC
Confidence            5999999999999999999999999999999999999999998887777777777655443  35688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .||++||+    +.++++||||++.
T Consensus       248 ~dp~~Rps----~~~~l~h~~~~~~  268 (304)
T 2jam_A          248 KDPNERYT----CEKALSHPWIDGN  268 (304)
T ss_dssp             SSTTTSCC----HHHHHTSHHHHSS
T ss_pred             CChhHCcC----HHHHhcCccccCC
Confidence            99999999    9999999999863

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=2.3e-48  Score=396.78  Aligned_cols=256  Identities=25%  Similarity=0.326  Sum_probs=215.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc------CCCCCceEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML------DHPFLPTLY  152 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l------~H~nIv~l~  152 (457)
                      ....+|+++++||+|+||+||+|.++    .+++.||||++....    .....+..|+++++.+      +|+||++++
T Consensus        94 ~~~~ry~~~~~LG~G~fg~V~~a~~~----~~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~  165 (429)
T 3kvw_A           94 HVAYRYEVLKVIGKGSFGQVVKAYDH----KVHQHVALKMVRNEK----RFHRQAAEEIRILEHLRKQDKDNTMNVIHML  165 (429)
T ss_dssp             EETTTEEEEEEEEESSSEEEEEEEET----TTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEE
T ss_pred             cccCcEEEEEEcccCccEEEEEEEEC----CCCcEEEEEEECCcc----chHHHHHHHHHHHHHHhhccccCCcCEEEEE
Confidence            44568999999999999999999876    478999999997542    2345667788888877      577999999


Q ss_pred             EEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC--EEEe
Q 012762          153 ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--IMLT  230 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~--vkl~  230 (457)
                      +++...+.+||||||+ +++|.+++.......+++..++.++.||+.||.|||++|||||||||+||||+.++.  +||+
T Consensus       166 ~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~  244 (429)
T 3kvw_A          166 ENFTFRNHICMTFELL-SMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVI  244 (429)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEEC
T ss_pred             eecccCCeEEEEEecc-CCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEe
Confidence            9999999999999999 579999988876677999999999999999999999999999999999999999887  9999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++......                                                                     
T Consensus       245 DFG~a~~~~~~---------------------------------------------------------------------  255 (429)
T 3kvw_A          245 DFGSSCYEHQR---------------------------------------------------------------------  255 (429)
T ss_dssp             CCTTCEETTCC---------------------------------------------------------------------
T ss_pred             ecccceecCCc---------------------------------------------------------------------
Confidence            99997543211                                                                     


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-----------
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-----------  379 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-----------  379 (457)
                          ..+.+||+.|+|||++.+..++.++|||||||++|||++|..||.+....+.+..++......+.           
T Consensus       256 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~  331 (429)
T 3kvw_A          256 ----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKN  331 (429)
T ss_dssp             ----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHH
T ss_pred             ----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhh
Confidence                11346999999999999999999999999999999999999999998877766665542111000           


Q ss_pred             ----------------------------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHh
Q 012762          380 ----------------------------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       380 ----------------------------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll  413 (457)
                                                                    ....++++.+||.+||+.||++|||    +.|+|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpt----a~e~L  407 (429)
T 3kvw_A          332 FVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMT----PGQAL  407 (429)
T ss_dssp             HBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCC----HHHHH
T ss_pred             ccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCC----HHHHh
Confidence                                                          0123677899999999999999999    99999


Q ss_pred             cCCCCCC
Q 012762          414 RHQFFNG  420 (457)
Q Consensus       414 ~hp~f~~  420 (457)
                      +||||+.
T Consensus       408 ~Hpw~~~  414 (429)
T 3kvw_A          408 RHPWLRR  414 (429)
T ss_dssp             TSTTTC-
T ss_pred             CChhhcc
Confidence            9999985

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=7.8e-49  Score=408.42  Aligned_cols=259  Identities=27%  Similarity=0.407  Sum_probs=221.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh----------hHHHHHHHHHHHHHHcCCCCCce
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR----------NKESRARIEREILEMLDHPFLPT  150 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~----------~~~~~~~~E~~il~~l~H~nIv~  150 (457)
                      .++|+++++||+|+||+||+|.++    .+++.||+|++.+......          .....+.+|+++|+.++||||++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~----~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~  110 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEK----NGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIK  110 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEET----TTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCC
T ss_pred             ccceEEEeEecccCCeEEEEEEEC----CCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCe
Confidence            468999999999999999999987    4788999999987543221          34567888999999999999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CE
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HI  227 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~v  227 (457)
                      +++++.+.+.+|||||||+||+|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++   .+
T Consensus       111 ~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~  188 (504)
T 3q5i_A          111 LFDVFEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNI  188 (504)
T ss_dssp             EEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSE
T ss_pred             EEEEEEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccE
Confidence            999999999999999999999998888765  6799999999999999999999999999999999999998776   69


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||+|||++........                                                                
T Consensus       189 kl~Dfg~a~~~~~~~~----------------------------------------------------------------  204 (504)
T 3q5i_A          189 KIVDFGLSSFFSKDYK----------------------------------------------------------------  204 (504)
T ss_dssp             EECCCTTCEECCTTSC----------------------------------------------------------------
T ss_pred             EEEECCCCEEcCCCCc----------------------------------------------------------------
Confidence            9999999865432110                                                                


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCCh
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPG  385 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~  385 (457)
                             ....+||+.|+|||++.+ .|+.++|||||||++|+|++|..||.+......+..+..+.+.++.  ...+++
T Consensus       205 -------~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  276 (504)
T 3q5i_A          205 -------LRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISD  276 (504)
T ss_dssp             -------BCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCH
T ss_pred             -------cccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCH
Confidence                   113469999999999875 5899999999999999999999999999888888888887765542  256899


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++++||.+||..||.+||+    +.|+|+||||+..
T Consensus       277 ~~~~li~~~L~~dp~~R~t----~~e~l~h~~~~~~  308 (504)
T 3q5i_A          277 EAKELIKLMLTYDYNKRCT----AEEALNSRWIKKY  308 (504)
T ss_dssp             HHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHHT
T ss_pred             HHHHHHHHHcCCChhHCCC----HHHHhcCHhhhhc
Confidence            9999999999999999999    9999999999753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.4e-49  Score=394.46  Aligned_cols=267  Identities=24%  Similarity=0.360  Sum_probs=222.1

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++++.||+|+||+||+|.++    .++..||+|++....  .......+.+|+++|+.++||||+++++++
T Consensus        27 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  100 (360)
T 3eqc_A           27 VGELKDDDFEKISELGAGNGGVVFKVSHK----PSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAF  100 (360)
T ss_dssp             CCCCCGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEE
T ss_pred             ccccccccceeeeeecCCCCeEEEEEEEC----CCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEE
Confidence            34567789999999999999999999986    478899999997642  234456788899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ..++..|+||||+++++|.+++...  +.+++..+..++.||+.||.|||+. ||+||||||+|||++.++.+||+|||+
T Consensus       101 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  178 (360)
T 3eqc_A          101 YSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV  178 (360)
T ss_dssp             EETTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             EECCEEEEEEECCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCC
Confidence            9999999999999999999998875  5699999999999999999999986 999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                        .
T Consensus       179 ~~~~~~~------------------------------------------------------------------------~  186 (360)
T 3eqc_A          179 SGQLIDS------------------------------------------------------------------------M  186 (360)
T ss_dssp             CHHHHHH------------------------------------------------------------------------C
T ss_pred             Ccccccc------------------------------------------------------------------------c
Confidence            7432110                                                                        0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHH--------------------------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA--------------------------  368 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~--------------------------  368 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||..........                          
T Consensus       187 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T 3eqc_A          187 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNK  266 (360)
T ss_dssp             ----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------------
T ss_pred             ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccc
Confidence            112469999999999999999999999999999999999999998765443221                          


Q ss_pred             ----------------HHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          369 ----------------NVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       369 ----------------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                                      .+............++.++.+||.+||..||++||+    +.|+++||||+..+|..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~~~~  336 (360)
T 3eqc_A          267 FGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRSDAEEV  336 (360)
T ss_dssp             -------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCC----HHHHHTSHHHHHHHHSCC
T ss_pred             cccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCC----HHHHhhChHhhcchHhhh
Confidence                            112222222222347889999999999999999999    999999999988666433

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.8e-48  Score=389.36  Aligned_cols=257  Identities=29%  Similarity=0.450  Sum_probs=220.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-----hhhhHHHHHHHHHHHHHHc-CCCCCceEEEEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-----VSRNKESRARIEREILEML-DHPFLPTLYATL  155 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-----~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~  155 (457)
                      ++|++.+.||+|+||+||+|.++    .+|+.||||++.....     ........+.+|+++++.+ +||||+++++++
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~----~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHR----ATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhcccceEEecCCCEEEEEEEEC----CCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            46999999999999999999986    3789999999975431     1122345678899999999 899999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+..||||||++|++|.+++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.+|.+||+|||++
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~  247 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS  247 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcc
Confidence            9999999999999999999988764  57999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                       .
T Consensus       248 ~~~~~~~~-----------------------------------------------------------------------~  256 (365)
T 2y7j_A          248 CHLEPGEK-----------------------------------------------------------------------L  256 (365)
T ss_dssp             EECCTTCC-----------------------------------------------------------------------B
T ss_pred             cccCCCcc-----------------------------------------------------------------------c
Confidence            65432110                                                                       1


Q ss_pred             ccccCCCCccCchhhcCC------CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHH
Q 012762          316 MSFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPA  387 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~------~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  387 (457)
                      ...+||+.|+|||++.+.      .++.++|||||||++|+|++|..||........+..+....+.++.  ...++..+
T Consensus       257 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  336 (365)
T 2y7j_A          257 RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTV  336 (365)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHH
T ss_pred             ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHH
Confidence            124699999999999643      5788999999999999999999999988877777777766655442  24678899


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      .+||.+||..||++||+    +.++++||||+
T Consensus       337 ~~li~~~L~~dP~~Rps----~~ell~hp~f~  364 (365)
T 2y7j_A          337 KDLISRLLQVDPEARLT----AEQALQHPFFE  364 (365)
T ss_dssp             HHHHHHHSCSSTTTSCC----HHHHHHSGGGC
T ss_pred             HHHHHHHcCCChhHCcC----HHHHhcCcccC
Confidence            99999999999999999    99999999997

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=387.17  Aligned_cols=260  Identities=24%  Similarity=0.356  Sum_probs=213.2

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~~~  156 (457)
                      +..++|++++.||+|+||+||+|.+.     +++.||||++..... .......+.+|+++|+.++|  +||+++++++.
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~   79 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI   79 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECT-----TSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeC-----CCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe
Confidence            45568999999999999999999863     688999999976532 23345678889999999976  99999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .++.+|||||+ .+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++
T Consensus        80 ~~~~~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~  155 (343)
T 3dbq_A           80 TDQYIYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIAN  155 (343)
T ss_dssp             CSSEEEEEECC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSC
T ss_pred             eCCEEEEEEeC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeeccccc
Confidence            99999999995 489999999875  6799999999999999999999999999999999999996 6889999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ........                                                                    ....
T Consensus       156 ~~~~~~~~--------------------------------------------------------------------~~~~  167 (343)
T 3dbq_A          156 QMQPDTTS--------------------------------------------------------------------VVKD  167 (343)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCccccc--------------------------------------------------------------------ccCC
Confidence            55321110                                                                    0011


Q ss_pred             cccCCCCccCchhhcC-----------CCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCC
Q 012762          317 SFVGTHEYLAPEIISG-----------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-----------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~  384 (457)
                      ..+||+.|+|||++.+           ..++.++|||||||++|||++|+.||...... ..+..++............+
T Consensus       168 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (343)
T 3dbq_A          168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE  247 (343)
T ss_dssp             --CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSC
T ss_pred             CCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCC
Confidence            3469999999999975           56889999999999999999999999875443 34445554444444445577


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .++.+||.+||+.||.+||+    +.|+++||||+.
T Consensus       248 ~~l~~li~~~L~~dp~~Rpt----~~e~l~hp~~~~  279 (343)
T 3dbq_A          248 KDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQI  279 (343)
T ss_dssp             HHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHS
T ss_pred             HHHHHHHHHHcCCChhHCCC----HHHHHhCccccc
Confidence            89999999999999999999    999999999974

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=4.8e-49  Score=387.91  Aligned_cols=267  Identities=26%  Similarity=0.343  Sum_probs=220.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .....++|++++.||+|+||+||+|+++    .+++.||+|++..... .......+.+|+++++.++||||+++++++.
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   94 (331)
T 4aaa_A           20 YFQSMEKYENLGLVGEGSYGMVMKCRNK----DTGRIVAIKKFLESDD-DKMVKKIAMREIKLLKQLRHENLVNLLEVCK   94 (331)
T ss_dssp             CCBCGGGEEEEEEGGGGTTSSEEEEEET----TTCCEEEEEEEESCSS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             hhhhhhhheeeeEEeecCCEEEEEEEEC----CCCceEEEEEEecCCC-chHHHHHHHHHHHHHhhCCCCCEeeEEEEee
Confidence            4456789999999999999999999986    4788999999865432 2334566778999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+..|+||||+++++|..++...  ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.
T Consensus        95 ~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  172 (331)
T 4aaa_A           95 KKKRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFAR  172 (331)
T ss_dssp             ETTEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             cCCEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCce
Confidence            999999999999999998876654  569999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                      ...
T Consensus       173 ~~~~~~~----------------------------------------------------------------------~~~  182 (331)
T 4aaa_A          173 TLAAPGE----------------------------------------------------------------------VYD  182 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCcc----------------------------------------------------------------------ccC
Confidence            5432110                                                                      001


Q ss_pred             cccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-------------------
Q 012762          317 SFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-------------------  376 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-------------------  376 (457)
                      ...||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.........++.....                   
T Consensus       183 ~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (331)
T 4aaa_A          183 DEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVR  262 (331)
T ss_dssp             -CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCC
T ss_pred             CCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcccccccc
Confidence            23589999999999876 6899999999999999999999999988876666555432111                   


Q ss_pred             CCC----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          377 FPK----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       377 ~~~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .+.          .+.+++.+.+||.+||+.||++||+    +.|+|+||||+..+|.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~  316 (331)
T 4aaa_A          263 LPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPF----CAELLHHDFFQMDGFA  316 (331)
T ss_dssp             CCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC----GGGGGGSHHHHGGGHH
T ss_pred             CccccccchhhhcccchhHHHHHHHHHHhccCcccCCC----HHHHhcCchhccCChh
Confidence            111          1246889999999999999999999    9999999999987664

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-49  Score=391.23  Aligned_cols=256  Identities=25%  Similarity=0.414  Sum_probs=215.3

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-----hHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-----NKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-----~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ++|++.+.||+|+||+||+|+++    .+++.||||++.+......     .....+.+|+++|+.++||||+++++++.
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~   99 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDK----EKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE   99 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEET----TTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             cceEEEeEEEecCCEEEEEEEEC----CCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence            47999999999999999999976    4789999999987643221     13345667999999999999999999999


Q ss_pred             cCCcEEEEEeecCCC-ChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          157 CPRWSCLLTEFCPGG-DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~-sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..+..++||||+.+| +|..++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       100 ~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a  177 (335)
T 3dls_A          100 NQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSA  177 (335)
T ss_dssp             CSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred             eCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence            999999999998666 999888775  57999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      ........                                                                       .
T Consensus       178 ~~~~~~~~-----------------------------------------------------------------------~  186 (335)
T 3dls_A          178 AYLERGKL-----------------------------------------------------------------------F  186 (335)
T ss_dssp             EECCTTCC-----------------------------------------------------------------------B
T ss_pred             eECCCCCc-----------------------------------------------------------------------e
Confidence            65432111                                                                       1


Q ss_pred             ccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ...+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....      .......  ....++.++.+||.+|
T Consensus       187 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~~~~~~--~~~~~~~~l~~li~~~  258 (335)
T 3dls_A          187 YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------TVEAAIH--PPYLVSKELMSLVSGL  258 (335)
T ss_dssp             CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------GTTTCCC--CSSCCCHHHHHHHHHH
T ss_pred             eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH------HHhhccC--CCcccCHHHHHHHHHH
Confidence            13469999999999998886 8899999999999999999999976322      1122222  2334889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcCCCCCC------CCchhh
Q 012762          395 LVKDPTRRMGSKMGATAIKRHQFFNG------VNWALL  426 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~hp~f~~------~~~~~~  426 (457)
                      |..||++||+    +.+|++||||+.      .+|..+
T Consensus       259 L~~dP~~Rps----~~ell~hp~~~~~~~~~~~~~~~~  292 (335)
T 3dls_A          259 LQPVPERRTT----LEKLVTDPWVTQPVNLADYTWEEV  292 (335)
T ss_dssp             TCSSGGGSCC----HHHHHHCTTTTCCCCGGGCCHHHH
T ss_pred             ccCChhhCcC----HHHHhcCccccCCccccccCHHHH
Confidence            9999999999    999999999976      456544

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.9e-49  Score=400.01  Aligned_cols=263  Identities=30%  Similarity=0.467  Sum_probs=210.3

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh-----hHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR-----NKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~-----~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .++|++.+.||+|+||+||+|.++    .+++.||||++.+......     .....+.+|+++|++++||||+++++++
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~  209 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFER----KTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF  209 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE
T ss_pred             hccEEEEeEEeeCCCeEEEEEEEC----CCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            368999999999999999999987    4788999999987653321     2223477899999999999999999998


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CEEEecc
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HIMLTDF  232 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~vkl~DF  232 (457)
                      .. +..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++   .+||+||
T Consensus       210 ~~-~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DF  286 (419)
T 3i6u_A          210 DA-EDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDF  286 (419)
T ss_dssp             ES-SEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred             ec-CceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeec
Confidence            65 4579999999999998877654  6799999999999999999999999999999999999997544   5999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++.......                                                                     
T Consensus       287 G~a~~~~~~~~---------------------------------------------------------------------  297 (419)
T 3i6u_A          287 GHSKILGETSL---------------------------------------------------------------------  297 (419)
T ss_dssp             STTTSCC-------------------------------------------------------------------------
T ss_pred             ccceecCCCcc---------------------------------------------------------------------
Confidence            99865432110                                                                     


Q ss_pred             cccccccCCCCccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHH-HHHHHhcccCCCC--CCCCChH
Q 012762          313 VRSMSFVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-LANVVARALEFPK--EPSVPGP  386 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~  386 (457)
                        ....+||+.|+|||++.+   ..++.++|||||||++|+|++|+.||........ ...+......+..  ...+++.
T Consensus       298 --~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  375 (419)
T 3i6u_A          298 --MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEK  375 (419)
T ss_dssp             ---------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHH
T ss_pred             --ccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHH
Confidence              113469999999999864   5678899999999999999999999987654433 3333334333321  2457899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      +.+||.+||+.||++||+    ++|+|+||||+..+|..
T Consensus       376 ~~~li~~~L~~dP~~Rps----~~e~l~hp~~~~~~~~~  410 (419)
T 3i6u_A          376 ALDLVKKLLVVDPKARFT----TEEALRHPWLQDEDMKR  410 (419)
T ss_dssp             HHHHHHHHSCSSTTTSCC----HHHHHHSGGGCCHHHHH
T ss_pred             HHHHHHHHccCChhHCcC----HHHHhCCcccCChhHHH
Confidence            999999999999999999    99999999999877743

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.8e-48  Score=379.15  Aligned_cols=260  Identities=22%  Similarity=0.344  Sum_probs=214.4

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      .....+..++|++.++||+|+||+||+|++      .+..||||++..... .......+.+|+++|++++||||+++++
T Consensus        29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~------~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~  101 (309)
T 3p86_A           29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEW------HGSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMG  101 (309)
T ss_dssp             ---CBCCGGGEEEEEEEEECSSEEEEEEEE------TTEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccCChhHceeeeEeecCCCeEEEEEEE------CCCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEE
Confidence            345567778999999999999999999975      577899999976543 2334567888999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCCCEEEe
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPD-KRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGHIMLT  230 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~-~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~~vkl~  230 (457)
                      ++...+..|+||||+++++|.+++..... ..+++..++.++.||+.||.|||++|  |+||||||+|||++.++.+||+
T Consensus       102 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~  181 (309)
T 3p86_A          102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVC  181 (309)
T ss_dssp             EECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEEC
T ss_pred             EEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEEC
Confidence            99999999999999999999999876421 23899999999999999999999999  9999999999999999999999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.......                                                                   
T Consensus       182 Dfg~a~~~~~~~~-------------------------------------------------------------------  194 (309)
T 3p86_A          182 DFGLSRLKASTFL-------------------------------------------------------------------  194 (309)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             CCCCCcccccccc-------------------------------------------------------------------
Confidence            9999864321100                                                                   


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                         ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+............++.++.+|
T Consensus       195 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  271 (309)
T 3p86_A          195 ---SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAI  271 (309)
T ss_dssp             ----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHH
T ss_pred             ---ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHH
Confidence               01124699999999999999999999999999999999999999999887777776655555555556799999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |.+||..||.+||+    +.+|++
T Consensus       272 i~~~l~~dP~~Rps----~~~ll~  291 (309)
T 3p86_A          272 IEGCWTNEPWKRPS----FATIMD  291 (309)
T ss_dssp             HHHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHHccCChhhCcC----HHHHHH
Confidence            99999999999999    888876

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=5.9e-49  Score=386.51  Aligned_cols=256  Identities=25%  Similarity=0.376  Sum_probs=209.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~  157 (457)
                      ...++|++++.||+|+||+||+|++.    .+++.||||++...      ....+.+|+++|+.+. ||||+++++++..
T Consensus        33 ~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~  102 (330)
T 3nsz_A           33 GNQDDYQLVRKLGRGKYSEVFEAINI----TNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKD  102 (330)
T ss_dssp             EEGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECSC------CHHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             cCCCceEEEEEecccCCeEEEEEEEC----CCCcEEEEEEeccc------chHHHHHHHHHHHHcCCCCCEEEeeeeecc
Confidence            44578999999999999999999876    47889999999643      3456788999999997 9999999999987


Q ss_pred             --CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCC
Q 012762          158 --PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDL  234 (457)
Q Consensus       158 --~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~  234 (457)
                        ....++||||+++++|..++..     +++..++.++.||+.||.|||++||+||||||+|||++.++ .+||+|||+
T Consensus       103 ~~~~~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~  177 (330)
T 3nsz_A          103 PVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGL  177 (330)
T ss_dssp             TTTCCEEEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CCCCceEEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCC
Confidence              6678999999999999887743     89999999999999999999999999999999999999777 899999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.......                                                                       
T Consensus       178 a~~~~~~~~-----------------------------------------------------------------------  186 (330)
T 3nsz_A          178 AEFYHPGQE-----------------------------------------------------------------------  186 (330)
T ss_dssp             CEECCTTCC-----------------------------------------------------------------------
T ss_pred             ceEcCCCCc-----------------------------------------------------------------------
Confidence            865432111                                                                       


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHh-------------cccCC--
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVA-------------RALEF--  377 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~-------------~~~~~--  377 (457)
                      .....||..|+|||++.+ ..++.++|||||||++|+|++|..||.... ....+..+..             .....  
T Consensus       187 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  266 (330)
T 3nsz_A          187 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDP  266 (330)
T ss_dssp             CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCT
T ss_pred             cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhcccccc
Confidence            112358999999999987 568999999999999999999999995543 2222222111             00000  


Q ss_pred             --------------------CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          378 --------------------PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       378 --------------------~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                          .....++.++.+||.+||..||++|||    ++|+|+||||+++.|+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----a~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          267 RFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLT----AREAMEHPYFYTVVKD  329 (330)
T ss_dssp             HHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCC----HHHHHTSGGGTTCC--
T ss_pred             chhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCC----HHHHhcCccHhhhccC
Confidence                                011226889999999999999999999    9999999999998775

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.1e-49  Score=379.07  Aligned_cols=263  Identities=29%  Similarity=0.461  Sum_probs=224.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ++|++.+.||+|+||+||+|+++    .+++.||+|++........   .....+.+|+++|++++||||+++++++...
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   80 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQK----GTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK   80 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhHHhhcccCceEEEEEEEc----CCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC
Confidence            47999999999999999999986    3788999999976543221   1356788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFDL  234 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG~  234 (457)
                      +..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+||+++.++    .+||+|||+
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~  158 (283)
T 3bhy_A           81 TDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI  158 (283)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             CeEEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence            9999999999999999998764  5799999999999999999999999999999999999998877    899999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       159 ~~~~~~~~~-----------------------------------------------------------------------  167 (283)
T 3bhy_A          159 AHKIEAGNE-----------------------------------------------------------------------  167 (283)
T ss_dssp             CEECC---------------------------------------------------------------------------
T ss_pred             ceeccCCCc-----------------------------------------------------------------------
Confidence            764432110                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~  392 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.........+......++.  ...++..+.+||.
T Consensus       168 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  247 (283)
T 3bhy_A          168 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIR  247 (283)
T ss_dssp             ----CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHH
T ss_pred             ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHH
Confidence            01235899999999999999999999999999999999999999998877777776665544432  2457889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      +||..||++||+    +.++++||||+.++|..
T Consensus       248 ~~l~~dp~~Rps----~~~~l~h~~~~~~~~~~  276 (283)
T 3bhy_A          248 RLLVKDPKRRMT----IAQSLEHSWIKAIRRRN  276 (283)
T ss_dssp             TTSCSSGGGSCC----HHHHHHCHHHHHHHHCC
T ss_pred             HHccCCHhHCcC----HHHHHhCHHHHHHHHHh
Confidence            999999999999    99999999999766543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.6e-48  Score=373.34  Aligned_cols=260  Identities=23%  Similarity=0.391  Sum_probs=217.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.++    .+++.||+|++.....  ......+.+|+++++.++||||+++++++...+..
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   80 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQ   80 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEEGGGC--TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             cceEEEEEeecCCCcEEEEEEEC----CCCcEEEEEEeeeccc--hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEE
Confidence            57999999999999999999976    4788999999976532  23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++......
T Consensus        81 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  158 (276)
T 2yex_A           81 YLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN  158 (276)
T ss_dssp             EEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred             EEEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence            9999999999998887653  57999999999999999999999999999999999999999999999999997544211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ...                                                                    .......||
T Consensus       159 ~~~--------------------------------------------------------------------~~~~~~~~~  170 (276)
T 2yex_A          159 NRE--------------------------------------------------------------------RLLNKMCGT  170 (276)
T ss_dssp             TEE--------------------------------------------------------------------CCBCCCCSC
T ss_pred             cch--------------------------------------------------------------------hcccCCccc
Confidence            100                                                                    001134689


Q ss_pred             CCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          322 HEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       322 ~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      +.|+|||++.+..+ +.++|||||||++|+|++|..||...... .....+.......+....++..+.+||.+||+.||
T Consensus       171 ~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  250 (276)
T 2yex_A          171 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENP  250 (276)
T ss_dssp             GGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSST
T ss_pred             cCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCc
Confidence            99999999988775 78999999999999999999999876543 23333443333334445688999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ++||+    +.||++||||+..
T Consensus       251 ~~Rps----~~~il~~~~~~~~  268 (276)
T 2yex_A          251 SARIT----IPDIKKDRWYNKP  268 (276)
T ss_dssp             TTSCC----HHHHTTCTTTTCC
T ss_pred             hhCCC----HHHHhcCccccCh
Confidence            99999    9999999999864

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=7.3e-49  Score=385.35  Aligned_cols=268  Identities=23%  Similarity=0.380  Sum_probs=206.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      ++|++++.||+|+||+||+|+++    .+|+.||||++....  .......+.+|+++|++++||||+++++++.+..  
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   79 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNK----VDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPE   79 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEET----TTCCEEEEEEEECCS--TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSC
T ss_pred             hcCceeeEecCCCCeEEEEEEEc----CCCcEEEEEEeecCC--chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccc
Confidence            57999999999999999999986    478899999997543  2345577889999999999999999999986543  


Q ss_pred             -------------------------------------------------------cEEEEEeecCCCChHHHHHhCCC-C
Q 012762          160 -------------------------------------------------------WSCLLTEFCPGGDLHVLRQRQPD-K  183 (457)
Q Consensus       160 -------------------------------------------------------~~~lV~E~~~~~sL~~~~~~~~~-~  183 (457)
                                                                             +.|+|||||++++|.+++..... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  159 (332)
T 3qd2_B           80 KWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLE  159 (332)
T ss_dssp             HHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGG
T ss_pred             hhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCcc
Confidence                                                                   37999999999999999887532 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCC
Q 012762          184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC  263 (457)
Q Consensus       184 ~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (457)
                      ...+..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.............              
T Consensus       160 ~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~--------------  225 (332)
T 3qd2_B          160 DREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLT--------------  225 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC----------------------
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccc--------------
Confidence            356667899999999999999999999999999999999999999999999876643221110000              


Q ss_pred             CCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhh
Q 012762          264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWT  343 (457)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwS  343 (457)
                                                                  ..+........+||+.|+|||++.+..++.++||||
T Consensus       226 --------------------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  261 (332)
T 3qd2_B          226 --------------------------------------------PMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFS  261 (332)
T ss_dssp             --------------------------------------------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHH
T ss_pred             --------------------------------------------cccccccccccCCCcCccChHHhcCCCCcchhhHHH
Confidence                                                        000001112346999999999999999999999999


Q ss_pred             hhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          344 LGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       344 lG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      |||++|||++|..|+..  .......+...  ..+. ....++++.+||.+||+.||++||+    +.|+++||||+++
T Consensus       262 lG~il~el~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~~~l~~~~f~~~  332 (332)
T 3qd2_B          262 LGLILFELLYSFSTQME--RVRIITDVRNL--KFPLLFTQKYPQEHMMVQDMLSPSPTERPE----ATDIIENAIFENL  332 (332)
T ss_dssp             HHHHHHHHHSCCCCHHH--HHHHHHHHHTT--CCCHHHHHHCHHHHHHHHHHHCSSGGGSCC----HHHHHHSTTCCCC
T ss_pred             HHHHHHHHHHcCCChhH--HHHHHHHhhcc--CCCcccccCChhHHHHHHHHccCCCCcCCC----HHHHhhchhhhcC
Confidence            99999999998876532  11122222211  1221 1234577899999999999999999    9999999999864

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=5.3e-49  Score=389.72  Aligned_cols=269  Identities=21%  Similarity=0.371  Sum_probs=229.6

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH--------------HHHHHHHHHHHHH
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK--------------ESRARIEREILEM  142 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~--------------~~~~~~E~~il~~  142 (457)
                      .....++|++.+.||+|+||+||+|.+      +++.||+|++..........              ...+.+|+++++.
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   99 (348)
T 2pml_X           26 KDKYINDYRIIRTLNQGKFNKIILCEK------DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITD   99 (348)
T ss_dssp             SCEEETTEEEEEEEECCSSCCEEEEEE------TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTT
T ss_pred             cccccCceEEEEEEcCCCCeEEEEEEc------CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHh
Confidence            445668999999999999999999986      68899999998765432221              1678889999999


Q ss_pred             cCCCCCceEEEEEEcCCcEEEEEeecCCCChHHH------HHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCC
Q 012762          143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL------RQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLK  215 (457)
Q Consensus       143 l~H~nIv~l~~~~~~~~~~~lV~E~~~~~sL~~~------~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIK  215 (457)
                      ++||||+++++++...+..|+||||+++++|.++      +.......+++..++.++.||+.||.|||+ .||+|||||
T Consensus       100 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~  179 (348)
T 2pml_X          100 IKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVK  179 (348)
T ss_dssp             CCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCC
T ss_pred             CCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCC
Confidence            9999999999999999999999999999999887      555445789999999999999999999999 999999999


Q ss_pred             CCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcc
Q 012762          216 PENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRK  295 (457)
Q Consensus       216 p~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (457)
                      |+|||++.++.+||+|||++......                                                      
T Consensus       180 p~Nil~~~~~~~kl~dfg~~~~~~~~------------------------------------------------------  205 (348)
T 2pml_X          180 PSNILMDKNGRVKLSDFGESEYMVDK------------------------------------------------------  205 (348)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECBTT------------------------------------------------------
T ss_pred             hHhEEEcCCCcEEEeccccccccccc------------------------------------------------------
Confidence            99999999999999999997644211                                                      


Q ss_pred             ccCCCCCCCcccccCCccccccccCCCCccCchhhcCC-CCCc-cchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHh
Q 012762          296 KKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-GHGN-AVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVA  372 (457)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~-~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~  372 (457)
                                        ......||..|+|||++.+. .++. ++|||||||++|||++|..||..... ......+..
T Consensus       206 ------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~  267 (348)
T 2pml_X          206 ------------------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRT  267 (348)
T ss_dssp             ------------------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTS
T ss_pred             ------------------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhc
Confidence                              01123589999999999987 5666 99999999999999999999998776 566666666


Q ss_pred             cccCCCCC-----------------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          373 RALEFPKE-----------------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       373 ~~~~~~~~-----------------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                      ....++..                 ..++.++.+||.+||+.||.+||+    +.|+++||||+..+|..+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps----~~e~l~hp~f~~~~~~~~~  335 (348)
T 2pml_X          268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERIT----SEDALKHEWLADTNIEDLR  335 (348)
T ss_dssp             CCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSGGGTTCCHHHHH
T ss_pred             cCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCC----HHHHhcCccccCCCHHHHH
Confidence            65555532                 458899999999999999999999    9999999999999997654

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=3.8e-48  Score=386.66  Aligned_cols=259  Identities=20%  Similarity=0.327  Sum_probs=214.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC---
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP---  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~---  158 (457)
                      ++|++++.||+|+||+||+|.+.    .+++.||||++....  .......+.+|+++|++++||||+++++++...   
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  100 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDN----LNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE  100 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT
T ss_pred             ccEEEEEEeecCCCeEEEEEEEC----CCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcc
Confidence            58999999999999999999876    478899999997532  233456788899999999999999999999655   


Q ss_pred             --CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          159 --RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       159 --~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                        ...|+||||++ ++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus       101 ~~~~~~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  176 (364)
T 3qyz_A          101 QMKDVYIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLAR  176 (364)
T ss_dssp             TCCCEEEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             ccceEEEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceE
Confidence              46899999995 699988876   569999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ........                                                                   .....
T Consensus       177 ~~~~~~~~-------------------------------------------------------------------~~~~~  189 (364)
T 3qyz_A          177 VADPDHDH-------------------------------------------------------------------TGFLT  189 (364)
T ss_dssp             ECCGGGCB-------------------------------------------------------------------CCTTC
T ss_pred             ecCCCCCc-------------------------------------------------------------------ccccc
Confidence            54321110                                                                   00011


Q ss_pred             cccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC-----------------
Q 012762          317 SFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP-----------------  378 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~-----------------  378 (457)
                      ..+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+......+..++......+                 
T Consensus       190 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  269 (364)
T 3qyz_A          190 EYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLL  269 (364)
T ss_dssp             CCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHH
T ss_pred             ccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHH
Confidence            3469999999998765 4589999999999999999999999998877666666553211111                 


Q ss_pred             ---C---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          379 ---K---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       379 ---~---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                         .         ...++.++.+||.+||..||++||+    +.|+|+||||+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~~~~~  320 (364)
T 3qyz_A          270 SLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIE----VEQALAHPYLEQY  320 (364)
T ss_dssp             TSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGTTT
T ss_pred             hcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCcchhhc
Confidence               0         1346789999999999999999999    9999999999975

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-48  Score=393.08  Aligned_cols=261  Identities=24%  Similarity=0.365  Sum_probs=214.6

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--CCCCceEEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~~~~  156 (457)
                      +...+|++++.||+|+||+||+|.+.     .++.||||++..... .......+.+|+++|++++  |+||+++++++.
T Consensus        53 ~~~~~y~~~~~LG~G~fg~Vy~~~~~-----~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~  126 (390)
T 2zmd_A           53 VKGRIYSILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI  126 (390)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECT-----TCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             ccCCceEEEEEEccCCCeEEEEEEcC-----CCCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe
Confidence            34456999999999999999999864     478999999976543 2345567888999999996  599999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .++.+||||| +.+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+++
T Consensus       127 ~~~~~~lv~E-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~  202 (390)
T 2zmd_A          127 TDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIAN  202 (390)
T ss_dssp             CSSEEEEEEE-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSC
T ss_pred             cCCEEEEEEe-cCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccc
Confidence            9999999999 5589999998875  5789999999999999999999999999999999999995 6899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ........                                                                    ....
T Consensus       203 ~~~~~~~~--------------------------------------------------------------------~~~~  214 (390)
T 2zmd_A          203 QMQPDTTS--------------------------------------------------------------------VVKD  214 (390)
T ss_dssp             CC-----------------------------------------------------------------------------C
T ss_pred             cccCCCcc--------------------------------------------------------------------ccCC
Confidence            55321110                                                                    0011


Q ss_pred             cccCCCCccCchhhcC-----------CCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCC
Q 012762          317 SFVGTHEYLAPEIISG-----------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-----------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~  384 (457)
                      ..+||+.|+|||++.+           ..++.++|||||||++|||++|+.||...... ..+..++......+.....+
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (390)
T 2zmd_A          215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE  294 (390)
T ss_dssp             CSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSC
T ss_pred             CCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccch
Confidence            3469999999999976           35889999999999999999999999876443 45555555555554445568


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .++.+||.+||..||.+||+    +.|+++||||+..
T Consensus       295 ~~~~~li~~~L~~dP~~Rps----~~ell~hp~~~~~  327 (390)
T 2zmd_A          295 KDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQIQ  327 (390)
T ss_dssp             HHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHSC
T ss_pred             HHHHHHHHHHcccChhhCCC----HHHHhhCcCcccc
Confidence            89999999999999999999    9999999999754

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.2e-48  Score=390.98  Aligned_cols=258  Identities=27%  Similarity=0.370  Sum_probs=201.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++++.||+|+||+||+|.+.    .+|+.||||++.... .......++.+|+++|+.++||||+++++++...  
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~  102 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDT----KTGLRVAVKKLSRPF-QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS  102 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEET----TTTEEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             CCceEEeeEEeecCCeEEEEEEEC----CCCCEEEEEEeCccc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCc
Confidence            368999999999999999999876    488999999996532 2334556778899999999999999999999654  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                          ...|+|||++ +++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       103 ~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~  178 (367)
T 2fst_X          103 LEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  178 (367)
T ss_dssp             GGGCCCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC---
T ss_pred             cccCCeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccc
Confidence                5679999999 8999888765   5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.....                                                                         
T Consensus       179 a~~~~~~-------------------------------------------------------------------------  185 (367)
T 2fst_X          179 ARHTADE-------------------------------------------------------------------------  185 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            8543211                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC----------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF----------------  377 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~----------------  377 (457)
                      ....+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+.+....+..++......                
T Consensus       186 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~  265 (367)
T 2fst_X          186 MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNY  265 (367)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHH
T ss_pred             CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHH
Confidence            112469999999999987 568999999999999999999999999988766665554421111                


Q ss_pred             -------CC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          378 -------PK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       378 -------~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                             +.      ....++++.+||.+||..||.+||+    +.|+|+||||+.....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t----~~e~L~hp~~~~~~~~  321 (367)
T 2fst_X          266 IQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQYHDP  321 (367)
T ss_dssp             HHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTTCCG
T ss_pred             HhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcC----HHHHhcChhhhhccCC
Confidence                   10      1245788999999999999999999    9999999999976554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2.2e-48  Score=386.14  Aligned_cols=267  Identities=26%  Similarity=0.346  Sum_probs=216.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--  157 (457)
                      ..++|+++++||+|+||+||+|+++    .+|+.||+|++..... .......+.+|+++|+.++||||+++++++..  
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   89 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHR----KTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKA   89 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEET----TTCCEEEEEECCCSSC-SSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-
T ss_pred             cccceeEEEEEecCCCcEEEEEEEC----CCCCEEEEEEEecccc-cccchHHHHHHHHHHHhccCCCcccHhheeeccc
Confidence            4578999999999999999999986    4788999999865532 22234556789999999999999999999876  


Q ss_pred             ------CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          158 ------PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       158 ------~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                            .+.+|+||||++ ++|...+... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|
T Consensus        90 ~~~~~~~~~~~lv~e~~~-~~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~D  167 (351)
T 3mi9_A           90 SPYNRCKGSIYLVFDFCE-HDLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLAD  167 (351)
T ss_dssp             -------CEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECC
T ss_pred             cccccCCceEEEEEeccC-CCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEcc
Confidence                  446899999996 5776666543 35699999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++.........                                                                  
T Consensus       168 fg~a~~~~~~~~~~------------------------------------------------------------------  181 (351)
T 3mi9_A          168 FGLARAFSLAKNSQ------------------------------------------------------------------  181 (351)
T ss_dssp             CTTCEECCCCSSSS------------------------------------------------------------------
T ss_pred             chhccccccccccc------------------------------------------------------------------
Confidence            99986553211110                                                                  


Q ss_pred             ccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CC------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PS------  382 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~------  382 (457)
                      .......+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.........+.......+..  +.      
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  261 (351)
T 3mi9_A          182 PNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYEL  261 (351)
T ss_dssp             CCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGG
T ss_pred             ccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchh
Confidence            0111234689999999999874 58999999999999999999999999988777766665543333221  11      


Q ss_pred             ----------------------CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          383 ----------------------VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       383 ----------------------~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                                            .++.+.+||.+||+.||++||+    ++|+|+||||+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          262 YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID----SDDALNHDFFWSDPM  320 (351)
T ss_dssp             GTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGSSSC
T ss_pred             hcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCC----HHHHhCCCCcCCCCC
Confidence                                  1567899999999999999999    999999999987544

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3e-48  Score=391.71  Aligned_cols=263  Identities=25%  Similarity=0.394  Sum_probs=209.8

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ....+|++.+.||+|+||+||+|++..    ++ .||+|.+.....       ...+|+++|+.++||||+++++++...
T Consensus        37 ~~~~~Y~~~~~lG~G~~g~V~~a~~~~----~~-~~aikk~~~~~~-------~~~~E~~il~~l~h~niv~l~~~~~~~  104 (394)
T 4e7w_A           37 QREIAYTNCKVIGNGSFGVVFQAKLVE----SD-EVAIKKVLQDKR-------FKNRELQIMRIVKHPNVVDLKAFFYSN  104 (394)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEETT----TE-EEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEE
T ss_pred             cccceEEEeEEEeeCCCeEEEEEEECC----CC-eEEEEEEecCcc-------hHHHHHHHHHhCCCCCcceEEEEEEec
Confidence            344679999999999999999999762    34 488887754321       123599999999999999999999554


Q ss_pred             C------cEEEEEeecCCCChHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc-cCCCEEEe
Q 012762          159 R------WSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR-SDGHIMLT  230 (457)
Q Consensus       159 ~------~~~lV~E~~~~~sL~~~~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~-~~~~vkl~  230 (457)
                      +      ++|+||||++++.+..+... .....+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+
T Consensus       105 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~  184 (394)
T 4e7w_A          105 GDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLI  184 (394)
T ss_dssp             SSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEEC
T ss_pred             CCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEe
Confidence            3      38899999966544433321 2246799999999999999999999999999999999999999 78999999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.......                                                                   
T Consensus       185 DFG~a~~~~~~~~-------------------------------------------------------------------  197 (394)
T 4e7w_A          185 DFGSAKILIAGEP-------------------------------------------------------------------  197 (394)
T ss_dssp             CCTTCEECCTTCC-------------------------------------------------------------------
T ss_pred             eCCCcccccCCCC-------------------------------------------------------------------
Confidence            9999865432110                                                                   


Q ss_pred             CccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc---------------
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA---------------  374 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~---------------  374 (457)
                          ....+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+.+....+..++...               
T Consensus       198 ----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~  273 (394)
T 4e7w_A          198 ----NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNY  273 (394)
T ss_dssp             ----CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGG
T ss_pred             ----CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhh
Confidence                1134689999999999876 48999999999999999999999999988776666655421               


Q ss_pred             --cCCCC----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhc
Q 012762          375 --LEFPK----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRC  428 (457)
Q Consensus       375 --~~~~~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~  428 (457)
                        ..++.          ...+++++.+||.+||+.||.+||+    +.|+++||||+.++|.....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~~~~  335 (394)
T 4e7w_A          274 MEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLT----AIEALCHPFFDELRTGEARM  335 (394)
T ss_dssp             SSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSGGGSTTTSSCCCC
T ss_pred             hhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCC----HHHHhcChhhhhhccccccC
Confidence              11111          1237789999999999999999999    99999999999988865443

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.5e-48  Score=376.66  Aligned_cols=252  Identities=20%  Similarity=0.323  Sum_probs=211.5

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++++.||+|+||+||+|++.    .+++.||+|++.............+.+|+++++.++||||+++++++..
T Consensus         7 ~~~~~~y~i~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~   82 (294)
T 4eqm_A            7 KIINERYKIVDKLGGGGMSTVYLAEDT----ILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE   82 (294)
T ss_dssp             SCEETTEEEEEEEEEETTEEEEEEEET----TTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC
T ss_pred             hHhhccEEEEEEEccCCCEEEEEEEEC----CCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee
Confidence            445578999999999999999999876    4788999999866544444556788899999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++..|+||||++|++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..
T Consensus        83 ~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~  160 (294)
T 4eqm_A           83 DDCYYLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKA  160 (294)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTT
T ss_pred             CCeEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccc
Confidence            99999999999999999998875  5799999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                     ....
T Consensus       161 ~~~~~~~---------------------------------------------------------------------~~~~  171 (294)
T 4eqm_A          161 LSETSLT---------------------------------------------------------------------QTNH  171 (294)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccc---------------------------------------------------------------------ccCc
Confidence            4321110                                                                     1113


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---CCCCCChHHHHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---KEPSVPGPAKDLIAQL  394 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ll~~~  394 (457)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|+.||.+..........+.......   ....+++.+.++|.+|
T Consensus       172 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  251 (294)
T 4eqm_A          172 VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRA  251 (294)
T ss_dssp             ---CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHH
T ss_pred             cccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHH
Confidence            4699999999999999999999999999999999999999998877666555554433221   2346889999999999


Q ss_pred             hhhCCCCCCC
Q 012762          395 LVKDPTRRMG  404 (457)
Q Consensus       395 L~~dP~~Rps  404 (457)
                      |..||.+||+
T Consensus       252 l~~dp~~R~~  261 (294)
T 4eqm_A          252 TEKDKANRYK  261 (294)
T ss_dssp             SCSSGGGSCS
T ss_pred             hcCCHhHccc
Confidence            9999999996

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.7e-48  Score=395.18  Aligned_cols=258  Identities=24%  Similarity=0.402  Sum_probs=208.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      ..+|++.+.||+|+||+||+|+++    .+|+.||||++.....       ...+|+++|+.++|+||+++++++...  
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~----~~~~~vaiK~~~~~~~-------~~~~E~~il~~l~hpniv~l~~~~~~~~~  121 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLC----DSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGE  121 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEECCTT-------SCCHHHHHHHTCCCTTBCCEEEEEEEEET
T ss_pred             cceEEeeeEEeeCCCEEEEEEEEC----CCCcEEEEEEecccch-------hHHHHHHHHHHcCCCCccceeeEEeccCC
Confidence            447999999999999999999986    4788999999865321       223599999999999999999988432  


Q ss_pred             ----CcEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEec
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTD  231 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~D  231 (457)
                          .++++||||+++ +|..++..  .....+++..++.++.||+.||.|||++||+||||||+||||+.+ +.+||+|
T Consensus       122 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~D  200 (420)
T 1j1b_A          122 KKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCD  200 (420)
T ss_dssp             TTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECC
T ss_pred             CCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEecc
Confidence                246899999954 66555442  234679999999999999999999999999999999999999965 5689999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++......                                                                     
T Consensus       201 FG~a~~~~~~~---------------------------------------------------------------------  211 (420)
T 1j1b_A          201 FGSAKQLVRGE---------------------------------------------------------------------  211 (420)
T ss_dssp             CTTCEECCTTC---------------------------------------------------------------------
T ss_pred             chhhhhcccCC---------------------------------------------------------------------
Confidence            99986543111                                                                     


Q ss_pred             ccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc-----------------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR-----------------  373 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~-----------------  373 (457)
                        .....+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+....+.+..++..                 
T Consensus       212 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~  289 (420)
T 1j1b_A          212 --PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYT  289 (420)
T ss_dssp             --CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCC
T ss_pred             --CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh
Confidence              01134689999999999875 6899999999999999999999999998877666665542                 


Q ss_pred             ccCCCC----------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          374 ALEFPK----------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       374 ~~~~~~----------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      .+.++.          ...++.++.+||.+||..||.+||+    +.|+++||||+.+.+..
T Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t----~~e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          290 EFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT----PLEACAHSFFDELRDPN  347 (420)
T ss_dssp             CCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGGGGCTT
T ss_pred             hhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCC----HHHHhCCHhhccccccc
Confidence            112221          1346789999999999999999999    99999999998876643

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=4e-48  Score=379.92  Aligned_cols=264  Identities=25%  Similarity=0.381  Sum_probs=219.0

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~  157 (457)
                      ...++|++.+.||+|+||+||+|++.    .+++.||||++....    .....+.+|+++++++ +||||+++++++..
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           21 DPAGIFELVELVGNGTYGQVYKGRHV----KTGQLAAIKVMDVTG----DEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             CCTTTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCS----STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEEC----CCCCeEEEEEEecCc----ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            34578999999999999999999986    478899999996532    2345677899999999 89999999999976


Q ss_pred             ------CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          158 ------PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       158 ------~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                            .+..|+||||+++++|.+++.......+++..++.++.||+.||.|||+.||+|+||||+|||++.++.+||+|
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~D  172 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVD  172 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEee
Confidence                  46789999999999999999876556799999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++........                                                                    
T Consensus       173 fg~~~~~~~~~~--------------------------------------------------------------------  184 (326)
T 2x7f_A          173 FGVSAQLDRTVG--------------------------------------------------------------------  184 (326)
T ss_dssp             CTTTC---------------------------------------------------------------------------
T ss_pred             CcCceecCcCcc--------------------------------------------------------------------
Confidence            999764431100                                                                    


Q ss_pred             ccccccccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChH
Q 012762          312 DVRSMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                        ......||+.|+|||++.     +..++.++|||||||++|+|++|..||.+.........+............++..
T Consensus       185 --~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (326)
T 2x7f_A          185 --RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKK  262 (326)
T ss_dssp             --------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSCSCHH
T ss_pred             --ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccccCHH
Confidence              011246999999999997     4568999999999999999999999998877766666555554444444568899


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      +.+||.+||..||.+||+    +.++++||||+...+.
T Consensus       263 l~~li~~~l~~dp~~Rps----~~~ll~hp~~~~~~~~  296 (326)
T 2x7f_A          263 FQSFIESCLVKNHSQRPA----TEQLMKHPFIRDQPNE  296 (326)
T ss_dssp             HHHHHHHHCCSSGGGSCC----HHHHHTSHHHHCCTTH
T ss_pred             HHHHHHHHhccChhhCCC----HHHHhhChHHhhCccc
Confidence            999999999999999999    9999999999987664

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=6.7e-48  Score=372.26  Aligned_cols=257  Identities=23%  Similarity=0.381  Sum_probs=214.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--  157 (457)
                      ....|++.+.||+|+||+||+|.+.    .++..||+|++..... .......+.+|+++|+.++||||+++++++..  
T Consensus        24 ~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~~va~k~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   98 (290)
T 1t4h_A           24 DGRFLKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV   98 (290)
T ss_dssp             TSCEEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES
T ss_pred             CceeEEeeeeccCCCCeEEEEeEec----CCceEEEEEEecchhh-CHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc
Confidence            3446999999999999999999876    4788999999976543 23456778889999999999999999999865  


Q ss_pred             --CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEc-cCCCEEEecc
Q 012762          158 --PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVR-SDGHIMLTDF  232 (457)
Q Consensus       158 --~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~-~~~~vkl~DF  232 (457)
                        ...+|+||||+++++|.+++...  ..+++..++.++.||+.||.|||+.|  |+||||||+|||++ .++.+||+||
T Consensus        99 ~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Df  176 (290)
T 1t4h_A           99 KGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDL  176 (290)
T ss_dssp             SSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCT
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeC
Confidence              35689999999999999999875  66999999999999999999999999  99999999999998 7899999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++.......                                                                      
T Consensus       177 g~~~~~~~~~----------------------------------------------------------------------  186 (290)
T 1t4h_A          177 GLATLKRASF----------------------------------------------------------------------  186 (290)
T ss_dssp             TGGGGCCTTS----------------------------------------------------------------------
T ss_pred             CCcccccccc----------------------------------------------------------------------
Confidence            9975432111                                                                      


Q ss_pred             cccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLI  391 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll  391 (457)
                        .....||+.|+|||++.+ .++.++|||||||++|+|++|+.||............+..... .......++++.+||
T Consensus       187 --~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  263 (290)
T 1t4h_A          187 --AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEII  263 (290)
T ss_dssp             --BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHH
T ss_pred             --cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHH
Confidence              112359999999999875 4899999999999999999999999886655444444333322 222345678999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+||..||.+||+    +.++++||||+.
T Consensus       264 ~~~l~~dp~~Rps----~~ell~h~~f~~  288 (290)
T 1t4h_A          264 EGCIRQNKDERYS----IKDLLNHAFFQE  288 (290)
T ss_dssp             HHHSCSSGGGSCC----HHHHHTSGGGC-
T ss_pred             HHHccCChhhCCC----HHHHhhCccccc
Confidence            9999999999999    999999999985

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.7e-48  Score=373.46  Aligned_cols=262  Identities=25%  Similarity=0.303  Sum_probs=204.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++++.||+|+||+||+|.+.    .+++.||+|++..... .......+..+..+++.++||||+++++++..
T Consensus         3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~   77 (290)
T 3fme_A            3 EVKADDLEPIMELGRGAYGVVEKMRHV----PSGQIMAVKRIRATVN-SQEQKRLLMDLDISMRTVDCPFTVTFYGALFR   77 (290)
T ss_dssp             CCCGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEC---C-HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             cccHHhhhhHHhcCCCCCeEEEEEEec----CCCeEEEEEEeecccC-cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeec
Confidence            466789999999999999999999986    4789999999976432 22223334444555777899999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ++..|+||||++ ++|.+++..  .....+++..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+
T Consensus        78 ~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T 3fme_A           78 EGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGI  156 (290)
T ss_dssp             SSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC--
T ss_pred             cCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCC
Confidence            999999999995 588776654  2346799999999999999999999998 999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       157 ~~~~~~~~~-----------------------------------------------------------------------  165 (290)
T 3fme_A          157 SGYLVDDVA-----------------------------------------------------------------------  165 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            865432111                                                                       


Q ss_pred             cccccCCCCccCchhh----cCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          315 SMSFVGTHEYLAPEII----SGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l----~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                      .....||+.|+|||++    .+..++.++|||||||++|+|++|+.||.... ........+...........++.++.+
T Consensus       166 ~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (290)
T 3fme_A          166 KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVD  245 (290)
T ss_dssp             ----CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHH
T ss_pred             ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCHHHHH
Confidence            0122589999999996    45568999999999999999999999998643 334444444444443344568999999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||.+||+.||++||+    +.|+++||||+.
T Consensus       246 li~~~l~~~p~~Rpt----~~e~l~hp~f~~  272 (290)
T 3fme_A          246 FTSQCLKKNSKERPT----YPELMQHPFFTL  272 (290)
T ss_dssp             HHHHHTCSSGGGSCC----HHHHTTSHHHHH
T ss_pred             HHHHHhhcChhhCcC----HHHHHhCccccc
Confidence            999999999999999    999999999974

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=9.7e-48  Score=381.40  Aligned_cols=273  Identities=25%  Similarity=0.331  Sum_probs=217.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|++.+.||+|+||+||+|.++    .+|+.||||++...  ........+.+|+++|+.++||||+++++++...  
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   83 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHK----PTGEIVAIKKIEPF--DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSF   83 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCC--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCS
T ss_pred             ccceEEeeEEcCCCCeEEEEEEEC----CCCcEEEEEeeccc--ccchHHHHHHHHHHHHHhCcCCCcCCeeeeeccccc
Confidence            468999999999999999999976    47899999999643  2233455677899999999999999999988654  


Q ss_pred             ---CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          159 ---RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       159 ---~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                         ...|+||||+. ++|..++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        84 ~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a  159 (353)
T 2b9h_A           84 ENFNEVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLA  159 (353)
T ss_dssp             TTCCCEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             CccceEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccc
Confidence               67899999995 699888876   56999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      .............                                                            .......
T Consensus       160 ~~~~~~~~~~~~~------------------------------------------------------------~~~~~~~  179 (353)
T 2b9h_A          160 RIIDESAADNSEP------------------------------------------------------------TGQQSGM  179 (353)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             cccccccccccCc------------------------------------------------------------cccccch
Confidence            7654321110000                                                            0000111


Q ss_pred             ccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----------------
Q 012762          316 MSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----------------  377 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----------------  377 (457)
                      ..++||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+......+..+.......                 
T Consensus       180 ~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
T 2b9h_A          180 VEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREY  259 (353)
T ss_dssp             CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHH
T ss_pred             hhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHH
Confidence            23579999999999865 668999999999999999999999999877665554443211110                 


Q ss_pred             -------CC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          378 -------PK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       378 -------~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                             +.      ...++.++.+||.+||..||++||+    +.|+++||||+...|....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~~~~~  318 (353)
T 2b9h_A          260 IKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRIT----AKEALEHPYLQTYHDPNDE  318 (353)
T ss_dssp             HHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTTCCTTSS
T ss_pred             hhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCC----HHHHhcCccccccCCcccc
Confidence                   00      1357889999999999999999999    9999999999998876543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.2e-48  Score=391.07  Aligned_cols=258  Identities=26%  Similarity=0.410  Sum_probs=210.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-  157 (457)
                      ...++|++.+.||+|+||+||+|++.    .+|+.||||++.....       ...+|+++|+.++||||+++++++.. 
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~----~~~~~vAiK~~~~~~~-------~~~~E~~il~~l~hpnIv~l~~~~~~~   72 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDI----ESGKRFALKKVLQDPR-------YKNRELDIMKVLDHVNIIKLVDYFYTT   72 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEET----TTCCEEEEEEEECCTT-------SCCHHHHHHTTCCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEEEeccCEEEEEEEEC----CCCCEEEEEEEecCcc-------hHHHHHHHHHHcCCCCccchhheeeec
Confidence            34568999999999999999999986    4789999999865421       12359999999999999999999843 


Q ss_pred             -------------------------------------CCcEEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHH
Q 012762          158 -------------------------------------PRWSCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVV  198 (457)
Q Consensus       158 -------------------------------------~~~~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~  198 (457)
                                                           ..++++||||++ ++|...+..  .....+++..++.++.||+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~  151 (383)
T 3eb0_A           73 GDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLF  151 (383)
T ss_dssp             -------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence                                                 345899999996 687766653  2346799999999999999


Q ss_pred             HHHHHHHHcCceeecCCCCCeEEc-cCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 012762          199 VALEFLHMMGIIYRDLKPENVLVR-SDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCII  277 (457)
Q Consensus       199 ~~L~yLH~~~iiHrDIKp~NIll~-~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (457)
                      .||.|||++||+||||||+|||++ .++.+||+|||+++.......                                  
T Consensus       152 ~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~----------------------------------  197 (383)
T 3eb0_A          152 RAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP----------------------------------  197 (383)
T ss_dssp             HHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC----------------------------------
T ss_pred             HHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC----------------------------------
Confidence            999999999999999999999998 678999999999865432111                                  


Q ss_pred             CCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCC
Q 012762          278 PNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTT  356 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~  356 (457)
                                                           .....||+.|+|||++.+.. ++.++|||||||++|||++|+.
T Consensus       198 -------------------------------------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  240 (383)
T 3eb0_A          198 -------------------------------------SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKP  240 (383)
T ss_dssp             -------------------------------------CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -------------------------------------CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCC
Confidence                                                 11236899999999998765 8999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHhccc-----------------CCC----------CCCCCChHHHHHHHHHhhhCCCCCCCCCcCh
Q 012762          357 PFKGIDHELTLANVVARAL-----------------EFP----------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGA  409 (457)
Q Consensus       357 Pf~~~~~~~~~~~~~~~~~-----------------~~~----------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~  409 (457)
                      ||.+....+.+..++....                 .++          ....++.++.+||.+||+.||++||+    +
T Consensus       241 pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----~  316 (383)
T 3eb0_A          241 LFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRIN----P  316 (383)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCC----H
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCC----H
Confidence            9999887777766654211                 111          12347788999999999999999999    9


Q ss_pred             HHHhcCCCCCCCCc
Q 012762          410 TAIKRHQFFNGVNW  423 (457)
Q Consensus       410 ~~ll~hp~f~~~~~  423 (457)
                      .|+++||||+.+.+
T Consensus       317 ~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          317 YEAMAHPFFDHLRN  330 (383)
T ss_dssp             HHHHTSGGGHHHHH
T ss_pred             HHHhcCHHHHHHHh
Confidence            99999999987544

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.7e-48  Score=378.05  Aligned_cols=274  Identities=23%  Similarity=0.319  Sum_probs=200.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .+.+..++|++.+.||+|+||+||+|.+.    .+++.||||++.....  ......+.+|+++++.++||||+++++++
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~   82 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCA----PKKEKVAIKRINLEKC--QTSMDELLKEIQAMSQCHHPNIVSYYTSF   82 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC--------CEEEEECCC------------------CCCCCCCTTBCCEEEEE
T ss_pred             ccccchhhhhhhheeccccceEEEEEEEC----CCCcEEEEEEEEhhhc--chhHHHHHHHHHHHhhcCCCCEeeEEEEE
Confidence            35567789999999999999999999876    3788999999975432  23345677899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHh------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQR------QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~------~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl  229 (457)
                      ...+..|+||||+++++|.+++..      .....+++..++.++.||+.||.|||++||+||||||+|||++.++.+||
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl  162 (303)
T 2vwi_A           83 VVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQI  162 (303)
T ss_dssp             ESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEE
T ss_pred             eecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEE
Confidence            999999999999999999988874      13456999999999999999999999999999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||++...........                                                               
T Consensus       163 ~dfg~~~~~~~~~~~~~---------------------------------------------------------------  179 (303)
T 2vwi_A          163 ADFGVSAFLATGGDITR---------------------------------------------------------------  179 (303)
T ss_dssp             CCCHHHHHCC----------------------------------------------------------------------
T ss_pred             EeccchheeccCCCccc---------------------------------------------------------------
Confidence            99999765432110000                                                               


Q ss_pred             CCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--------CC
Q 012762          310 PLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--------KE  380 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--------~~  380 (457)
                        ........||+.|+|||++.+ ..++.++|||||||++|+|++|..||....................        ..
T Consensus       180 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (303)
T 2vwi_A          180 --NKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEML  257 (303)
T ss_dssp             ----------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCC
T ss_pred             --hhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhh
Confidence              000113469999999999976 5689999999999999999999999998776655554443322111        12


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ..++.++.+||.+||..||.+||+    +.++++||||+...+.
T Consensus       258 ~~~~~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          258 KKYGKSFRKMISLCLQKDPEKRPT----AAELLRHKFFQKAKNK  297 (303)
T ss_dssp             CCCCHHHHHHHHHHCCSSGGGSCC----HHHHHTSTTC------
T ss_pred             hhhhHHHHHHHHHHccCChhhCcC----HHHHhhChhhhcCCCC
Confidence            357789999999999999999999    9999999999987664

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.1e-47  Score=384.52  Aligned_cols=258  Identities=27%  Similarity=0.361  Sum_probs=214.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++.+.||+|+||+||+|.++    .+|+.||||++.... ........+.+|+++++.++||||+++++++...+..
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  116 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDK----RSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSL  116 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSS
T ss_pred             ccEEEEeEEecCCCeEEEEEEEC----CCCCEEEEEEecccc-cchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCc
Confidence            68999999999999999999987    478999999997543 2334456778899999999999999999999877654


Q ss_pred             ------EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          162 ------CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       162 ------~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                            |+||||+. ++|..++.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       117 ~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a  191 (371)
T 4exu_A          117 RNFYDFYLVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA  191 (371)
T ss_dssp             TTCCCCEEEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred             ccceeEEEEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence                  99999995 78876653    45999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.....                                                                         .
T Consensus       192 ~~~~~~-------------------------------------------------------------------------~  198 (371)
T 4exu_A          192 RHADAE-------------------------------------------------------------------------M  198 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccC-------------------------------------------------------------------------c
Confidence            543211                                                                         1


Q ss_pred             ccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----------------
Q 012762          316 MSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----------------  377 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----------------  377 (457)
                      ...+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+....+.+..++......                 
T Consensus       199 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
T 4exu_A          199 TGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYI  278 (371)
T ss_dssp             -CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHH
T ss_pred             CCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhh
Confidence            12468999999999987 678999999999999999999999999887776666655422111                 


Q ss_pred             ------CC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          378 ------PK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       378 ------~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                            +.      ...+++++.+||.+||+.||++||+    +.|+|+||||+......-
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~~~~~~  335 (371)
T 4exu_A          279 QSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLT----AAQALTHPFFEPFRDPEE  335 (371)
T ss_dssp             HHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTTCCGGG
T ss_pred             hccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCC----HHHHhcCcccccCCCccc
Confidence                  00      1346889999999999999999999    999999999998766543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=8.2e-48  Score=378.47  Aligned_cols=263  Identities=22%  Similarity=0.323  Sum_probs=219.6

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||+||+|+++... ..+..||||++....  .......+.+|+++|+.++||||+++++++
T Consensus        43 ~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~  119 (325)
T 3kul_A           43 TREIEASRIHIEKIIGSGDSGEVCYGRLRVPG-QRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVV  119 (325)
T ss_dssp             CCBCCGGGEEEEEEEEETTTEEEEEEEECCTT-SCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             ccccChhHeEEeeEEEeCCCcEEEEEEEecCC-CCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            45677789999999999999999999986422 245679999997542  234456788899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..++..||||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a  198 (325)
T 3kul_A          120 TRGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS  198 (325)
T ss_dssp             CGGGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSC
T ss_pred             EeCCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcc
Confidence            9999999999999999999998654 357999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +..........                                                                   ..
T Consensus       199 ~~~~~~~~~~~-------------------------------------------------------------------~~  211 (325)
T 3kul_A          199 RVLEDDPDAAY-------------------------------------------------------------------TT  211 (325)
T ss_dssp             EECC----CCE-------------------------------------------------------------------EC
T ss_pred             cccccCcccee-------------------------------------------------------------------ec
Confidence            76542211100                                                                   00


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+... ...+....++..+.+||.+|
T Consensus       212 ~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~  290 (325)
T 3kul_A          212 TGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG-YRLPAPMGCPHALHQLMLDC  290 (325)
T ss_dssp             C---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHH
T ss_pred             cCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC-CCCCCCCCcCHHHHHHHHHH
Confidence            11246889999999998899999999999999999998 99999988877766665544 45556667999999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |..||++||+    +.+|++
T Consensus       291 l~~dp~~Rps----~~eil~  306 (325)
T 3kul_A          291 WHKDRAQRPR----FSQIVS  306 (325)
T ss_dssp             TCSSGGGSCC----HHHHHH
T ss_pred             ccCChhhCcC----HHHHHH
Confidence            9999999999    887765

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.2e-47  Score=376.46  Aligned_cols=265  Identities=25%  Similarity=0.351  Sum_probs=218.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEE-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLD-  156 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~-  156 (457)
                      .++|++.+.||+|+||+||+|++..   .+++.||+|++....... .....+.+|+++++.+   +||||+++++++. 
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~   85 (326)
T 1blx_A           10 DQQYECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGEE-GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV   85 (326)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEEEEEBCTT-SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEE
T ss_pred             hhceeeeeeecccccEEEEEEEecC---CCCEEEEEEEeccCcccc-cCCchhhHHHHHHHhhhccCCCCeEeeeeeeee
Confidence            3689999999999999999999742   367899999997543211 1223455677777766   8999999999987 


Q ss_pred             ----cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEecc
Q 012762          157 ----CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDF  232 (457)
Q Consensus       157 ----~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DF  232 (457)
                          .....++||||+. ++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+||
T Consensus        86 ~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Df  164 (326)
T 1blx_A           86 SRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADF  164 (326)
T ss_dssp             EECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred             cccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecC
Confidence                5567899999996 69999998876667999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++.......                                                                      
T Consensus       165 g~~~~~~~~~----------------------------------------------------------------------  174 (326)
T 1blx_A          165 GLARIYSFQM----------------------------------------------------------------------  174 (326)
T ss_dssp             CSCCCCCGGG----------------------------------------------------------------------
T ss_pred             cccccccCCC----------------------------------------------------------------------
Confidence            9986443110                                                                      


Q ss_pred             cccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----C---------
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----P---------  378 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----~---------  378 (457)
                       ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+......+..++......     +         
T Consensus       175 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  253 (326)
T 1blx_A          175 -ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQA  253 (326)
T ss_dssp             -GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGG
T ss_pred             -CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhh
Confidence             0112368999999999999999999999999999999999999999988777776665421100     0         


Q ss_pred             -----------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          379 -----------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       379 -----------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                                 ....++..+.+||.+||..||++||+    +.++++||||+.++|..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          254 FHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYFQDLERCK  307 (326)
T ss_dssp             SCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTCCCCC
T ss_pred             hcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCC----HHHHhcCccccccchhh
Confidence                       11347888999999999999999999    99999999999988753

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=5.3e-48  Score=374.78  Aligned_cols=265  Identities=28%  Similarity=0.433  Sum_probs=219.4

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|++++.||+|+||+||+|.++    .+++.||+|++....   ......+.+|+++++.++||||+++++++...
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~----~~~~~~aiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   88 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNK----ETGALAAAKVIETKS---EEELEDYIVEIEILATCDHPYIVKLLGAYYHD   88 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEET----TTCCEEEEEEEC-------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC
T ss_pred             CCccceeecceeccCCCeEEEEEEEc----CCCcEEEEEEecCCC---HHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC
Confidence            34568999999999999999999986    478899999987542   23456778899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|+||||+++++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++...
T Consensus        89 ~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  167 (302)
T 2j7t_A           89 GKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKN  167 (302)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHH
T ss_pred             CeEEEEEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccc
Confidence            9999999999999999887653 256999999999999999999999999999999999999999999999999986321


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ...                                                                      .......
T Consensus       168 ~~~----------------------------------------------------------------------~~~~~~~  177 (302)
T 2j7t_A          168 LKT----------------------------------------------------------------------LQKRDSF  177 (302)
T ss_dssp             HHH----------------------------------------------------------------------HHC----
T ss_pred             ccc----------------------------------------------------------------------ccccccc
Confidence            100                                                                      0001124


Q ss_pred             cCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHH
Q 012762          319 VGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIA  392 (457)
Q Consensus       319 ~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~  392 (457)
                      .||+.|+|||++.     +..++.++|||||||++|+|++|..||...........+...... ......++..+.++|.
T Consensus       178 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  257 (302)
T 2j7t_A          178 IGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLK  257 (302)
T ss_dssp             -CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHH
T ss_pred             cCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHH
Confidence            6999999999983     667899999999999999999999999988776666665554332 2233457889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      +||..||++||+    +.+|++||||+.+.|..
T Consensus       258 ~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~  286 (302)
T 2j7t_A          258 IALDKNPETRPS----AAQLLEHPFVSSITSNK  286 (302)
T ss_dssp             HHSCSCTTTSCC----HHHHTTSTTTTTCCCCH
T ss_pred             HHcccChhhCCC----HHHHhcChHHhhhccch
Confidence            999999999999    99999999999988854

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=6.3e-48  Score=383.64  Aligned_cols=266  Identities=19%  Similarity=0.282  Sum_probs=221.3

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||+||+|++... +..+++.||||++....  .......+.+|+++|+++ +||||+++++
T Consensus        16 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpniv~~~~   93 (359)
T 3vhe_A           16 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLG   93 (359)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC--CHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence            3456778999999999999999999986532 23577899999997542  233456788899999999 7999999999


Q ss_pred             EEEcCC-cEEEEEeecCCCChHHHHHhCCC--------------------------------------------------
Q 012762          154 TLDCPR-WSCLLTEFCPGGDLHVLRQRQPD--------------------------------------------------  182 (457)
Q Consensus       154 ~~~~~~-~~~lV~E~~~~~sL~~~~~~~~~--------------------------------------------------  182 (457)
                      ++...+ ..|+|||||++|+|.+++.....                                                  
T Consensus        94 ~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (359)
T 3vhe_A           94 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL  173 (359)
T ss_dssp             EECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------
T ss_pred             eeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccccc
Confidence            998755 48999999999999999876532                                                  


Q ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccc
Q 012762          183 --------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV  248 (457)
Q Consensus       183 --------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~  248 (457)
                                    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++........    
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~----  249 (359)
T 3vhe_A          174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDY----  249 (359)
T ss_dssp             ----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTC----
T ss_pred             chhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccc----
Confidence                          12899999999999999999999999999999999999999999999999998654321110    


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCch
Q 012762          249 SDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE  328 (457)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  328 (457)
                                                                                      .......||+.|+|||
T Consensus       250 ----------------------------------------------------------------~~~~~~~~t~~y~aPE  265 (359)
T 3vhe_A          250 ----------------------------------------------------------------VRKGDARLPLKWMAPE  265 (359)
T ss_dssp             ----------------------------------------------------------------EEC--CEECGGGCCHH
T ss_pred             ----------------------------------------------------------------hhccccCCCceeEChh
Confidence                                                                            0111335899999999


Q ss_pred             hhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          329 IISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       329 ~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      ++.+..++.++|||||||++|||++ |..||.+..........+......+....+++++.++|.+||..||.+||+   
T Consensus       266 ~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps---  342 (359)
T 3vhe_A          266 TIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT---  342 (359)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC---
T ss_pred             hhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCC---
Confidence            9999999999999999999999998 999999877666666666555555555678999999999999999999999   


Q ss_pred             ChHHHhcC
Q 012762          408 GATAIKRH  415 (457)
Q Consensus       408 ~~~~ll~h  415 (457)
                       +.||++|
T Consensus       343 -~~ell~~  349 (359)
T 3vhe_A          343 -FSELVEH  349 (359)
T ss_dssp             -HHHHHHH
T ss_pred             -HHHHHHH
Confidence             9999876

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=7.8e-48  Score=378.84  Aligned_cols=262  Identities=25%  Similarity=0.359  Sum_probs=216.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC------CCc
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP------FLP  149 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~------nIv  149 (457)
                      .+.+..++|++.+.||+|+||+||+|.+..   .+++.||||++....    .....+.+|+++++.++|+      +|+
T Consensus         8 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~vavK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~i~   80 (339)
T 1z57_A            8 SGDVLSARYEIVDTLGEGAFGKVVECIDHK---AGGRHVAVKIVKNVD----RYCEAARSEIQVLEHLNTTDPNSTFRCV   80 (339)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHHCTTCTTCBC
T ss_pred             cCCCccCceEEEEEEecCCCeEEEEEEecC---CCCcEEEEEEEecCC----chhHHHHHHHHHHHHhhhcCCCCceeeE
Confidence            344556799999999999999999998732   368899999997532    3456677899999988655      499


Q ss_pred             eEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc------
Q 012762          150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS------  223 (457)
Q Consensus       150 ~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~------  223 (457)
                      ++++++...+..|+||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.      
T Consensus        81 ~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~  159 (339)
T 1z57_A           81 QMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEA  159 (339)
T ss_dssp             CEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEE
T ss_pred             eeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccc
Confidence            9999999999999999999 999999998876567999999999999999999999999999999999999987      


Q ss_pred             -------------CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          224 -------------DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       224 -------------~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                                   ++.+||+|||++......                                                 
T Consensus       160 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  190 (339)
T 1z57_A          160 YNPKIKRDERTLINPDIKVVDFGSATYDDEH-------------------------------------------------  190 (339)
T ss_dssp             EC----CEEEEESCCCEEECCCSSCEETTSC-------------------------------------------------
T ss_pred             cCCccccccccccCCCceEeeCcccccCccc-------------------------------------------------
Confidence                         668999999997543211                                                 


Q ss_pred             chhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV  370 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~  370 (457)
                                              .....||+.|+|||++.+..++.++|||||||++|||++|..||...+..+....+
T Consensus       191 ------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  246 (339)
T 1z57_A          191 ------------------------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMM  246 (339)
T ss_dssp             ------------------------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHH
T ss_pred             ------------------------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence                                    01236999999999999999999999999999999999999999987766555444


Q ss_pred             HhcccCCCC------------------------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcC
Q 012762          371 VARALEFPK------------------------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMG  408 (457)
Q Consensus       371 ~~~~~~~~~------------------------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~  408 (457)
                      .......+.                                          ....++++.+||.+||..||.+||+    
T Consensus       247 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----  322 (339)
T 1z57_A          247 ERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT----  322 (339)
T ss_dssp             HHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC----
T ss_pred             HHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccC----
Confidence            332221111                                          1112456889999999999999999    


Q ss_pred             hHHHhcCCCCCCCC
Q 012762          409 ATAIKRHQFFNGVN  422 (457)
Q Consensus       409 ~~~ll~hp~f~~~~  422 (457)
                      +.|+++||||+.++
T Consensus       323 ~~ell~hp~f~~~~  336 (339)
T 1z57_A          323 LREALKHPFFDLLK  336 (339)
T ss_dssp             HHHHTTSGGGGGGG
T ss_pred             HHHHhcCHHHHHHh
Confidence            99999999998654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=2.3e-48  Score=391.43  Aligned_cols=261  Identities=21%  Similarity=0.294  Sum_probs=209.0

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--------C
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--------H  145 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--------H  145 (457)
                      ...+.+..++|+++++||+|+||+||+|++.    .+++.||||++....    .....+.+|+++|+.+.        |
T Consensus        29 ~~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~  100 (397)
T 1wak_A           29 VKIGDLFNGRYHVIRKLGWGHFSTVWLSWDI----QGKKFVAMKVVKSAE----HYTETALDEIRLLKSVRNSDPNDPNR  100 (397)
T ss_dssp             SCTTCEETTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHSCTTCGGG
T ss_pred             EehhhhcCCeEEEEEEeeecCCeeEEEEEec----CCCeEEEEEEEecCC----cchHHHHHHHHHHHHHhhcCCCCCCc
Confidence            3344555688999999999999999999876    478999999997542    34566778999999985        7


Q ss_pred             CCCceEEEEEE----cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeE
Q 012762          146 PFLPTLYATLD----CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVL  220 (457)
Q Consensus       146 ~nIv~l~~~~~----~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIl  220 (457)
                      +||+++++++.    ....+||||||+ +++|...+.......+++..++.++.||+.||.|||++ ||+||||||+|||
T Consensus       101 ~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIl  179 (397)
T 1wak_A          101 EMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENIL  179 (397)
T ss_dssp             GGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEE
T ss_pred             ceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHee
Confidence            88999999997    566899999999 67776666665556799999999999999999999998 9999999999999


Q ss_pred             EccCC-------------------------------------------------CEEEeccCCCcCCCCCCcccccccCC
Q 012762          221 VRSDG-------------------------------------------------HIMLTDFDLSLKGDNSTSTAQLVSDQ  251 (457)
Q Consensus       221 l~~~~-------------------------------------------------~vkl~DFG~s~~~~~~~~~~~~~~~~  251 (457)
                      |+.++                                                 .+||+|||++......          
T Consensus       180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----------  249 (397)
T 1wak_A          180 LSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----------  249 (397)
T ss_dssp             ECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----------
T ss_pred             EeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----------
Confidence            98775                                                 7999999997544211          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhc
Q 012762          252 SPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIIS  331 (457)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~  331 (457)
                                                                                     ....+||+.|+|||++.
T Consensus       250 ---------------------------------------------------------------~~~~~gt~~y~aPE~~~  266 (397)
T 1wak_A          250 ---------------------------------------------------------------FTEDIQTRQYRSLEVLI  266 (397)
T ss_dssp             ---------------------------------------------------------------SCSCCSCGGGCCHHHHH
T ss_pred             ---------------------------------------------------------------CccCCCCCcccCChhhc
Confidence                                                                           01235999999999999


Q ss_pred             CCCCCccchhhhhhHHHHHHhcCCCCCCCCCh------HHHHHHHHhcccCCC---------------------------
Q 012762          332 GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH------ELTLANVVARALEFP---------------------------  378 (457)
Q Consensus       332 ~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~------~~~~~~~~~~~~~~~---------------------------  378 (457)
                      +..++.++|||||||++|||++|+.||.+...      ...+..+.......+                           
T Consensus       267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (397)
T 1wak_A          267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK  346 (397)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence            99999999999999999999999999986542      222222222111111                           


Q ss_pred             -------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 -------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 -------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                   .....+..+.+||.+||+.||++||+    +.|||+||||++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~~~~  397 (397)
T 1wak_A          347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRAT----AAECLRHPWLNS  397 (397)
T ss_dssp             CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCC----HHHHHTSGGGGC
T ss_pred             CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCC----HHHHhhCccccC
Confidence                         00112356889999999999999999    999999999974

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.4e-49  Score=398.14  Aligned_cols=263  Identities=20%  Similarity=0.209  Sum_probs=201.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc--CCCCCceEE------
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML--DHPFLPTLY------  152 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l--~H~nIv~l~------  152 (457)
                      ..+|++.+.||+|+||+||+|+++    .+++.||||++.............++.|+++++.|  +||||++++      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p  136 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDV----ERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLP  136 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCC
T ss_pred             ceeeeeeeeccCCCCEEEEEEEEC----CCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEee
Confidence            345999999999999999999986    47899999999886554555666778886666555  599988755      


Q ss_pred             -EEEEcC-----------------CcEEEEEeecCCCChHHHHHhCCCCCCCHHHH------HHHHHHHHHHHHHHHHcC
Q 012762          153 -ATLDCP-----------------RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAV------RFYASEVVVALEFLHMMG  208 (457)
Q Consensus       153 -~~~~~~-----------------~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~------~~i~~qi~~~L~yLH~~~  208 (457)
                       +++...                 ..+|||||||+ ++|.+++.... ..+.+...      ..++.||+.||.|||++|
T Consensus       137 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~  214 (371)
T 3q60_A          137 SDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSKG  214 (371)
T ss_dssp             CEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence             455433                 23799999997 89999987642 23444444      567799999999999999


Q ss_pred             ceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccccc
Q 012762          209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCL  288 (457)
Q Consensus       209 iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (457)
                      |+||||||+||||+.+|.+||+|||+++......                                              
T Consensus       215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~~----------------------------------------------  248 (371)
T 3q60_A          215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRG----------------------------------------------  248 (371)
T ss_dssp             EEETTCSGGGEEECTTSCEEECCGGGEEETTCEE----------------------------------------------
T ss_pred             CccCcCCHHHEEECCCCCEEEEecceeeecCCCc----------------------------------------------
Confidence            9999999999999999999999999986443111                                              


Q ss_pred             CcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHH
Q 012762          289 HPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT  366 (457)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~  366 (457)
                                                 ....||+.|+|||++.+  ..++.++|||||||++|||++|+.||.+......
T Consensus       249 ---------------------------~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~  301 (371)
T 3q60_A          249 ---------------------------PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIK  301 (371)
T ss_dssp             ---------------------------EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCT
T ss_pred             ---------------------------cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccc
Confidence                                       02247799999999987  6799999999999999999999999987632211


Q ss_pred             --H-----HHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          367 --L-----ANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       367 --~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                        .     .......+.++....+++.+.+||.+||+.||++||+    +.++++||||+.++|...
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~~~  364 (371)
T 3q60_A          302 GSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLL----PLEAMETPEFLQLQNEIS  364 (371)
T ss_dssp             TCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCC----HHHHTTSHHHHHHHHHHH
T ss_pred             cchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCC----HHHHhcCHHHHHHHHHHh
Confidence              0     1111123344444578999999999999999999999    999999999999888654

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-48  Score=390.10  Aligned_cols=275  Identities=17%  Similarity=0.266  Sum_probs=224.1

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+..++|+++++||+|+||+||+|.+... +..+++.||||++...  ........+.+|+.+|++++||||+++++++
T Consensus        66 ~~~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~  143 (367)
T 3l9p_A           66 KEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVS  143 (367)
T ss_dssp             CBCCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             hhcCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc--cChhhHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            456678999999999999999999996532 2346789999999643  2234455678899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC---CE
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP-----DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG---HI  227 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~-----~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~---~v  227 (457)
                      ...+..|+|||||++|+|.+++....     ...+++..++.++.||+.||.|||++||+||||||+||||+.+|   .+
T Consensus       144 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~  223 (367)
T 3l9p_A          144 LQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVA  223 (367)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCE
T ss_pred             ecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceE
Confidence            99999999999999999999987743     24589999999999999999999999999999999999999655   59


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||+|||+++.......                                                                
T Consensus       224 kL~DFG~a~~~~~~~~----------------------------------------------------------------  239 (367)
T 3l9p_A          224 KIGDFGMARDIYRAGY----------------------------------------------------------------  239 (367)
T ss_dssp             EECCCHHHHHHHHHSS----------------------------------------------------------------
T ss_pred             EECCCccccccccccc----------------------------------------------------------------
Confidence            9999999753311000                                                                


Q ss_pred             ccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGP  386 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (457)
                          ........||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+.... .......++..
T Consensus       240 ----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~  314 (367)
T 3l9p_A          240 ----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-RMDPPKNCPGP  314 (367)
T ss_dssp             ----CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-CCCCCTTCCHH
T ss_pred             ----cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC-CCCCCccCCHH
Confidence                001113458999999999999999999999999999999998 999999988777766665543 33444568999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      +.+||.+||+.||++||+    +.+|++|.++-..+...+
T Consensus       315 l~~li~~~l~~dP~~Rps----~~eil~~l~~~~~~~~~~  350 (367)
T 3l9p_A          315 VYRIMTQCWQHQPEDRPN----FAIILERIEYCTQDPDVI  350 (367)
T ss_dssp             HHHHHHHHTCSSGGGSCC----HHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHcCCCHhHCcC----HHHHHHHHHHHhhChhhc
Confidence            999999999999999999    999999977654444433

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.5e-47  Score=368.05  Aligned_cols=253  Identities=19%  Similarity=0.288  Sum_probs=207.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      ++|++++.||+|+||+||+|.++    .+++.||+|++...... ......+.+|+.++..+ +||||+++++++...+.
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~   85 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKR----LDGCIYAIKRSKKPLAG-SVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDH   85 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCCTT-SHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTE
T ss_pred             chhhhhhhhcCCCceEEEEEEEc----CCCceEEEEEecccccc-cHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCe
Confidence            57999999999999999999986    47889999999764322 23456677799999998 99999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC--------------
Q 012762          161 SCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD--------------  224 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~--------------  224 (457)
                      .|+||||+++++|.+++....  ...+++..++.++.||+.||.|||++||+||||||+|||++.+              
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~  165 (289)
T 1x8b_A           86 MLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD  165 (289)
T ss_dssp             EEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC----------------
T ss_pred             EEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence            999999999999999887642  2568999999999999999999999999999999999999844              


Q ss_pred             -----CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          225 -----GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       225 -----~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                           ..+||+|||++.......                                                         
T Consensus       166 ~~~~~~~~kl~Dfg~~~~~~~~~---------------------------------------------------------  188 (289)
T 1x8b_A          166 WASNKVMFKIGDLGHVTRISSPQ---------------------------------------------------------  188 (289)
T ss_dssp             ----CCCEEECCCTTCEETTCSC---------------------------------------------------------
T ss_pred             ccCCceEEEEcccccccccCCcc---------------------------------------------------------
Confidence                 479999999875443110                                                         


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP  378 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~  378 (457)
                                       ...||+.|+|||++.+. .++.++|||||||++|+|++|.+++....   ....+..... ..
T Consensus       189 -----------------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---~~~~~~~~~~-~~  247 (289)
T 1x8b_A          189 -----------------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---QWHEIRQGRL-PR  247 (289)
T ss_dssp             -----------------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---HHHHHHTTCC-CC
T ss_pred             -----------------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---HHHHHHcCCC-CC
Confidence                             12489999999999876 56789999999999999999998875532   2333333322 22


Q ss_pred             CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       379 ~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ....+++++.+||.+||..||++||+    +.++++||||+..
T Consensus       248 ~~~~~~~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~  286 (289)
T 1x8b_A          248 IPQVLSQEFTELLKVMIHPDPERRPS----AMALVKHSVLLSA  286 (289)
T ss_dssp             CSSCCCHHHHHHHHHHTCSSGGGSCC----HHHHHTCTTC---
T ss_pred             CCcccCHHHHHHHHHHhCCCcccCCC----HHHHhhChHhhhh
Confidence            23458899999999999999999999    9999999999863

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.4e-47  Score=366.00  Aligned_cols=257  Identities=23%  Similarity=0.305  Sum_probs=218.6

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.+.     ++..||+|++.....    ....+.+|++++++++||||++++++
T Consensus         3 ~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~   73 (269)
T 4hcu_A            3 GKWVIDPSELTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGV   73 (269)
T ss_dssp             --CBCCGGGEEEEEEEEECSSCEEEEEEET-----TTEEEEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccEEeChhhceeeheecCCCccEEEEEEec-----CCCeEEEEEeccccc----CHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            346678889999999999999999999875     567899999976432    34567889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.+.+..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        74 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  152 (269)
T 4hcu_A           74 CLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGM  152 (269)
T ss_dssp             ECSSSSEEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTG
T ss_pred             EecCCceEEEEEeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccc
Confidence            99999999999999999999998764 35699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +.........                                                                     .
T Consensus       153 ~~~~~~~~~~---------------------------------------------------------------------~  163 (269)
T 4hcu_A          153 TRFVLDDQYT---------------------------------------------------------------------S  163 (269)
T ss_dssp             GGGBCCHHHH---------------------------------------------------------------------S
T ss_pred             cccccccccc---------------------------------------------------------------------c
Confidence            8644321100                                                                     0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++ |..||...........+... ........++.++.+++.+
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~  242 (269)
T 4hcu_A          164 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-FRLYKPRLASTHVYQIMNH  242 (269)
T ss_dssp             TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT-CCCCCCTTSCHHHHHHHHH
T ss_pred             ccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcC-ccCCCCCcCCHHHHHHHHH
Confidence            112247889999999999999999999999999999999 99999988877776666544 3344445688999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||..||++||+    +.++++|
T Consensus       243 ~l~~~p~~Rps----~~~ll~~  260 (269)
T 4hcu_A          243 CWRERPEDRPA----FSRLLRQ  260 (269)
T ss_dssp             HTCSSGGGSCC----HHHHHHH
T ss_pred             HccCCcccCcC----HHHHHHH
Confidence            99999999999    9998876

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=3.9e-48  Score=379.81  Aligned_cols=261  Identities=30%  Similarity=0.483  Sum_probs=210.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-----hhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-----SRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ++|++.+.||+|+||.||+|.++    .+++.||||++.+....     .......+.+|+++|+.++||||+++++++.
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   85 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFER----KTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD   85 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             hceeEeeEEecCCCEEEEEEEEc----CCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc
Confidence            47999999999999999999986    47899999999765432     1122345778999999999999999999997


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC---EEEeccC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLTDFD  233 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~---vkl~DFG  233 (457)
                      .+. .|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.   +||+|||
T Consensus        86 ~~~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg  162 (322)
T 2ycf_A           86 AED-YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFG  162 (322)
T ss_dssp             SSS-EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred             CCc-eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence            665 89999999999999887654  67999999999999999999999999999999999999987664   9999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++........                                                                      
T Consensus       163 ~~~~~~~~~~----------------------------------------------------------------------  172 (322)
T 2ycf_A          163 HSKILGETSL----------------------------------------------------------------------  172 (322)
T ss_dssp             TCEECCCCHH----------------------------------------------------------------------
T ss_pred             cceecccccc----------------------------------------------------------------------
Confidence            9865432110                                                                      


Q ss_pred             ccccccCCCCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCCCC--CCCCChHH
Q 012762          314 RSMSFVGTHEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFPK--EPSVPGPA  387 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~  387 (457)
                       .....||+.|+|||++.   +..++.++|||||||++|+|++|..||....... ....+......+..  ...++.++
T Consensus       173 -~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (322)
T 2ycf_A          173 -MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKA  251 (322)
T ss_dssp             -HHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHH
T ss_pred             -cccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHH
Confidence             11246999999999974   4568999999999999999999999998755432 33333333333221  24578999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .+||.+||..||++||+    +.++++||||+..+|.
T Consensus       252 ~~li~~~l~~dP~~Rps----~~~~l~h~~~~~~~~~  284 (322)
T 2ycf_A          252 LDLVKKLLVVDPKARFT----TEEALRHPWLQDEDMK  284 (322)
T ss_dssp             HHHHHHHSCSSTTTSCC----HHHHHTSGGGCCHHHH
T ss_pred             HHHHHHHcccCHhhCCC----HHHHhhCcCcCCHHHH
Confidence            99999999999999999    9999999999987763

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.5e-47  Score=379.57  Aligned_cols=266  Identities=23%  Similarity=0.314  Sum_probs=217.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC------Cc
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF------LP  149 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n------Iv  149 (457)
                      .+..-.++|++.+.||+|+||+||+|.++.   ..++.||+|++....    .....+.+|+++++.++|++      |+
T Consensus        13 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~~~   85 (355)
T 2eu9_A           13 IGDWLQERYEIVGNLGEGTFGKVVECLDHA---RGKSQVALKIIRNVG----KYREAARLEINVLKKIKEKDKENKFLCV   85 (355)
T ss_dssp             TTCEETTTEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHHCTTSCSCBC
T ss_pred             cCceecccEEEEEEeeccCCeEEEEEEecC---CCceEEEEEEEcccc----cchhHHHHHHHHHHHHhhcCCCCceeEE
Confidence            344556899999999999999999999763   234789999997532    34456778999999987655      89


Q ss_pred             eEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE--------
Q 012762          150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV--------  221 (457)
Q Consensus       150 ~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll--------  221 (457)
                      .+++++...+..||||||+ +++|..++.......+++..++.++.||+.||.|||++||+||||||+|||+        
T Consensus        86 ~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~  164 (355)
T 2eu9_A           86 LMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETL  164 (355)
T ss_dssp             CEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEE
T ss_pred             EeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccc
Confidence            9999999999999999999 7777777776655679999999999999999999999999999999999999        


Q ss_pred             -----------ccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCc
Q 012762          222 -----------RSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP  290 (457)
Q Consensus       222 -----------~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                                 +.++.+||+|||+++.....                                                 
T Consensus       165 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-------------------------------------------------  195 (355)
T 2eu9_A          165 YNEHKSCEEKSVKNTSIRVADFGSATFDHEH-------------------------------------------------  195 (355)
T ss_dssp             ECCC-CCCEEEESCCCEEECCCTTCEETTSC-------------------------------------------------
T ss_pred             ccccccccccccCCCcEEEeecCcccccccc-------------------------------------------------
Confidence                       56789999999997543211                                                 


Q ss_pred             chhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH
Q 012762          291 KRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV  370 (457)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~  370 (457)
                                              ....+||+.|+|||++.+..++.++|||||||++|||++|..||.+.........+
T Consensus       196 ------------------------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  251 (355)
T 2eu9_A          196 ------------------------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMM  251 (355)
T ss_dssp             ------------------------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             ------------------------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                                    01236999999999999999999999999999999999999999987766555444


Q ss_pred             HhcccCCCC------------------------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcC
Q 012762          371 VARALEFPK------------------------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMG  408 (457)
Q Consensus       371 ~~~~~~~~~------------------------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~  408 (457)
                      .......|.                                          ....+.++.+||.+||..||++||+    
T Consensus       252 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt----  327 (355)
T 2eu9_A          252 EKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT----  327 (355)
T ss_dssp             HHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC----
T ss_pred             HHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC----
Confidence            332222111                                          0111347889999999999999999    


Q ss_pred             hHHHhcCCCCCCCCchhh
Q 012762          409 ATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       409 ~~~ll~hp~f~~~~~~~~  426 (457)
                      +.|+++||||++++|...
T Consensus       328 ~~e~l~hp~f~~~~~~~~  345 (355)
T 2eu9_A          328 LAEALLHPFFAGLTPEER  345 (355)
T ss_dssp             HHHHTTSGGGGGCCHHHH
T ss_pred             HHHHhcChhhcCCChhhc
Confidence            999999999999988643

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-47  Score=372.80  Aligned_cols=261  Identities=25%  Similarity=0.405  Sum_probs=215.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.++    .+|+.||+|++....     ....+.+|+++++.++||||+++++++...+
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   97 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHK----ETGQIVAIKQVPVES-----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNT   97 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEET----TTCCEEEEEEEETTS-----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETT
T ss_pred             chhhhhhheeeccCCCeEEEEEEEC----CCCCEEEEEecCchH-----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCC
Confidence            4568999999999999999999876    478899999997542     3456778999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++... ...+++..++.++.||+.||.|||+.||+|+||||+||+++.++.+||+|||++....
T Consensus        98 ~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  176 (314)
T 3com_A           98 DLWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLT  176 (314)
T ss_dssp             EEEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECB
T ss_pred             EEEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhh
Confidence            999999999999999988743 3679999999999999999999999999999999999999999999999999975443


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      ......
T Consensus       177 ~~~~----------------------------------------------------------------------~~~~~~  186 (314)
T 3com_A          177 DTMA----------------------------------------------------------------------KRNTVI  186 (314)
T ss_dssp             TTBS----------------------------------------------------------------------CBCCCC
T ss_pred             hhcc----------------------------------------------------------------------ccCccC
Confidence            1110                                                                      011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc-CCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL-EFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||...........+..... .+.....++..+.+||.+||..|
T Consensus       187 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  266 (314)
T 3com_A          187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKS  266 (314)
T ss_dssp             SCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSC
T ss_pred             CCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCC
Confidence            89999999999999999999999999999999999999988766555444433321 22223457889999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          399 PTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      |.+||+    +.++++||||+...+.
T Consensus       267 p~~Rpt----~~~ll~~~~~~~~~~~  288 (314)
T 3com_A          267 PEQRAT----ATQLLQHPFVRSAKGV  288 (314)
T ss_dssp             TTTSCC----HHHHTTSHHHHTCCCG
T ss_pred             hhhCcC----HHHHHhCHHHhcCCcc
Confidence            999999    9999999999987664

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.3e-47  Score=364.53  Aligned_cols=253  Identities=28%  Similarity=0.440  Sum_probs=209.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+..++|++.+.||+|+||+||+|.+      .+..||+|++....... ......+.+|+++++.++||||+++++++.
T Consensus         3 ~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~   76 (271)
T 3dtc_A            3 EIDFAELTLEEIIGIGGFGKVYRAFW------IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL   76 (271)
T ss_dssp             BCCTTSEEEEEEEEEETTEEEEEEEE------TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccchhheeeeeeeccCCCeEEEEEEE------cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            35678999999999999999999986      47789999987643322 223467888999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC---ceeecCCCCCeEEcc--------CC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG---IIYRDLKPENVLVRS--------DG  225 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~---iiHrDIKp~NIll~~--------~~  225 (457)
                      .++..|+||||+++++|..++..   ..+++..++.++.||+.||.|||++|   |+||||||+|||++.        ++
T Consensus        77 ~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~  153 (271)
T 3dtc_A           77 KEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNK  153 (271)
T ss_dssp             CC--CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSC
T ss_pred             cCCceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCc
Confidence            99999999999999999988854   57999999999999999999999999   999999999999986        67


Q ss_pred             CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCc
Q 012762          226 HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE  305 (457)
Q Consensus       226 ~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (457)
                      .+||+|||++........                                                              
T Consensus       154 ~~kl~Dfg~~~~~~~~~~--------------------------------------------------------------  171 (271)
T 3dtc_A          154 ILKITDFGLAREWHRTTK--------------------------------------------------------------  171 (271)
T ss_dssp             CEEECCCCC-----------------------------------------------------------------------
T ss_pred             ceEEccCCcccccccccc--------------------------------------------------------------
Confidence            899999999864431110                                                              


Q ss_pred             ccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                                ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.........+.......+....+++
T Consensus       172 ----------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (271)
T 3dtc_A          172 ----------MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPE  241 (271)
T ss_dssp             --------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCH
T ss_pred             ----------cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCcccCH
Confidence                      1235899999999999999999999999999999999999999998887777777777766676677999


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+.++|.+||..||.+||+    +.|+++|
T Consensus       242 ~~~~li~~~l~~~p~~Rps----~~e~l~~  267 (271)
T 3dtc_A          242 PFAKLMEDCWNPDPHSRPS----FTNILDQ  267 (271)
T ss_dssp             HHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHhcCCcccCcC----HHHHHHH
Confidence            9999999999999999999    9998875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.6e-47  Score=379.82  Aligned_cols=266  Identities=20%  Similarity=0.274  Sum_probs=222.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..+.+..++|++.++||+|+||+||+|++...+.   ..+..||+|++...  ........+.+|+++++++ +||||++
T Consensus        62 ~~~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~~hpnIv~  139 (382)
T 3tt0_A           62 PRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD--ATEKDLSDLISEMEMMKMIGKHKNIIN  139 (382)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT--CCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             cccccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc--cCHHHHHHHHHHHHHHHHhcCCchhhh
Confidence            4456777899999999999999999999764322   34568999999764  2334456788899999999 9999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++..++..|+||||+++++|.+++....              ...+++..++.++.||+.||.|||++||+||||||
T Consensus       140 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp  219 (382)
T 3tt0_A          140 LLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAA  219 (382)
T ss_dssp             EEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCG
T ss_pred             heeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCc
Confidence            9999999999999999999999999998753              24599999999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +||||+.++.+||+|||+++.........                                                   
T Consensus       220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~---------------------------------------------------  248 (382)
T 3tt0_A          220 RNVLVTEDNVMKIADFGLARDIHHIDYYK---------------------------------------------------  248 (382)
T ss_dssp             GGEEECTTCCEEECSCSCCCCSSCCCTTC---------------------------------------------------
T ss_pred             ceEEEcCCCcEEEcccCcccccccccccc---------------------------------------------------
Confidence            99999999999999999986543211100                                                   


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                       ......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+....+....+.. ..
T Consensus       249 -----------------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~-~~  310 (382)
T 3tt0_A          249 -----------------KTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKE-GH  310 (382)
T ss_dssp             -----------------CCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHT-TC
T ss_pred             -----------------cccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc-CC
Confidence                             0012247889999999999999999999999999999999 9999998877666555443 33


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .......++.++.+||.+||+.||++||+    +.||+++
T Consensus       311 ~~~~~~~~~~~l~~li~~~l~~dP~~Rps----~~ell~~  346 (382)
T 3tt0_A          311 RMDKPSNCTNELYMMMRDCWHAVPSQRPT----FKQLVED  346 (382)
T ss_dssp             CCCCCSSCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            44445568999999999999999999999    8888875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=3.4e-47  Score=369.62  Aligned_cols=255  Identities=24%  Similarity=0.376  Sum_probs=219.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.|++++.||+|+||+||+|.+.    .+++.||+|++.....  ......+.+|+++++.++||||+++++++...+..
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   95 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDN----RTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKL   95 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEETTTC--STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEEC----CCCcEEEEEEeccccc--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeE
Confidence            56999999999999999999876    4788999999976532  23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |+||||+++++|.+++..   ..+++..++.++.||+.||.|||+.||+|+||||+|||++.++.+||+|||++......
T Consensus        96 ~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  172 (303)
T 3a7i_A           96 WIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  172 (303)
T ss_dssp             EEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred             EEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence            999999999999998865   57999999999999999999999999999999999999999999999999998554321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      ......||
T Consensus       173 ~~----------------------------------------------------------------------~~~~~~~~  182 (303)
T 3a7i_A          173 QI----------------------------------------------------------------------KRNTFVGT  182 (303)
T ss_dssp             BC----------------------------------------------------------------------CBCCCCSC
T ss_pred             cc----------------------------------------------------------------------ccCccCCC
Confidence            10                                                                      01134699


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTR  401 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~  401 (457)
                      +.|+|||++.+..++.++|||||||++|+|++|..||...........+.... .......++..+.+||.+||..||++
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~  261 (303)
T 3a7i_A          183 PFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNN-PPTLEGNYSKPLKEFVEACLNKEPSF  261 (303)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC-CCCCCSSCCHHHHHHHHHHCCSSGGG
T ss_pred             cCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCC-CCCCccccCHHHHHHHHHHcCCChhh
Confidence            99999999999999999999999999999999999998877666555544332 22233468899999999999999999


Q ss_pred             CCCCCcChHHHhcCCCCCC
Q 012762          402 RMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       402 Rps~~~~~~~ll~hp~f~~  420 (457)
                      ||+    +.+|++||||..
T Consensus       262 Rps----~~~ll~~~~~~~  276 (303)
T 3a7i_A          262 RPT----AKELLKHKFILR  276 (303)
T ss_dssp             SCC----HHHHTTCHHHHH
T ss_pred             CcC----HHHHhhChhhhc
Confidence            999    999999999964

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.5e-47  Score=376.03  Aligned_cols=259  Identities=27%  Similarity=0.355  Sum_probs=213.2

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|.+.+.||+|+||+||+|.++    .+|+.||||++.... ........+.+|+.+|+.++||||+++++++...+.
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   97 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDK----RSGEKVAIKKLSRPF-QSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASS   97 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEESSTT-SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             CceEEEeeeEecCCCeEEEEEEEC----CCCCEEEEEEecccc-cchHHHHHHHHHHHHHHhcCCCCcccHhheEecccc
Confidence            368999999999999999999986    478999999997542 233445677889999999999999999999987654


Q ss_pred             ------EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          161 ------SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       161 ------~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                            .|+||||+. ++|..++.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        98 ~~~~~~~~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A           98 LRNFYDFYLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             GGGCCCCEEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             cccceeEEEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeeccc
Confidence                  499999995 68876653    3599999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +......                                                                         
T Consensus       173 ~~~~~~~-------------------------------------------------------------------------  179 (353)
T 3coi_A          173 ARHADAE-------------------------------------------------------------------------  179 (353)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             ccCCCCC-------------------------------------------------------------------------
Confidence            7543211                                                                         


Q ss_pred             cccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-----------------
Q 012762          315 SMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-----------------  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-----------------  376 (457)
                      .....||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+......+..++.....                 
T Consensus       180 ~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
T 3coi_A          180 MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSY  259 (353)
T ss_dssp             ----CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHH
T ss_pred             ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHH
Confidence            012358999999999987 56899999999999999999999999987766655554432110                 


Q ss_pred             -----------C-CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          377 -----------F-PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       377 -----------~-~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                                 + .....++.++.+||.+||..||++||+    +.++++||||+.+.....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt----~~e~l~hp~f~~~~~~~~  317 (353)
T 3coi_A          260 IQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLT----AAQALTHPFFEPFRDPEE  317 (353)
T ss_dssp             HHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCC----HHHHHTSGGGTTTCCGGG
T ss_pred             HHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCC----HHHHhcCcchhhccCccc
Confidence                       0 112356889999999999999999999    999999999998766543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=4.5e-47  Score=373.69  Aligned_cols=266  Identities=20%  Similarity=0.335  Sum_probs=213.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~  158 (457)
                      ..++|++.+.||+|+||+||+|.+.    .+++.||||++....     ....+.+|+++++.+ +|+||+++++++..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   77 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNL----YTNEYVAIKLEPMKS-----RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCG   77 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEET----TTTEEEEEEEEETTC-----SSCCHHHHHHHHHHHCSCTTSCCEEEEEEET
T ss_pred             EcCCeEEEEEeeccCCceEEEEEEC----CCCcEEEEEEecccc-----chHHHHHHHHHHHHhhCCCCCCEEEEEEecC
Confidence            3468999999999999999999976    478999999987542     223577899999999 999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC-----EEEeccC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-----IMLTDFD  233 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~-----vkl~DFG  233 (457)
                      +..||||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.     +||+|||
T Consensus        78 ~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg  155 (330)
T 2izr_A           78 KYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA  155 (330)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCT
T ss_pred             CccEEEEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcc
Confidence            9999999999 99999998875 367999999999999999999999999999999999999998887     9999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++...........                                                               ...
T Consensus       156 ~a~~~~~~~~~~~~---------------------------------------------------------------~~~  172 (330)
T 2izr_A          156 LAKEYIDPETKKHI---------------------------------------------------------------PYR  172 (330)
T ss_dssp             TCEESBCTTTCCBC---------------------------------------------------------------CCC
T ss_pred             cceeeecCCCCccc---------------------------------------------------------------ccc
Confidence            98755322111000                                                               000


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh---HHHHHHHHhcccCCCC---CCCCChHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTLANVVARALEFPK---EPSVPGPA  387 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~  387 (457)
                      .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+...   ...+..+.......+.   ...+| ++
T Consensus       173 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~  251 (330)
T 2izr_A          173 EHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EM  251 (330)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HH
T ss_pred             ccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HH
Confidence            11245799999999999999999999999999999999999999987533   3334444333333321   12345 89


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhc----------CCCCCCCCch
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKR----------HQFFNGVNWA  424 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~----------hp~f~~~~~~  424 (457)
                      .++|..||..||.+||+    +++|++          ..+...++|.
T Consensus       252 ~~li~~~l~~~p~~RP~----~~~l~~~l~~~~~~~~~~~~~~~dw~  294 (330)
T 2izr_A          252 ATYLRYVRRLDFFEKPD----YDYLRKLFTDLFDRKGYMFDYEYDWI  294 (330)
T ss_dssp             HHHHHHHHHCCTTCCCC----HHHHHHHHHHHHHHTTCCCSCCCTTT
T ss_pred             HHHHHHHHhCCCCCCCC----HHHHHHHHHHHHHHcCCCCCCCccCC
Confidence            99999999999999999    666654          4455568887

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.8e-49  Score=398.24  Aligned_cols=251  Identities=17%  Similarity=0.181  Sum_probs=202.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHH---HHHcCCCCCceEE----
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI---LEMLDHPFLPTLY----  152 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~i---l~~l~H~nIv~l~----  152 (457)
                      ..++|++.+.||+|+||+||+|+++    .+|+.||||++.+...........+.+|+++   |+.++|||||+++    
T Consensus        71 ~~~~y~~~~~lG~G~~g~V~~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~  146 (377)
T 3byv_A           71 RPRTLVRGTVLGQEDPYAYLEATDQ----ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI  146 (377)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEC-----CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBC
T ss_pred             CCceEEEcceeecCCCEEEEEEEEC----CCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhh
Confidence            3578999999999999999999976    4788999999986544455566788889955   4555899999998    


Q ss_pred             ---EEEEcCCc-----------------EEEEEeecCCCChHHHHHhCCCCCCC-------HHHHHHHHHHHHHHHHHHH
Q 012762          153 ---ATLDCPRW-----------------SCLLTEFCPGGDLHVLRQRQPDKRFH-------ESAVRFYASEVVVALEFLH  205 (457)
Q Consensus       153 ---~~~~~~~~-----------------~~lV~E~~~~~sL~~~~~~~~~~~~~-------~~~~~~i~~qi~~~L~yLH  205 (457)
                         +++...+.                 .||||||+ +|+|.+++...  +.++       +..++.++.||+.||.|||
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~--~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  223 (377)
T 3byv_A          147 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL--LSHSSTHKSLVHHARLQLTLQVIRLLASLH  223 (377)
T ss_dssp             CCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH--HHTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc--cccccccccccHHHHHHHHHHHHHHHHHHH
Confidence               77665542                 79999999 78999998764  2244       4788889999999999999


Q ss_pred             HcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcc
Q 012762          206 MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAV  285 (457)
Q Consensus       206 ~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (457)
                      ++||+||||||+||||+.++.+||+|||+++....                                             
T Consensus       224 ~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~---------------------------------------------  258 (377)
T 3byv_A          224 HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA---------------------------------------------  258 (377)
T ss_dssp             HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTC---------------------------------------------
T ss_pred             hCCeecCCCCHHHEEEcCCCCEEEEechhheecCC---------------------------------------------
Confidence            99999999999999999999999999999864321                                             


Q ss_pred             cccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCC-----------CCCccchhhhhhHHHHHHhcC
Q 012762          286 SCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-----------GHGNAVDWWTLGIFIFELFYG  354 (457)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-----------~~~~~sDiwSlG~il~elltG  354 (457)
                                                  .....+| +.|+|||++.+.           .++.++|||||||++|||++|
T Consensus       259 ----------------------------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg  309 (377)
T 3byv_A          259 ----------------------------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCA  309 (377)
T ss_dssp             ----------------------------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------------------------cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHC
Confidence                                        1113458 999999999987           799999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          355 TTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       355 ~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      +.||.+.........+.      .....+++++.+||.+||..||++||+    +.|+++||||+.+
T Consensus       310 ~~Pf~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~L~~dp~~Rpt----~~e~l~hp~f~~~  366 (377)
T 3byv_A          310 DLPITKDAALGGSEWIF------RSCKNIPQPVRALLEGFLRYPKEDRLL----PLQAMETPEYEQL  366 (377)
T ss_dssp             SCCC------CCSGGGG------SSCCCCCHHHHHHHHHHTCSSGGGCCC----HHHHHTSHHHHHH
T ss_pred             CCCCcccccccchhhhh------hhccCCCHHHHHHHHHHcCCCchhCCC----HHHHhhChHHHHH
Confidence            99998755433322221      122468899999999999999999999    9999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.6e-47  Score=372.50  Aligned_cols=256  Identities=23%  Similarity=0.383  Sum_probs=208.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|+++    .+++.||||++.....  ......+.+|+++|++++||||+++++++....
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   80 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHK----KTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT   80 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEEC----CCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCcceEEEEeecCC
Confidence            3468999999999999999999987    3788999999976533  233566778999999999999999999998765


Q ss_pred             --cEEEEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE----ccCCCEEEecc
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV----RSDGHIMLTDF  232 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll----~~~~~vkl~DF  232 (457)
                        ..||||||+++++|.+++.... ...+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Df  160 (319)
T 4euu_A           81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF  160 (319)
T ss_dssp             TCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCC
T ss_pred             CceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccC
Confidence              7899999999999999987643 2349999999999999999999999999999999999999    77778999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++.......                                                                     
T Consensus       161 g~a~~~~~~~~---------------------------------------------------------------------  171 (319)
T 4euu_A          161 GAARELEDDEQ---------------------------------------------------------------------  171 (319)
T ss_dssp             TTCEECCTTCC---------------------------------------------------------------------
T ss_pred             CCceecCCCCc---------------------------------------------------------------------
Confidence            99865432111                                                                     


Q ss_pred             cccccccCCCCccCchhhc--------CCCCCccchhhhhhHHHHHHhcCCCCCCCCCh----HHHHHHHHhccc-----
Q 012762          313 VRSMSFVGTHEYLAPEIIS--------GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH----ELTLANVVARAL-----  375 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~--------~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~----~~~~~~~~~~~~-----  375 (457)
                        .....||+.|+|||++.        +..++.++|||||||++|||++|+.||.....    ...+..++....     
T Consensus       172 --~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~  249 (319)
T 4euu_A          172 --FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAIS  249 (319)
T ss_dssp             --BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCE
T ss_pred             --eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccch
Confidence              11246999999999986        46789999999999999999999999975432    334444444322     


Q ss_pred             --------------CCCCCCC----CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCC
Q 012762          376 --------------EFPKEPS----VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQ  416 (457)
Q Consensus       376 --------------~~~~~~~----~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp  416 (457)
                                    .++....    ++..+.+||.+||+.||++||+    ++|+|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s----~~ell~h~  304 (319)
T 4euu_A          250 GVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWG----FDQFFAET  304 (319)
T ss_dssp             EEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCC----HHHHHHHH
T ss_pred             hhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhcc----HHHhhhcc
Confidence                          1111111    2346889999999999999999    99999986

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=388.54  Aligned_cols=264  Identities=21%  Similarity=0.290  Sum_probs=195.0

Q ss_pred             Ccee-EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE--cCC
Q 012762           83 DLRF-VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD--CPR  159 (457)
Q Consensus        83 ~~~~-~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~--~~~  159 (457)
                      .|.+ .++||+|+||+||+|+++.  ..+++.||||++....     ....+.+|+++|+.++||||+++++++.  ...
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~--~~~~~~vaiK~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   93 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKD--GKDDKDYALKQIEGTG-----ISMSACREIALLRELKHPNVISLQKVFLSHADR   93 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESS--SSCCCCEEEEECSSSS-----CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTT
T ss_pred             hhhhcCcEeeecCCeEEEEEEEcc--CCCCeEEEEEEECCCC-----CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCC
Confidence            4666 4589999999999998753  2367899999996542     2235678999999999999999999995  467


Q ss_pred             cEEEEEeecCCCChHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE----ccCCCEE
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQ-------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV----RSDGHIM  228 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~-------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll----~~~~~vk  228 (457)
                      .+||||||+. ++|..++...       ....+++..++.++.||+.||.|||++||+||||||+||||    +.++.+|
T Consensus        94 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~k  172 (405)
T 3rgf_A           94 KVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVK  172 (405)
T ss_dssp             EEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred             eEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEE
Confidence            8999999994 6787766532       12359999999999999999999999999999999999999    6778999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+++........                                                                
T Consensus       173 l~Dfg~a~~~~~~~~~----------------------------------------------------------------  188 (405)
T 3rgf_A          173 IADMGFARLFNSPLKP----------------------------------------------------------------  188 (405)
T ss_dssp             ECCTTCCC------------------------------------------------------------------------
T ss_pred             EEECCCceecCCCCcc----------------------------------------------------------------
Confidence            9999998655321100                                                                


Q ss_pred             cCCccccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChH---------HHHHHHHhcccCCC
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------LTLANVVARALEFP  378 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------~~~~~~~~~~~~~~  378 (457)
                         .......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+....         ..+..++......+
T Consensus       189 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~  265 (405)
T 3rgf_A          189 ---LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPA  265 (405)
T ss_dssp             -----------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCC
T ss_pred             ---cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCC
Confidence               00112347999999999998854 899999999999999999999999765432         33333332211111


Q ss_pred             C------------------------------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          379 K------------------------------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       379 ~------------------------------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .                                    ....+..+.+||.+||..||.+|||    ++|+|+||||+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~t----a~e~L~hp~f~~~~  341 (405)
T 3rgf_A          266 DKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRIT----SEQAMQDPYFLEDP  341 (405)
T ss_dssp             TTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTSSS
T ss_pred             hhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCC----HHHHhcChhhccCC
Confidence            0                                    0112677899999999999999999    99999999999877


Q ss_pred             chh
Q 012762          423 WAL  425 (457)
Q Consensus       423 ~~~  425 (457)
                      |..
T Consensus       342 ~~~  344 (405)
T 3rgf_A          342 LPT  344 (405)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            654

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.3e-47  Score=369.74  Aligned_cols=259  Identities=29%  Similarity=0.445  Sum_probs=221.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|++++.||+|+||+||+|+++    .+++.||+|++...... ......+.+|++++++++||||+++++++...+..
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~----~~~~~valK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   96 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDR----ITQQEYAVKVINKASAK-NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSF   96 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGBS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEc----CCCcEEEEEEecccccc-hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeE
Confidence            47999999999999999999986    37889999999765432 23456788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEEEeccCCCcCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIMLTDFDLSLKG  238 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vkl~DFG~s~~~  238 (457)
                      |+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++...
T Consensus        97 ~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~  174 (287)
T 2wei_A           97 YIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (287)
T ss_dssp             EEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred             EEEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence            9999999999998877664  569999999999999999999999999999999999999754   47999999997543


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ....
T Consensus       175 ~~~~~-----------------------------------------------------------------------~~~~  183 (287)
T 2wei_A          175 QQNTK-----------------------------------------------------------------------MKDR  183 (287)
T ss_dssp             CCCSS-----------------------------------------------------------------------CSCH
T ss_pred             cCCCc-----------------------------------------------------------------------cccc
Confidence            21110                                                                       0123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||++.+. ++.++|||||||++|+|++|..||.+.........+......++  ....++.++.++|.+||.
T Consensus       184 ~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  262 (287)
T 2wei_A          184 IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLT  262 (287)
T ss_dssp             HHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTC
T ss_pred             cCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcc
Confidence            589999999999865 89999999999999999999999999888777777777665443  235688999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      .||++||+    +.++++||||+..+|
T Consensus       263 ~dp~~Rps----~~ell~hp~~~~~~~  285 (287)
T 2wei_A          263 FHPSLRIT----ATQCLEHPWIQKYSS  285 (287)
T ss_dssp             SSGGGSCC----HHHHHHSHHHHHHCC
T ss_pred             cChhhCcC----HHHHhcCHHHhcccc
Confidence            99999999    999999999986554

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=4.8e-47  Score=381.26  Aligned_cols=261  Identities=24%  Similarity=0.339  Sum_probs=213.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CC-----CCce
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HP-----FLPT  150 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~-----nIv~  150 (457)
                      ...-.++|++.+.||+|+||+||+|.++    .+++.||||++....    .....+..|+++++.+. |+     +|++
T Consensus        49 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~  120 (382)
T 2vx3_A           49 GEKWMDRYEIDSLIGKGSFGQVVKAYDR----VEQEWVAIKIIKNKK----AFLNQAQIEVRLLELMNKHDTEMKYYIVH  120 (382)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHCSSGGGGGBCC
T ss_pred             CCEeeeeEEEEEEEeecCCEEEEEEEEc----CCCcEEEEEEEeccH----HHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence            3444679999999999999999999986    478899999997532    23456677899988885 55     4999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH--HcCceeecCCCCCeEEc--cCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH--MMGIIYRDLKPENVLVR--SDGH  226 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--~~~iiHrDIKp~NIll~--~~~~  226 (457)
                      +++++...+..||||||+ +++|.+++.......+++..++.++.||+.||.|||  +.|||||||||+||||+  .++.
T Consensus       121 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          121 LKRHFMFRNHLCLVFEML-SYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             EEEEEEETTEEEEEEECC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCC
T ss_pred             eeeeeccCCceEEEEecC-CCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCc
Confidence            999999999999999999 569999998876677999999999999999999999  57999999999999995  4678


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      +||+|||+++.....                                                                 
T Consensus       200 ~kL~DFG~a~~~~~~-----------------------------------------------------------------  214 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQR-----------------------------------------------------------------  214 (382)
T ss_dssp             EEECCCTTCEETTCC-----------------------------------------------------------------
T ss_pred             EEEEeccCceecccc-----------------------------------------------------------------
Confidence            999999998644211                                                                 


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-------
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-------  379 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-------  379 (457)
                              ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+....+.+..++......+.       
T Consensus       215 --------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  286 (382)
T 2vx3_A          215 --------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAP  286 (382)
T ss_dssp             --------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCT
T ss_pred             --------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhH
Confidence                    11246999999999999999999999999999999999999999998877776666543211110       


Q ss_pred             ------------------------------CCC-------------------------CChHHHHHHHHHhhhCCCCCCC
Q 012762          380 ------------------------------EPS-------------------------VPGPAKDLIAQLLVKDPTRRMG  404 (457)
Q Consensus       380 ------------------------------~~~-------------------------~~~~~~~ll~~~L~~dP~~Rps  404 (457)
                                                    ...                         ...++++||.+||+.||++|||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpt  366 (382)
T 2vx3_A          287 KARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQ  366 (382)
T ss_dssp             THHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCC
T ss_pred             HHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCC
Confidence                                          000                         0026899999999999999999


Q ss_pred             CCcChHHHhcCCCCCCCCc
Q 012762          405 SKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       405 ~~~~~~~ll~hp~f~~~~~  423 (457)
                          +.|+|+||||+...|
T Consensus       367 ----a~e~L~hp~f~~~~~  381 (382)
T 2vx3_A          367 ----PYYALQHSFFKKTAD  381 (382)
T ss_dssp             ----HHHHTTSGGGCC---
T ss_pred             ----HHHHhcCcccccCCC
Confidence                999999999987543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-47  Score=377.32  Aligned_cols=266  Identities=19%  Similarity=0.275  Sum_probs=221.8

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||+||+|.+... ...++..||+|++....  .......+.+|+++|+++ +||||+++++
T Consensus        39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  116 (344)
T 1rjb_A           39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLG  116 (344)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc--CHHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            4567778999999999999999999997432 22467789999997542  223446788899999999 8999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPD---------------------KRFHESAVRFYASEVVVALEFLHMMGIIYR  212 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~---------------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHr  212 (457)
                      ++...+..|+||||+++++|.+++.....                     ..+++..++.++.||+.||.|||++||+||
T Consensus       117 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~  196 (344)
T 1rjb_A          117 ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHR  196 (344)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEET
T ss_pred             EEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            99999999999999999999999876532                     247999999999999999999999999999


Q ss_pred             cCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcch
Q 012762          213 DLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR  292 (457)
Q Consensus       213 DIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      ||||+|||++.++.+||+|||++.........                                                
T Consensus       197 Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~------------------------------------------------  228 (344)
T 1rjb_A          197 DLAARNVLVTHGKVVKICDFGLARDIMSDSNY------------------------------------------------  228 (344)
T ss_dssp             TCSGGGEEEETTTEEEECCCGGGSCGGGCTTS------------------------------------------------
T ss_pred             CCChhhEEEcCCCcEEeCCCccCcccccCccc------------------------------------------------
Confidence            99999999999999999999998644211100                                                


Q ss_pred             hccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHH
Q 012762          293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVV  371 (457)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~  371 (457)
                                          .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.........++
T Consensus       229 --------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~  288 (344)
T 1rjb_A          229 --------------------VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLI  288 (344)
T ss_dssp             --------------------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHH
T ss_pred             --------------------eeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHH
Confidence                                00112357899999999999999999999999999999998 999999887666666777


Q ss_pred             hcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ......+....+++++.+||.+||..||.+||+    +.+|++|
T Consensus       289 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~~l~~~  328 (344)
T 1rjb_A          289 QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS----FPNLTSF  328 (344)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcC----HHHHHHH
Confidence            766666666678999999999999999999999    9999876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=5.1e-47  Score=369.58  Aligned_cols=266  Identities=21%  Similarity=0.309  Sum_probs=224.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||+||+|++... +..+++.||+|++....  .......+.+|+++|+++ +||||+++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~i~~~~~   94 (313)
T 1t46_A           17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLG   94 (313)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch--hHHHHHHHHHHHHHHhhcccCCCeeeEEE
Confidence            3556778999999999999999999986432 33578899999997543  223456788899999999 9999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCC----------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPD----------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~----------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      ++..++..|+||||+++++|.+++.....                ..+++..++.++.||+.||.|||++||+||||||+
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~  174 (313)
T 1t46_A           95 ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAAR  174 (313)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccc
Confidence            99999999999999999999999887532                24899999999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||++.++.+||+|||++..........                                                    
T Consensus       175 Nil~~~~~~~kl~Dfg~~~~~~~~~~~~----------------------------------------------------  202 (313)
T 1t46_A          175 NILLTHGRITKICDFGLARDIKNDSNYV----------------------------------------------------  202 (313)
T ss_dssp             GEEEETTTEEEECCCGGGSCTTSCTTSE----------------------------------------------------
T ss_pred             eEEEcCCCCEEEccccccccccccccce----------------------------------------------------
Confidence            9999999999999999986553221100                                                    


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccC
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALE  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  376 (457)
                                      ......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..........+.....
T Consensus       203 ----------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~  266 (313)
T 1t46_A          203 ----------------VKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR  266 (313)
T ss_dssp             ----------------ECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCC
T ss_pred             ----------------eccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCC
Confidence                            0012357889999999999999999999999999999998 99999987766666666666666


Q ss_pred             CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       377 ~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ......++.++.++|.+||..||.+||+    +.+++++
T Consensus       267 ~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~~  301 (313)
T 1t46_A          267 MLSPEHAPAEMYDIMKTCWDADPLKRPT----FKQIVQL  301 (313)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHcCCCchhCcC----HHHHHHH
Confidence            6666678999999999999999999999    8888764

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.1e-47  Score=366.37  Aligned_cols=261  Identities=22%  Similarity=0.357  Sum_probs=218.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE--c
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD--C  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~--~  157 (457)
                      ..++|++++.||+|+||+||+|.++    .+++.||+|++..... .......+.+|+++++.++||||+++++++.  .
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   78 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRK----SDGKILVWKELDYGSM-TEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRT   78 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGG
T ss_pred             chhheeeehhccCCCCcEEEEEEEC----CCCcEEEEEEEEcccC-CHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCC
Confidence            3468999999999999999999986    4788999999976543 2334567888999999999999999999874  4


Q ss_pred             CCcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcC-----ceeecCCCCCeEEccCCCEEEe
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLT  230 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~-----iiHrDIKp~NIll~~~~~vkl~  230 (457)
                      .+..|+||||+++++|.+++...  ....+++..++.++.||+.||.|||+.|     |+||||||+|||++.++.+||+
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~  158 (279)
T 2w5a_A           79 NTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLG  158 (279)
T ss_dssp             GTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEEC
T ss_pred             CceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEe
Confidence            67889999999999999988753  2345999999999999999999999999     9999999999999999999999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++........                                                                   
T Consensus       159 dfg~~~~~~~~~~-------------------------------------------------------------------  171 (279)
T 2w5a_A          159 DFGLARILNHDTS-------------------------------------------------------------------  171 (279)
T ss_dssp             CCCHHHHC---CH-------------------------------------------------------------------
T ss_pred             cCchheeeccccc-------------------------------------------------------------------
Confidence            9999765432110                                                                   


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDL  390 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (457)
                         ......||+.|+|||++.+..++.++|||||||++|+|++|..||...........+...... .....++.++.++
T Consensus       172 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~-~~~~~~~~~l~~l  247 (279)
T 2w5a_A          172 ---FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFR-RIPYRYSDELNEI  247 (279)
T ss_dssp             ---HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHHH
T ss_pred             ---cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccc-cCCcccCHHHHHH
Confidence               011236899999999999999999999999999999999999999988777666666655432 2234588999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |.+||..||++||+    +.||++|+|+..
T Consensus       248 i~~~l~~~p~~Rps----~~~ll~~~~~~~  273 (279)
T 2w5a_A          248 ITRMLNLKDYHRPS----VEEILENPLILE  273 (279)
T ss_dssp             HHHHTCSSGGGSCC----HHHHHTSTTCCG
T ss_pred             HHHHcCCCcccCCC----HHHHHhChhhhh
Confidence            99999999999999    999999999975

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.2e-47  Score=379.92  Aligned_cols=263  Identities=24%  Similarity=0.331  Sum_probs=200.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|++.+.||+|+||+||+|+++    .+++.||||++.....    .......|++.++.++||||+++++++...+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~----~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           22 MDRFQVERMAGQGTFGTVQLGKEK----STGMSVAIKKVIQDPR----FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             HTTEEEC----------CEEEEET----TTCCEEEEEEEECCTT----CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEecCcc----ccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            468999999999999999999986    4788999999865422    22345567888888999999999999965433


Q ss_pred             -------EEEEEeecCCCChHHHHHh--CCCCCCCHHHHHHHHHHHHHHHHHHH--HcCceeecCCCCCeEEcc-CCCEE
Q 012762          161 -------SCLLTEFCPGGDLHVLRQR--QPDKRFHESAVRFYASEVVVALEFLH--MMGIIYRDLKPENVLVRS-DGHIM  228 (457)
Q Consensus       161 -------~~lV~E~~~~~sL~~~~~~--~~~~~~~~~~~~~i~~qi~~~L~yLH--~~~iiHrDIKp~NIll~~-~~~vk  228 (457)
                             +|+||||+++ +|...+..  .....+++..++.++.||+.||.|||  ++||+||||||+|||++. ++.+|
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~k  172 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLK  172 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred             ccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEE
Confidence                   7899999965 55433332  23467899999999999999999999  999999999999999996 89999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||+++.......                                                                 
T Consensus       173 l~Dfg~a~~~~~~~~-----------------------------------------------------------------  187 (360)
T 3e3p_A          173 LCDFGSAKKLSPSEP-----------------------------------------------------------------  187 (360)
T ss_dssp             ECCCTTCBCCCTTSC-----------------------------------------------------------------
T ss_pred             EeeCCCceecCCCCC-----------------------------------------------------------------
Confidence            999999865532111                                                                 


Q ss_pred             cCCccccccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------  378 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------  378 (457)
                            .....||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+......+..++......+         
T Consensus       188 ------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T 3e3p_A          188 ------NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNP  261 (360)
T ss_dssp             ------CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCT
T ss_pred             ------cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhccc
Confidence                  11236899999999997665 89999999999999999999999999887777666654221110         


Q ss_pred             ---------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhh
Q 012762          379 ---------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLR  427 (457)
Q Consensus       379 ---------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~  427 (457)
                                           .....+.++.+||.+||+.||.+||+    +.|+|+||||+.+.+....
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~e~l~hp~f~~~~~~~~~  327 (360)
T 3e3p_A          262 SHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMK----PYEALCHPYFDELHDPATK  327 (360)
T ss_dssp             TCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCC----HHHHTTSGGGGGGGCTTCC
T ss_pred             chhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCC----HHHHhcCccccccCCcccc
Confidence                                 01124578999999999999999999    9999999999987665433

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=2e-47  Score=373.14  Aligned_cols=264  Identities=21%  Similarity=0.304  Sum_probs=209.5

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE---
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD---  156 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~---  156 (457)
                      -.++|++++.||+|+||+||+|.++    .+++.||+|++....   ......+.+|+++++.++||||+++++++.   
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   81 (320)
T 2i6l_A            9 LGSRYMDLKPLGCGGNGLVFSAVDN----DCDKRVAIKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVFEILGPSG   81 (320)
T ss_dssp             ETTTEEEEEECC-----CEEEEEET----TTTEEEEEEEEECCS---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTS
T ss_pred             cCCceeEEEEeccCCCeEEEEEEEC----CCCeEEEEEEEecCC---hHHHHHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence            3468999999999999999999986    478999999987542   344567788999999999999999999874   


Q ss_pred             -----------cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc-cC
Q 012762          157 -----------CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR-SD  224 (457)
Q Consensus       157 -----------~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~-~~  224 (457)
                                 .....|+||||++ ++|.+++..   +.+++..++.++.||+.||.|||++||+||||||+|||++ .+
T Consensus        82 ~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  157 (320)
T 2i6l_A           82 SQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTED  157 (320)
T ss_dssp             CBCCC----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT
T ss_pred             cccccccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC
Confidence                       3467899999996 699888864   5799999999999999999999999999999999999997 56


Q ss_pred             CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       225 ~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                      +.+||+|||+++........                                                            
T Consensus       158 ~~~kl~Dfg~~~~~~~~~~~------------------------------------------------------------  177 (320)
T 2i6l_A          158 LVLKIGDFGLARIMDPHYSH------------------------------------------------------------  177 (320)
T ss_dssp             TEEEECCCTTCBCC------------------------------------------------------------------
T ss_pred             CeEEEccCccccccCCCccc------------------------------------------------------------
Confidence            79999999998654321100                                                            


Q ss_pred             cccccCCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-------
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-------  376 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-------  376 (457)
                             ........||..|+|||++.+ ..++.++|||||||++|||++|+.||.+.........++.....       
T Consensus       178 -------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  250 (320)
T 2i6l_A          178 -------KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQ  250 (320)
T ss_dssp             ---------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHH
T ss_pred             -------ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhh
Confidence                   000112358999999999876 56899999999999999999999999988776665555433211       


Q ss_pred             ---------------CCC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          377 ---------------FPK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       377 ---------------~~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                                     .+.      ...++.++.+||.+||+.||++||+    +.|+++||||+..+|..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~~~~p~  316 (320)
T 2i6l_A          251 ELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLT----AEEALSHPYMSIYSFPM  316 (320)
T ss_dssp             HHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCC----HHHHHTSHHHHTTCC--
T ss_pred             hhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCC----HHHHhCCcccccccCcc
Confidence                           010      1357899999999999999999999    99999999999888753

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2e-47  Score=374.59  Aligned_cols=281  Identities=20%  Similarity=0.273  Sum_probs=206.2

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|++.+.||+|+||+||+|+++... .....||||++..... .......+.+|++++++++||||++++++
T Consensus        16 ~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~   93 (323)
T 3qup_A           16 EDVLIPEQQFTLGRMLGKGEFGSVREAQLKQED-GSFVKVAVKMLKADII-ASSDIEEFLREAACMKEFDHPHVAKLVGV   93 (323)
T ss_dssp             CTTBCC---CEEEEEEEEETTEEEEEEEC--------CEEEEEEC-------CHHHHHHHHHHHHHTTCCCTTBCCCCEE
T ss_pred             hhcccChhHeEEeceecccCCeEEEEEEEcccC-CcceeEEEEEeccccc-CHHHHHHHHHHHHHHHHCCCCceehhhce
Confidence            345567789999999999999999999876321 1224899999976533 23346778889999999999999999999


Q ss_pred             EEcCCcE------EEEEeecCCCChHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC
Q 012762          155 LDCPRWS------CLLTEFCPGGDLHVLRQRQP----DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       155 ~~~~~~~------~lV~E~~~~~sL~~~~~~~~----~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~  224 (457)
                      +...+..      |+||||+++++|..++....    ...+++..++.++.||+.||.|||++||+||||||+|||++.+
T Consensus        94 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~  173 (323)
T 3qup_A           94 SLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAED  173 (323)
T ss_dssp             EECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTT
T ss_pred             eeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCC
Confidence            9877655      99999999999998886532    1258999999999999999999999999999999999999999


Q ss_pred             CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       225 ~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                      +.+||+|||+++.........                                                           
T Consensus       174 ~~~kl~Dfg~a~~~~~~~~~~-----------------------------------------------------------  194 (323)
T 3qup_A          174 MTVCVADFGLSRKIYSGDYYR-----------------------------------------------------------  194 (323)
T ss_dssp             SCEEECCCCC----------------------------------------------------------------------
T ss_pred             CCEEEeecccccccccccccc-----------------------------------------------------------
Confidence            999999999986543211100                                                           


Q ss_pred             cccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCC
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSV  383 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  383 (457)
                               ......|++.|+|||++.+..++.++|||||||++|||++ |..||.+.........+.... ..+....+
T Consensus       195 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~  264 (323)
T 3qup_A          195 ---------QGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN-RLKQPPEC  264 (323)
T ss_dssp             ---------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-CCCCCTTC
T ss_pred             ---------ccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC-CCCCCCcc
Confidence                     0012247889999999999999999999999999999999 999999888777766665543 34445568


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCCc---ChHHHhcCCCCCCCCchhh
Q 012762          384 PGPAKDLIAQLLVKDPTRRMGSKM---GATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       384 ~~~~~~ll~~~L~~dP~~Rps~~~---~~~~ll~hp~f~~~~~~~~  426 (457)
                      +.++.+||.+||+.||++||++.+   .++++++|+|+....+.-+
T Consensus       265 ~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~pl  310 (323)
T 3qup_A          265 MEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQDPL  310 (323)
T ss_dssp             CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----------
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCCCC
Confidence            999999999999999999999543   3667789999987655443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=4.7e-47  Score=369.99  Aligned_cols=266  Identities=18%  Similarity=0.268  Sum_probs=221.7

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ..+.+..++|++.+.||+|+||.||+|.+.... ..++..||+|++....  .......+.+|+++|+.++||||+++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~   93 (314)
T 2ivs_A           16 PKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYG   93 (314)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             cccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEE
Confidence            456677889999999999999999999875322 3466899999997542  2344567888999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHcCcee
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPD----------------------KRFHESAVRFYASEVVVALEFLHMMGIIY  211 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~----------------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiH  211 (457)
                      ++...+..|+||||+++++|.+++.....                      ..+++..++.++.||+.||.|||++||+|
T Consensus        94 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH  173 (314)
T 2ivs_A           94 ACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVH  173 (314)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             EEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            99999999999999999999999987532                      34899999999999999999999999999


Q ss_pred             ecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcc
Q 012762          212 RDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPK  291 (457)
Q Consensus       212 rDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (457)
                      |||||+|||++.++.+||+|||++..........                                              
T Consensus       174 ~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~----------------------------------------------  207 (314)
T 2ivs_A          174 RDLAARNILVAEGRKMKISDFGLSRDVYEEDSYV----------------------------------------------  207 (314)
T ss_dssp             CCCSGGGEEEETTTEEEECCCTTCEECTTTSCEE----------------------------------------------
T ss_pred             cccchheEEEcCCCCEEEccccccccccccccce----------------------------------------------
Confidence            9999999999999999999999986543221110                                              


Q ss_pred             hhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHH
Q 012762          292 RRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANV  370 (457)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~  370 (457)
                                            ......||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+
T Consensus       208 ----------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~  265 (314)
T 2ivs_A          208 ----------------------KRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLL  265 (314)
T ss_dssp             ----------------------CSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH
T ss_pred             ----------------------eccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHh
Confidence                                  0012247889999999999889999999999999999999 99999987766655544


Q ss_pred             HhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ... ...+....+++++.++|.+||+.||++||+    +.+|+++
T Consensus       266 ~~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rps----~~~l~~~  305 (314)
T 2ivs_A          266 KTG-HRMERPDNCSEEMYRLMLQCWKQEPDKRPV----FADISKD  305 (314)
T ss_dssp             HTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             hcC-CcCCCCccCCHHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            433 344445568999999999999999999999    8888775

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=6.2e-47  Score=361.12  Aligned_cols=255  Identities=20%  Similarity=0.270  Sum_probs=217.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||+||+|.++     ++..||+|++.....    ....+.+|+++++.++||||+++++++.
T Consensus         3 ~~l~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~   73 (268)
T 3sxs_A            3 MELKREEITLLKELGSGQFGVVKLGKWK-----GQYDVAVKMIKEGSM----SEDEFFQEAQTMMKLSHPKLVKFYGVCS   73 (268)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEET-----TTEEEEEEEECBTTB----CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             eEechhheeeeeeeccCCCceEEEEEec-----CceeEEEEEeccCCC----cHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence            4567789999999999999999999875     567899999976432    3456788999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus        74 ~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           74 KEYPIYIVTEYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             SSSSEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             cCCceEEEEEccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccce
Confidence            999999999999999999988764 2459999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       153 ~~~~~~~~~---------------------------------------------------------------------~~  163 (268)
T 3sxs_A          153 YVLDDQYVS---------------------------------------------------------------------SV  163 (268)
T ss_dssp             ECCTTCEEE---------------------------------------------------------------------CC
T ss_pred             ecchhhhhc---------------------------------------------------------------------cc
Confidence            543221110                                                                     01


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...||+.|+|||++.+..++.++|||||||++|+|++ |..||...........+.... .......+++.+.+++.+||
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l  242 (268)
T 3sxs_A          164 GTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGH-RLYRPHLASDTIYQIMYSCW  242 (268)
T ss_dssp             SCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTC-CCCCCTTSCHHHHHHHHHTT
T ss_pred             CCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCC-CCCCCCcChHHHHHHHHHHc
Confidence            1246788999999999889999999999999999998 999999888777666655443 33334457899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcC
Q 012762          396 VKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.||++||+    +.+++++
T Consensus       243 ~~~p~~Rps----~~~ll~~  258 (268)
T 3sxs_A          243 HELPEKRPT----FQQLLSS  258 (268)
T ss_dssp             CSSGGGSCC----HHHHHHH
T ss_pred             CCChhhCcC----HHHHHHH
Confidence            999999999    9998876

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=6.4e-47  Score=360.78  Aligned_cols=253  Identities=19%  Similarity=0.312  Sum_probs=219.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||+||+|++      .+..||+|++..... .......+.+|++++++++||||+++++++
T Consensus         4 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~------~~~~~avK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~   76 (271)
T 3kmu_A            4 HSGIDFKQLNFLTKLNENHSGELWKGRW------QGNDIVVKVLKVRDW-STRKSRDFNEECPRLRIFSHPNVLPVLGAC   76 (271)
T ss_dssp             CCCCCGGGCEEEEEEEEETTEEEEEEEE------TTEEEEEEEECCTTC-CHHHHHHHHHHGGGGCCCSCTTEECEEEEE
T ss_pred             cCCCCHHHhHHHHHhcCCCcceEEEEEE------CCeeEEEEEeccccc-CHHHHHHHHHHHHHHHhcCCCchhheEEEE
Confidence            3567788999999999999999999986      377899999976532 223456788899999999999999999999


Q ss_pred             EcC--CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCCCEEEec
Q 012762          156 DCP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       156 ~~~--~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      ...  +..++||||+++++|.+++.......+++..++.++.||+.||.|||++|  |+||||||+|||++.++.++|+|
T Consensus        77 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~  156 (271)
T 3kmu_A           77 QSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISM  156 (271)
T ss_dssp             CTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEG
T ss_pred             ccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEe
Confidence            887  78899999999999999998865557999999999999999999999999  99999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+......                                                                       
T Consensus       157 ~~~~~~~~~-----------------------------------------------------------------------  165 (271)
T 3kmu_A          157 ADVKFSFQS-----------------------------------------------------------------------  165 (271)
T ss_dssp             GGSCCTTSC-----------------------------------------------------------------------
T ss_pred             ccceeeecc-----------------------------------------------------------------------
Confidence            988532210                                                                       


Q ss_pred             ccccccccCCCCccCchhhcCCCCCc---cchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGN---AVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK  388 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~---~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (457)
                          ....||+.|+|||++.+..++.   ++|||||||++|||++|+.||.+.........+............++.++.
T Consensus       166 ----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (271)
T 3kmu_A          166 ----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPHVS  241 (271)
T ss_dssp             ----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCHHHH
T ss_pred             ----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCHHHH
Confidence                0235899999999998876544   799999999999999999999998888877777777666666677999999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++|.+||+.||++||+    +.++++
T Consensus       242 ~li~~~l~~~p~~Rps----~~~il~  263 (271)
T 3kmu_A          242 KLMKICMNEDPAKRPK----FDMIVP  263 (271)
T ss_dssp             HHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHHHHcCCChhhCcC----HHHHHH
Confidence            9999999999999999    888875

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=5.6e-47  Score=377.51  Aligned_cols=258  Identities=25%  Similarity=0.368  Sum_probs=206.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh--------hhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL--------VSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~--------~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ++|++.+.||+|+||+||+|.+.     .++.||||++.....        ........+.+|+++|+.++||||+++++
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   96 (362)
T 3pg1_A           22 SPYTVQRFISSGSYGAVCAGVDS-----EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRD   96 (362)
T ss_dssp             CSCEEEEEEEEETTEEEEEEECT-----TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSE
T ss_pred             cceEEeEEeccCCCEEEEEEECC-----CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceee
Confidence            58999999999999999999864     588999999865322        12223477888999999999999999999


Q ss_pred             EEEc-----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          154 TLDC-----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       154 ~~~~-----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      ++..     ...+|+||||+. ++|..++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+|
T Consensus        97 ~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~k  174 (362)
T 3pg1_A           97 IFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDIT  174 (362)
T ss_dssp             EEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEE
T ss_pred             eEEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEE
Confidence            9843     346899999995 6887777653 35799999999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||++........                                                                 
T Consensus       175 l~Dfg~~~~~~~~~~-----------------------------------------------------------------  189 (362)
T 3pg1_A          175 ICDFNLAREDTADAN-----------------------------------------------------------------  189 (362)
T ss_dssp             ECCTTC--------------------------------------------------------------------------
T ss_pred             EEecCcccccccccc-----------------------------------------------------------------
Confidence            999999853321110                                                                 


Q ss_pred             cCCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC----------
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF----------  377 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~----------  377 (457)
                            .....||+.|+|||++.+ ..++.++|||||||++|+|++|+.||.+......+..++......          
T Consensus       190 ------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  263 (362)
T 3pg1_A          190 ------KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSS  263 (362)
T ss_dssp             ------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSC
T ss_pred             ------cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccc
Confidence                  112368999999999987 568999999999999999999999999987766666654321111          


Q ss_pred             --------------CC------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          378 --------------PK------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       378 --------------~~------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                    +.      ...+++.+.+||.+||+.||++||+    +.|+++||||+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt----~~ell~hp~f~~~  323 (362)
T 3pg1_A          264 PSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRIS----TEQALRHPYFESL  323 (362)
T ss_dssp             HHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGTTT
T ss_pred             hhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCC----HHHHHcCchhhhc
Confidence                          00      1345788999999999999999999    9999999999985

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=6.5e-47  Score=363.86  Aligned_cols=257  Identities=20%  Similarity=0.311  Sum_probs=216.1

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++++.||+|+||+||+|.++     ++..||+|++.....    ....+.+|+++++.++|+||++++++
T Consensus        17 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~   87 (283)
T 3gen_A           17 GSWEIDPKDLTFLKELGTGQFGVVKYGKWR-----GQYDVAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYGV   87 (283)
T ss_dssp             CTTBCCGGGEEEEEECC---CEEEEEEEET-----TTEEEEEEEECTTSB----CHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             CCccCCHHHHHhHhhcCCCCCceEEEEEEc-----CCCeEEEEEecCCCC----CHHHHHHHHHHHhcCCCCCEeeEEEE
Confidence            456778889999999999999999999875     577899999976432    34567889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        88 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~  166 (283)
T 3gen_A           88 CTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGL  166 (283)
T ss_dssp             ECSSSSEEEEECCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTG
T ss_pred             EecCCCeEEEEeccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccc
Confidence            99999999999999999999988763 25699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +.........                                                                     .
T Consensus       167 ~~~~~~~~~~---------------------------------------------------------------------~  177 (283)
T 3gen_A          167 SRYVLDDEYT---------------------------------------------------------------------S  177 (283)
T ss_dssp             GGGBCCHHHH---------------------------------------------------------------------S
T ss_pred             cccccccccc---------------------------------------------------------------------c
Confidence            8654321110                                                                     0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++ |+.||...........+... ........+++.+.++|.+
T Consensus       178 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~  256 (283)
T 3gen_A          178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG-LRLYRPHLASEKVYTIMYS  256 (283)
T ss_dssp             TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcc-cCCCCCCcCCHHHHHHHHH
Confidence            011247889999999999999999999999999999998 99999988877666665544 3334445678999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||..||++||+    +.++++|
T Consensus       257 ~l~~~p~~Rps----~~~ll~~  274 (283)
T 3gen_A          257 CWHEKADERPT----FKILLSN  274 (283)
T ss_dssp             TTCSSGGGSCC----HHHHHHH
T ss_pred             HccCChhHCcC----HHHHHHH
Confidence            99999999999    8988876

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=5.4e-47  Score=366.80  Aligned_cols=263  Identities=21%  Similarity=0.314  Sum_probs=212.3

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|+++++||+|+||+||+|++...+..+++.||||++...   .......+.+|+++|++++||||+++++++.
T Consensus         5 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   81 (295)
T 3ugc_A            5 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCY   81 (295)
T ss_dssp             -CCCGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             CcCCHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence            3566789999999999999999999976555678999999999753   2344567888999999999999999999985


Q ss_pred             c--CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          157 C--PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       157 ~--~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      .  ...+|+||||+++++|.+++.... ..+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||+
T Consensus        82 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~  160 (295)
T 3ugc_A           82 SAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGL  160 (295)
T ss_dssp             HHHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCS
T ss_pred             cCCCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcc
Confidence            4  356899999999999999987752 4599999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +...........                                                                   .
T Consensus       161 ~~~~~~~~~~~~-------------------------------------------------------------------~  173 (295)
T 3ugc_A          161 TKVLPQDKEFFK-------------------------------------------------------------------V  173 (295)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             cccccCCcceee-------------------------------------------------------------------e
Confidence            865532211000                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH---------------HHHHHHHhcccCCCC
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------------LTLANVVARALEFPK  379 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------------~~~~~~~~~~~~~~~  379 (457)
                      .....|+..|+|||++.+..++.++|||||||++|||++|..||......               ......+......+.
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (295)
T 3ugc_A          174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR  253 (295)
T ss_dssp             --CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCC
T ss_pred             ccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCC
Confidence            01124788899999999999999999999999999999999998653211               012233334445566


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ...+++++.+||.+||..||++||+    +.||++
T Consensus       254 ~~~~~~~l~~li~~~l~~dp~~Rps----~~el~~  284 (295)
T 3ugc_A          254 PDGCPDEIYMIMTECWNNNVNQRPS----FRDLAL  284 (295)
T ss_dssp             CTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHH
T ss_pred             CcCcCHHHHHHHHHHcCCChhhCCC----HHHHHH
Confidence            6679999999999999999999999    888765

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.2e-47  Score=372.01  Aligned_cols=263  Identities=16%  Similarity=0.197  Sum_probs=211.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++++.||+|+||+||+|.+..........||+|++....  .......+.+|+.+++.++||||+++++++
T Consensus         7 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   84 (325)
T 3kex_A            7 ARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS--GRQSFQAVTDHMLAIGSLDHAHIVRLLGLC   84 (325)
T ss_dssp             CCBCCTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT--SCSCBCSCCHHHHHHHTCCCTTBCCEEEEE
T ss_pred             HhhcCHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc--cHHHHHHHHHHHHHHhcCCCCCcCeEEEEE
Confidence            345677899999999999999999999875333333447888775432  122234566799999999999999999998


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      . ++..++||||+.+++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        85 ~-~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a  162 (325)
T 3kex_A           85 P-GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA  162 (325)
T ss_dssp             C-BSSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGG
T ss_pred             c-CCccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcc
Confidence            6 46789999999999999888764 357899999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.........                                                                    ..
T Consensus       163 ~~~~~~~~~~--------------------------------------------------------------------~~  174 (325)
T 3kex_A          163 DLLPPDDKQL--------------------------------------------------------------------LY  174 (325)
T ss_dssp             GGSCCCTTCC--------------------------------------------------------------------C-
T ss_pred             cccCcccccc--------------------------------------------------------------------cc
Confidence            7653221100                                                                    01


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....||..|+|||++.+..++.++|||||||++|+|++ |..||.+.........+... ...+....++.++.++|.+|
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~  253 (325)
T 3kex_A          175 SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKG-ERLAQPQICTIDVYMVMVKC  253 (325)
T ss_dssp             ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTT-CBCCCCTTBCTTTTHHHHHH
T ss_pred             cCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHH
Confidence            12358889999999999999999999999999999999 99999987766655554433 34444455888999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |..||.+||+    +.++++|
T Consensus       254 l~~dp~~Rps----~~el~~~  270 (325)
T 3kex_A          254 WMIDENIRPT----FKELANE  270 (325)
T ss_dssp             TCSCTTTSCC----HHHHHHH
T ss_pred             cCCChhhCcC----HHHHHHH
Confidence            9999999999    8887765

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.1e-46  Score=362.15  Aligned_cols=261  Identities=23%  Similarity=0.367  Sum_probs=209.2

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||+||+|.+.... ..+..||+|++...  ........+.+|+.+++.++||||+++++++
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   85 (281)
T 1mp8_A            9 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPE-NPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVI   85 (281)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ceEEehHHeEEEeEeeecCCeeEEEEEEecCC-CCceEEEEEecccc--CCHHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence            45677789999999999999999999986422 35678999998653  2334556788899999999999999999998


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      . ++..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        86 ~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  163 (281)
T 1mp8_A           86 T-ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS  163 (281)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC----
T ss_pred             c-cCccEEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccc
Confidence            5 56789999999999999998764 346999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.........                                                                     .
T Consensus       164 ~~~~~~~~~~---------------------------------------------------------------------~  174 (281)
T 1mp8_A          164 RYMEDSTYYK---------------------------------------------------------------------A  174 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCcccccc---------------------------------------------------------------------c
Confidence            6543211100                                                                     0


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+.... ..+....++.++.++|.+|
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~li~~~  253 (281)
T 1mp8_A          175 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE-RLPMPPNCPPTLYSLMTKC  253 (281)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC-CCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHH
Confidence            01247889999999999999999999999999999996 999999887777666655443 3444556899999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |..||++||+    +.+++++
T Consensus       254 l~~~p~~Rps----~~~l~~~  270 (281)
T 1mp8_A          254 WAYDPSRRPR----FTELKAQ  270 (281)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             ccCChhhCcC----HHHHHHH
Confidence            9999999999    8888764

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=9e-47  Score=364.70  Aligned_cols=265  Identities=25%  Similarity=0.365  Sum_probs=213.3

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|.....||+|+||+||+|.+.    .+++.||+|++....   ......+.+|+++++.++||||+++++++.
T Consensus        17 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   89 (295)
T 2clq_A           17 YDYEYDENGDRVVLGKGTYGIVYAGRDL----SNQVRIAIKEIPERD---SRYSQPLHEEIALHKHLKHKNIVQYLGSFS   89 (295)
T ss_dssp             EEECBCTTSSBCEEEECSSSEEEEEEET----TTCCEEEEEEEECCC---C---HHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             ccccccCCCCcEEEeecCcEEEEEEEEC----CCCeEEEEEEccCCc---hHHHHHHHHHHHHHHhCCCCCEeeEeeEEE
Confidence            3455566777779999999999999986    478899999997542   234566888999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-CCCEEEeccCC
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-DGHIMLTDFDL  234 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-~~~vkl~DFG~  234 (457)
                      ..+..++||||+++++|.+++.... ...+++..++.++.||+.||.|||++||+|+||||+|||++. ++.+||+|||+
T Consensus        90 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~  169 (295)
T 2clq_A           90 ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGT  169 (295)
T ss_dssp             ETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTT
T ss_pred             eCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeeccc
Confidence            9999999999999999999987753 235678999999999999999999999999999999999987 89999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                      .
T Consensus       170 ~~~~~~~~~----------------------------------------------------------------------~  179 (295)
T 2clq_A          170 SKRLAGINP----------------------------------------------------------------------C  179 (295)
T ss_dssp             CEESCC--------------------------------------------------------------------------
T ss_pred             ccccCCCCC----------------------------------------------------------------------c
Confidence            865432110                                                                      0


Q ss_pred             cccccCCCCccCchhhcCCC--CCccchhhhhhHHHHHHhcCCCCCCCCChHHH-HHHHHhcccCCCCCCCCChHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDHELT-LANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~--~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                      .....||+.|+|||++.+..  ++.++|||||||++|+|++|+.||........ ................++.++.+||
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  259 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFI  259 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHH
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHH
Confidence            11235899999999997654  78999999999999999999999976543322 2222222222233456889999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .+||..||++||+    +.++++||||+...
T Consensus       260 ~~~l~~dp~~Rps----~~~ll~~~~~~~~~  286 (295)
T 2clq_A          260 LKCFEPDPDKRAC----ANDLLVDEFLKVSS  286 (295)
T ss_dssp             HHTTCSSTTTSCC----HHHHHTSGGGCC--
T ss_pred             HHHccCChhhCCC----HHHHhcChhhhhcc
Confidence            9999999999999    99999999998644

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.8e-47  Score=369.93  Aligned_cols=265  Identities=22%  Similarity=0.327  Sum_probs=211.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.++||+|+||+||+|.++    .+++.||+|++...   .......+.+|+++|++++||||+++++++.+
T Consensus         6 ~~~~~~~~~~~~lG~G~~g~V~~~~~~----~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   78 (310)
T 3s95_A            6 IFRPSDLIHGEVLGKGCFGQAIKVTHR----ETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK   78 (310)
T ss_dssp             EECGGGEEEEEEEECCSSEEEEEEEET----TTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE
T ss_pred             eeChhHeeccceecCCCCEEEEEEEEC----CCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEec
Confidence            356689999999999999999999986    47889999988543   23456678889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++..|+||||+++++|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           79 DKRLNFITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARL  157 (310)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEE
T ss_pred             CCeeEEEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeeccccee
Confidence            99999999999999999999874 36799999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ...........                                                        .....+.......
T Consensus       158 ~~~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~~  181 (310)
T 3s95_A          158 MVDEKTQPEGL--------------------------------------------------------RSLKKPDRKKRYT  181 (310)
T ss_dssp             CC----------------------------------------------------------------------------CC
T ss_pred             ccccccccccc--------------------------------------------------------ccccccccccccc
Confidence            54322111000                                                        0000011112224


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-----HHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-----TLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      .+||+.|+|||++.+..++.++|||||||++|||++|..||.......     ........    .....+++.+.++|.
T Consensus       182 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~li~  257 (310)
T 3s95_A          182 VVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR----YCPPNCPPSFFPITV  257 (310)
T ss_dssp             CCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH----TCCTTCCTTHHHHHH
T ss_pred             cCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc----cCCCCCCHHHHHHHH
Confidence            579999999999999999999999999999999999999987643211     11111111    123458889999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +||+.||++||+    +.+|++
T Consensus       258 ~~l~~dP~~Rps----~~~l~~  275 (310)
T 3s95_A          258 RCCDLDPEKRPS----FVKLEH  275 (310)
T ss_dssp             HHTCSSGGGSCC----HHHHHH
T ss_pred             HHccCChhhCcC----HHHHHH
Confidence            999999999999    888876

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=9.6e-47  Score=372.58  Aligned_cols=264  Identities=20%  Similarity=0.292  Sum_probs=219.6

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ..+..++|++.+.||+|+||+||+|++.... ..+++.||+|++....  .......+.+|++++++++||||+++++++
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~  119 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVC  119 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            3456679999999999999999999986321 1356899999997642  234456788899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeec
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP----------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRD  213 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~----------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrD  213 (457)
                      ...+..|+||||+++++|.+++....                      ...+++..++.++.||+.||.|||++||+|||
T Consensus       120 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~D  199 (343)
T 1luf_A          120 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  199 (343)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            99999999999999999999987742                      15689999999999999999999999999999


Q ss_pred             CCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchh
Q 012762          214 LKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRR  293 (457)
Q Consensus       214 IKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (457)
                      |||+|||++.++.+||+|||+++........                                                 
T Consensus       200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-------------------------------------------------  230 (343)
T 1luf_A          200 LATRNCLVGENMVVKIADFGLSRNIYSADYY-------------------------------------------------  230 (343)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGCB-------------------------------------------------
T ss_pred             CCcceEEECCCCeEEEeecCCCcccccCccc-------------------------------------------------
Confidence            9999999999999999999997543211000                                                 


Q ss_pred             ccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHh
Q 012762          294 RKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVA  372 (457)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~  372 (457)
                                         .......||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+..
T Consensus       231 -------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~  291 (343)
T 1luf_A          231 -------------------KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRD  291 (343)
T ss_dssp             -------------------C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred             -------------------cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhC
Confidence                               00112358999999999999999999999999999999999 9999999887777766665


Q ss_pred             cccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       373 ~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ... .+....++.++.+||.+||..||++||+    +.+++++
T Consensus       292 ~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps----~~~~~~~  329 (343)
T 1luf_A          292 GNI-LACPENCPLELYNLMRLCWSKLPADRPS----FCSIHRI  329 (343)
T ss_dssp             TCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCc-CCCCCCCCHHHHHHHHHHcccCcccCCC----HHHHHHH
Confidence            543 2334468899999999999999999999    8888764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=3.7e-47  Score=372.39  Aligned_cols=277  Identities=17%  Similarity=0.232  Sum_probs=227.4

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEec-cCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~-~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ..+.+..++|++.+.||+|+||+||+|.++. ....+++.||+|++....  .......+.+|+++++.++||||+++++
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~   95 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLG   95 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence            4566777899999999999999999998763 122357889999997542  2234456788999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQP--------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG  225 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~  225 (457)
                      ++...+..|+||||+++++|.+++....        ...+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus        96 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~  175 (322)
T 1p4o_A           96 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  175 (322)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCC
Confidence            9999999999999999999998887531        24578999999999999999999999999999999999999999


Q ss_pred             CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCc
Q 012762          226 HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE  305 (457)
Q Consensus       226 ~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (457)
                      .+||+|||+++........                                                             
T Consensus       176 ~~kl~Dfg~~~~~~~~~~~-------------------------------------------------------------  194 (322)
T 1p4o_A          176 TVKIGDFGMTRDIYETDYY-------------------------------------------------------------  194 (322)
T ss_dssp             CEEECCTTCCCGGGGGGCE-------------------------------------------------------------
T ss_pred             eEEECcCcccccccccccc-------------------------------------------------------------
Confidence            9999999997543211100                                                             


Q ss_pred             ccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCC
Q 012762          306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (457)
                             .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+..... .+....++
T Consensus       195 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~  266 (322)
T 1p4o_A          195 -------RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGL-LDKPDNCP  266 (322)
T ss_dssp             -------EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCC-CCCCTTCC
T ss_pred             -------ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCc-CCCCCCCC
Confidence                   00112357899999999999999999999999999999999 8999998877776666655433 33345689


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcC------CCCCCCCchhh
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRH------QFFNGVNWALL  426 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h------p~f~~~~~~~~  426 (457)
                      ..+.+||.+||..||++||+    +.++++|      ++|+.++|...
T Consensus       267 ~~l~~li~~~l~~dp~~Rps----~~e~l~~L~~~~~~~~~~~~~~~~  310 (322)
T 1p4o_A          267 DMLFELMRMCWQYNPKMRPS----FLEIISSIKEEMEPGFREVSFYYS  310 (322)
T ss_dssp             HHHHHHHHHHTCSSGGGSCC----HHHHHHHHGGGSCTTHHHHCSTTS
T ss_pred             HHHHHHHHHHcCCCcccCcC----HHHHHHHHHHhhccCCcccccccc
Confidence            99999999999999999999    8888776      77777776544

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.7e-46  Score=367.84  Aligned_cols=266  Identities=20%  Similarity=0.279  Sum_probs=215.9

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ....+..++|++.+.||+|+||+||+|.++..+...+..||+|++....  .......+.+|+++++.++||||++++++
T Consensus        37 ~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~  114 (333)
T 1mqb_A           37 FTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGV  114 (333)
T ss_dssp             -CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence            3456778899999999999999999999875444456679999997542  23345568889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..||||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       115 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  193 (333)
T 1mqb_A          115 ISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGL  193 (333)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             EecCCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCc
Confidence            99999999999999999999998764 35799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                   ..
T Consensus       194 ~~~~~~~~~~~-------------------------------------------------------------------~~  206 (333)
T 1mqb_A          194 SRVLEDDPEAT-------------------------------------------------------------------YT  206 (333)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhccccccc-------------------------------------------------------------------cc
Confidence            86543211100                                                                   00


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........+.. ....+....++..+.++|.+
T Consensus       207 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~  285 (333)
T 1mqb_A          207 TSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIND-GFRLPTPMDCPSAIYQLMMQ  285 (333)
T ss_dssp             ----CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHT-TCCCCCCTTCBHHHHHHHHH
T ss_pred             cCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHC-CCcCCCcccCCHHHHHHHHH
Confidence            001236889999999999999999999999999999998 9999998877666655544 34555556789999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||..||++||+    +.+++++
T Consensus       286 ~l~~~p~~Rps----~~~l~~~  303 (333)
T 1mqb_A          286 CWQQERARRPK----FADIVSI  303 (333)
T ss_dssp             HTCSSTTTSCC----HHHHHHH
T ss_pred             HcCCChhhCcC----HHHHHHH
Confidence            99999999999    7777664

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.4e-47  Score=381.76  Aligned_cols=260  Identities=21%  Similarity=0.342  Sum_probs=218.2

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.++    .+++.||||+++..  ........+.+|+++|+.++||||++++++
T Consensus       107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  180 (377)
T 3cbl_A          107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLR----ADNTLVAVKSCRET--LPPDLKAKFLQEARILKQYSHPNIVRLIGV  180 (377)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEET----TTCCEEEEEECCTT--SCHHHHTTTTHHHHHHTTCCCTTBCCEEEE
T ss_pred             cccEEchHHeEEeeEeccCCCCeEEEEEEe----cCCeEEEEEEcccc--CCHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            456778889999999999999999999986    37889999998754  222344567789999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..||||||+++|+|.+++... ...+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus       181 ~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~  259 (377)
T 3cbl_A          181 CTQKQPIYIVMELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGM  259 (377)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGG
T ss_pred             EecCCCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCC
Confidence            99999999999999999999988764 24589999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                    .
T Consensus       260 s~~~~~~~~~~--------------------------------------------------------------------~  271 (377)
T 3cbl_A          260 SREEADGVYAA--------------------------------------------------------------------S  271 (377)
T ss_dssp             CEECTTSEEEC--------------------------------------------------------------------C
T ss_pred             ceecCCCceee--------------------------------------------------------------------c
Confidence            86433211000                                                                    0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....++..|+|||++.+..++.++|||||||++|||++ |..||.+....+....+ ......+.+..+++++.+||.+
T Consensus       272 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~  350 (377)
T 3cbl_A          272 GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFV-EKGGRLPCPELCPDAVFRLMEQ  350 (377)
T ss_dssp             SSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHH-HTTCCCCCCTTCCHHHHHHHHH
T ss_pred             CCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH-HcCCCCCCCCCCCHHHHHHHHH
Confidence            001135778999999998889999999999999999998 99999988776555444 4445566666789999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||++||+    +.+|++
T Consensus       351 cl~~dP~~Rps----~~~i~~  367 (377)
T 3cbl_A          351 CWAYEPGQRPS----FSTIYQ  367 (377)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HcCCCchhCcC----HHHHHH
Confidence            99999999999    887765

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=2.5e-46  Score=360.49  Aligned_cols=258  Identities=22%  Similarity=0.325  Sum_probs=222.4

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.++.    ++..||+|++....    .....+.+|+++++.++||||++++++
T Consensus         6 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~----~~~~vaiK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~   77 (288)
T 3kfa_A            6 DKWEMERTDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV   77 (288)
T ss_dssp             CTTBCCGGGEEEEEESGGGTTCSEEEEEEGG----GTEEEEEEEECSCS----THHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hcccccccceeEEeecCCCCceeEEEeEecC----CCEEEEEEecCcCH----HHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            4677888999999999999999999999873    68899999997532    345678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||+
T Consensus        78 ~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~  157 (288)
T 3kfa_A           78 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGL  157 (288)
T ss_dssp             ECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCG
T ss_pred             EccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCcc
Confidence            99999999999999999999999887667799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +..........                                                                     
T Consensus       158 ~~~~~~~~~~~---------------------------------------------------------------------  168 (288)
T 3kfa_A          158 SRLMTGDTYTA---------------------------------------------------------------------  168 (288)
T ss_dssp             GGTSCSSSSEE---------------------------------------------------------------------
T ss_pred             ceeccCCcccc---------------------------------------------------------------------
Confidence            86554221110                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+ ......+....+++.+.+||.+
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~  247 (288)
T 3kfa_A          169 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELL-EKDYRMERPEGCPEKVYELMRA  247 (288)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH-HTTCCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH-hccCCCCCCCCCCHHHHHHHHH
Confidence            112347889999999999999999999999999999999 99999887766555444 3444555556789999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||.+||+    +.++++
T Consensus       248 ~l~~dp~~Rps----~~~~~~  264 (288)
T 3kfa_A          248 CWQWNPSDRPS----FAEIHQ  264 (288)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HhCCChhhCcC----HHHHHH
Confidence            99999999999    888865

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.3e-46  Score=384.40  Aligned_cols=251  Identities=20%  Similarity=0.337  Sum_probs=214.8

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.+      .++.||||+++...     ....+.+|+++|++++||||++++++
T Consensus       186 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~------~~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~  254 (450)
T 1k9a_A          186 SGWALNMKELKLLQTIGKGEFGDVMLGDY------RGNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGV  254 (450)
T ss_dssp             TTCBCCGGGEEEEEEEEECSSEEEEEEEE------TTEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             cccccChHHeEEEeeecCcCCeeEEEEEe------cCCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEE
Confidence            34678889999999999999999999986      36789999997542     34568889999999999999999999


Q ss_pred             EEcCC-cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          155 LDCPR-WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       155 ~~~~~-~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +...+ .+||||||+++|+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus       255 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG  334 (450)
T 1k9a_A          255 IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFG  334 (450)
T ss_dssp             EECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCC
Confidence            87655 79999999999999999987655568999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                       
T Consensus       335 ~a~~~~~~~-----------------------------------------------------------------------  343 (450)
T 1k9a_A          335 LTKEASSTQ-----------------------------------------------------------------------  343 (450)
T ss_dssp             TCEECC--------------------------------------------------------------------------
T ss_pred             Ccccccccc-----------------------------------------------------------------------
Confidence            986432110                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                        ....++..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+. ...+.+.+..+++++.+||.
T Consensus       344 --~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~p~~~~~~l~~li~  420 (450)
T 1k9a_A          344 --DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVE-KGYKMDAPDGCPPAVYDVMK  420 (450)
T ss_dssp             -----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHH-TTCCCCCCTTCCHHHHHHHH
T ss_pred             --cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCcCCHHHHHHHH
Confidence              01137889999999999999999999999999999998 999999887766665554 34455666679999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +||..||++||+    +.+|++
T Consensus       421 ~cl~~dp~~Rpt----~~~l~~  438 (450)
T 1k9a_A          421 NCWHLDAATRPT----FLQLRE  438 (450)
T ss_dssp             HHTCSSGGGSCC----HHHHHH
T ss_pred             HHcCCChhHCcC----HHHHHH
Confidence            999999999999    777754

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.4e-46  Score=369.85  Aligned_cols=262  Identities=19%  Similarity=0.259  Sum_probs=210.4

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|+++++||+|+||+||+|++..........||+|.+....  .......+.+|++++++++||||+++++++.
T Consensus        10 ~~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~   87 (327)
T 3poz_A           10 RILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEILDEAYVMASVDNPHVCRLLGICL   87 (327)
T ss_dssp             EECCGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEE
T ss_pred             hhcCHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEe
Confidence            34566789999999999999999999875333334456888875432  2344567888999999999999999999998


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .+. .++||||+.+|+|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus        88 ~~~-~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           88 TST-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             SSS-EEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             cCC-eEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCccee
Confidence            754 789999999999999887753 569999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                    ...
T Consensus       166 ~~~~~~~~~--------------------------------------------------------------------~~~  177 (327)
T 3poz_A          166 LLGAEEKEY--------------------------------------------------------------------HAE  177 (327)
T ss_dssp             HHTTTCC-------------------------------------------------------------------------
T ss_pred             EccCCcccc--------------------------------------------------------------------ccc
Confidence            543211100                                                                    001


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...||+.|+|||++.+..++.++|||||||++|||++ |..||.+........ ++......+....++.++.+++.+||
T Consensus       178 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l  256 (327)
T 3poz_A          178 GGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS-ILEKGERLPQPPICTIDVYMIMVKCW  256 (327)
T ss_dssp             --CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH-HHHTTCCCCCCTTBCHHHHHHHHHHT
T ss_pred             CCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHH-HHHcCCCCCCCccCCHHHHHHHHHHc
Confidence            2247889999999999999999999999999999999 999999876655444 44444455666678999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcC
Q 012762          396 VKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +.||.+||+    +.+++++
T Consensus       257 ~~~p~~Rps----~~ell~~  272 (327)
T 3poz_A          257 MIDADSRPK----FRELIIE  272 (327)
T ss_dssp             CSCGGGSCC----HHHHHHH
T ss_pred             CCChhhCCC----HHHHHHH
Confidence            999999999    8888765

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=9.3e-47  Score=368.20  Aligned_cols=266  Identities=19%  Similarity=0.282  Sum_probs=219.4

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||+||+|.+... +..+++.||||++....  .......+.+|+++|+++ +||||+++++
T Consensus        21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC--CcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            3456678999999999999999999987532 23577899999997642  233456788899999999 7999999999


Q ss_pred             EEEcCC-cEEEEEeecCCCChHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCC
Q 012762          154 TLDCPR-WSCLLTEFCPGGDLHVLRQRQPD--------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN  218 (457)
Q Consensus       154 ~~~~~~-~~~lV~E~~~~~sL~~~~~~~~~--------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~N  218 (457)
                      ++...+ ..|+||||+++++|.+++.....              ..+++..++.++.||+.||.|||++||+||||||+|
T Consensus        99 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~N  178 (316)
T 2xir_A           99 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARN  178 (316)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccce
Confidence            987654 58999999999999999987532              128999999999999999999999999999999999


Q ss_pred             eEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          219 VLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       219 Ill~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ||++.++.+||+|||+++........                                                      
T Consensus       179 il~~~~~~~kl~Dfg~~~~~~~~~~~------------------------------------------------------  204 (316)
T 2xir_A          179 ILLSEKNVVKICDFGLARDIYKDPDY------------------------------------------------------  204 (316)
T ss_dssp             EEECGGGCEEECCCGGGSCTTTCTTS------------------------------------------------------
T ss_pred             EEECCCCCEEECCCccccccccCccc------------------------------------------------------
Confidence            99999999999999998654321110                                                      


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCC
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEF  377 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~  377 (457)
                                    .......||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..........+......
T Consensus       205 --------------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~  270 (316)
T 2xir_A          205 --------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM  270 (316)
T ss_dssp             --------------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCC
T ss_pred             --------------eeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccC
Confidence                          01113358999999999999999999999999999999998 999998876555555555554445


Q ss_pred             CCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          378 PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       378 ~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +....++.++.++|.+||..||.+||+    +.++++|
T Consensus       271 ~~~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~~  304 (316)
T 2xir_A          271 RAPDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  304 (316)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            555568999999999999999999999    9999876

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=8.8e-47  Score=377.13  Aligned_cols=260  Identities=23%  Similarity=0.362  Sum_probs=209.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-----------
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-----------  144 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-----------  144 (457)
                      ...+..++|++.+.||+|+||+||+|.++    .+++.||||++....    .....+.+|+++++++.           
T Consensus        13 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~   84 (373)
T 1q8y_A           13 GEPYKDARYILVRKLGWGHFSTVWLAKDM----VNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMG   84 (373)
T ss_dssp             TCEETTTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CCcccCCeEEEEEeeeecCCeEEEEEEec----CCCcEEEEEEecCCc----cchhhhhHHHHHHHHhhcccccchhccc
Confidence            34456689999999999999999999976    478999999997543    23456677999988875           


Q ss_pred             CCCCceEEEEEEcCC----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCe
Q 012762          145 HPFLPTLYATLDCPR----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENV  219 (457)
Q Consensus       145 H~nIv~l~~~~~~~~----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NI  219 (457)
                      |+||+++++++...+    .+++||||+ +++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+||
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NI  163 (373)
T 1q8y_A           85 ANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENV  163 (373)
T ss_dssp             HTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGE
T ss_pred             cchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHe
Confidence            899999999997654    789999999 99999999887667799999999999999999999998 999999999999


Q ss_pred             EEcc------CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchh
Q 012762          220 LVRS------DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRR  293 (457)
Q Consensus       220 ll~~------~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (457)
                      ||+.      .+.+||+|||++......                                                    
T Consensus       164 ll~~~~~~~~~~~~kl~Dfg~a~~~~~~----------------------------------------------------  191 (373)
T 1q8y_A          164 LMEIVDSPENLIQIKIADLGNACWYDEH----------------------------------------------------  191 (373)
T ss_dssp             EEEEEETTTTEEEEEECCCTTCEETTBC----------------------------------------------------
T ss_pred             EEeccCCCcCcceEEEcccccccccCCC----------------------------------------------------
Confidence            9954      347999999998644311                                                    


Q ss_pred             ccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC------hHHHH
Q 012762          294 RKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID------HELTL  367 (457)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~------~~~~~  367 (457)
                                           .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+..      ....+
T Consensus       192 ---------------------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~  250 (373)
T 1q8y_A          192 ---------------------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHI  250 (373)
T ss_dssp             ---------------------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHH
T ss_pred             ---------------------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHH
Confidence                                 012358999999999999999999999999999999999999998654      22233


Q ss_pred             HHHHhcccCCC----------------------------------------CCCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          368 ANVVARALEFP----------------------------------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       368 ~~~~~~~~~~~----------------------------------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                      ..++......|                                        ....++.++.+||.+||+.||++||+   
T Consensus       251 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt---  327 (373)
T 1q8y_A          251 AQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD---  327 (373)
T ss_dssp             HHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC---
T ss_pred             HHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC---
Confidence            33332111111                                        01123467889999999999999999   


Q ss_pred             ChHHHhcCCCCCCC
Q 012762          408 GATAIKRHQFFNGV  421 (457)
Q Consensus       408 ~~~~ll~hp~f~~~  421 (457)
                       +.|||+||||+..
T Consensus       328 -~~ell~hp~f~~~  340 (373)
T 1q8y_A          328 -AGGLVNHPWLKDT  340 (373)
T ss_dssp             -HHHHHTCGGGTTC
T ss_pred             -HHHHhhChhhhcc
Confidence             9999999999963

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=4.7e-46  Score=360.21  Aligned_cols=270  Identities=17%  Similarity=0.251  Sum_probs=216.1

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~  156 (457)
                      .+..++|++.+.||+|+||+||+|.+.    .+++.||||++....     ....+.+|+++++.+ +|+||+++++++.
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~   76 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNL----LNNQQVAIKFEPRRS-----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ   76 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEET----TTTEEEEEEEEECCT-----TSCCHHHHHHHHHHTTTCTTCCCEEEEEE
T ss_pred             cccccceEEEEEEeecCCEEEEEEEEC----CCCcEEEEEEeccCC-----ccHHHHHHHHHHHHHhcCCCCCeEEeecC
Confidence            455678999999999999999999976    478999999986542     233467799999999 7999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC-----EEEec
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH-----IMLTD  231 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~-----vkl~D  231 (457)
                      .....|+||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.     +||+|
T Consensus        77 ~~~~~~lv~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~D  154 (298)
T 1csn_A           77 EGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVD  154 (298)
T ss_dssp             ETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECC
T ss_pred             CCceeEEEEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEE
Confidence            999999999999 99999999875 346999999999999999999999999999999999999987776     99999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++............                                                               
T Consensus       155 fg~~~~~~~~~~~~~~~---------------------------------------------------------------  171 (298)
T 1csn_A          155 FGMVKFYRDPVTKQHIP---------------------------------------------------------------  171 (298)
T ss_dssp             CTTCEESBCTTTCCBCC---------------------------------------------------------------
T ss_pred             Ccccccccccccccccc---------------------------------------------------------------
Confidence            99987554321110000                                                               


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCC---CCCCCh
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPK---EPSVPG  385 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~---~~~~~~  385 (457)
                      ........||+.|+|||++.+..++.++|||||||++|||++|+.||.+..   ....+..+.......+.   ...+++
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (298)
T 1csn_A          172 YREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPE  251 (298)
T ss_dssp             CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCH
T ss_pred             ccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcH
Confidence            001123469999999999999999999999999999999999999998743   33344444433322221   235889


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHh----------cCCCCCCCCchh
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIK----------RHQFFNGVNWAL  425 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll----------~hp~f~~~~~~~  425 (457)
                      ++.+|+.+||+.||++||+    +.+|+          +......++|..
T Consensus       252 ~l~~li~~~l~~dp~~RP~----~~~l~~~l~~~~~~~~~~~~~~~dw~~  297 (298)
T 1csn_A          252 EFYKYMHYARNLAFDATPD----YDYLQGLFSKVLERLNTTEDENFDWNL  297 (298)
T ss_dssp             HHHHHHHHHHHCCTTCCCC----HHHHHHHHHHHHHHTTCCSCSCCGGGC
T ss_pred             HHHHHHHHHhcCCcccCCC----HHHHHHHHHHHHHhcCCCCCCccccCC
Confidence            9999999999999999999    66664          334555567753

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.6e-46  Score=362.02  Aligned_cols=254  Identities=20%  Similarity=0.235  Sum_probs=207.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      .+..++|++.+.||+|+||+||+|+++....   ..+..||+|++....   ......+.+|++++++++||||++++++
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~   80 (289)
T 4fvq_A            4 KIRNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH---RNYSESFFEAASMMSKLSHKHLVLNYGV   80 (289)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG---GGGHHHHHHHHHHHHTSCCTTBCCEEEE
T ss_pred             EechhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc---HHHHHHHHHHHHHHHhCCCCCEeEEEEE
Confidence            4567899999999999999999999874210   012579999997543   3455678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC--------
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH--------  226 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~--------  226 (457)
                      +..++..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.        
T Consensus        81 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           81 CVCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             ECCTTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccce
Confidence            99999999999999999999999874 234999999999999999999999999999999999999998887        


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      +||+|||++......                                                                 
T Consensus       160 ~kl~Dfg~~~~~~~~-----------------------------------------------------------------  174 (289)
T 4fvq_A          160 IKLSDPGISITVLPK-----------------------------------------------------------------  174 (289)
T ss_dssp             EEECCCCSCTTTSCH-----------------------------------------------------------------
T ss_pred             eeeccCcccccccCc-----------------------------------------------------------------
Confidence            999999997543211                                                                 


Q ss_pred             cccCCccccccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                               ....||+.|+|||++.+ ..++.++|||||||++|||++|..|+...................+.  ..+.
T Consensus       175 ---------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  243 (289)
T 4fvq_A          175 ---------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPA--PKAA  243 (289)
T ss_dssp             ---------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC--CSSC
T ss_pred             ---------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCC--CCCH
Confidence                     12358899999999987 66899999999999999999955444443333334444444444443  3678


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ++.+||.+||+.||++||+    +.++++|
T Consensus       244 ~l~~li~~~l~~dp~~Rps----~~~ll~~  269 (289)
T 4fvq_A          244 ELANLINNCMDYEPDHRPS----FRAIIRD  269 (289)
T ss_dssp             TTHHHHHHHSCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            8999999999999999999    9999886

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=5.2e-47  Score=374.49  Aligned_cols=255  Identities=26%  Similarity=0.380  Sum_probs=184.8

Q ss_pred             ccCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ...++|.+.+ .||+|+||+||+|.++    .+++.||||++....       .........++.++||||+++++++..
T Consensus        25 ~~~~~y~i~~~~lG~G~~g~V~~~~~~----~~~~~vavK~~~~~~-------~~~~e~~~~~~~~~h~~i~~~~~~~~~   93 (336)
T 3fhr_A           25 AVTDDYQLSKQVLGLGVNGKVLECFHR----RTGQKCALKLLYDSP-------KARQEVDHHWQASGGPHIVCILDVYEN   93 (336)
T ss_dssp             CGGGTEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEESSH-------HHHHHHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             cccceeEecceeeeeCCCeEEEEEEEC----CCCCEEEEEEecCcH-------HHHHHHHHHHHhcCCCChHHHHHHHhh
Confidence            3446899965 6999999999999987    478899999996531       111222334666799999999999976


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEe
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLT  230 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~  230 (457)
                          ....|+||||++|++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+
T Consensus        94 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~  173 (336)
T 3fhr_A           94 MHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLT  173 (336)
T ss_dssp             EETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred             ccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEe
Confidence                456899999999999999998876668999999999999999999999999999999999999986   4569999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++.......                                                                    
T Consensus       174 Dfg~~~~~~~~~--------------------------------------------------------------------  185 (336)
T 3fhr_A          174 DFGFAKETTQNA--------------------------------------------------------------------  185 (336)
T ss_dssp             CCTTCEEC------------------------------------------------------------------------
T ss_pred             ccccceeccccc--------------------------------------------------------------------
Confidence            999986433111                                                                    


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHH----HHHHHhcccCC--CCCCCCC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT----LANVVARALEF--PKEPSVP  384 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~----~~~~~~~~~~~--~~~~~~~  384 (457)
                          .....||+.|+|||++.+..++.++|||||||++|+|++|..||........    ...+......+  +....++
T Consensus       186 ----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (336)
T 3fhr_A          186 ----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVS  261 (336)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCC
T ss_pred             ----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCC
Confidence                0123589999999999888899999999999999999999999987654332    22222222222  2335689


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .++.+||.+||..||.+||+    +.|+++||||+.
T Consensus       262 ~~~~~li~~~L~~dP~~Rpt----~~ell~hp~~~~  293 (336)
T 3fhr_A          262 EDAKQLIRLLLKTDPTERLT----ITQFMNHPWINQ  293 (336)
T ss_dssp             HHHHHHHHHHSCSSGGGSCC----HHHHHHSHHHHT
T ss_pred             HHHHHHHHHHCCCChhHCcC----HHHHhcCccccc
Confidence            99999999999999999999    999999999985

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.8e-46  Score=375.96  Aligned_cols=263  Identities=21%  Similarity=0.304  Sum_probs=209.2

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|.+.+.||+|+||+||+|+++.. ...+..||||+++...  .......+.+|+++|++++||||+++++++
T Consensus        39 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~  115 (373)
T 2qol_A           39 AKELDATNISIDKVVGAGEFGEVCSGRLKLP-SKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVV  115 (373)
T ss_dssp             SCBCCGGGCCCCEEEEECSSSEEEEC-CBCT-TSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             HhhcCHhhceeeeEEeeCCCeEEEEEEEecC-CCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence            3456778999999999999999999987632 2367789999997542  234456788899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+..||||||+++++|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus       116 ~~~~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a  194 (373)
T 2qol_A          116 TKSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG  194 (373)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---
T ss_pred             eeCCceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccc
Confidence            9999999999999999999998764 357999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +..........                                                                   ..
T Consensus       195 ~~~~~~~~~~~-------------------------------------------------------------------~~  207 (373)
T 2qol_A          195 RVLEDDPEAAY-------------------------------------------------------------------TT  207 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCccce-------------------------------------------------------------------ec
Confidence            65532111000                                                                   00


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....+|..|+|||++.+..++.++|||||||++|||++ |+.||.+.........+. .....+....++..+.+||.+|
T Consensus       208 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~c  286 (373)
T 2qol_A          208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVD-EGYRLPPPMDCPAALYQLMLDC  286 (373)
T ss_dssp             ------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHH-TTEECCCCTTCBHHHHHHHHHH
T ss_pred             cCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCccccHHHHHHHHHH
Confidence            01136788999999999999999999999999999997 999999887766655544 4445555667899999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |+.||++||+    +.+|++
T Consensus       287 l~~dp~~RPs----~~~i~~  302 (373)
T 2qol_A          287 WQKDRNNRPK----FEQIVS  302 (373)
T ss_dssp             TCSSGGGSCC----HHHHHH
T ss_pred             hCcChhhCcC----HHHHHH
Confidence            9999999999    777664

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=2.1e-46  Score=389.06  Aligned_cols=258  Identities=21%  Similarity=0.322  Sum_probs=221.9

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.++||+|+||+||+|.++.    ++..||||+++...    .....+.+|+++|++++||||++++++
T Consensus       213 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~l~~~  284 (495)
T 1opk_A          213 DKWEMERTDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV  284 (495)
T ss_dssp             SCCBCCGGGEEEEEESGGGTTSSEEEEEEGG----GTEEEEEEECCSSS----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccCHHHceeeeEecCCCCeEEEEEEEcC----CCeEEEEEEecCcc----cchHHHHHHHHHHHhcCCCCEeeEEEE
Confidence            4567788899999999999999999999873    67899999997542    235678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+.+||||||+++|+|.+++.......+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+
T Consensus       285 ~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  364 (495)
T 1opk_A          285 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGL  364 (495)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTC
T ss_pred             EecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeeccc
Confidence            99999999999999999999999886667799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                     
T Consensus       365 a~~~~~~~~~~---------------------------------------------------------------------  375 (495)
T 1opk_A          365 SRLMTGDTYTA---------------------------------------------------------------------  375 (495)
T ss_dssp             EECCTTCCEEC---------------------------------------------------------------------
T ss_pred             ceeccCCceee---------------------------------------------------------------------
Confidence            87553211100                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....++..|+|||++.+..++.++|||||||++|||++ |..||.+......... +....+.+....++..+.+||.+
T Consensus       376 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~  454 (495)
T 1opk_A          376 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYEL-LEKDYRMERPEGCPEKVYELMRA  454 (495)
T ss_dssp             CTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH-HHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             cCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHH
Confidence            001236789999999998889999999999999999998 9999998776655544 44555666666799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||+.||++||+    +.+|++
T Consensus       455 cl~~dP~~RPs----~~el~~  471 (495)
T 1opk_A          455 CWQWNPSDRPS----FAEIHQ  471 (495)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HcCcChhHCcC----HHHHHH
Confidence            99999999999    777765

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=6.1e-46  Score=366.21  Aligned_cols=267  Identities=18%  Similarity=0.269  Sum_probs=219.8

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCc
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLP  149 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv  149 (457)
                      ...+.+..++|++.+.||+|+||+||+|++...+   ..++..||+|++....  .......+.+|+++++++ +||||+
T Consensus        27 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv  104 (334)
T 2pvf_A           27 DPKWEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNII  104 (334)
T ss_dssp             CTTTBCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CccccCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEe
Confidence            3556778899999999999999999999975322   2467789999997542  233456788899999999 899999


Q ss_pred             eEEEEEEcCCcEEEEEeecCCCChHHHHHhCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCC
Q 012762          150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPD--------------KRFHESAVRFYASEVVVALEFLHMMGIIYRDLK  215 (457)
Q Consensus       150 ~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~--------------~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIK  215 (457)
                      ++++++...+..|+||||+++++|.+++.....              ..+++..++.++.||+.||.|||++||+|||||
T Consensus       105 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk  184 (334)
T 2pvf_A          105 NLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLA  184 (334)
T ss_dssp             CEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS
T ss_pred             eEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCc
Confidence            999999999999999999999999999886531              348999999999999999999999999999999


Q ss_pred             CCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcc
Q 012762          216 PENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRK  295 (457)
Q Consensus       216 p~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (457)
                      |+|||++.++.+||+|||++..........                                                  
T Consensus       185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~--------------------------------------------------  214 (334)
T 2pvf_A          185 ARNVLVTENNVMKIADFGLARDINNIDYYK--------------------------------------------------  214 (334)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECTTTSSEE--------------------------------------------------
T ss_pred             cceEEEcCCCCEEEcccccccccccccccc--------------------------------------------------
Confidence            999999999999999999986543211100                                                  


Q ss_pred             ccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcc
Q 012762          296 KKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARA  374 (457)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~  374 (457)
                                        ......||+.|+|||++.+..++.++|||||||++|||++ |..||.+....+....+... 
T Consensus       215 ------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~-  275 (334)
T 2pvf_A          215 ------------------KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEG-  275 (334)
T ss_dssp             ------------------CCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHT-
T ss_pred             ------------------ccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcC-
Confidence                              0011247889999999998889999999999999999999 99999988776665555443 


Q ss_pred             cCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       375 ~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ...+....++.++.++|.+||..||.+||+    +.+++++
T Consensus       276 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~~  312 (334)
T 2pvf_A          276 HRMDKPANCTNELYMMMRDCWHAVPSQRPT----FKQLVED  312 (334)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            334444568999999999999999999999    8888765

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.9e-46  Score=369.35  Aligned_cols=266  Identities=21%  Similarity=0.287  Sum_probs=221.8

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCC-CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS-NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .+.+..++|++.+.||+|+||+||+|.+..... .....||+|++....  .......+.+|+++|+.+ +||||+++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~h~~iv~~~~  117 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA--HADEKEALMSELKIMSHLGQHENIVNLLG  117 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc--ChHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence            355677899999999999999999999864321 234589999997642  223456788899999999 8999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCC------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQP------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV  221 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll  221 (457)
                      ++...+..|+||||+++|+|.+++....            ...+++..++.++.||+.||.|||++||+||||||+|||+
T Consensus       118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~  197 (333)
T 2i1m_A          118 ACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLL  197 (333)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEE
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEE
Confidence            9999999999999999999999887531            3468999999999999999999999999999999999999


Q ss_pred             ccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCC
Q 012762          222 RSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNP  301 (457)
Q Consensus       222 ~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (457)
                      +.++.+||+|||++.........                                                         
T Consensus       198 ~~~~~~kl~Dfg~~~~~~~~~~~---------------------------------------------------------  220 (333)
T 2i1m_A          198 TNGHVAKIGDFGLARDIMNDSNY---------------------------------------------------------  220 (333)
T ss_dssp             EGGGEEEBCCCGGGCCGGGCTTS---------------------------------------------------------
T ss_pred             CCCCeEEECccccccccccccce---------------------------------------------------------
Confidence            99999999999998643211100                                                         


Q ss_pred             CCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCC
Q 012762          302 GTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKE  380 (457)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~  380 (457)
                                 .......||+.|+|||++.+..++.++|||||||++|||++ |..||.+.........++......+..
T Consensus       221 -----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~  289 (333)
T 2i1m_A          221 -----------IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQP  289 (333)
T ss_dssp             -----------EECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCCCCC
T ss_pred             -----------eecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCCCCC
Confidence                       00112347889999999999999999999999999999998 999999877666666676666666666


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ..++..+.+||.+||+.||.+||+    +.+|+++
T Consensus       290 ~~~~~~l~~li~~~l~~~p~~Rps----~~~l~~~  320 (333)
T 2i1m_A          290 AFAPKNIYSIMQACWALEPTHRPT----FQQICSF  320 (333)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCHHHHHHHHHHhccChhhCcC----HHHHHHH
Confidence            678999999999999999999999    8888763

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=5.4e-46  Score=360.65  Aligned_cols=264  Identities=21%  Similarity=0.263  Sum_probs=214.6

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+...+|++++.||+|+||+||+|++...+..+++.||+|++....  .......+.+|+++|+.++||||+++++++.
T Consensus        16 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   93 (302)
T 4e5w_A           16 THFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKEIEILRNLYHENIVKYKGICT   93 (302)
T ss_dssp             TBCCGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             hhhhhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc--cchhHHHHHHHHHHHHhCCCCCeeeeeeEEe
Confidence            34555679999999999999999999766566789999999997653  2334567888999999999999999999998


Q ss_pred             cC--CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          157 CP--RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       157 ~~--~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ..  ..+|+||||+++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        94 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  172 (302)
T 4e5w_A           94 EDGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGL  172 (302)
T ss_dssp             C---CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred             cCCCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccc
Confidence            76  67899999999999999986542 5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +...........                                                                   .
T Consensus       173 ~~~~~~~~~~~~-------------------------------------------------------------------~  185 (302)
T 4e5w_A          173 TKAIETDKEYYT-------------------------------------------------------------------V  185 (302)
T ss_dssp             CEECCTTCCEEE-------------------------------------------------------------------C
T ss_pred             cccccCCCccee-------------------------------------------------------------------c
Confidence            866543221100                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC--------------ChHHHHHHHHhcccCCCCC
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI--------------DHELTLANVVARALEFPKE  380 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~--------------~~~~~~~~~~~~~~~~~~~  380 (457)
                      .....||..|+|||++.+..++.++|||||||++|+|++|..|+...              .........+......+..
T Consensus       186 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (302)
T 4e5w_A          186 KDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCP  265 (302)
T ss_dssp             CCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCC
T ss_pred             cCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCC
Confidence            11235888999999999999999999999999999999999876322              2222333444445555666


Q ss_pred             CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       381 ~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..+++++.+||.+||..||.+||+    +.++++
T Consensus       266 ~~~~~~l~~li~~~l~~dp~~Rps----~~~ll~  295 (302)
T 4e5w_A          266 PNCPDEVYQLMRKCWEFQPSNRTS----FQNLIE  295 (302)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCC----HHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCCC----HHHHHH
Confidence            678999999999999999999999    888875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.4e-46  Score=386.45  Aligned_cols=256  Identities=20%  Similarity=0.320  Sum_probs=217.7

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.++||+|+||+||+|.++     .+..||||+++...    .....+.+|+++|+.++||||++++++
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~l~~~  251 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYN-----KHTKVAVKTMKPGS----MSVEAFLAEANVMKTLQHDKLVKLHAV  251 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEET-----TTEEEEEEEECTTS----BCHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEEC-----CccEEEEEEecCCC----ccHHHHHHHHHHHhhCCCCCEeeEEEE
Confidence            456778889999999999999999999875     56789999997643    245678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +. .+..||||||+.+|+|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       252 ~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~  330 (454)
T 1qcf_A          252 VT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGL  330 (454)
T ss_dssp             EC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTG
T ss_pred             Ee-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCC
Confidence            86 56789999999999999998764334689999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                     
T Consensus       331 a~~~~~~~~~~---------------------------------------------------------------------  341 (454)
T 1qcf_A          331 ARVIEDNEYTA---------------------------------------------------------------------  341 (454)
T ss_dssp             GGGBCCHHHHT---------------------------------------------------------------------
T ss_pred             ceEcCCCceec---------------------------------------------------------------------
Confidence            86543211000                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....+|..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+. ...+.+.+..+++++.+||.+
T Consensus       342 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~  420 (454)
T 1qcf_A          342 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE-RGYRMPRPENCPEELYNIMMR  420 (454)
T ss_dssp             TCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH-HTCCCCCCTTSCHHHHHHHHH
T ss_pred             cCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            001236889999999998899999999999999999999 999999988776666554 445666667799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||++||+    +.+|++
T Consensus       421 cl~~dp~~RPt----~~~i~~  437 (454)
T 1qcf_A          421 CWKNRPEERPT----FEYIQS  437 (454)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HccCChhHCcC----HHHHHH
Confidence            99999999999    777754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.4e-46  Score=360.56  Aligned_cols=272  Identities=25%  Similarity=0.375  Sum_probs=207.8

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----  157 (457)
                      ++|++++.||+|+||+||+|++.    .+++.||||++...    ......+.+|+++++.++||||+++++++..    
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   77 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNA----LDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNF   77 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEEE----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCC
T ss_pred             ccchhhheeccCCcEEEEEEEEc----CCCeEEEEEEEecc----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcch
Confidence            47999999999999999999976    47889999999653    2345677889999999999999999998854    


Q ss_pred             ---------CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          158 ---------PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       158 ---------~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                               .+..|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+|
T Consensus        78 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~k  156 (303)
T 1zy4_A           78 VKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVK  156 (303)
T ss_dssp             CC------CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEE
T ss_pred             hhhhcccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEE
Confidence                     35689999999999999999864 35688899999999999999999999999999999999999999999


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||++.................                                                        
T Consensus       157 l~dfg~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  180 (303)
T 1zy4_A          157 IGDFGLAKNVHRSLDILKLDSQNL--------------------------------------------------------  180 (303)
T ss_dssp             ECCCCCCSCTTC--------------------------------------------------------------------
T ss_pred             EeeCcchhhcccccchhccccccc--------------------------------------------------------
Confidence            999999876543211100000000                                                        


Q ss_pred             cCCccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhcccCCCC--CCCCC
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARALEFPK--EPSVP  384 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~~~--~~~~~  384 (457)
                      ...........||+.|+|||++.+. .++.++|||||||++|+|++   ||..... ......+......++.  ....+
T Consensus       181 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (303)
T 1zy4_A          181 PGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKM  257 (303)
T ss_dssp             -------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTS
T ss_pred             cccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccch
Confidence            0000111234699999999999875 58999999999999999998   5553322 2334444433333332  23466


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchh
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWAL  425 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~  425 (457)
                      ..+.++|.+||..||.+||+    +.++++||||+...+..
T Consensus       258 ~~~~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~~~~~  294 (303)
T 1zy4_A          258 KVEKKIIRLLIDHDPNKRPG----ARTLLNSGWLPVKHQDE  294 (303)
T ss_dssp             HHHHHHHHHHTCSSGGGSCC----HHHHHHSSCSCCCCHHH
T ss_pred             HHHHHHHHHHHhcCcccCcC----HHHHhCCCCcCCCChHH
Confidence            77999999999999999999    99999999999877653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=9e-47  Score=370.13  Aligned_cols=257  Identities=24%  Similarity=0.346  Sum_probs=214.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcC--CCCCceEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLD--HPFLPTLY  152 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~--H~nIv~l~  152 (457)
                      ....++|++.+.||+|+||+||+|.+.    .+++.||||++........   .....+.+|+++++++.  |+||++++
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~  114 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRV----SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL  114 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEET----TTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEEC----CCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEE
Confidence            345678999999999999999999876    4789999999977643221   12244567999999996  59999999


Q ss_pred             EEEEcCCcEEEEEeecCC-CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc-cCCCEEEe
Q 012762          153 ATLDCPRWSCLLTEFCPG-GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR-SDGHIMLT  230 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~~~~-~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~-~~~~vkl~  230 (457)
                      +++...+..++|||++.+ ++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+
T Consensus       115 ~~~~~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~  192 (320)
T 3a99_A          115 DWFERPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLI  192 (320)
T ss_dssp             EEEECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEEC
T ss_pred             EEEecCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEe
Confidence            999999999999999976 8999988774  6799999999999999999999999999999999999999 67899999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++.......                                                                    
T Consensus       193 Dfg~~~~~~~~~--------------------------------------------------------------------  204 (320)
T 3a99_A          193 DFGSGALLKDTV--------------------------------------------------------------------  204 (320)
T ss_dssp             CCTTCEECCSSC--------------------------------------------------------------------
T ss_pred             eCcccccccccc--------------------------------------------------------------------
Confidence            999976543211                                                                    


Q ss_pred             CccccccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                          .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||....      .+......++  ..++.++.+
T Consensus       205 ----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~--~~~~~~~~~  272 (320)
T 3a99_A          205 ----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFR--QRVSSECQH  272 (320)
T ss_dssp             ----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCS--SCCCHHHHH
T ss_pred             ----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------hhhccccccc--ccCCHHHHH
Confidence                012359999999999987775 788999999999999999999997532      2233333333  458999999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      ||.+||..||++||+    +.+|++||||+.+.+.
T Consensus       273 li~~~l~~dp~~Rps----~~~ll~hp~~~~~~~~  303 (320)
T 3a99_A          273 LIRWCLALRPSDRPT----FEEIQNHPWMQDVLLP  303 (320)
T ss_dssp             HHHHHTCSSGGGSCC----HHHHHTSGGGSSCCCH
T ss_pred             HHHHHccCChhhCcC----HHHHhcCHhhcCccCc
Confidence            999999999999999    9999999999987664

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=8.9e-46  Score=356.66  Aligned_cols=253  Identities=21%  Similarity=0.337  Sum_probs=208.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhH----HHHHHHHHHHHHHcCCCCCceEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK----ESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~----~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      .+..++|++.+.||+|+||+||+|+++    .+++.||+|++..........    ...+.+|+++++.++||||+++++
T Consensus        15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~   90 (287)
T 4f0f_A           15 TLADNEIEYEKQIGKGGFGLVHKGRLV----KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYG   90 (287)
T ss_dssp             BCCSTTEEEEEECCCCSSSCEEEEEET----TTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             hhhhccceehhccccCCceeEEEEEEc----CCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhhe
Confidence            355678999999999999999999986    478899999986543322211    167888999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCCC-----
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDGH-----  226 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~~-----  226 (457)
                      ++.+..  ++||||+++++|.+++... ...+++..++.++.||+.||.|||+.|  |+||||||+|||++.++.     
T Consensus        91 ~~~~~~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~  167 (287)
T 4f0f_A           91 LMHNPP--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVC  167 (287)
T ss_dssp             EETTTT--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCC
T ss_pred             eecCCC--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCcee
Confidence            997655  6999999999998877654 357999999999999999999999999  999999999999988776     


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      +||+|||+++.....                                                                 
T Consensus       168 ~kl~Dfg~~~~~~~~-----------------------------------------------------------------  182 (287)
T 4f0f_A          168 AKVADFGLSQQSVHS-----------------------------------------------------------------  182 (287)
T ss_dssp             EEECCCTTCBCCSSC-----------------------------------------------------------------
T ss_pred             EEeCCCCcccccccc-----------------------------------------------------------------
Confidence            999999997533211                                                                 


Q ss_pred             cccCCccccccccCCCCccCchhhc--CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHH--HHHHHhcccCCCCCCC
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIIS--GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT--LANVVARALEFPKEPS  382 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~--~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~  382 (457)
                              .....||+.|+|||++.  +..++.++|||||||++|+|++|+.||........  ...+............
T Consensus       183 --------~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
T 4f0f_A          183 --------VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPED  254 (287)
T ss_dssp             --------EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTT
T ss_pred             --------ccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCcc
Confidence                    11246999999999994  44578999999999999999999999987654333  4444455555555567


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +++++.+||.+||+.||++||+    +.++++
T Consensus       255 ~~~~l~~li~~~l~~dp~~Rps----~~~ll~  282 (287)
T 4f0f_A          255 CPPRLRNVIELCWSGDPKKRPH----FSYIVK  282 (287)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             cCHHHHHHHHHHhcCChhhCcC----HHHHHH
Confidence            8999999999999999999999    888875

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1e-45  Score=360.37  Aligned_cols=259  Identities=24%  Similarity=0.345  Sum_probs=205.3

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ...++|++.+.||+|+||.||+|.+.    .+|+.||+|++.............+.+|+++++.++||||+++++++...
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~  104 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACL----LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED  104 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEET----TTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             ccccceEEEEeecCCCCceEEEEEEc----CCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC
Confidence            45578999999999999999999976    37889999999865444445667788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      +..++||||+++++|.+++...  ....+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.
T Consensus       105 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~  184 (310)
T 2wqm_A          105 NELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGR  184 (310)
T ss_dssp             TEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred             CcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence            9999999999999999888652  24668999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .......                                                                      ...
T Consensus       185 ~~~~~~~----------------------------------------------------------------------~~~  194 (310)
T 2wqm_A          185 FFSSKTT----------------------------------------------------------------------AAH  194 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCc----------------------------------------------------------------------ccc
Confidence            4432110                                                                      011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh--HHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH--ELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||.+...  ......+............++.++.+||.+|
T Consensus       195 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  274 (310)
T 2wqm_A          195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMC  274 (310)
T ss_dssp             ----CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHH
T ss_pred             ccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHHHHHHHHHH
Confidence            23589999999999999999999999999999999999999976532  2333334333333333356889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |..||.+||+    +.+++++
T Consensus       275 l~~dp~~Rps----~~~il~~  291 (310)
T 2wqm_A          275 INPDPEKRPD----VTYVYDV  291 (310)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             cCCChhhCCC----HHHHHHH
Confidence            9999999999    8888764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.9e-46  Score=354.31  Aligned_cols=256  Identities=23%  Similarity=0.312  Sum_probs=216.9

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .+.+..++|++.+.||+|+||+||+|.+.     ++..||+|++.....    ....+.+|+++++.++||||+++++++
T Consensus         2 ~~~i~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vaiK~~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~   72 (267)
T 3t9t_A            2 KWVIDPSELTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIREGAM----SEEDFIEEAEVMMKLSHPKLVQLYGVC   72 (267)
T ss_dssp             -CBCCGGGEEEEEEEEEETTEEEEEEEET-----TTEEEEEEEECTTTB----CHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ceEEchhheeeeeEecCCCceeEEEEEec-----CCCeEEEEEccccCC----CHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            35677789999999999999999999875     567899999976532    335678899999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ...+..|+||||+++++|.+++... ...+++..+..++.||+.||.|||++||+||||||+||+++.++.+||+|||++
T Consensus        73 ~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~  151 (267)
T 3t9t_A           73 LEQAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT  151 (267)
T ss_dssp             CSSSSCEEEECCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGG
T ss_pred             ccCCCeEEEEeCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccc
Confidence            9999999999999999999998764 356899999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      .........                                                                     ..
T Consensus       152 ~~~~~~~~~---------------------------------------------------------------------~~  162 (267)
T 3t9t_A          152 RFVLDDQYT---------------------------------------------------------------------SS  162 (267)
T ss_dssp             GGBCCHHHH---------------------------------------------------------------------ST
T ss_pred             ccccccccc---------------------------------------------------------------------cc
Confidence            644321100                                                                     00


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....|+..|+|||++.+..++.++|||||||++|+|++ |..||...........+... ........++..+.+++.+|
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~~  241 (267)
T 3t9t_A          163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG-FRLYKPRLASTHVYQIMNHC  241 (267)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT-CCCCCCTTSCHHHHHHHHHH
T ss_pred             ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcC-CcCCCCccCcHHHHHHHHHH
Confidence            12247889999999998899999999999999999999 99999988777666665544 33334456889999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |..||++||+    +.+++++
T Consensus       242 l~~~p~~Rps----~~~ll~~  258 (267)
T 3t9t_A          242 WRERPEDRPA----FSRLLRQ  258 (267)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             ccCChhhCcC----HHHHHHH
Confidence            9999999999    8888764

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.2e-46  Score=369.50  Aligned_cols=256  Identities=21%  Similarity=0.255  Sum_probs=201.6

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ..+..+..++|++.++||+|+||+||+|++      .++.||||++....    ........|+.+|+.++||||+++++
T Consensus        16 ~~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~------~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~   85 (322)
T 3soc_A           16 TENLYFQSMPLQLLEVKARGRFGCVWKAQL------LNEYVAVKIFPIQD----KQSWQNEYEVYSLPGMKHENILQFIG   85 (322)
T ss_dssp             CCCEEETTEEEEEEEEEECSTTCEEEEEEE------TTEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEE
T ss_pred             ccccccchhhchhhheecccCceEEEEEEE------CCCEEEEEEeecCc----hHHHHHHHHHHHHhcCCCCCchhhcc
Confidence            355668888999999999999999999986      36899999997543    23344556888899999999999999


Q ss_pred             EEEcCC----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc----------CceeecCCCCCe
Q 012762          154 TLDCPR----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM----------GIIYRDLKPENV  219 (457)
Q Consensus       154 ~~~~~~----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~----------~iiHrDIKp~NI  219 (457)
                      ++....    .+|+||||+++|+|.++++.   ..+++..++.++.||+.||.|||+.          ||+||||||+||
T Consensus        86 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Ni  162 (322)
T 3soc_A           86 AEKRGTSVDVDLWLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNV  162 (322)
T ss_dssp             EEEEECSSSEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGE
T ss_pred             eeccCCCCCceEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhE
Confidence            998754    36999999999999999987   4599999999999999999999999          999999999999


Q ss_pred             EEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          220 LVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       220 ll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                      |++.++.+||+|||+++........                                                       
T Consensus       163 ll~~~~~~kL~DFg~a~~~~~~~~~-------------------------------------------------------  187 (322)
T 3soc_A          163 LLKNNLTACIADFGLALKFEAGKSA-------------------------------------------------------  187 (322)
T ss_dssp             EECTTCCEEECCCTTCEEECTTSCC-------------------------------------------------------
T ss_pred             EECCCCeEEEccCCcccccccccCc-------------------------------------------------------
Confidence            9999999999999998654321110                                                       


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCC-----CCCccchhhhhhHHHHHHhcCCCCCCCCCh-----------
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE-----GHGNAVDWWTLGIFIFELFYGTTPFKGIDH-----------  363 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~-----~~~~~sDiwSlG~il~elltG~~Pf~~~~~-----------  363 (457)
                                   ......+||+.|+|||++.+.     .++.++|||||||++|||++|+.||.+...           
T Consensus       188 -------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~  254 (322)
T 3soc_A          188 -------------GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG  254 (322)
T ss_dssp             -------------CCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred             -------------cccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence                         001124699999999999874     356789999999999999999999976432           


Q ss_pred             -----HHHHHHHHhcccCCCCCC-----CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          364 -----ELTLANVVARALEFPKEP-----SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       364 -----~~~~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                           ......+...........     ..+.++.+||.+||+.||++||+    +.+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~ell~  311 (322)
T 3soc_A          255 QHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLS----AGCVGE  311 (322)
T ss_dssp             SSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             cCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcC----HHHHHH
Confidence                 111222222221111111     11234999999999999999999    888875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=9.8e-46  Score=360.87  Aligned_cols=255  Identities=23%  Similarity=0.323  Sum_probs=204.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|++.    .+++.||+|++.............+.+|+++++.++||||+++++++..++
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~  107 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDT----VRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDG  107 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEET----TTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETT
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEc----CCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCC
Confidence            4578999999999999999999976    478899999998765544455677889999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~  185 (309)
T 2h34_A          108 QLYVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATT  185 (309)
T ss_dssp             EEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred             eEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence            999999999999999998875  569999999999999999999999999999999999999999999999999975443


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                     ......
T Consensus       186 ~~~~~---------------------------------------------------------------------~~~~~~  196 (309)
T 2h34_A          186 DEKLT---------------------------------------------------------------------QLGNTV  196 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------cccccC
Confidence            21100                                                                     011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHHHhhh
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~L~~  397 (457)
                      ||+.|+|||++.+..++.++|||||||++|+|++|+.||.+..... +...+......+  ....++.++.++|.+||..
T Consensus       197 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  275 (309)
T 2h34_A          197 GTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSV-MGAHINQAIPRPSTVRPGIPVAFDAVIARGMAK  275 (309)
T ss_dssp             CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHH-HHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCS
T ss_pred             CCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHH-HHHHhccCCCCccccCCCCCHHHHHHHHHhccC
Confidence            8999999999999899999999999999999999999998865543 333333332222  2346889999999999999


Q ss_pred             CCCCCC-CCCcChHHHhc
Q 012762          398 DPTRRM-GSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rp-s~~~~~~~ll~  414 (457)
                      ||++|| +    ++++++
T Consensus       276 dP~~Rp~s----~~~l~~  289 (309)
T 2h34_A          276 NPEDRYVT----CGDLSA  289 (309)
T ss_dssp             SGGGSCSS----HHHHHH
T ss_pred             CHHHHHHh----HHHHHH
Confidence            999999 6    666654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=5.6e-46  Score=362.87  Aligned_cols=263  Identities=23%  Similarity=0.342  Sum_probs=212.7

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--CCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~~  154 (457)
                      ..+..++|++++.||+|+||+||+|.+.     +++.||+|++..... .......+.+|+++++.++  |+||++++++
T Consensus        23 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~   96 (313)
T 3cek_A           23 MSVKGRIYSILKQIGSGGSSKVFQVLNE-----KKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDY   96 (313)
T ss_dssp             EEETTEEEEEEEEEECCSSEEEEEEECT-----TCCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEE
T ss_pred             eeeccceEEEEEEecCCCCEEEEEEEcC-----CCcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEEEE
Confidence            3445568999999999999999999864     578899999975432 2334567888999999997  5999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..|+|||+ .+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+
T Consensus        97 ~~~~~~~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~  172 (313)
T 3cek_A           97 EITDQYIYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGI  172 (313)
T ss_dssp             EECSSEEEEEECC-CSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSS
T ss_pred             eecCCEEEEEEec-CCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccc
Confidence            9999999999995 589999998875  5789999999999999999999999999999999999995 58999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +..........                                                                    .
T Consensus       173 ~~~~~~~~~~~--------------------------------------------------------------------~  184 (313)
T 3cek_A          173 ANQMQPDTTSV--------------------------------------------------------------------V  184 (313)
T ss_dssp             SCC-----------------------------------------------------------------------------
T ss_pred             cccccCccccc--------------------------------------------------------------------c
Confidence            86543211100                                                                    0


Q ss_pred             cccccCCCCccCchhhcC-----------CCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCC
Q 012762          315 SMSFVGTHEYLAPEIISG-----------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPS  382 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~-----------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~  382 (457)
                      .....||+.|+|||++.+           ..++.++|||||||++|+|++|..||...... .....++...........
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (313)
T 3cek_A          185 KDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDI  264 (313)
T ss_dssp             -----CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCC
T ss_pred             ccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCccc
Confidence            112359999999999976           46888999999999999999999999876443 344444544444444455


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .+.++.++|.+||..||.+||+    +.|+++||||+..
T Consensus       265 ~~~~l~~li~~~l~~dp~~Rps----~~ell~h~~~~~~  299 (313)
T 3cek_A          265 PEKDLQDVLKCCLKRDPKQRIS----IPELLAHPYVQIQ  299 (313)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHCC
T ss_pred             chHHHHHHHHHHccCCcccCcC----HHHHhcCccccCC
Confidence            7889999999999999999999    9999999999853

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3.2e-46  Score=360.13  Aligned_cols=264  Identities=22%  Similarity=0.330  Sum_probs=212.5

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.+.||+|+||+||+|.+.... ..+..||+|++.............+.+|+++++.++||||+++++++..
T Consensus        14 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~   92 (291)
T 1u46_A           14 LIGEKDLRLLEKLGDGSFGVVRRGEWDAPS-GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT   92 (291)
T ss_dssp             ECCGGGEEEEEECC----CCCEEEEEECTT-SCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccchhHeeeeeeecCCCceeEEEEEeccCC-CceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc
Confidence            455678999999999999999999875321 2344799999987654445566788899999999999999999999987


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +. .++||||+.+++|.+++... ...+++..+..++.||+.||.|||++||+|+||||+|||++.++.+||+|||++..
T Consensus        93 ~~-~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           93 PP-MKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA  170 (291)
T ss_dssp             SS-CEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             CC-ceeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEcccccccc
Confidence            65 88999999999999888764 25689999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .........                                                                   ....
T Consensus       171 ~~~~~~~~~-------------------------------------------------------------------~~~~  183 (291)
T 1u46_A          171 LPQNDDHYV-------------------------------------------------------------------MQEH  183 (291)
T ss_dssp             CCC-CCEEE-------------------------------------------------------------------C---
T ss_pred             ccccccchh-------------------------------------------------------------------hhcc
Confidence            532211100                                                                   0012


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..||..|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+.......+....++.++.++|.+||.
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  263 (291)
T 1u46_A          184 RKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWA  263 (291)
T ss_dssp             --CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             CCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHcc
Confidence            347889999999998889999999999999999999 9999999888888887777766677777899999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcC
Q 012762          397 KDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~h  415 (457)
                      .||++||+    +.+++++
T Consensus       264 ~~p~~Rps----~~~l~~~  278 (291)
T 1u46_A          264 HKPEDRPT----FVALRDF  278 (291)
T ss_dssp             SSGGGSCC----HHHHHHH
T ss_pred             CCcccCcC----HHHHHHH
Confidence            99999999    8988874

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3.8e-46  Score=366.49  Aligned_cols=273  Identities=22%  Similarity=0.337  Sum_probs=218.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++++.||+|+||+||+|+++..+..+++.||+|++....   ......+.+|+++|++++|+||+++++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   93 (327)
T 3lxl_A           17 PTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVS   93 (327)
T ss_dssp             CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence            445677899999999999999999999766566789999999997542   23456688899999999999999999988


Q ss_pred             E--cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          156 D--CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       156 ~--~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      .  ..+..|+||||+++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        94 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg  172 (327)
T 3lxl_A           94 YGPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFG  172 (327)
T ss_dssp             ECSSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGG
T ss_pred             ecCCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccc
Confidence            6  4567899999999999999987642 469999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++...........                                                                   
T Consensus       173 ~~~~~~~~~~~~~-------------------------------------------------------------------  185 (327)
T 3lxl_A          173 LAKLLPLDKDYYV-------------------------------------------------------------------  185 (327)
T ss_dssp             GCEECCTTCSEEE-------------------------------------------------------------------
T ss_pred             cceecccCCccce-------------------------------------------------------------------
Confidence            9865532211100                                                                   


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--------------HHHHHHHhcccCCCC
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--------------LTLANVVARALEFPK  379 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--------------~~~~~~~~~~~~~~~  379 (457)
                      ......||..|+|||++.+..++.++|||||||++|+|++|..||......              ......+......+.
T Consensus       186 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (327)
T 3lxl_A          186 VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPA  265 (327)
T ss_dssp             CSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCC
T ss_pred             eeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCC
Confidence            011235889999999999998999999999999999999999998653321              223334444555566


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc---CCCCCCCCc
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR---HQFFNGVNW  423 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~---hp~f~~~~~  423 (457)
                      ...+++++.+||.+||..||++||+    +.+|++   ..|.....|
T Consensus       266 ~~~~~~~l~~li~~~l~~dP~~Rps----~~ell~~L~~~~~~~~~~  308 (327)
T 3lxl_A          266 PPACPAEVHELMKLCWAPSPQDRPS----FSALGPQLDMLWSGSRGC  308 (327)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHHHHHC-------
T ss_pred             CCcccHHHHHHHHHHcCCChhhCcC----HHHHHHHHHHHHhhhcCc
Confidence            6679999999999999999999999    888854   344444333

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.6e-45  Score=353.89  Aligned_cols=261  Identities=21%  Similarity=0.304  Sum_probs=215.1

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ...+..++|++.+.||+|+||+||+|.+.... ..+..||+|++.+..  .......+.+|+++++.++||||+++++++
T Consensus         6 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   82 (281)
T 3cc6_A            6 QYGIAREDVVLNRILGEGFFGEVYEGVYTNHK-GEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGII   82 (281)
T ss_dssp             CCSCCGGGEEEEEEEEECSSSEEEEEEEECTT-CCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEE
T ss_pred             cceecccceEEEEEEEecCCeeEEEeEEcCCC-CCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEE
Confidence            45667789999999999999999999876422 245679999997642  233456788899999999999999999998


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      ..+ ..|+||||+++++|.+++... ...+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||++
T Consensus        83 ~~~-~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  160 (281)
T 3cc6_A           83 EEE-PTWIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLS  160 (281)
T ss_dssp             CSS-SCEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGG
T ss_pred             cCC-CCEEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCC
Confidence            754 568999999999999998764 256899999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      .........                                                                     ..
T Consensus       161 ~~~~~~~~~---------------------------------------------------------------------~~  171 (281)
T 3cc6_A          161 RYIEDEDYY---------------------------------------------------------------------KA  171 (281)
T ss_dssp             GCC-----------------------------------------------------------------------------
T ss_pred             ccccccccc---------------------------------------------------------------------cc
Confidence            654321110                                                                     00


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |+.||...........+... ...+....+++.+.++|.+|
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~  250 (281)
T 3cc6_A          172 SVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKG-DRLPKPDLCPPVLYTLMTRC  250 (281)
T ss_dssp             -CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHT-CCCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHH
Confidence            11247889999999998999999999999999999998 99999887766655554433 34455556899999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |..||++||+    +.+++++
T Consensus       251 l~~~p~~Rps----~~ell~~  267 (281)
T 3cc6_A          251 WDYDPSDRPR----FTELVCS  267 (281)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             ccCCchhCcC----HHHHHHH
Confidence            9999999999    8888765

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=8.4e-46  Score=362.82  Aligned_cols=260  Identities=20%  Similarity=0.280  Sum_probs=213.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +....|+++++||+|+||+||+|.++..+..+++.||||++...  ........+.+|+++|+.++||||+++++++...
T Consensus        28 ~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  105 (318)
T 3lxp_A           28 FHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD--AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA  105 (318)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             ecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc--cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC
Confidence            33334599999999999999999887777778999999999764  2234456788899999999999999999999874


Q ss_pred             --CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          159 --RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       159 --~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                        ..+|+||||+++++|.+++..   ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~---~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          106 GAASLQLVMEYVPLGSLRDYLPR---HSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             TTTEEEEEECCCTTCBHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             CCceEEEEEecccCCcHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccc
Confidence              578999999999999999876   459999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ..........                                                                   ...
T Consensus       183 ~~~~~~~~~~-------------------------------------------------------------------~~~  195 (318)
T 3lxp_A          183 AVPEGHEYYR-------------------------------------------------------------------VRE  195 (318)
T ss_dssp             ECCTTCSEEE-------------------------------------------------------------------C--
T ss_pred             cccccccccc-------------------------------------------------------------------ccc
Confidence            5542211100                                                                   011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH--------------HHHHHHHhcccCCCCCCC
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE--------------LTLANVVARALEFPKEPS  382 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~--------------~~~~~~~~~~~~~~~~~~  382 (457)
                      ...||..|+|||++.+..++.++|||||||++|+|++|..||......              ......+......+....
T Consensus       196 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (318)
T 3lxp_A          196 DGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDK  275 (318)
T ss_dssp             -CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred             CCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCcc
Confidence            235888999999999988999999999999999999999999753221              123334444555566667


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++.++.+||.+||..||++||+    +.+|++
T Consensus       276 ~~~~l~~li~~~l~~dP~~Rps----~~ell~  303 (318)
T 3lxp_A          276 CPAEVYHLMKNCWETEASFRPT----FENLIP  303 (318)
T ss_dssp             CCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCcC----HHHHHH
Confidence            8999999999999999999999    888875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-46  Score=365.60  Aligned_cols=254  Identities=24%  Similarity=0.364  Sum_probs=202.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHc----CCCCCceEE
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEML----DHPFLPTLY  152 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l----~H~nIv~l~  152 (457)
                      -.++|++.+.||+|+||+||+|+++    .+++.||||++........   .....+.+|+++++++    +|+||++++
T Consensus        29 ~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           29 FEAEYRLGPLLGKGGFGTVFAGHRL----TDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             ----CEEEEEEEEETTEEEEEEECT----TTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             hhhceEEeeEEEcCCCEEEEEEEEc----cCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            3468999999999999999999876    4788999999976543221   1223455689999998    899999999


Q ss_pred             EEEEcCCcEEEEEee-cCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc-cCCCEEEe
Q 012762          153 ATLDCPRWSCLLTEF-CPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR-SDGHIMLT  230 (457)
Q Consensus       153 ~~~~~~~~~~lV~E~-~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~-~~~~vkl~  230 (457)
                      +++...+..++|||+ +.+++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~  182 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLI  182 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEEC
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEE
Confidence            999999999999999 7899999998875  5699999999999999999999999999999999999999 78999999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++.......                                                                    
T Consensus       183 dfg~~~~~~~~~--------------------------------------------------------------------  194 (312)
T 2iwi_A          183 DFGSGALLHDEP--------------------------------------------------------------------  194 (312)
T ss_dssp             CCSSCEECCSSC--------------------------------------------------------------------
T ss_pred             EcchhhhcccCc--------------------------------------------------------------------
Confidence            999976543211                                                                    


Q ss_pred             CccccccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHH
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD  389 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (457)
                          .....||..|+|||++.+..+ +.++|||||||++|+|++|+.||....      .+......++  ..++.++.+
T Consensus       195 ----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~--~~~~~~~~~  262 (312)
T 2iwi_A          195 ----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EILEAELHFP--AHVSPDCCA  262 (312)
T ss_dssp             ----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHTCCCCC--TTSCHHHHH
T ss_pred             ----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HHhhhccCCc--ccCCHHHHH
Confidence                012358999999999987766 458999999999999999999997532      2333444444  458899999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      ||.+||..||++||+    +.|+++||||+....
T Consensus       263 li~~~l~~~p~~Rps----~~e~l~~~~~~~~~~  292 (312)
T 2iwi_A          263 LIRRCLAPKPSSRPS----LEEILLDPWMQTPAE  292 (312)
T ss_dssp             HHHHHTCSSTTTSCC----HHHHHHSTTTCC---
T ss_pred             HHHHHccCChhhCcC----HHHHhcChhhcCchh
Confidence            999999999999999    999999999997544

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=5.6e-46  Score=381.68  Aligned_cols=256  Identities=23%  Similarity=0.327  Sum_probs=214.5

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.++||+|+||+||+|.++     .+..||||+++....    ..+.+.+|+++|++++||||++++++
T Consensus       177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~-----~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~  247 (452)
T 1fmk_A          177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWN-----GTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAV  247 (452)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSCEEEEEEET-----TTEEEEEEECCTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccChhHceeeeeecCCCCeEEEEEEEC-----CCceEEEEEeccCCC----CHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            456778889999999999999999999975     456799999976432    34568889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.. +..||||||+++|+|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       248 ~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~  326 (452)
T 1fmk_A          248 VSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGL  326 (452)
T ss_dssp             ECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCT
T ss_pred             EcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCcc
Confidence            876 6789999999999999998764445699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                     
T Consensus       327 a~~~~~~~~~~---------------------------------------------------------------------  337 (452)
T 1fmk_A          327 ARLIEDNEYTA---------------------------------------------------------------------  337 (452)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             ceecCCCceec---------------------------------------------------------------------
Confidence            86543211000                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....++..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+. ...+.+....++..+.+||.+
T Consensus       338 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~  416 (452)
T 1fmk_A          338 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVE-RGYRMPCPPECPESLHDLMCQ  416 (452)
T ss_dssp             -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTSCHHHHHHHHH
T ss_pred             ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            001247889999999999899999999999999999999 999999988776666554 445566666799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||++||+    +++|++
T Consensus       417 cl~~dP~~Rpt----~~~l~~  433 (452)
T 1fmk_A          417 CWRKEPEERPT----FEYLQA  433 (452)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HccCChhhCcC----HHHHHH
Confidence            99999999999    888765

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=363.11  Aligned_cols=261  Identities=19%  Similarity=0.253  Sum_probs=209.5

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|+++++||+|+||+||+|++..........||+|.+...  ........+.+|+++|+.++||||+++++++..
T Consensus        11 ~l~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~--~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   88 (327)
T 3lzb_A           11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLT   88 (327)
T ss_dssp             ECCTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC--SSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES
T ss_pred             ccCHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc--cCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec
Confidence            456689999999999999999999987533323334577776432  223456778889999999999999999999987


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +. .++||||+.+++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus        89 ~~-~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           89 ST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             SS-EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC---
T ss_pred             CC-ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeE
Confidence            65 78999999999999988775 35699999999999999999999999999999999999999999999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                    ....
T Consensus       167 ~~~~~~~~--------------------------------------------------------------------~~~~  178 (327)
T 3lzb_A          167 LGAEEKEY--------------------------------------------------------------------HAEG  178 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCccccc--------------------------------------------------------------------cccC
Confidence            53211100                                                                    0011


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..||+.|+|||++.+..++.++|||||||++|||++ |..||.+......... +......+....++.++.+||.+||.
T Consensus       179 ~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~li~~~l~  257 (327)
T 3lzb_A          179 GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSI-LEKGERLPQPPICTIDVYMIMRKCWM  257 (327)
T ss_dssp             -CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHH-HHTTCCCCCCTTBCHHHHHHHHHHTC
T ss_pred             CCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHcCCCCCCCccCCHHHHHHHHHHcC
Confidence            247889999999999999999999999999999999 9999998776655444 44444556666789999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcC
Q 012762          397 KDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~h  415 (457)
                      .||.+||+    +.||++.
T Consensus       258 ~dp~~Rps----~~ell~~  272 (327)
T 3lzb_A          258 IDADSRPK----FRELIIE  272 (327)
T ss_dssp             SSGGGSCC----HHHHHHH
T ss_pred             CChhHCcC----HHHHHHH
Confidence            99999999    8888763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-45  Score=355.13  Aligned_cols=262  Identities=21%  Similarity=0.282  Sum_probs=216.0

Q ss_pred             CCCccCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ...+..++|.+.+ .||+|+||+||+|.++..  ..+..||+|++....  .......+.+|+++++.++||||++++++
T Consensus         3 ~~~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   78 (287)
T 1u59_A            3 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMR--KKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGV   78 (287)
T ss_dssp             CCBCCGGGEEEEEEEEECCTTEEEEEEEEC-----CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccccHHHhhhhhccccccCceeEEEeEeccC--CCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEE
Confidence            3456677899987 999999999999986532  367889999997642  23456678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +. .+..|+||||+++++|.+++... ...+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||+
T Consensus        79 ~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~  156 (287)
T 1u59_A           79 CQ-AEALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGL  156 (287)
T ss_dssp             EE-SSSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTT
T ss_pred             ec-CCCcEEEEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccc
Confidence            94 56789999999999999988653 35699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +...........                                                                   .
T Consensus       157 ~~~~~~~~~~~~-------------------------------------------------------------------~  169 (287)
T 1u59_A          157 SKALGADDSYYT-------------------------------------------------------------------A  169 (287)
T ss_dssp             CEECTTCSCEEC-------------------------------------------------------------------C
T ss_pred             eeeeccCcceee-------------------------------------------------------------------c
Confidence            865532211000                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|||++ |+.||...........+... ...+....+++++.++|.+
T Consensus       170 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~li~~  248 (287)
T 1u59_A          170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG-KRMECPPECPPELYALMSD  248 (287)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTT-CCCCCCTTCCHHHHHHHHH
T ss_pred             cccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcC-CcCCCCCCcCHHHHHHHHH
Confidence            011247899999999998889999999999999999998 99999987776666555443 2334445689999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||..||++||+    +.++++|
T Consensus       249 ~l~~~p~~Rps----~~~l~~~  266 (287)
T 1u59_A          249 CWIYKWEDRPD----FLTVEQR  266 (287)
T ss_dssp             TTCSSGGGSCC----HHHHHHH
T ss_pred             HcCCChhhCcC----HHHHHHH
Confidence            99999999999    9999876

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.6e-46  Score=368.94  Aligned_cols=267  Identities=24%  Similarity=0.332  Sum_probs=194.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH-HHHHcCCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE-ILEMLDHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~-il~~l~H~nIv~l~~  153 (457)
                      ..+.+..++|++++.||+|+||+||+|.++    .+|+.||||++.....  ......+..|+. +++.++||||+++++
T Consensus        15 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~~~~h~niv~~~~   88 (327)
T 3aln_A           15 QHWDFTAEDLKDLGEIGRGAYGSVNKMVHK----PSGQIMAVKRIRSTVD--EKEQKQLLMDLDVVMRSSDCPYIVQFYG   88 (327)
T ss_dssp             EEECCCSCSEEC-CEEEECSSEEEEEEEET----TTTEEEEEEEEECCCC--HHHHHHHHHHHHHHHSSCCCTTBCCEEE
T ss_pred             HhcccCHHHhhehheeccCCCEEEEEEEEc----CCCCEEEEEEeecccC--chHHHHHHHHHHHHHHcCCCCcEeeeee
Confidence            445677899999999999999999999986    4789999999976421  223344445555 667789999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHh---CCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEE
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQR---QPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIML  229 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~---~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl  229 (457)
                      ++...+..|+||||++ ++|..++..   .....+++..+..++.|++.||.|||+. ||+||||||+|||++.++.+||
T Consensus        89 ~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl  167 (327)
T 3aln_A           89 ALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKL  167 (327)
T ss_dssp             EEECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEE
T ss_pred             EEEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEE
Confidence            9999999999999996 588766653   2346799999999999999999999998 9999999999999999999999


Q ss_pred             eccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccccc
Q 012762          230 TDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAE  309 (457)
Q Consensus       230 ~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (457)
                      +|||+++.......                                                                  
T Consensus       168 ~Dfg~~~~~~~~~~------------------------------------------------------------------  181 (327)
T 3aln_A          168 CDFGISGQLVDSIA------------------------------------------------------------------  181 (327)
T ss_dssp             CCCSSSCC------------------------------------------------------------------------
T ss_pred             ccCCCceecccccc------------------------------------------------------------------
Confidence            99999865432110                                                                  


Q ss_pred             CCccccccccCCCCccCchhh----cCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhccc-CCC--CCC
Q 012762          310 PLDVRSMSFVGTHEYLAPEII----SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARAL-EFP--KEP  381 (457)
Q Consensus       310 ~~~~~~~~~~gt~~y~aPE~l----~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~-~~~--~~~  381 (457)
                           .....||+.|+|||++    .+..++.++|||||||++|+|++|+.||.+.... ..+..+..... .++  ...
T Consensus       182 -----~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (327)
T 3aln_A          182 -----KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEER  256 (327)
T ss_dssp             -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSC
T ss_pred             -----cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccc
Confidence                 0122589999999999    4566899999999999999999999999875432 12211111111 111  123


Q ss_pred             CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       382 ~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                      .++.++.+||.+||..||++||+    +.+|++||||...++
T Consensus       257 ~~~~~l~~li~~~l~~dp~~Rps----~~ell~hp~~~~~~~  294 (327)
T 3aln_A          257 EFSPSFINFVNLCLTKDESKRPK----YKELLKHPFILMYEE  294 (327)
T ss_dssp             CCCHHHHHHHHHHTCSSGGGSCC----HHHHTTSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhCChhhCcC----HHHHHhChHHHHhHh
Confidence            57889999999999999999999    999999999987544

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=9.6e-46  Score=354.96  Aligned_cols=256  Identities=20%  Similarity=0.305  Sum_probs=214.9

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++++.||+|+||+||+|.+.     .+..||+|++....    .....+.+|+++|+.++||||++++++
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~   76 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYN-----GHTKVAVKSLKQGS----MSPDAFLAEANLMKQLQHQRLVRLYAV   76 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEET-----TTEEEEEEEECTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEc-----CCcEEEEEEecCCc----ccHHHHHHHHHHHHhCCCcCcceEEEE
Confidence            457788899999999999999999999864     56789999997543    234567889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.. +..|+||||+++++|.+++.......+++..+..++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        77 ~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  155 (279)
T 1qpc_A           77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGL  155 (279)
T ss_dssp             ECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             EcC-CCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcc
Confidence            874 5689999999999999988654333699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +..........                                                                     
T Consensus       156 ~~~~~~~~~~~---------------------------------------------------------------------  166 (279)
T 1qpc_A          156 ARLIEDNEYTA---------------------------------------------------------------------  166 (279)
T ss_dssp             CEECSSSCEEC---------------------------------------------------------------------
T ss_pred             cccccCccccc---------------------------------------------------------------------
Confidence            86543211100                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....|+..|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+... ........++.++.+++.+
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~  245 (279)
T 1qpc_A          167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG-YRMVRPDNCPEELYQLMRL  245 (279)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc-cCCCCcccccHHHHHHHHH
Confidence            001247889999999998889999999999999999999 99999988776666555443 3444455689999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||++||+    +.++++
T Consensus       246 ~l~~~p~~Rps----~~~l~~  262 (279)
T 1qpc_A          246 CWKERPEDRPT----FDYLRS  262 (279)
T ss_dssp             HTCSSGGGSCC----HHHHHH
T ss_pred             HhccChhhCCC----HHHHHH
Confidence            99999999999    888765

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=3.2e-46  Score=367.04  Aligned_cols=268  Identities=18%  Similarity=0.268  Sum_probs=215.1

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+..++|++++.||+|+||+||+|++... +..+++.||||++...  ........+.+|+.+++.++||||+++++++.
T Consensus        26 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  103 (327)
T 2yfx_A           26 EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSEQDELDFLMEALIISKFNHQNIVRCIGVSL  103 (327)
T ss_dssp             BCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS--CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc--cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc
Confidence            45567899999999999999999986432 2347889999999643  22344567888999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC---CCEE
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPD-----KRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD---GHIM  228 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~-----~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~---~~vk  228 (457)
                      ..+..|+||||+++++|.+++.....     ..+++..++.++.||+.||.|||++||+||||||+|||++.+   +.+|
T Consensus       104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~k  183 (327)
T 2yfx_A          104 QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAK  183 (327)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEE
T ss_pred             CCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEE
Confidence            99999999999999999999987532     358999999999999999999999999999999999999844   4699


Q ss_pred             EeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccc
Q 012762          229 LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVA  308 (457)
Q Consensus       229 l~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (457)
                      |+|||++.........                                                                
T Consensus       184 l~Dfg~~~~~~~~~~~----------------------------------------------------------------  199 (327)
T 2yfx_A          184 IGDFGMARDIYRASYY----------------------------------------------------------------  199 (327)
T ss_dssp             ECCCHHHHHHHC--------------------------------------------------------------------
T ss_pred             ECcccccccccccccc----------------------------------------------------------------
Confidence            9999987533211000                                                                


Q ss_pred             cCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHH
Q 012762          309 EPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPA  387 (457)
Q Consensus       309 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (457)
                          .......||+.|+|||++.+..++.++|||||||++|+|++ |..||...........+.... .......++..+
T Consensus       200 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  274 (327)
T 2yfx_A          200 ----RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG-RMDPPKNCPGPV  274 (327)
T ss_dssp             ------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-CCCCCTTCCHHH
T ss_pred             ----ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCC-CCCCCCCCCHHH
Confidence                00112358999999999999899999999999999999998 999999877766666555443 333445689999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .+||.+||..||.+||+    +.+|++|.|+-.
T Consensus       275 ~~li~~~l~~dp~~Rps----~~~ll~~l~~~~  303 (327)
T 2yfx_A          275 YRIMTQCWQHQPEDRPN----FAIILERIEYCT  303 (327)
T ss_dssp             HHHHHHHTCSSGGGSCC----HHHHHHHHHHHH
T ss_pred             HHHHHHHhcCChhhCcC----HHHHHHHHHHHh
Confidence            99999999999999999    999999977543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.3e-45  Score=354.82  Aligned_cols=268  Identities=18%  Similarity=0.292  Sum_probs=210.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE-EcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL-DCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~-~~~~~  160 (457)
                      ++|++.+.||+|+||+||+|++.    .+++.||||++.....     ...+..|+++++.++|++++..+.++ ...+.
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~   79 (296)
T 4hgt_A            9 NRYRLGRKIGSGSFGDIYLGTDI----AAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDY   79 (296)
T ss_dssp             --CEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEEC--------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTE
T ss_pred             CceEEeeeecCCCCeEEEEEEEc----CCCceEEEEeeccccc-----chHHHHHHHHHHHhcCCCCCCeeeeecCCCCc
Confidence            57999999999999999999976    4788999999765432     23467799999999887766665554 67778


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~~  237 (457)
                      .++||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||+++.
T Consensus        80 ~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~  157 (296)
T 4hgt_A           80 NVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             EEEEEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             eEEEEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence            89999999 99999998754 3569999999999999999999999999999999999999   7889999999999875


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ..........                                                               .......
T Consensus       158 ~~~~~~~~~~---------------------------------------------------------------~~~~~~~  174 (296)
T 4hgt_A          158 YRDARTHQHI---------------------------------------------------------------PYRENKN  174 (296)
T ss_dssp             CBCTTTCCBC---------------------------------------------------------------CCCCSCC
T ss_pred             ccCcccCccC---------------------------------------------------------------CCCcccc
Confidence            5432111000                                                               0001113


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh---HHHHHHHHhcccCCCC---CCCCChHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTLANVVARALEFPK---EPSVPGPAKDLI  391 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~ll  391 (457)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|+.||.+...   ...+..+.......+.   ...+++++.+||
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  254 (296)
T 4hgt_A          175 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYL  254 (296)
T ss_dssp             CCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHH
T ss_pred             cCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHH
Confidence            4699999999999999999999999999999999999999987432   2333333333333331   145789999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhc----------CCCCCCCCchhhh
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKR----------HQFFNGVNWALLR  427 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~----------hp~f~~~~~~~~~  427 (457)
                      .+||+.||++||+    +.+|++          ..|...++|..++
T Consensus       255 ~~~l~~~p~~Rpt----~~~l~~~l~~~~~~~~~~~~~~~dw~~~~  296 (296)
T 4hgt_A          255 NFCRSLRFDDKPD----YSYLRQLFRNLFHRQGFSYDYVFDWNMLK  296 (296)
T ss_dssp             HHHHTSCTTCCCC----HHHHHHHHHHHHHHHTCCTTCCCGGGGCC
T ss_pred             HHHHhcCCCCCCC----HHHHHHHHHHHHHHhCCCccCccchhhcC
Confidence            9999999999999    777754          5677778887653

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=360.77  Aligned_cols=264  Identities=24%  Similarity=0.364  Sum_probs=201.5

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      ......++|++++.||+|+||+||+|+++    .+|+.||||++...... ......+..+..+++.++||||+++++++
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~   93 (318)
T 2dyl_A           19 RYQAEINDLENLGEMGSGTCGQVWKMRFR----KTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTF   93 (318)
T ss_dssp             EEECCGGGEEEEEEC------CEEEEEET----TTCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEE
T ss_pred             hhhhhhccccccceeeecCCeeEEEEEEe----cCCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEE
Confidence            34566789999999999999999999986    37889999999765322 22233344455567888999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-CceeecCCCCCeEEccCCCEEEeccCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-GIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ..++..|+||||+ ++.+..+.... ...+++..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||+
T Consensus        94 ~~~~~~~lv~e~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  171 (318)
T 2dyl_A           94 ITNTDVFIAMELM-GTCAEKLKKRM-QGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGI  171 (318)
T ss_dssp             ECSSEEEEEECCC-SEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             ecCCcEEEEEecc-CCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCC
Confidence            9999999999999 66676665542 36799999999999999999999995 999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +........                                                                       
T Consensus       172 ~~~~~~~~~-----------------------------------------------------------------------  180 (318)
T 2dyl_A          172 SGRLVDDKA-----------------------------------------------------------------------  180 (318)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             chhccCCcc-----------------------------------------------------------------------
Confidence            754432110                                                                       


Q ss_pred             cccccCCCCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCC-ChHHHHHHHHhcccC-CCCCCCCChHH
Q 012762          315 SMSFVGTHEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGI-DHELTLANVVARALE-FPKEPSVPGPA  387 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~  387 (457)
                      .....||+.|+|||++.     +..++.++|||||||++|+|++|+.||... .....+..+...... .+....++.++
T Consensus       181 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  260 (318)
T 2dyl_A          181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDF  260 (318)
T ss_dssp             ------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHH
T ss_pred             ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHH
Confidence            01235899999999995     456889999999999999999999999874 344455555544322 33334688999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .+||.+||..||.+||+    +.+|++||||+..
T Consensus       261 ~~li~~~l~~dp~~Rps----~~~ll~h~~~~~~  290 (318)
T 2dyl_A          261 QSFVKDCLTKDHRKRPK----YNKLLEHSFIKRY  290 (318)
T ss_dssp             HHHHHHHTCSCTTTSCC----HHHHTTSHHHHHH
T ss_pred             HHHHHHHccCChhHCcC----HHHHhhCHHHHhc
Confidence            99999999999999999    9999999999853

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.9e-45  Score=355.13  Aligned_cols=259  Identities=21%  Similarity=0.346  Sum_probs=202.3

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ...+++..++|++.++||+|+||+||+|.+.       ..||+|+++.... .......+.+|+++|+.++|+||+++++
T Consensus        16 ~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~-------~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (289)
T 3og7_A           16 ADDWEIPDGQITVGQRIGSGSFGTVYKGKWH-------GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMG   87 (289)
T ss_dssp             --CCBCCTTSCEEEEEEEECSSEEEEEEESS-------SEEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEE
T ss_pred             CCCCccCccceeeeeEecCCCCeEEEEEEEc-------CceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            3456788899999999999999999999753       2499999965432 3345567888999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +. ..+..++||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||
T Consensus        88 ~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg  165 (289)
T 3og7_A           88 YS-TAPQLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFG  165 (289)
T ss_dssp             EE-CSSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC
T ss_pred             ec-cCCccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccce
Confidence            65 456789999999999999888654 3679999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.........                                                                    .
T Consensus       166 ~~~~~~~~~~~--------------------------------------------------------------------~  177 (289)
T 3og7_A          166 LATEKSRWSGS--------------------------------------------------------------------H  177 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecccccccccc--------------------------------------------------------------------c
Confidence            98644311100                                                                    0


Q ss_pred             ccccccCCCCccCchhhc---CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC----CCCCChH
Q 012762          314 RSMSFVGTHEYLAPEIIS---GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK----EPSVPGP  386 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~---~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  386 (457)
                      ......||+.|+|||++.   +..++.++|||||||++|+|++|+.||.+.........++......+.    ...+++.
T Consensus       178 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (289)
T 3og7_A          178 QFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKR  257 (289)
T ss_dssp             ------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHH
T ss_pred             cccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHH
Confidence            111346999999999997   566888999999999999999999999887666555555444322222    2357889


Q ss_pred             HHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          387 AKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       387 ~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +.+||.+||..||.+||+    +.++++
T Consensus       258 l~~li~~~l~~~p~~Rps----~~ell~  281 (289)
T 3og7_A          258 MKRLMAECLKKKRDERPS----FPRILA  281 (289)
T ss_dssp             HHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             HHHHHHHHccCChhhCCC----HHHHHH
Confidence            999999999999999999    888875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=9.5e-46  Score=369.33  Aligned_cols=280  Identities=14%  Similarity=0.187  Sum_probs=206.7

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhH--------HHHHHHHHHHHHHcCCCCCc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNK--------ESRARIEREILEMLDHPFLP  149 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~--------~~~~~~E~~il~~l~H~nIv  149 (457)
                      +..++|++.+.||+|+||+||+|.++... ...++.||||++..........        ...+..|+.+++.++|+||+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv  111 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVP  111 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCC
Confidence            44568999999999999999999886422 2246899999987643211111        11223345566677899999


Q ss_pred             eEEEEEEcC----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc--c
Q 012762          150 TLYATLDCP----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR--S  223 (457)
Q Consensus       150 ~l~~~~~~~----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~--~  223 (457)
                      ++++++...    .+.||||||+ |++|.+++... ...+++..++.++.||+.||.|||++||+||||||+||||+  .
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSC
T ss_pred             eEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCC
Confidence            999998764    4589999999 99999998774 36799999999999999999999999999999999999999  8


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.+||+|||+++...........                                                        
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~~~~--------------------------------------------------------  213 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVHKAY--------------------------------------------------------  213 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCCCCS--------------------------------------------------------
T ss_pred             CCeEEEEECCcceecccCCccccc--------------------------------------------------------
Confidence            899999999998765421110000                                                        


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-------
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-------  376 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-------  376 (457)
                             ........+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..............+.       
T Consensus       214 -------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  286 (364)
T 3op5_A          214 -------AADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLM  286 (364)
T ss_dssp             -------SCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHH
T ss_pred             -------ccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHH
Confidence                   000112346999999999999999999999999999999999999999864322222111111000       


Q ss_pred             --CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHh----------cCCCCCCCCchhhh
Q 012762          377 --FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIK----------RHQFFNGVNWALLR  427 (457)
Q Consensus       377 --~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll----------~hp~f~~~~~~~~~  427 (457)
                        ......++.++.++|..||..||++||+    +.+|+          ..++...++|....
T Consensus       287 ~~~~~~~~~~~~~~~li~~cl~~~p~~RP~----~~~l~~~l~~~~~~~~~~~~~~~dw~~~~  345 (364)
T 3op5_A          287 DKCFPAANAPGEIAKYMETVKLLDYTEKPL----YENLRDILLQGLKAIGSKDDGKLDLSVVE  345 (364)
T ss_dssp             HHHSCTTCCCHHHHHHHHHHHTCCTTCCCC----HHHHHHHHHHHHHHTTCCCCCCCCC----
T ss_pred             HHhcccccCHHHHHHHHHHHhcCCCCCCCC----HHHHHHHHHHHHHHcCCCcCCccceEecc
Confidence              0012457899999999999999999999    66554          34666778897653

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=3.7e-45  Score=353.39  Aligned_cols=261  Identities=20%  Similarity=0.266  Sum_probs=212.7

Q ss_pred             CCCccCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ...+..++|++.+ .||+|+||+||+|.+..  ...++.||||++..... .......+.+|+++++.++||||++++++
T Consensus        10 ~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~--~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~   86 (291)
T 1xbb_A           10 EVYLDRKLLTLEDKELGSGNFGTVKKGYYQM--KKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGI   86 (291)
T ss_dssp             -CBCCGGGEEEEEEEEEECSSEEEEEEEEEC--SSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             eeeecchhhhhccCccccccCeeeEeeeecC--CCceeeEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            3456667899998 99999999999997642  24678999999976532 23345678889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      + ..+..|+||||+++++|.+++...  ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus        87 ~-~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~  163 (291)
T 1xbb_A           87 C-EAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGL  163 (291)
T ss_dssp             E-ESSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred             E-CCCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCc
Confidence            9 566789999999999999999875  5699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +...........                                                                   .
T Consensus       164 ~~~~~~~~~~~~-------------------------------------------------------------------~  176 (291)
T 1xbb_A          164 SKALRADENYYK-------------------------------------------------------------------A  176 (291)
T ss_dssp             CEECCTTCSEEE-------------------------------------------------------------------C
T ss_pred             ceeeccCCCccc-------------------------------------------------------------------c
Confidence            865532211100                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|+|||++.+..++.++|||||||++|+|++ |+.||.+.........+... ........++.++.++|.+
T Consensus       177 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~  255 (291)
T 1xbb_A          177 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG-ERMGCPAGCPREMYDLMNL  255 (291)
T ss_dssp             ----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHH
T ss_pred             cccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHH
Confidence            001236889999999998889999999999999999999 99999988776665555443 3334445689999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc
Q 012762          394 LLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ||..||.+||+    +.++++
T Consensus       256 ~l~~dp~~Rps----~~~l~~  272 (291)
T 1xbb_A          256 CWTYDVENRPG----FAAVEL  272 (291)
T ss_dssp             HTCSSTTTSCC----HHHHHH
T ss_pred             HcCCChhhCcC----HHHHHH
Confidence            99999999999    887765

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.2e-45  Score=362.92  Aligned_cols=256  Identities=22%  Similarity=0.330  Sum_probs=211.9

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCce--EEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCF--FAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~--vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      .+..++|++.+.||+|+||+||+|+++.    ++..  +|+|++...  ........+.+|+++|+++ +||||++++++
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~----~~~~~~v~iK~~~~~--~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~   94 (327)
T 1fvr_A           21 VLDWNDIKFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGA   94 (327)
T ss_dssp             BCCGGGCEEEEEEECGGGCEEEEEEEEE----TTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEE
T ss_pred             cccHHHccceeeeecCCCceEEEEEEcc----CCcccceeeeeeccc--cchHHHHHHHHHHHHHHhccCCCchhhhcee
Confidence            4666899999999999999999999874    5654  499998643  2233456678899999999 89999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeE
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL  220 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIl  220 (457)
                      +...+..|+||||+++++|.+++....              ...+++..++.++.||+.||.|||++||+||||||+|||
T Consensus        95 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl  174 (327)
T 1fvr_A           95 CEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL  174 (327)
T ss_dssp             EEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             eeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEE
Confidence            999999999999999999999987642              246999999999999999999999999999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                      ++.++.+||+|||+++......                                                          
T Consensus       175 ~~~~~~~kL~Dfg~~~~~~~~~----------------------------------------------------------  196 (327)
T 1fvr_A          175 VGENYVAKIADFGLSRGQEVYV----------------------------------------------------------  196 (327)
T ss_dssp             ECGGGCEEECCTTCEESSCEEC----------------------------------------------------------
T ss_pred             EcCCCeEEEcccCcCccccccc----------------------------------------------------------
Confidence            9999999999999975322100                                                          


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCC
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                   ......+++.|+|||++.+..++.++|||||||++|||++ |..||.+.........+.. ......
T Consensus       197 -------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~-~~~~~~  262 (327)
T 1fvr_A          197 -------------KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ-GYRLEK  262 (327)
T ss_dssp             -------------CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGG-TCCCCC
T ss_pred             -------------cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhc-CCCCCC
Confidence                         0011247889999999998889999999999999999998 9999998877666555443 334444


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ...+++++.+||.+||..||.+||+    +.+++++
T Consensus       263 ~~~~~~~l~~li~~~l~~dp~~Rps----~~ell~~  294 (327)
T 1fvr_A          263 PLNCDDEVYDLMRQCWREKPYERPS----FAQILVS  294 (327)
T ss_dssp             CTTBCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCCCCHHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            5568999999999999999999999    8888875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=3.6e-45  Score=357.03  Aligned_cols=268  Identities=18%  Similarity=0.239  Sum_probs=212.1

Q ss_pred             CCCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEE
Q 012762           73 NNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLY  152 (457)
Q Consensus        73 ~~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~  152 (457)
                      ......+..++|.+.+.||+|+||+||+|.+... ..++..||+|++..... .......+.+|++++++++||||++++
T Consensus        25 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~-~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~  102 (313)
T 3brb_A           25 KLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQE-DGTSLKVAVKTMKLDNS-SQREIEEFLSEAACMKDFSHPNVIRLL  102 (313)
T ss_dssp             CTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECT-TSCEEEEEEEEC---CC-CHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             hHHhcccCHHHeeeccceeecCCeEEEEEEEecc-CCceeEEEEEEEecccc-chhHHHHHHHHHHHHhcCCCCCeeeee
Confidence            3445566778999999999999999999987642 23567899999975432 233456788899999999999999999


Q ss_pred             EEEEcCC-----cEEEEEeecCCCChHHHHHhC----CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc
Q 012762          153 ATLDCPR-----WSCLLTEFCPGGDLHVLRQRQ----PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS  223 (457)
Q Consensus       153 ~~~~~~~-----~~~lV~E~~~~~sL~~~~~~~----~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~  223 (457)
                      +++...+     ..|+||||+++++|..++...    ....+++..++.++.||+.||.|||++||+||||||+|||++.
T Consensus       103 ~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~  182 (313)
T 3brb_A          103 GVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRD  182 (313)
T ss_dssp             EEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECT
T ss_pred             EEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcC
Confidence            9997655     359999999999999888542    3356999999999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCC
Q 012762          224 DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGT  303 (457)
Q Consensus       224 ~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (457)
                      ++.+||+|||++..........                                                          
T Consensus       183 ~~~~kl~Dfg~~~~~~~~~~~~----------------------------------------------------------  204 (313)
T 3brb_A          183 DMTVCVADFGLSKKIYSGDYYR----------------------------------------------------------  204 (313)
T ss_dssp             TSCEEECSCSCC--------------------------------------------------------------------
T ss_pred             CCcEEEeecCcceecccccccC----------------------------------------------------------
Confidence            9999999999986543211000                                                          


Q ss_pred             CcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          304 PEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       304 ~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                                ......|++.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+.... ..+....
T Consensus       205 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~  273 (313)
T 3brb_A          205 ----------QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGH-RLKQPED  273 (313)
T ss_dssp             ----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC-CCCCBTT
T ss_pred             ----------cccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCC-CCCCCcc
Confidence                      0012247889999999999999999999999999999999 999999887776666655443 3344456


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +++++.++|.+||..||.+||+    +.+|+++
T Consensus       274 ~~~~l~~li~~~l~~dp~~Rps----~~~l~~~  302 (313)
T 3brb_A          274 CLDELYEIMYSCWRTDPLDRPT----FSVLRLQ  302 (313)
T ss_dssp             CCHHHHHHHHHTTCSSGGGSCC----HHHHHHH
T ss_pred             ccHHHHHHHHHHcCCChhhCcC----HHHHHHH
Confidence            8899999999999999999999    8888765

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1e-45  Score=354.83  Aligned_cols=251  Identities=20%  Similarity=0.325  Sum_probs=207.0

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.+      .|+.||+|++...     .....+.+|+++++.++||||++++++
T Consensus        14 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~~~~~   82 (278)
T 1byg_A           14 SGWALNMKELKLLQTIGKGEFGDVMLGDY------RGNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGV   82 (278)
T ss_dssp             -CCBCCGGGEEEEEEEEECSSCEEEEEEE------TTEEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEE
T ss_pred             ccccCChhhceEEeEEecCCCceEEEEEE------cCCEEEEEEecch-----hHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            34667889999999999999999999975      4778999999653     245667889999999999999999999


Q ss_pred             EEcC-CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          155 LDCP-RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       155 ~~~~-~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +... +..|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg  162 (278)
T 1byg_A           83 IVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFG  162 (278)
T ss_dssp             ECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCC
T ss_pred             EEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecc
Confidence            7544 578999999999999999876533348999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.......                                                                       
T Consensus       163 ~~~~~~~~~-----------------------------------------------------------------------  171 (278)
T 1byg_A          163 LTKEASSTQ-----------------------------------------------------------------------  171 (278)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            875432110                                                                       


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                        ....+++.|+|||++.+..++.++|||||||++|+|++ |..||...........+.. .........+++.+.++|.
T Consensus       172 --~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~  248 (278)
T 1byg_A          172 --DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYEVMK  248 (278)
T ss_dssp             ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-TCCCCCCTTCCHHHHHHHH
T ss_pred             --cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc-CCCCCCcccCCHHHHHHHH
Confidence              01247889999999999999999999999999999998 9999998776666555443 3344445568999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +||..||++||+    +.++++
T Consensus       249 ~~l~~~p~~Rps----~~~l~~  266 (278)
T 1byg_A          249 NCWHLDAAMRPS----FLQLRE  266 (278)
T ss_dssp             HHTCSSGGGSCC----HHHHHH
T ss_pred             HHhcCChhhCCC----HHHHHH
Confidence            999999999999    887765

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=2.7e-45  Score=378.43  Aligned_cols=272  Identities=18%  Similarity=0.291  Sum_probs=216.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC-CCCceEEEEEEcC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH-PFLPTLYATLDCP  158 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H-~nIv~l~~~~~~~  158 (457)
                      ..++|+++++||+|+||+||+|++.    .+++.||||++....     ....+..|+++++.|+| ++|..+..++...
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~-----~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~   75 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNI----QTNEEVAIKLENVKT-----KHPQLLYESKIYRILQGGTGIPNVRWFGVEG   75 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEET----TTCCEEEEEEEETTC-----SSCCHHHHHHHHHHTTTSTTCCCEEEEEEET
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEEC----CCCcEEEEEEecccc-----ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeC
Confidence            3468999999999999999999976    478899999986543     22346779999999976 5666777777888


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLS  235 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s  235 (457)
                      +..||||||+ +++|.+++... ...+++..++.++.||+.||.|||++|||||||||+||||   +.++.+||+|||++
T Consensus        76 ~~~~lvme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla  153 (483)
T 3sv0_A           76 DYNVLVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLA  153 (483)
T ss_dssp             TEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred             CEEEEEEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcc
Confidence            8999999999 99999998764 3579999999999999999999999999999999999999   58899999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +............                                                               -...
T Consensus       154 ~~~~~~~~~~~~~---------------------------------------------------------------~~~~  170 (483)
T 3sv0_A          154 KKYRDTSTHQHIP---------------------------------------------------------------YREN  170 (483)
T ss_dssp             EECBCTTTCCBCC---------------------------------------------------------------CCCC
T ss_pred             eeccCCccccccc---------------------------------------------------------------cccc
Confidence            7654322110000                                                               0011


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh---HHHHHHHHhcccCCCC---CCCCChHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTLANVVARALEFPK---EPSVPGPAKD  389 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~  389 (457)
                      ....||+.|+|||++.+..++.++|||||||+||||++|+.||.+...   ...+..+.........   ...++.++.+
T Consensus       171 ~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~  250 (483)
T 3sv0_A          171 KNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFAS  250 (483)
T ss_dssp             CCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHH
T ss_pred             cccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHH
Confidence            135699999999999999999999999999999999999999987543   3333443333222211   1357899999


Q ss_pred             HHHHHhhhCCCCCCCCCcChHHHh----------cCCCCCCCCchhhhcc
Q 012762          390 LIAQLLVKDPTRRMGSKMGATAIK----------RHQFFNGVNWALLRCA  429 (457)
Q Consensus       390 ll~~~L~~dP~~Rps~~~~~~~ll----------~hp~f~~~~~~~~~~~  429 (457)
                      ||.+||..||++||+    +.+|+          .++|+..++|..++..
T Consensus       251 li~~cl~~dP~~RPs----~~el~~~L~~l~~~~~~~~~~~~dW~~~~~~  296 (483)
T 3sv0_A          251 YFHYCRSLRFDDKPD----YSYLKRLFRDLFIREGFQFDYVFDWTILKYQ  296 (483)
T ss_dssp             HHHHHHTCCTTCCCC----HHHHHHHHHHHHHHTTCCCSSCCHHHHHTC-
T ss_pred             HHHHHhcCChhhCcC----HHHHHHHHHHHHHHcCCCccCCcCchhhccc
Confidence            999999999999999    55543          5899999999988554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.2e-45  Score=351.85  Aligned_cols=257  Identities=18%  Similarity=0.234  Sum_probs=207.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE-
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS-  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~-  161 (457)
                      .|.+.++||+|+||+||+|.+.... .++..||+|++...  ........+.+|+++++.++||||+++++++...+.. 
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~~aiK~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   98 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQA-QNRIQCAIKSLSRI--TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLP   98 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSS-SCEEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred             EEccCceeccCCCceEEEEEEecCC-Cceeeeeeeecccc--ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCc
Confidence            4667799999999999999976422 34568999998653  2334456788899999999999999999999876655 


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      ++||||+.+++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....
T Consensus        99 ~~v~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  177 (298)
T 3pls_A           99 HVLLPYMCHGDLLQFIRSP-QRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR  177 (298)
T ss_dssp             EEEECCCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTG
T ss_pred             EEEEecccCCCHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCC
Confidence            9999999999999988763 467899999999999999999999999999999999999999999999999998654321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ....                                                                  ........||
T Consensus       178 ~~~~------------------------------------------------------------------~~~~~~~~~~  191 (298)
T 3pls_A          178 EYYS------------------------------------------------------------------VQQHRHARLP  191 (298)
T ss_dssp             GGGC------------------------------------------------------------------SCCSSCTTCG
T ss_pred             cccc------------------------------------------------------------------cccCcCCCCC
Confidence            1100                                                                  0011123588


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCC-CCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTP-FKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~P-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +.|+|||++.+..++.++|||||||++|+|++|..| |...... .....+......+....+++.+.++|.+||..||.
T Consensus       192 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~  270 (298)
T 3pls_A          192 VKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF-DLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPA  270 (298)
T ss_dssp             GGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG-GHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH-HHHHHhhcCCCCCCCccchHHHHHHHHHHccCChh
Confidence            999999999999999999999999999999995555 5444444 44444444445555667899999999999999999


Q ss_pred             CCCCCCcChHHHhc
Q 012762          401 RRMGSKMGATAIKR  414 (457)
Q Consensus       401 ~Rps~~~~~~~ll~  414 (457)
                      +||+    +.++++
T Consensus       271 ~Rps----~~~ll~  280 (298)
T 3pls_A          271 VRPT----FRVLVG  280 (298)
T ss_dssp             GSCC----HHHHHH
T ss_pred             hCcC----HHHHHH
Confidence            9999    877765

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1.2e-45  Score=386.74  Aligned_cols=261  Identities=23%  Similarity=0.338  Sum_probs=219.0

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.++||+|+||+||+|.++     .+..||||+++....    ..+.+.+|+++|++|+|+||++++++
T Consensus       260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~-----~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~hpniv~~~~~  330 (535)
T 2h8h_A          260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWN-----GTTRVAIKTLKPGTM----SPEAFLQEAQVMKKLRHEKLVQLYAV  330 (535)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSEEEEEEEET-----TTEEEEEEEECTTSS----CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cceecchhhhhhheecccCCCeEEEEEEEC-----CCceEEEEEeCCCCC----CHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            345677788999999999999999999975     456799999976432    34568889999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.. +.+||||||+++|+|.+++.......+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+
T Consensus       331 ~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  409 (535)
T 2h8h_A          331 VSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGL  409 (535)
T ss_dssp             ECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTS
T ss_pred             Eee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEccccc
Confidence            876 6789999999999999998764445699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                     
T Consensus       410 a~~~~~~~~~~---------------------------------------------------------------------  420 (535)
T 2h8h_A          410 ARLIEDNEYTA---------------------------------------------------------------------  420 (535)
T ss_dssp             TTTCCCHHHHT---------------------------------------------------------------------
T ss_pred             ceecCCCceec---------------------------------------------------------------------
Confidence            86553211000                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....++..|+|||++.+..++.++|||||||+||||++ |+.||.+....+.+..+. ...+.+....++..+.+||.+
T Consensus       421 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~  499 (535)
T 2h8h_A          421 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVE-RGYRMPCPPECPESLHDLMCQ  499 (535)
T ss_dssp             TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHH
Confidence            001247889999999999899999999999999999999 999999988777666554 445566666799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC--CCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH--QFFN  419 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h--p~f~  419 (457)
                      ||..||++||+    +++|++.  .+|.
T Consensus       500 cl~~dP~~RPt----~~~l~~~L~~~~~  523 (535)
T 2h8h_A          500 CWRKEPEERPT----FEYLQAFLEDYFT  523 (535)
T ss_dssp             HTCSSGGGSCC----HHHHHHHHHTSSC
T ss_pred             HcCCChhHCcC----HHHHHHHHHHHhh
Confidence            99999999999    8877653  3444

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.1e-45  Score=354.13  Aligned_cols=255  Identities=22%  Similarity=0.392  Sum_probs=204.0

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.+.||+|+||+||+|.+      .++.||+|++...     .....+.+|+++|++++||||+++++++.+
T Consensus         4 ~i~~~~~~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~   72 (307)
T 2eva_A            4 MIDYKEIEVEEVVGRGAFGVVCKAKW------RAKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACLN   72 (307)
T ss_dssp             BCCGGGEEEEEEEECCSSSEEEEEEE------TTEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCTT
T ss_pred             cCCHhHeeeeeEeecCCCceEEEEEE------CCeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC
Confidence            35677999999999999999999986      3678999998643     345678889999999999999999998863


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHH---cCceeecCCCCCeEEccCCC-EEEecc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPD-KRFHESAVRFYASEVVVALEFLHM---MGIIYRDLKPENVLVRSDGH-IMLTDF  232 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~-~~~~~~~~~~i~~qi~~~L~yLH~---~~iiHrDIKp~NIll~~~~~-vkl~DF  232 (457)
                        ..|+||||+++++|.+++..... ..+++..+..++.||+.||.|||+   +||+||||||+|||++.++. +||+||
T Consensus        73 --~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Df  150 (307)
T 2eva_A           73 --PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDF  150 (307)
T ss_dssp             --TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCC
T ss_pred             --CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccc
Confidence              47999999999999999876422 247899999999999999999999   89999999999999998886 799999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |++.......                                                                      
T Consensus       151 g~~~~~~~~~----------------------------------------------------------------------  160 (307)
T 2eva_A          151 GTACDIQTHM----------------------------------------------------------------------  160 (307)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             cccccccccc----------------------------------------------------------------------
Confidence            9975432110                                                                      


Q ss_pred             cccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                         ....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ............+....++..+.++|
T Consensus       161 ---~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  237 (307)
T 2eva_A          161 ---TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLM  237 (307)
T ss_dssp             -------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHH
T ss_pred             ---ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHHH
Confidence               01248999999999999999999999999999999999999998653322 22222223333444456899999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhc-----CCCCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKR-----HQFFNGVN  422 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~-----hp~f~~~~  422 (457)
                      .+||+.||++||+    +.++++     ..+|.+.+
T Consensus       238 ~~~l~~dp~~Rps----~~ell~~L~~~~~~~~~~~  269 (307)
T 2eva_A          238 TRCWSKDPSQRPS----MEEIVKIMTHLMRYFPGAD  269 (307)
T ss_dssp             HHHTCSSGGGSCC----HHHHHHHHHHHGGGCCCTT
T ss_pred             HHHhcCChhhCcC----HHHHHHHHHHHHHhccCCC
Confidence            9999999999999    888876     35555433

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.5e-45  Score=385.62  Aligned_cols=260  Identities=20%  Similarity=0.278  Sum_probs=212.5

Q ss_pred             CCCccCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           76 NNPLTLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        76 ~~~~~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      .+.+..+++.+.+ +||+|+||+||+|.++..  ..+..||||+++..  ........+.+|+++|++++|||||+++++
T Consensus       329 ~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~--~~~~~vAvK~~~~~--~~~~~~~~~~~E~~il~~l~hpniv~l~~~  404 (613)
T 2ozo_A          329 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMR--KKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIVRLIGV  404 (613)
T ss_dssp             CSBCCTTSEEEEEEEEEECSSSEEEEEEEECS--SCEEEEEEEECCCC--CSSTTHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred             ceeccccceeEcCcEEecCCCcEEEEEEEecC--CCcEEEEEEEcCCC--CChHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence            3445666777777 899999999999987632  35678999999764  223456778899999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.. +.+|||||||.+|+|.+++... ...+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+
T Consensus       405 ~~~-~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGl  482 (613)
T 2ozo_A          405 CQA-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGL  482 (613)
T ss_dssp             EES-SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCST
T ss_pred             ecc-CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccC
Confidence            976 5689999999999999988654 35699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++..........                                                                   .
T Consensus       483 a~~~~~~~~~~~-------------------------------------------------------------------~  495 (613)
T 2ozo_A          483 SKALGADDSYYT-------------------------------------------------------------------A  495 (613)
T ss_dssp             TTTCC---------------------------------------------------------------------------
T ss_pred             cccccCCCceee-------------------------------------------------------------------e
Confidence            876532111000                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+..+ .+.+....+++++.+||.+
T Consensus       496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~  574 (613)
T 2ozo_A          496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG-KRMECPPECPPELYALMSD  574 (613)
T ss_dssp             ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTT-CCCCCCTTCCHHHHHHHHH
T ss_pred             ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC-CCCCCCCcCCHHHHHHHHH
Confidence            001136789999999999999999999999999999998 99999998877766665543 3455556799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHh
Q 012762          394 LLVKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll  413 (457)
                      ||..||++||+    +.+|+
T Consensus       575 cl~~dP~~RPs----~~~l~  590 (613)
T 2ozo_A          575 CWIYKWEDRPD----FLTVE  590 (613)
T ss_dssp             TTCSSTTTSCC----HHHHH
T ss_pred             HcCCChhHCcC----HHHHH
Confidence            99999999999    77764

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=365.82  Aligned_cols=266  Identities=18%  Similarity=0.196  Sum_probs=199.4

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh--------hhHHHHHHHHHHHHHHcCCCCCce
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS--------RNKESRARIEREILEMLDHPFLPT  150 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~--------~~~~~~~~~E~~il~~l~H~nIv~  150 (457)
                      +..++|++.+.||+|+||+||+|.+.... .++..||+|++.......        ......+.+|+.+++.++||||++
T Consensus        34 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~  112 (345)
T 2v62_A           34 MEGNQWVLGKKIGSGGFGLIYLAFPTNKP-EKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPL  112 (345)
T ss_dssp             TTSCEEEEEEEC------CEEEEEESSSC-GGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCC
T ss_pred             ccCceEEEEeeEeecCCeEEEEEEecCCC-CccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcce
Confidence            44578999999999999999999986321 267889999987543211        111233556888899999999999


Q ss_pred             EEEEEEc----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-
Q 012762          151 LYATLDC----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-  225 (457)
Q Consensus       151 l~~~~~~----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-  225 (457)
                      +++++..    ....||||||+ +++|.+++...  +.+++..++.++.||+.||.|||++||+||||||+|||++.++ 
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~  189 (345)
T 2v62_A          113 FYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN--GTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNP  189 (345)
T ss_dssp             EEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGG--GBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSST
T ss_pred             eecccccccCCCcEEEEEEecc-CCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCC
Confidence            9999987    67899999999 99999988765  4799999999999999999999999999999999999999887 


Q ss_pred             -CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          226 -HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       226 -~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                       .+||+|||+++..........                                                          
T Consensus       190 ~~~kL~Dfg~a~~~~~~~~~~~----------------------------------------------------------  211 (345)
T 2v62_A          190 DQVYLADYGLSYRYCPNGNHKQ----------------------------------------------------------  211 (345)
T ss_dssp             TSEEECCCTTCEESSGGGCCCC----------------------------------------------------------
T ss_pred             CcEEEEeCCCceeccccccccc----------------------------------------------------------
Confidence             999999999865532111000                                                          


Q ss_pred             cccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHH-hcccCCCC---
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVV-ARALEFPK---  379 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~-~~~~~~~~---  379 (457)
                           ..........||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ........ ......+.   
T Consensus       212 -----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (345)
T 2v62_A          212 -----YQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVL  286 (345)
T ss_dssp             -----CCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHH
T ss_pred             -----chhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHH
Confidence                 000111234699999999999999999999999999999999999999965322 11111111 11111111   


Q ss_pred             ----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          380 ----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       380 ----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                          ...++.++.++|.+||..||++||+    +++|++.
T Consensus       287 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~~l~~~  322 (345)
T 2v62_A          287 KWAPSGSSCCEIAQFLVCAHSLAYDEKPN----YQALKKI  322 (345)
T ss_dssp             HHSCTTSCCHHHHHHHHHHHTCCTTCCCC----HHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHhhcCcccCCC----HHHHHHH
Confidence                1258899999999999999999999    8887663

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=4.5e-46  Score=365.00  Aligned_cols=256  Identities=21%  Similarity=0.220  Sum_probs=205.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.+.||+|+||+||+|.++     +++.||||++....   ......+.+|+++|+.++||||+++++++...+
T Consensus        37 ~~~~y~~~~~lg~G~~g~Vy~~~~~-----~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           37 ATNNFDHKFLIGHGVFGKVYKGVLR-----DGAKVALKRRTPES---SQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             CCCCCSCCCCSCBCSSSEEEEEECT-----TCCEEEEEECCSCC---SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             HHhccCccceeecCCCeeEEEEEEC-----CCCEEEEEEecccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            4578999999999999999999864     68899999986542   234567888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ..|+||||+++++|.+++....  ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  188 (321)
T 2qkw_B          109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKK  188 (321)
T ss_dssp             CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence            9999999999999998876542  23589999999999999999999999999999999999999999999999999864


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                    .....
T Consensus       189 ~~~~~~~--------------------------------------------------------------------~~~~~  200 (321)
T 2qkw_B          189 GTELDQT--------------------------------------------------------------------HLSTV  200 (321)
T ss_dssp             CSSSSCC--------------------------------------------------------------------CCBCC
T ss_pred             ccccccc--------------------------------------------------------------------ccccc
Confidence            3311100                                                                    00112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHH-------HHHHhcccCC--------CCCCC
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTL-------ANVVARALEF--------PKEPS  382 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~-------~~~~~~~~~~--------~~~~~  382 (457)
                      ..||+.|+|||++.+..++.++|||||||++|||++|+.||.+.......       .......+..        .....
T Consensus       201 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (321)
T 2qkw_B          201 VKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPE  280 (321)
T ss_dssp             CEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHH
T ss_pred             cCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHH
Confidence            35899999999999889999999999999999999999999764332111       0111111110        01112


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+..+.+++.+||..||++||+    +.|+++|
T Consensus       281 ~~~~l~~li~~~l~~dP~~Rps----~~ell~~  309 (321)
T 2qkw_B          281 SLRKFGDTAVKCLALSSEDRPS----MGDVLWK  309 (321)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCcC----HHHHHHH
Confidence            3456889999999999999999    9998876

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=6.8e-45  Score=352.42  Aligned_cols=258  Identities=15%  Similarity=0.235  Sum_probs=207.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE-EcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL-DCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~-~~~~~  160 (457)
                      .+|++.++||+|+||+||+|.+.... ..+..||+|++...  ........+.+|++++++++||||+++++++ ..++.
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  101 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS  101 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC------CEEEEEEEETTC--CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred             eehhhcceeeecCCceEEEEEEecCC-CceeEEEEEecccC--CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence            46999999999999999999875322 24457899998653  2334556788899999999999999999985 45668


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus       102 ~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~  180 (298)
T 3f66_A          102 PLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  180 (298)
T ss_dssp             CEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred             eEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence            89999999999999998753 36689999999999999999999999999999999999999999999999999875542


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .....                                                                  ........|
T Consensus       181 ~~~~~------------------------------------------------------------------~~~~~~~~~  194 (298)
T 3f66_A          181 KEYYS------------------------------------------------------------------VHNKTGAKL  194 (298)
T ss_dssp             GGGCB------------------------------------------------------------------C-----CCB
T ss_pred             cchhc------------------------------------------------------------------cccccCCCC
Confidence            21100                                                                  000112358


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|+|||++.+..++.++|||||||++|+|++ |.+||.+.........+.... .......+++.+.+++.+||..||
T Consensus       195 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p  273 (298)
T 3f66_A          195 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR-RLLQPEYCPDPLYEVMLKCWHPKA  273 (298)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             CccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCC-CCCCCccCCHHHHHHHHHHcCCCh
Confidence            899999999999999999999999999999999 677777766665555555443 333345688999999999999999


Q ss_pred             CCCCCCCcChHHHhc
Q 012762          400 TRRMGSKMGATAIKR  414 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~  414 (457)
                      ++||+    +.++++
T Consensus       274 ~~Rps----~~ell~  284 (298)
T 3f66_A          274 EMRPS----FSELVS  284 (298)
T ss_dssp             GGSCC----HHHHHH
T ss_pred             hhCcC----HHHHHH
Confidence            99999    888775

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=3e-45  Score=355.00  Aligned_cols=251  Identities=25%  Similarity=0.359  Sum_probs=196.6

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH--cCCCCCceEEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--LDHPFLPTLYATLD  156 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~--l~H~nIv~l~~~~~  156 (457)
                      ...++|++.+.||+|+||+||+|.+      +++.||||++...      ....+..|.+++..  ++||||+++++++.
T Consensus         5 ~~~~~y~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~   72 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYGEVWRGSW------QGENVAVKIFSSR------DEKSWFRETELYNTVMLRHENILGFIASDM   72 (301)
T ss_dssp             CCGGGCEEEEEEEECSSEEEEEEEE------TTEEEEEEEECGG------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEE
T ss_pred             cccCcEEEEEeeccCCCcEEEEEEE------CCEEEEEEEeccc------cchhhHHHHHHHHHhhccCcCeeeEEEeec
Confidence            3456899999999999999999975      5788999999654      23445567787777  79999999999865


Q ss_pred             c----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH--------HcCceeecCCCCCeEEccC
Q 012762          157 C----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH--------MMGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       157 ~----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--------~~~iiHrDIKp~NIll~~~  224 (457)
                      .    ....|+||||+++|+|.++++.   ..+++..++.++.||+.||.|||        +.||+||||||+|||++.+
T Consensus        73 ~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~  149 (301)
T 3q4u_A           73 TSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKN  149 (301)
T ss_dssp             EEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTT
T ss_pred             cccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCC
Confidence            4    3468999999999999999865   57999999999999999999999        9999999999999999999


Q ss_pred             CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCC
Q 012762          225 GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTP  304 (457)
Q Consensus       225 ~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (457)
                      +.+||+|||+++.........                                                           
T Consensus       150 ~~~kl~Dfg~a~~~~~~~~~~-----------------------------------------------------------  170 (301)
T 3q4u_A          150 GQCCIADLGLAVMHSQSTNQL-----------------------------------------------------------  170 (301)
T ss_dssp             SCEEECCCTTCEEEETTTTEE-----------------------------------------------------------
T ss_pred             CCEEEeeCCCeeecccccccc-----------------------------------------------------------
Confidence            999999999986543221110                                                           


Q ss_pred             cccccCCccccccccCCCCccCchhhcCC------CCCccchhhhhhHHHHHHhcC----------CCCCCCCCh----H
Q 012762          305 EIVAEPLDVRSMSFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFELFYG----------TTPFKGIDH----E  364 (457)
Q Consensus       305 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~------~~~~~sDiwSlG~il~elltG----------~~Pf~~~~~----~  364 (457)
                             .......+||+.|+|||++.+.      .++.++|||||||++|||++|          ..||.....    .
T Consensus       171 -------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~  243 (301)
T 3q4u_A          171 -------DVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF  243 (301)
T ss_dssp             -------ECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             -------cccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcch
Confidence                   0011134699999999999877      345799999999999999999          889865422    2


Q ss_pred             HHHHHHHhcccCCCCCC------CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          365 LTLANVVARALEFPKEP------SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       365 ~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ......+......+..+      .++.++.+||.+||+.||++||+    +.+|++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~~i~~  295 (301)
T 3q4u_A          244 EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLT----ALRIKK  295 (301)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCC----HHHHHH
T ss_pred             hhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCC----HHHHHH
Confidence            22333332222222211      13357999999999999999999    888875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.7e-44  Score=348.94  Aligned_cols=256  Identities=18%  Similarity=0.280  Sum_probs=203.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE-EcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL-DCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~-~~~~  159 (457)
                      .++|++.+.||+|+||+||+|++.    .+++.||+|++....     ....+.+|+++++.++|++++..+.++ ...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~   78 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDI----AAGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGD   78 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEEESCS-----SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETT
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEc----CCCcEEEEEEecCCc-----chhHHHHHHHHHHHhhcCCCCCccccccCCCC
Confidence            368999999999999999999976    478999999986542     223577899999999988866555544 6677


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE---ccCCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV---RSDGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll---~~~~~vkl~DFG~s~  236 (457)
                      ..|+||||+ +++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||+   +.++.+||+|||++.
T Consensus        79 ~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  156 (296)
T 3uzp_A           79 YNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             ceEEEEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence            889999999 99999998754 3579999999999999999999999999999999999999   478899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ...........                                                               ......
T Consensus       157 ~~~~~~~~~~~---------------------------------------------------------------~~~~~~  173 (296)
T 3uzp_A          157 KYRDARTHQHI---------------------------------------------------------------PYRENK  173 (296)
T ss_dssp             ECBCTTTCCBC---------------------------------------------------------------CCCCSC
T ss_pred             ccccccccccc---------------------------------------------------------------cccccc
Confidence            55432111000                                                               000112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC---hHHHHHHHHhcccCCCC---CCCCChHHHHH
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID---HELTLANVVARALEFPK---EPSVPGPAKDL  390 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~l  390 (457)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||.+..   ....+..+.......+.   ...+++++.++
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  253 (296)
T 3uzp_A          174 NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATY  253 (296)
T ss_dssp             CCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHH
T ss_pred             ccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHH
Confidence            3469999999999999999999999999999999999999998743   22344444444333331   24588999999


Q ss_pred             HHHHhhhCCCCCCCCCcChHHHhc
Q 012762          391 IAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       391 l~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +.+||+.||++||+    +.+|++
T Consensus       254 i~~~l~~dp~~Rps----~~~l~~  273 (296)
T 3uzp_A          254 LNFCRSLRFDDKPD----YSYLRQ  273 (296)
T ss_dssp             HHHHHTSCTTCCCC----HHHHHH
T ss_pred             HHHHHhcCcCcCCC----HHHHHH
Confidence            99999999999999    666653

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=6.6e-45  Score=371.83  Aligned_cols=256  Identities=25%  Similarity=0.339  Sum_probs=195.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      +.|.+.+.||+|+||+||.+..     .+|+.||||++...      ....+.+|+++|+.+ +||||+++++++..++.
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~-----~~g~~vAvK~~~~~------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~   83 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGS-----FQGRPVAVKRMLID------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRF   83 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEE-----SSSSEEEEEEEEGG------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSE
T ss_pred             heeeccCeEeeCCCeEEEEEEE-----ECCeEEEEEEEcHH------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCe
Confidence            3466678899999999987543     36889999998653      234567799999876 89999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-----------
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKR-----FHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-----------  224 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~-----~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-----------  224 (457)
                      +||||||| +|+|.+++.......     ..+..++.++.||+.||.|||++||+||||||+|||++.+           
T Consensus        84 ~~lv~E~~-~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~  162 (434)
T 2rio_A           84 LYIALELC-NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGA  162 (434)
T ss_dssp             EEEEECCC-SEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCC
T ss_pred             EEEEEecC-CCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCC
Confidence            99999999 569999988642211     1233456799999999999999999999999999999754           


Q ss_pred             --CCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCC
Q 012762          225 --GHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPG  302 (457)
Q Consensus       225 --~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (457)
                        +.+||+|||+++.........                                                         
T Consensus       163 ~~~~~kL~DFG~a~~~~~~~~~~---------------------------------------------------------  185 (434)
T 2rio_A          163 ENLRILISDFGLCKKLDSGQSSF---------------------------------------------------------  185 (434)
T ss_dssp             CSCEEEECCCTTCEECCC--------------------------------------------------------------
T ss_pred             CceEEEEcccccceecCCCCccc---------------------------------------------------------
Confidence              489999999987654221100                                                         


Q ss_pred             CCcccccCCccccccccCCCCccCchhhcC-------CCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcc
Q 012762          303 TPEIVAEPLDVRSMSFVGTHEYLAPEIISG-------EGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARA  374 (457)
Q Consensus       303 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-------~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~  374 (457)
                               .......+||+.|+|||++.+       ..++.++|||||||++|||++ |..||.......  ..++...
T Consensus       186 ---------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~i~~~~  254 (434)
T 2rio_A          186 ---------RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE--SNIIRGI  254 (434)
T ss_dssp             ------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH--HHHHHTC
T ss_pred             ---------eeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH--HHHhcCC
Confidence                     000113469999999999976       568999999999999999998 999997654332  3444554


Q ss_pred             cCCCCCC-----CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          375 LEFPKEP-----SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       375 ~~~~~~~-----~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      ...+...     .++.++.+||.+||+.||.+||+    +.+|++||||...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps----~~eil~hp~f~~~  302 (434)
T 2rio_A          255 FSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPT----AMKVLRHPLFWPK  302 (434)
T ss_dssp             CCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCC----HHHHHTSGGGSCH
T ss_pred             CCcccccccccccchHHHHHHHHHHhhCChhhCCC----HHHHHhCCccCCc
Confidence            4444322     23467999999999999999999    9999999999753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3e-45  Score=365.77  Aligned_cols=248  Identities=18%  Similarity=0.196  Sum_probs=197.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEec-cCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC---CCCCceEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD---HPFLPTLYA  153 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~-~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~---H~nIv~l~~  153 (457)
                      .+..++|++.++||+|+||+||+|++.. .+..+++.||+|++...      ....+..|+++++.++   |+||+.+++
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~~~~l~~~~~~~iv~~~~  134 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA------NPWEFYIGTQLMERLKPSMQHMFMKFYS  134 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC------CHHHHHHHHHHHHHSCGGGGGGBCCEEE
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC------ChhHHHHHHHHHHHhhhhhhhhhhhhhe
Confidence            3455789999999999999999996433 13357889999999653      3445677888888886   999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-------
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQ---PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-------  223 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~---~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-------  223 (457)
                      ++...+..|||||||++|+|.+++...   ....+++..++.++.||+.||+|||++|||||||||+||||+.       
T Consensus       135 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~  214 (365)
T 3e7e_A          135 AHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDD  214 (365)
T ss_dssp             EEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC--
T ss_pred             eeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccc
Confidence            999999999999999999999998752   3467999999999999999999999999999999999999998       


Q ss_pred             ----CCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          224 ----DGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       224 ----~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                          ++.+||+|||+++.......                                                        
T Consensus       215 ~~~~~~~~kl~DFG~a~~~~~~~~--------------------------------------------------------  238 (365)
T 3e7e_A          215 EDDLSAGLALIDLGQSIDMKLFPK--------------------------------------------------------  238 (365)
T ss_dssp             ----CTTEEECCCTTCEEGGGSCT--------------------------------------------------------
T ss_pred             cccccCCEEEeeCchhhhhhccCC--------------------------------------------------------
Confidence                89999999999854321100                                                        


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                  .......+||+.|+|||++.+..|+.++|||||||++|||++|+.||.........     ....+..
T Consensus       239 ------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-----~~~~~~~  301 (365)
T 3e7e_A          239 ------------GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK-----PEGLFRR  301 (365)
T ss_dssp             ------------TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE-----ECSCCTT
T ss_pred             ------------CceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee-----echhccc
Confidence                        01112346999999999999999999999999999999999999999654321100     0001111


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~  405 (457)
                       ...++.+.+++..||..+|.+|++.
T Consensus       302 -~~~~~~~~~~~~~~l~~~p~~r~~~  326 (365)
T 3e7e_A          302 -LPHLDMWNEFFHVMLNIPDCHHLPS  326 (365)
T ss_dssp             -CSSHHHHHHHHHHHHCCCCTTCCCC
T ss_pred             -cCcHHHHHHHHHHHcCCCCCCcchH
Confidence             1245678999999999999999873

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.1e-44  Score=386.23  Aligned_cols=258  Identities=20%  Similarity=0.284  Sum_probs=209.9

Q ss_pred             ccCCCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           79 LTLSDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      +....+.+. ++||+|+||+||+|.+...  ..++.||||+++... ........+.+|+++|++++|||||++++++..
T Consensus       365 ~~~~~~~l~~~~LG~G~fG~Vy~~~~~~~--~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~  441 (635)
T 4fl3_A          365 LDRKLLTLEDKELGSGNFGTVKKGYYQMK--KVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEA  441 (635)
T ss_dssp             CCGGGEEEEEEEEEECSSEEEEEEEEECS--SCEEEEEEEEECGGG-GCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred             ccchhccccCCEeccCCCEEEEEEEEcCC--CcceEEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            344445554 4899999999999976532  467899999997653 233446778899999999999999999999975


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                       +..+||||||++|+|.+++...  ..+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+++.
T Consensus       442 -~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~  518 (635)
T 4fl3_A          442 -ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  518 (635)
T ss_dssp             -SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHH
T ss_pred             -CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccc
Confidence             5688999999999999999775  6799999999999999999999999999999999999999999999999999875


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                   .....
T Consensus       519 ~~~~~~~~-------------------------------------------------------------------~~~~~  531 (635)
T 4fl3_A          519 LRADENYY-------------------------------------------------------------------KAQTH  531 (635)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cccCcccc-------------------------------------------------------------------ccccC
Confidence            53221100                                                                   00011


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..||+.|+|||++.+..++.++|||||||++|||++ |+.||.+....+....+..+ ...+....++.++.+||.+||.
T Consensus       532 ~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~  610 (635)
T 4fl3_A          532 GKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG-ERMGCPAGCPREMYDLMNLCWT  610 (635)
T ss_dssp             ---CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTC
T ss_pred             CCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcC
Confidence            247889999999999999999999999999999998 99999998877666655443 3455556799999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +.+|++
T Consensus       611 ~dP~~RPs----~~~l~~  624 (635)
T 4fl3_A          611 YDVENRPG----FAAVEL  624 (635)
T ss_dssp             SSTTTSCC----HHHHHH
T ss_pred             CCHhHCcC----HHHHHH
Confidence            99999999    777764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.3e-46  Score=367.52  Aligned_cols=259  Identities=22%  Similarity=0.267  Sum_probs=204.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.+.||+|+||+||+|.+.     +++.||||++......  .....+.+|+++++.++||||+++++++...
T Consensus        27 ~~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~   99 (326)
T 3uim_A           27 VASDNFSNKNILGRGGFGKVYKGRLA-----DGTLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTP   99 (326)
T ss_dssp             TTTTSSCSTTEEECCSSSEEEEECCS-----SSCCEEEEECCC-------CCCHHHHHHHGGGTCCCTTBCCCCEEECCS
T ss_pred             HHhhccccceeEecCCCcEEEEEEec-----CCCEEEEEEeccccCc--hHHHHHHHHHHHHHhccCCCccceEEEEecC
Confidence            34568999999999999999999753     6889999999765322  1223578899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHc---CceeecCCCCCeEEccCCCEEEeccC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQP--DKRFHESAVRFYASEVVVALEFLHMM---GIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~--~~~~~~~~~~~i~~qi~~~L~yLH~~---~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      +..++||||+++++|.+++....  ...+++..+..++.||+.||.|||++   ||+||||||+|||++.++.+||+|||
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg  179 (326)
T 3uim_A          100 TERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFG  179 (326)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCS
T ss_pred             CceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCc
Confidence            99999999999999999988753  23499999999999999999999999   99999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      ++.........                                                                     
T Consensus       180 ~~~~~~~~~~~---------------------------------------------------------------------  190 (326)
T 3uim_A          180 LAKLMDYKDTH---------------------------------------------------------------------  190 (326)
T ss_dssp             SCEECCSSSSC---------------------------------------------------------------------
T ss_pred             cccccCccccc---------------------------------------------------------------------
Confidence            98654321110                                                                     


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCC----ChHHHHHHHHhcccCCCC----------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGI----DHELTLANVVARALEFPK----------  379 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~----~~~~~~~~~~~~~~~~~~----------  379 (457)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|+.||...    .........+........          
T Consensus       191 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 3uim_A          191 VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQ  270 (326)
T ss_dssp             EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCT
T ss_pred             ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhc
Confidence            111235999999999999888999999999999999999999999521    111112222222111110          


Q ss_pred             ---CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCC
Q 012762          380 ---EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQF  417 (457)
Q Consensus       380 ---~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~  417 (457)
                         ....+..+.+++.+||+.||.+||+    +.+|++|-.
T Consensus       271 ~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~ell~~L~  307 (326)
T 3uim_A          271 GNYKDEEVEQLIQVALLCTQSSPMERPK----MSEVVRMLE  307 (326)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSCGGGSCC----HHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhCcCCccCCC----HHHHHHHhc
Confidence               0112256899999999999999999    999988743

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-45  Score=366.67  Aligned_cols=259  Identities=15%  Similarity=0.234  Sum_probs=202.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE-cCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD-CPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~-~~~~  160 (457)
                      ..|++.+.||+|+||+||+|++...+ ..+..||+|++...  ........+.+|++++++++||||+++++++. .++.
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~  165 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS  165 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETT-TEEEEEEEEECCSC--SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSC
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCC-CcEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCC
Confidence            35888999999999999999976421 23457899998643  23345677888999999999999999999864 4567


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|+||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....
T Consensus       166 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          166 PLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             CEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             eEEEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccc
Confidence            89999999999999998754 35689999999999999999999999999999999999999999999999999865432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      .....                                                                  ........|
T Consensus       245 ~~~~~------------------------------------------------------------------~~~~~~~~~  258 (373)
T 3c1x_A          245 KEFDS------------------------------------------------------------------VHNKTGAKL  258 (373)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ccccc------------------------------------------------------------------ccccCCCCC
Confidence            11100                                                                  000112347


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      |+.|+|||++.+..++.++|||||||++|||++ |.+||.+....+....+.... ....+..++..+.++|.+||..||
T Consensus       259 ~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~li~~cl~~dp  337 (373)
T 3c1x_A          259 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR-RLLQPEYCPDPLYEVMLKCWHPKA  337 (373)
T ss_dssp             CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTC-CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHcCCCh
Confidence            889999999999999999999999999999999 788888776655555554433 334445689999999999999999


Q ss_pred             CCCCCCCcChHHHhcC
Q 012762          400 TRRMGSKMGATAIKRH  415 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~h  415 (457)
                      ++||+    +.+++++
T Consensus       338 ~~RPs----~~ell~~  349 (373)
T 3c1x_A          338 EMRPS----FSELVSR  349 (373)
T ss_dssp             GGSCC----HHHHHHH
T ss_pred             hhCcC----HHHHHHH
Confidence            99999    8887764

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=5.8e-45  Score=349.87  Aligned_cols=245  Identities=22%  Similarity=0.352  Sum_probs=205.1

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----  157 (457)
                      .+|++++.||+|+||+||+|.++    .+++.||+|++....       ..+.+|+++++.++||||+++++++..    
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   79 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHR----IDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYD   79 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEET----TTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC
T ss_pred             cccceeeeeccCCceEEEEEEEc----CCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccC
Confidence            47999999999999999999986    378899999997542       245679999999999999999998864    


Q ss_pred             ------------CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC
Q 012762          158 ------------PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG  225 (457)
Q Consensus       158 ------------~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~  225 (457)
                                  ...+|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus        80 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  159 (284)
T 2a19_B           80 PETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTK  159 (284)
T ss_dssp             ---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT
T ss_pred             cccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCC
Confidence                        44589999999999999999876557799999999999999999999999999999999999999999


Q ss_pred             CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCc
Q 012762          226 HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE  305 (457)
Q Consensus       226 ~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (457)
                      .+||+|||++........                                                              
T Consensus       160 ~~kl~Dfg~~~~~~~~~~--------------------------------------------------------------  177 (284)
T 2a19_B          160 QVKIGDFGLVTSLKNDGK--------------------------------------------------------------  177 (284)
T ss_dssp             EEEECCCTTCEESSCCSC--------------------------------------------------------------
T ss_pred             CEEECcchhheecccccc--------------------------------------------------------------
Confidence            999999999765432110                                                              


Q ss_pred             ccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                               .....||+.|+|||++.+..++.++|||||||++|+|++|..||...  ......+....    ....++.
T Consensus       178 ---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~  242 (284)
T 2a19_B          178 ---------RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--SKFFTDLRDGI----ISDIFDK  242 (284)
T ss_dssp             ---------CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--HHHHHHHHTTC----CCTTSCH
T ss_pred             ---------ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--HHHHHHhhccc----ccccCCH
Confidence                     01235899999999999999999999999999999999999987532  22222222221    2245889


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      .+.++|.+||..||.+||+    +.|+++|.+.
T Consensus       243 ~~~~li~~~l~~dp~~Rps----~~e~l~~l~~  271 (284)
T 2a19_B          243 KEKTLLQKLLSKKPEDRPN----TSEILRTLTV  271 (284)
T ss_dssp             HHHHHHHHHTCSSGGGSCC----HHHHHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcC----HHHHHHHHHH
Confidence            9999999999999999999    9999998653

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-45  Score=373.99  Aligned_cols=260  Identities=22%  Similarity=0.308  Sum_probs=198.5

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC  157 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~  157 (457)
                      +...+|.+.+.||+|+||+||....     .+++.||||++.....      ..+.+|+++|+.+ +||||+++++++.+
T Consensus        21 i~~~~y~~~~~LG~G~~G~V~~~~~-----~~~~~vAvK~~~~~~~------~~~~~E~~~l~~l~~HpnIv~l~~~~~~   89 (432)
T 3p23_A           21 VGKISFCPKDVLGHGAEGTIVYRGM-----FDNRDVAVKRILPECF------SFADREVQLLRESDEHPNVIRYFCTEKD   89 (432)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEE-----SSSSEEEEEEECTTTE------EECHHHHHHHHHSCCCTTBCCEEEEEEE
T ss_pred             EccEEEecCCeeecCcCEEEEEEEE-----eCCeEEEEEEECHHHH------HHHHHHHHHHHhccCCCCcCeEEEEEec
Confidence            3445699999999999999764332     3688999999965422      1245699999999 79999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---C--CCEEEecc
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---D--GHIMLTDF  232 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~--~~vkl~DF  232 (457)
                      .+..||||||| +|+|.+++.... ..+.+..++.++.||+.||.|||++||+||||||+||||+.   +  ..+||+||
T Consensus        90 ~~~~~lv~E~~-~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DF  167 (432)
T 3p23_A           90 RQFQYIAIELC-AATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDF  167 (432)
T ss_dssp             TTEEEEEEECC-SEEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCT
T ss_pred             CCEEEEEEECC-CCCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecc
Confidence            99999999999 569998887653 34555567889999999999999999999999999999953   2  35889999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++.........                                                                   
T Consensus       168 G~a~~~~~~~~~~-------------------------------------------------------------------  180 (432)
T 3p23_A          168 GLCKKLAVGRHSF-------------------------------------------------------------------  180 (432)
T ss_dssp             TEEECC--------------------------------------------------------------------------
T ss_pred             cceeeccCCCcce-------------------------------------------------------------------
Confidence            9986554211100                                                                   


Q ss_pred             cccccccCCCCccCchhhcC---CCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCC---CCCCCh
Q 012762          313 VRSMSFVGTHEYLAPEIISG---EGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPK---EPSVPG  385 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~---~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~---~~~~~~  385 (457)
                      ......+||+.|+|||++.+   ..++.++|||||||++|||++ |..||.........  ++........   ....+.
T Consensus       181 ~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  258 (432)
T 3p23_A          181 SRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN--ILLGACSLDCLHPEKHEDV  258 (432)
T ss_dssp             -----CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH--HHTTCCCCTTSCTTCHHHH
T ss_pred             eeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH--HHhccCCccccCccccccH
Confidence            01113469999999999984   557889999999999999999 99999765443322  2222222211   112234


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      .+.+||.+||+.||.+||+    +.+|++||||..++|.
T Consensus       259 ~~~~li~~~L~~dP~~Rps----~~evl~hp~f~~~~~~  293 (432)
T 3p23_A          259 IARELIEKMIAMDPQKRPS----AKHVLKHPFFWSLEKQ  293 (432)
T ss_dssp             HHHHHHHHHSCSSGGGSCC----HHHHHTSTTTCCHHHH
T ss_pred             HHHHHHHHHHhCCHhhCCC----HHHHHhCccccChHHH
Confidence            5889999999999999999    9999999999998884

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-45  Score=362.12  Aligned_cols=258  Identities=15%  Similarity=0.192  Sum_probs=201.6

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCC----CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCce------
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSS----NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPT------  150 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~----~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~------  150 (457)
                      .++|++.+.||+|+||+||+|+++....    ..++.||+|++.+.        ..+.+|++++++++||||++      
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~  112 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLY  112 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhc
Confidence            4789999999999999999999863110    13789999999754        34677999999999999887      


Q ss_pred             ---------EEEEEEc-CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeE
Q 012762          151 ---------LYATLDC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL  220 (457)
Q Consensus       151 ---------l~~~~~~-~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIl  220 (457)
                               +++++.. ++..||||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||
T Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl  191 (352)
T 2jii_A          113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF  191 (352)
T ss_dssp             TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE
T ss_pred             cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence                     6777765 67889999999 999999998765577999999999999999999999999999999999999


Q ss_pred             EccCC--CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          221 VRSDG--HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       221 l~~~~--~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      ++.++  .+||+|||+++...........                                                   
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~---------------------------------------------------  220 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAY---------------------------------------------------  220 (352)
T ss_dssp             EETTEEEEEEECCGGGCBCSSGGGCCCCC---------------------------------------------------
T ss_pred             EcCCCCceEEEecCcceeeccCCCccccc---------------------------------------------------
Confidence            99988  8999999998765422110000                                                   


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCC-hHHHHHHHHh----c
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGID-HELTLANVVA----R  373 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~-~~~~~~~~~~----~  373 (457)
                                  .........||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....+.....    .
T Consensus       221 ------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  288 (352)
T 2jii_A          221 ------------VEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDK  288 (352)
T ss_dssp             ------------CTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHS
T ss_pred             ------------cccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCC
Confidence                        0001113469999999999999999999999999999999999999998754 2222222221    1


Q ss_pred             ccCCCC----CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          374 ALEFPK----EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       374 ~~~~~~----~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ...+..    ...++.++.+||.+||..||++||+    +.+|++
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps----~~~l~~  329 (352)
T 2jii_A          289 PGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPP----YAMLRN  329 (352)
T ss_dssp             CCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCC----HHHHHH
T ss_pred             hhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCC----HHHHHH
Confidence            111111    1246899999999999999999999    777653

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.4e-46  Score=373.67  Aligned_cols=254  Identities=24%  Similarity=0.387  Sum_probs=203.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++.++||+|+||+||+|+++    .+++.||||++.....  ......+.+|+++|++++||||+++++++...+
T Consensus         7 ~~~~y~i~~~LG~G~~g~Vy~~~~~----~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~   80 (396)
T 4eut_A            7 SNHLWLLSDILGQGATANVFRGRHK----KTGDLFAIKVFNNISF--LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT   80 (396)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECGGGG--GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT
T ss_pred             CCCceEEEEEEEcCCCeEEEEEEEC----CCCcEEEEEEeccccc--cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCC
Confidence            3468999999999999999999987    4788999999976533  233566778999999999999999999998765


Q ss_pred             --cEEEEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEE----ccCCCEEEecc
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLV----RSDGHIMLTDF  232 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll----~~~~~vkl~DF  232 (457)
                        ..|+|||||++++|.+++.... ...+++..++.++.||+.||.|||++||+||||||+|||+    +.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DF  160 (396)
T 4eut_A           81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDF  160 (396)
T ss_dssp             TCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCG
T ss_pred             CCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecC
Confidence              7899999999999999887642 2349999999999999999999999999999999999999    67778999999


Q ss_pred             CCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCc
Q 012762          233 DLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD  312 (457)
Q Consensus       233 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (457)
                      |+++......                                                                      
T Consensus       161 G~a~~~~~~~----------------------------------------------------------------------  170 (396)
T 4eut_A          161 GAARELEDDE----------------------------------------------------------------------  170 (396)
T ss_dssp             GGCEECCCGG----------------------------------------------------------------------
T ss_pred             CCceEccCCC----------------------------------------------------------------------
Confidence            9986543211                                                                      


Q ss_pred             cccccccCCCCccCchhhcC--------CCCCccchhhhhhHHHHHHhcCCCCCCCCC----hHHHHHHHHhcccC----
Q 012762          313 VRSMSFVGTHEYLAPEIISG--------EGHGNAVDWWTLGIFIFELFYGTTPFKGID----HELTLANVVARALE----  376 (457)
Q Consensus       313 ~~~~~~~gt~~y~aPE~l~~--------~~~~~~sDiwSlG~il~elltG~~Pf~~~~----~~~~~~~~~~~~~~----  376 (457)
                       .....+||+.|+|||++.+        ..++.++|||||||++|||++|+.||....    ....+..++.+...    
T Consensus       171 -~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~  249 (396)
T 4eut_A          171 -QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAIS  249 (396)
T ss_dssp             -GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCE
T ss_pred             -ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccch
Confidence             0113469999999999875        457889999999999999999999997532    33445555543221    


Q ss_pred             ---------------CCCCCC----CChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          377 ---------------FPKEPS----VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       377 ---------------~~~~~~----~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                                     ++....    ++..+.++|.+||..||++||+    +.++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s----~~e~l~  302 (396)
T 4eut_A          250 GVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWG----FDQFFA  302 (396)
T ss_dssp             EEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCC----HHHHHH
T ss_pred             hheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhcc----HHHHHH
Confidence                           111111    2346889999999999999999    777643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=354.83  Aligned_cols=263  Identities=21%  Similarity=0.309  Sum_probs=213.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++++.||+|+||+||+|++...+..+++.||+|++...   .......+.+|+++|+.++||||+++++++.
T Consensus        36 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  112 (326)
T 2w1i_A           36 TQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---TEEHLRDFEREIEILKSLQHDNIVKYKGVCY  112 (326)
T ss_dssp             -CCCGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC---CSHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             cccCHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEE
Confidence            4556678999999999999999999876555568999999999753   2344567888999999999999999999986


Q ss_pred             cCC--cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          157 CPR--WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       157 ~~~--~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      ..+  ..++||||+++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+
T Consensus       113 ~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~  191 (326)
T 2w1i_A          113 SAGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGL  191 (326)
T ss_dssp             C----CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred             ecCCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcc
Confidence            654  7899999999999999998753 4699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +...........                                                                   .
T Consensus       192 ~~~~~~~~~~~~-------------------------------------------------------------------~  204 (326)
T 2w1i_A          192 TKVLPQDKEYYK-------------------------------------------------------------------V  204 (326)
T ss_dssp             CEECCSSCSEEE-------------------------------------------------------------------C
T ss_pred             hhhccccccccc-------------------------------------------------------------------c
Confidence            865542211100                                                                   0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH---------------HHHHHHHhcccCCCC
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE---------------LTLANVVARALEFPK  379 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~---------------~~~~~~~~~~~~~~~  379 (457)
                      .....|+..|+|||++.+..++.++|||||||++|||++|..||......               ..+...+......+.
T Consensus       205 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (326)
T 2w1i_A          205 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR  284 (326)
T ss_dssp             SSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCC
T ss_pred             ccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCC
Confidence            00124788899999999888999999999999999999999998643111               012233333444555


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ...++.++.+||.+||..||++||+    +.+|++
T Consensus       285 ~~~~~~~l~~li~~cl~~dP~~Rps----~~el~~  315 (326)
T 2w1i_A          285 PDGCPDEIYMIMTECWNNNVNQRPS----FRDLAL  315 (326)
T ss_dssp             CTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHH
T ss_pred             CCcccHHHHHHHHHHcCCChhhCcC----HHHHHH
Confidence            6678999999999999999999999    888875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.3e-44  Score=353.57  Aligned_cols=266  Identities=22%  Similarity=0.331  Sum_probs=208.3

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE-
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD-  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~-  156 (457)
                      .+..++|++.+.||+|+||+||+|.++    .+++.||||++...   .......+.+|+++++.++||||+++++++. 
T Consensus        25 ~i~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   97 (317)
T 2buj_A           25 IIDNKHYLFIQKLGEGGFSYVDLVEGL----HDGHFYALKRILCH---EQQDREEAQREADMHRLFNHPNILRLVAYCLR   97 (317)
T ss_dssp             EETTEEEEEEEEEEC--CEEEEEEEET----TTCCEEEEEEEEES---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE
T ss_pred             EECCeEEEEEEEecCCCCeEEEEEEec----CCCcEEEEEEEecC---CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEe
Confidence            345678999999999999999999986    47889999998653   2245567888999999999999999999986 


Q ss_pred             ---cCCcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          157 ---CPRWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       157 ---~~~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                         .....|+||||+.+++|.+++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|
T Consensus        98 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~d  177 (317)
T 2buj_A           98 ERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMD  177 (317)
T ss_dssp             EETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECC
T ss_pred             ccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEe
Confidence               334789999999999999888762  346799999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||++............                                                             ...
T Consensus       178 fg~~~~~~~~~~~~~~-------------------------------------------------------------~~~  196 (317)
T 2buj_A          178 LGSMNQACIHVEGSRQ-------------------------------------------------------------ALT  196 (317)
T ss_dssp             CSSCEESCEEEESHHH-------------------------------------------------------------HHH
T ss_pred             cCcchhcccccccccc-------------------------------------------------------------ccc
Confidence            9987543211000000                                                             000


Q ss_pred             ccccccccCCCCccCchhhcCCC---CCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhcccCCCCCCCCChHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEG---HGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARALEFPKEPSVPGPA  387 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~---~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  387 (457)
                      ........||+.|+|||++.+..   ++.++|||||||++|+|++|+.||..... .......+......+....++.++
T Consensus       197 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (317)
T 2buj_A          197 LQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSAL  276 (317)
T ss_dssp             HHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHH
T ss_pred             ccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHH
Confidence            00011235899999999998664   68899999999999999999999964211 112223333455566666789999


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+||.+||..||.+||+    +.+++++
T Consensus       277 ~~li~~~l~~dp~~Rps----~~~ll~~  300 (317)
T 2buj_A          277 WQLLNSMMTVDPHQRPH----IPLLLSQ  300 (317)
T ss_dssp             HHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHhhcChhhCCC----HHHHHHH
Confidence            99999999999999999    9999886

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-44  Score=354.24  Aligned_cols=250  Identities=22%  Similarity=0.337  Sum_probs=194.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc--CCCCCceEEEEEEcC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML--DHPFLPTLYATLDCP  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l--~H~nIv~l~~~~~~~  158 (457)
                      .++|++.+.||+|+||+||+|++      .++.||||++...      .......|.+++..+  +||||+++++++...
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~------~~~~vavK~~~~~------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~  103 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKW------RGEKVAVKVFFTT------EEASWFRETEIYQTVLMRHENILGFIAADIKG  103 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEE------TTEEEEEEEEEGG------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEES
T ss_pred             ccceEEEeEeecCCCeEEEEEEE------CCceEEEEEEecc------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccC
Confidence            35899999999999999999986      4789999998653      223344566666554  899999999999877


Q ss_pred             ----CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc--------CceeecCCCCCeEEccCCC
Q 012762          159 ----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM--------GIIYRDLKPENVLVRSDGH  226 (457)
Q Consensus       159 ----~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~--------~iiHrDIKp~NIll~~~~~  226 (457)
                          ...|+||||+++++|.++++.   ..+++..++.++.||+.||.|||+.        ||+||||||+|||++.++.
T Consensus       104 ~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~  180 (337)
T 3mdy_A          104 TGSWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGT  180 (337)
T ss_dssp             CGGGCEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred             CCCCCceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCC
Confidence                688999999999999999977   4699999999999999999999998        9999999999999999999


Q ss_pred             EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcc
Q 012762          227 IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI  306 (457)
Q Consensus       227 vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (457)
                      +||+|||+++.........                                                             
T Consensus       181 ~kl~Dfg~a~~~~~~~~~~-------------------------------------------------------------  199 (337)
T 3mdy_A          181 CCIADLGLAVKFISDTNEV-------------------------------------------------------------  199 (337)
T ss_dssp             EEECCCTTCEECC-------------------------------------------------------------------
T ss_pred             EEEEeCCCceeeccccccc-------------------------------------------------------------
Confidence            9999999986553221110                                                             


Q ss_pred             cccCCccccccccCCCCccCchhhcCCCCCcc------chhhhhhHHHHHHhcC----------CCCCCCCCh----HHH
Q 012762          307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNA------VDWWTLGIFIFELFYG----------TTPFKGIDH----ELT  366 (457)
Q Consensus       307 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~------sDiwSlG~il~elltG----------~~Pf~~~~~----~~~  366 (457)
                           .......+||+.|+|||++.+..+...      +|||||||++|||++|          +.||.....    ...
T Consensus       200 -----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~  274 (337)
T 3mdy_A          200 -----DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYED  274 (337)
T ss_dssp             --------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred             -----cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhh
Confidence                 000113469999999999988776655      9999999999999999          777765321    122


Q ss_pred             HHHHHh-cccCCCCC-----CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          367 LANVVA-RALEFPKE-----PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       367 ~~~~~~-~~~~~~~~-----~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ....+. ........     ..++.++.+||.+||+.||++||+    +.+|++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps----~~ell~~  325 (337)
T 3mdy_A          275 MREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLT----ALRVKKT  325 (337)
T ss_dssp             HHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCC----HHHHHHH
T ss_pred             hHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCC----HHHHHHH
Confidence            222222 22221111     134456999999999999999999    9998876

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-44  Score=353.60  Aligned_cols=264  Identities=24%  Similarity=0.302  Sum_probs=190.2

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~  156 (457)
                      .+...+|++.++||+|+||+||+|+++    .+++.||+|++....   ......+.+|+.+++++. ||||+++++++.
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~   96 (337)
T 3ll6_A           24 ELGELRLRVRRVLAEGGFAFVYEAQDV----GSGREYALKRLLSNE---EEKNRAIIQEVCFMKKLSGHPNIVQFCSAAS   96 (337)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEEET----TTCCEEEEEEEEESS---HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEE
T ss_pred             eccCceEEEEEEEccCCceEEEEEEEC----CCCcEEEEEEecCCc---hHHHHHHHHHHHHHHHhccCCChhhcccccc
Confidence            344458999999999999999999986    478899999986542   234566788999999995 999999999994


Q ss_pred             --------cCCcEEEEEeecCCCChHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEccCC
Q 012762          157 --------CPRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVRSDG  225 (457)
Q Consensus       157 --------~~~~~~lV~E~~~~~sL~~~~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~~~~  225 (457)
                              ....+++||||+ +|+|.+++.. ...+.+++..++.++.||+.||.|||+.|  |+||||||+|||++.++
T Consensus        97 ~~~~~~~~~~~~~~lv~e~~-~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~  175 (337)
T 3ll6_A           97 IGKEESDTGQAEFLLLTELC-KGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQG  175 (337)
T ss_dssp             ECTTTSTTSSEEEEEEEECC-SEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTS
T ss_pred             ccccccccCCceEEEEEEec-CCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCC
Confidence                    334579999999 5788877764 23467999999999999999999999999  99999999999999999


Q ss_pred             CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCc
Q 012762          226 HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE  305 (457)
Q Consensus       226 ~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (457)
                      .+||+|||+++............                                                         
T Consensus       176 ~~kl~Dfg~~~~~~~~~~~~~~~---------------------------------------------------------  198 (337)
T 3ll6_A          176 TIKLCDFGSATTISHYPDYSWSA---------------------------------------------------------  198 (337)
T ss_dssp             CEEBCCCTTCBCCSSCC---------------------------------------------------------------
T ss_pred             CEEEecCccceeccccCcccccc---------------------------------------------------------
Confidence            99999999987654321110000                                                         


Q ss_pred             ccccCCccccccccCCCCccCchhh---cCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCC
Q 012762          306 IVAEPLDVRSMSFVGTHEYLAPEII---SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS  382 (457)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~y~aPE~l---~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  382 (457)
                       .............||+.|+|||++   .+..++.++|||||||++|+|++|+.||......    .++......+....
T Consensus       199 -~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~  273 (337)
T 3ll6_A          199 -QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL----RIVNGKYSIPPHDT  273 (337)
T ss_dssp             --------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----------------CCCCTTCC
T ss_pred             -cccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH----HhhcCcccCCcccc
Confidence             000000111234699999999999   5666899999999999999999999999765443    23344455555566


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          383 VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       383 ~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+..+.+||.+||+.||++||+    +.|+++|
T Consensus       274 ~~~~~~~li~~~l~~~p~~Rps----~~e~l~~  302 (337)
T 3ll6_A          274 QYTVFHSLIRAMLQVNPEERLS----IAEVVHQ  302 (337)
T ss_dssp             SSGGGHHHHHHHSCSSGGGSCC----HHHHHHH
T ss_pred             cchHHHHHHHHHccCChhhCcC----HHHHHHH
Confidence            7889999999999999999999    9999887

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.3e-44  Score=349.42  Aligned_cols=233  Identities=27%  Similarity=0.416  Sum_probs=189.8

Q ss_pred             cCCCceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHH-HHcCCCCCceEEEEEEc
Q 012762           80 TLSDLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL-EMLDHPFLPTLYATLDC  157 (457)
Q Consensus        80 ~~~~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il-~~l~H~nIv~l~~~~~~  157 (457)
                      ..++|.+. +.||+|+||+||+|.++    .+++.||+|++...        ..+.+|++++ +.++||||+++++++..
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~----~~~~~vaiK~~~~~--------~~~~~e~~~~~~~~~h~~i~~~~~~~~~   82 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNK----RTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYEN   82 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             cccchhhcCcccccCCCeEEEEEEEc----CCCcEEEEEEeccc--------HHHHHHHHHHHHhccCCCchhHHhhhhh
Confidence            44678887 78999999999999986    47889999999642        2455688887 55699999999999976


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEe
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLT  230 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~  230 (457)
                          ....|+||||+++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.   ++.+||+
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~  162 (299)
T 3m2w_A           83 LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLT  162 (299)
T ss_dssp             EETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred             hcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEe
Confidence                678899999999999999998876668999999999999999999999999999999999999998   7899999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++....                                                                       
T Consensus       163 Dfg~a~~~~-----------------------------------------------------------------------  171 (299)
T 3m2w_A          163 DFGFAKETT-----------------------------------------------------------------------  171 (299)
T ss_dssp             CCTTCEECT-----------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            999864221                                                                       


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHh----cccCCCC--CCCCC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA----RALEFPK--EPSVP  384 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~----~~~~~~~--~~~~~  384 (457)
                                           +..++.++|||||||++|||++|+.||.+.........+..    ....++.  ...++
T Consensus       172 ---------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (299)
T 3m2w_A          172 ---------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVS  230 (299)
T ss_dssp             ---------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSC
T ss_pred             ---------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCC
Confidence                                 23467899999999999999999999987544332211111    1111111  13578


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .++.+||.+||..||++||+    +.|+++||||+.
T Consensus       231 ~~~~~li~~~l~~dP~~Rps----~~e~l~hp~~~~  262 (299)
T 3m2w_A          231 EEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  262 (299)
T ss_dssp             HHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHT
T ss_pred             HHHHHHHHHHcccChhhCCC----HHHHhcChhhcc
Confidence            89999999999999999999    999999999985

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=4.8e-44  Score=352.40  Aligned_cols=263  Identities=25%  Similarity=0.331  Sum_probs=193.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHH--HHcCCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL--EMLDHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il--~~l~H~nIv~l~~~  154 (457)
                      ..+..++|++++.||+|+||+||+|.+      +++.||||++....      ...+..|.+++  ..++|+||++++++
T Consensus         8 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~------~~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~   75 (336)
T 3g2f_A            8 PSLDLDNLKLLELIGRGRYGAVYKGSL------DERPVAVKVFSFAN------RQNFINEKNIYRVPLMEHDNIARFIVG   75 (336)
T ss_dssp             -CCCTTSEEEEEEEEECSSEEEEEEEE------TTEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEE
T ss_pred             CCcChHHhheeeecccCCCeEEEEEEE------CCeEEEEEEeeccc------hhhHHHHHHHHHHHhccCcchhhheec
Confidence            456788999999999999999999975      57899999997542      22333455554  45899999999986


Q ss_pred             EEc-----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc---------CceeecCCCCCeE
Q 012762          155 LDC-----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---------GIIYRDLKPENVL  220 (457)
Q Consensus       155 ~~~-----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---------~iiHrDIKp~NIl  220 (457)
                      +..     ...+|||||||++|+|.+++..   ...++..+..++.||+.||.|||+.         ||+||||||+|||
T Consensus        76 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nil  152 (336)
T 3g2f_A           76 DERVTADGRMEYLLVMEYYPNGSLXKYLSL---HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL  152 (336)
T ss_dssp             EEEECTTSCEEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEE
T ss_pred             ccccccCCCceEEEEEecCCCCcHHHHHhh---cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEE
Confidence            532     2357899999999999999977   4468999999999999999999999         9999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                      |+.++.+||+|||+++...........                                                     
T Consensus       153 l~~~~~~kL~DFG~a~~~~~~~~~~~~-----------------------------------------------------  179 (336)
T 3g2f_A          153 VKNDGTCVISDFGLSMRLTGNRLVRPG-----------------------------------------------------  179 (336)
T ss_dssp             ECTTSCEEECCCTTCEECSSSSCC--------------------------------------------------------
T ss_pred             EcCCCcEEEeeccceeecccccccCcc-----------------------------------------------------
Confidence            999999999999998765422111000                                                     


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcC-------CCCCccchhhhhhHHHHHHhcCCCCCCCCCh----------
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG-------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDH----------  363 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~----------  363 (457)
                               .........+||+.|+|||++.+       ..++.++|||||||++|||++|..||.....          
T Consensus       180 ---------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~  250 (336)
T 3g2f_A          180 ---------EEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQT  250 (336)
T ss_dssp             ---------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHH
T ss_pred             ---------ccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhc
Confidence                     00011123469999999999987       3456789999999999999999776643211          


Q ss_pred             -------HHHHHHHHhcccCCCC-CCC------CChHHHHHHHHHhhhCCCCCCCCCcChHHH------hcCCCCCC
Q 012762          364 -------ELTLANVVARALEFPK-EPS------VPGPAKDLIAQLLVKDPTRRMGSKMGATAI------KRHQFFNG  420 (457)
Q Consensus       364 -------~~~~~~~~~~~~~~~~-~~~------~~~~~~~ll~~~L~~dP~~Rps~~~~~~~l------l~hp~f~~  420 (457)
                             .......+......+. ...      ++.++.+||.+||..||++||+    +.|+      +.++|-++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps----~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          251 EVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLT----AQXAEERMAELMMIWERN  323 (336)
T ss_dssp             HHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCC----HHHHHHHHHHHHHCCCC-
T ss_pred             ccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcc----hHHHHHHHHHHHHHHHhc
Confidence                   1111122222111111 111      2336999999999999999999    8888      44566554

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=1e-44  Score=354.41  Aligned_cols=261  Identities=20%  Similarity=0.239  Sum_probs=210.2

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..+.+..++|++.+.||+|+||+||+|.+..       .||+|++..... .......+.+|+++++.++|+||++++++
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~-------~~avk~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   97 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG-------EVAIRLIDIERD-NEDQLKAFKREVMAYRQTRHENVVLFMGA   97 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS-------SEEEEECCCCSC-CCCCCCCCCTTGGGGTTCCCTTBCCCCEE
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC-------eEEEEEeecCCC-CHHHHHHHHHHHHHHhcCCCCCEeEEEEE
Confidence            4567788999999999999999999998642       499999875432 12233456679999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +...+..++||||+++++|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||+
T Consensus        98 ~~~~~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~  175 (319)
T 2y4i_B           98 CMSPPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGL  175 (319)
T ss_dssp             EECSSCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSC
T ss_pred             EecCCceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCC
Confidence            99999999999999999999988664 34699999999999999999999999999999999999998 78999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +..........                                                                 ....
T Consensus       176 ~~~~~~~~~~~-----------------------------------------------------------------~~~~  190 (319)
T 2y4i_B          176 FSISGVLQAGR-----------------------------------------------------------------REDK  190 (319)
T ss_dssp             CC---------------------------------------------------------------------------CCS
T ss_pred             ccccccccccc-----------------------------------------------------------------cccc
Confidence            75442111000                                                                 0001


Q ss_pred             cccccCCCCccCchhhcC---------CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCCh
Q 012762          315 SMSFVGTHEYLAPEIISG---------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPG  385 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~---------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (457)
                      .....||+.|+|||++.+         ..++.++|||||||++|||++|+.||...........+............++.
T Consensus       191 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (319)
T 2y4i_B          191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGK  270 (319)
T ss_dssp             CBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCT
T ss_pred             cccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCH
Confidence            112358999999999975         34788999999999999999999999988877777666655444444446888


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ++.++|.+||..||++||+    +.++++
T Consensus       271 ~l~~li~~~l~~~p~~Rpt----~~~l~~  295 (319)
T 2y4i_B          271 EISDILLFCWAFEQEERPT----FTKLMD  295 (319)
T ss_dssp             THHHHHHHHHCSSTTTSCC----HHHHHH
T ss_pred             HHHHHHHHHhcCChhhCcC----HHHHHH
Confidence            9999999999999999999    888876

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.1e-43  Score=376.37  Aligned_cols=259  Identities=24%  Similarity=0.365  Sum_probs=214.8

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ..+..++|++.+.||+|+||+||+|.++... ..+..||+|++...  ........+.+|+.+|+.++||||+++++++.
T Consensus       385 ~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~-~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~  461 (656)
T 2j0j_A          385 YEIQRERIELGRCIGEGQFGDVHQGIYMSPE-NPAMAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT  461 (656)
T ss_dssp             TBCCGGGEEEEEEEECCSSCCEEEEEECCSS-SCCEEEEEEECSST--TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccccccEEEeeEEeeCCCEEEEEEEEecCC-CccEEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe
Confidence            4556678999999999999999999986432 25678999998653  23344567888999999999999999999985


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                       ++..|+||||+++|+|.+++... ...+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++
T Consensus       462 -~~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~  539 (656)
T 2j0j_A          462 -ENPVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  539 (656)
T ss_dssp             -SSSCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred             -cCceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCe
Confidence             45789999999999999998764 2468999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                     ..
T Consensus       540 ~~~~~~~~~---------------------------------------------------------------------~~  550 (656)
T 2j0j_A          540 YMEDSTYYK---------------------------------------------------------------------AS  550 (656)
T ss_dssp             SCCC----------------------------------------------------------------------------
T ss_pred             ecCCCccee---------------------------------------------------------------------cc
Confidence            553221100                                                                     01


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...||+.|+|||++.+..++.++|||||||++|||++ |..||.+....+....+.... ..+....++..+.+||.+||
T Consensus       551 ~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~li~~~l  629 (656)
T 2j0j_A          551 KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE-RLPMPPNCPPTLYSLMTKCW  629 (656)
T ss_dssp             ---CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC-CCCCCTTCCHHHHHHHHHHT
T ss_pred             CCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC-CCCCCccccHHHHHHHHHHc
Confidence            1247889999999999999999999999999999997 999999988777766665543 34445568999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhc
Q 012762          396 VKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~  414 (457)
                      ..||++||+    +.+|++
T Consensus       630 ~~dP~~RPs----~~el~~  644 (656)
T 2j0j_A          630 AYDPSRRPR----FTELKA  644 (656)
T ss_dssp             CSSGGGSCC----HHHHHH
T ss_pred             CCChhHCcC----HHHHHH
Confidence            999999999    888875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=5.4e-44  Score=347.58  Aligned_cols=254  Identities=19%  Similarity=0.236  Sum_probs=201.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-hhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .|...+.||+|+||+||+|.+      +++.||+|++..... ........+.+|+++++.++||||+++++++...+..
T Consensus        32 ~~~~~~~lg~G~~g~Vy~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  105 (307)
T 2nru_A           32 ISVGGNKMGEGGFGVVYKGYV------NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDL  105 (307)
T ss_dssp             TTTTCCEEEECSSEEEEEEES------SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             ccccCCccccCCCeEEEEEEE------CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCce
Confidence            356678999999999999974      577899999865422 2234567788899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQ-PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~-~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      |+||||+++++|.+++... ....+++..++.++.||+.||.|||+.||+||||||+|||++.++.+||+|||++.....
T Consensus       106 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  185 (307)
T 2nru_A          106 CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEK  185 (307)
T ss_dssp             EEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccccccccc
Confidence            9999999999999888743 235699999999999999999999999999999999999999999999999999865432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                    .......|
T Consensus       186 ~~~~--------------------------------------------------------------------~~~~~~~g  197 (307)
T 2nru_A          186 FAQT--------------------------------------------------------------------VMTSRIVG  197 (307)
T ss_dssp             CSSC--------------------------------------------------------------------EECSSCCS
T ss_pred             cccc--------------------------------------------------------------------ccccccCC
Confidence            1110                                                                    00112469


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhc----cc--------CCC-CCCCCChHH
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR----AL--------EFP-KEPSVPGPA  387 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~----~~--------~~~-~~~~~~~~~  387 (457)
                      |+.|+|||++.+. ++.++|||||||++|+|++|..||...........+...    ..        ..+ .....+..+
T Consensus       198 ~~~y~aPE~~~~~-~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (307)
T 2nru_A          198 TTAYMAPEALRGE-ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM  276 (307)
T ss_dssp             CGGGCCHHHHTTE-ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHH
T ss_pred             CcCcCChHHhcCC-CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence            9999999998764 789999999999999999999999875543222221111    00        000 111234578


Q ss_pred             HHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          388 KDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       388 ~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+++.+||..||.+||+    +.+++++
T Consensus       277 ~~li~~cl~~~p~~Rps----~~~l~~~  300 (307)
T 2nru_A          277 YSVASQCLHEKKNKRPD----IKKVQQL  300 (307)
T ss_dssp             HHHHHHHTCSSTTTSCC----HHHHHHH
T ss_pred             HHHHHHHcCCCcccCcC----HHHHHHH
Confidence            99999999999999999    8888764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=1.3e-43  Score=350.06  Aligned_cols=249  Identities=22%  Similarity=0.309  Sum_probs=198.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHH--cCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM--LDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~--l~H~nIv~l~~~~~~~~  159 (457)
                      ++|++.+.||+|+||+||+|.+      +++.||||++...      ....+.+|+++++.  ++||||+++++++....
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~------~~~~vavK~~~~~------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~  109 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKW------RGEEVAVKIFSSR------EERSWFREAEIYQTVMLRHENILGFIAADNKDN  109 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEE------TTEEEEEEEECGG------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC
T ss_pred             ccEEEEeeecCCCCcEEEEEEE------cCccEEEEEeCch------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC
Confidence            4799999999999999999986      4789999999653      23456778999888  78999999999998876


Q ss_pred             ----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH--------HcCceeecCCCCCeEEccCCCE
Q 012762          160 ----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH--------MMGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       160 ----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH--------~~~iiHrDIKp~NIll~~~~~v  227 (457)
                          ..|+||||+++++|.+++..   ..+++..++.++.||+.||.|||        +.||+||||||+|||++.++.+
T Consensus       110 ~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~  186 (342)
T 1b6c_B          110 GTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  186 (342)
T ss_dssp             SSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred             CccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence                78999999999999999976   46999999999999999999999        8999999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||+|||++..........                                                              
T Consensus       187 kL~Dfg~~~~~~~~~~~~--------------------------------------------------------------  204 (342)
T 1b6c_B          187 CIADLGLAVRHDSATDTI--------------------------------------------------------------  204 (342)
T ss_dssp             EECCCTTCEEEETTTTEE--------------------------------------------------------------
T ss_pred             EEEECCCceecccccccc--------------------------------------------------------------
Confidence            999999986543211100                                                              


Q ss_pred             ccCCccccccccCCCCccCchhhcCCC------CCccchhhhhhHHHHHHhcC----------CCCCCCCCh-----HHH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEG------HGNAVDWWTLGIFIFELFYG----------TTPFKGIDH-----ELT  366 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~------~~~~sDiwSlG~il~elltG----------~~Pf~~~~~-----~~~  366 (457)
                          ........||+.|+|||++.+..      ++.++|||||||++|||++|          ..||.....     ...
T Consensus       205 ----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~  280 (342)
T 1b6c_B          205 ----DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  280 (342)
T ss_dssp             ----EECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             ----ccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHH
Confidence                00111346999999999998763      33689999999999999999          889876432     222


Q ss_pred             HHHHHhcccCCCCCC-----CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          367 LANVVARALEFPKEP-----SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ...+...........     .+++.+.+||.+||..||++||+    +.+|++|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps----~~~i~~~  330 (342)
T 1b6c_B          281 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT----ALRIKKT  330 (342)
T ss_dssp             HHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCC----HHHHHHH
Confidence            333333322222111     22357899999999999999999    8888875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=9.5e-45  Score=383.48  Aligned_cols=260  Identities=25%  Similarity=0.386  Sum_probs=204.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc---
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC---  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~---  157 (457)
                      .++|++.++||+|+||+||+|.++    .+|+.||||++...  ........+.+|+++|++++||||+++++++..   
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~----~tg~~VAVKvi~~~--~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~   86 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQ----DTGEQVAIKQCRQE--LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQK   86 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCT----TTTCCEEECCCCSC--CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCC
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEEC----CCCcEEEEEEeccc--CCHHHHHHHHHHHHHHHhCCCCCCCceeeeeccccc
Confidence            478999999999999999988865    47889999998654  233455678889999999999999999999765   


Q ss_pred             ---CCcEEEEEeecCCCChHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCC---EEEe
Q 012762          158 ---PRWSCLLTEFCPGGDLHVLRQRQP-DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGH---IMLT  230 (457)
Q Consensus       158 ---~~~~~lV~E~~~~~sL~~~~~~~~-~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~---vkl~  230 (457)
                         ++..|+|||||+|++|.+++.... ...+++..++.++.||+.||.|||+.||+||||||+|||++.++.   +||+
T Consensus        87 ~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~  166 (676)
T 3qa8_A           87 LAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKII  166 (676)
T ss_dssp             CCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred             ccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEc
Confidence               677899999999999999988743 236899999999999999999999999999999999999997765   9999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||++........                                                                   
T Consensus       167 DFG~a~~~~~~~~-------------------------------------------------------------------  179 (676)
T 3qa8_A          167 DLGYAKELDQGEL-------------------------------------------------------------------  179 (676)
T ss_dssp             SCCCCCBTTSCCC-------------------------------------------------------------------
T ss_pred             ccccccccccccc-------------------------------------------------------------------
Confidence            9999865432110                                                                   


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH--------------HHhcccC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN--------------VVARALE  376 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~--------------~~~~~~~  376 (457)
                          .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.........              ...+...
T Consensus       180 ----~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~  255 (676)
T 3qa8_A          180 ----CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVK  255 (676)
T ss_dssp             ----CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCC
T ss_pred             ----cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccc
Confidence                1124699999999999999999999999999999999999999976432211100              0011111


Q ss_pred             CCC----C----CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          377 FPK----E----PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       377 ~~~----~----~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      +..    .    ..++..+.+||.+||..||++||+    +.++++||||+.+
T Consensus       256 ~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPT----a~elL~hp~F~~l  304 (676)
T 3qa8_A          256 FSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGT----DPQNPNVGCFQAL  304 (676)
T ss_dssp             CCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---C----CTTCCCCTTHHHH
T ss_pred             cccccCCchhhchhhhHHHHHHHHHHccCCHhhCcC----HHHHhcCHHHHHH
Confidence            111    1    124578999999999999999999    9999999999864

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=3.5e-45  Score=361.03  Aligned_cols=246  Identities=15%  Similarity=0.137  Sum_probs=191.7

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-----hhhHHHHHHHHHHHHHHcC---------C
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-----SRNKESRARIEREILEMLD---------H  145 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----~~~~~~~~~~E~~il~~l~---------H  145 (457)
                      ..++|+++++||+|+||+||+|++      +|+.||||++.+....     .......+.+|+++|+.++         |
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~------~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h   91 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA------DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRT   91 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE------TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBC
T ss_pred             ccccchheeeecccCceEEEEEEe------CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccC
Confidence            346899999999999999999986      5689999999865321     2223467788999998885         8


Q ss_pred             CCCceEEEEEE------------------------------cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHH
Q 012762          146 PFLPTLYATLD------------------------------CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS  195 (457)
Q Consensus       146 ~nIv~l~~~~~------------------------------~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~  195 (457)
                      +||+++.+++.                              ..+.+|||||||++|++...+..   ..+++..++.++.
T Consensus        92 ~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~  168 (336)
T 2vuw_A           92 EGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILH  168 (336)
T ss_dssp             CCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHH
T ss_pred             CchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHH
Confidence            88888777643                              26789999999999976544433   5689999999999


Q ss_pred             HHHHHHHHHH-HcCceeecCCCCCeEEccCC--------------------CEEEeccCCCcCCCCCCcccccccCCCCC
Q 012762          196 EVVVALEFLH-MMGIIYRDLKPENVLVRSDG--------------------HIMLTDFDLSLKGDNSTSTAQLVSDQSPP  254 (457)
Q Consensus       196 qi~~~L~yLH-~~~iiHrDIKp~NIll~~~~--------------------~vkl~DFG~s~~~~~~~~~~~~~~~~~~~  254 (457)
                      ||+.||.||| ++||+||||||+||||+.++                    .+||+|||+++....              
T Consensus       169 qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~--------------  234 (336)
T 2vuw_A          169 QLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD--------------  234 (336)
T ss_dssp             HHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET--------------
T ss_pred             HHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC--------------
Confidence            9999999999 99999999999999999887                    899999999864321              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCC
Q 012762          255 TGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG  334 (457)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~  334 (457)
                                                                                   ...+||+.|||||++.+..
T Consensus       235 -------------------------------------------------------------~~~~gt~~y~aPE~~~g~~  253 (336)
T 2vuw_A          235 -------------------------------------------------------------GIVVFCDVSMDEDLFTGDG  253 (336)
T ss_dssp             -------------------------------------------------------------TEEECCCCTTCSGGGCCCS
T ss_pred             -------------------------------------------------------------CcEEEeecccChhhhcCCC
Confidence                                                                         0236999999999999876


Q ss_pred             CCccchhhhhhHH-HHHHhcCCCCCCCCCh-HHHHHHHHhc-ccCCCC----CCCCChHHHHHHHHHhhhCCCCCCCCCc
Q 012762          335 HGNAVDWWTLGIF-IFELFYGTTPFKGIDH-ELTLANVVAR-ALEFPK----EPSVPGPAKDLIAQLLVKDPTRRMGSKM  407 (457)
Q Consensus       335 ~~~~sDiwSlG~i-l~elltG~~Pf~~~~~-~~~~~~~~~~-~~~~~~----~~~~~~~~~~ll~~~L~~dP~~Rps~~~  407 (457)
                       +.++||||||++ .++++.|..||.+... ......+... ......    ...+++++++||.+||+.|     |   
T Consensus       254 -~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----s---  324 (336)
T 2vuw_A          254 -DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----S---  324 (336)
T ss_dssp             -SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----S---
T ss_pred             -ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----C---
Confidence             899999998777 7888899999954211 1122222211 111111    1235678999999999987     7   


Q ss_pred             ChHHHh-cCCCCC
Q 012762          408 GATAIK-RHQFFN  419 (457)
Q Consensus       408 ~~~~ll-~hp~f~  419 (457)
                       +.|+| +||||+
T Consensus       325 -a~e~l~~Hp~f~  336 (336)
T 2vuw_A          325 -ATDLLCQHSLFK  336 (336)
T ss_dssp             -HHHHHHHCGGGC
T ss_pred             -HHHHHhcCCCcC
Confidence             99999 999995

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.1e-44  Score=365.80  Aligned_cols=253  Identities=18%  Similarity=0.183  Sum_probs=195.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC-CCC-----------
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH-PFL-----------  148 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H-~nI-----------  148 (457)
                      ...|++.+.||+|+||+||+|++.    .+|+.||||++...........+.+++|+.+++.+.| .|+           
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~----~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~  152 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQ----ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIF  152 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCC
T ss_pred             ceeEEEecccccCCCEEEEEEEec----CCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhccccc
Confidence            345889999999999999999986    4788999999974433333445678889999998877 221           


Q ss_pred             ----------ceEEEEEEc-----CCcEEEEEeecCCCChHHHHH-----hCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 012762          149 ----------PTLYATLDC-----PRWSCLLTEFCPGGDLHVLRQ-----RQPDKRFHESAVRFYASEVVVALEFLHMMG  208 (457)
Q Consensus       149 ----------v~l~~~~~~-----~~~~~lV~E~~~~~sL~~~~~-----~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~  208 (457)
                                ..++.++..     ...++++|+++ +++|.++++     ......+++..+..++.||+.||.|||++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  231 (413)
T 3dzo_A          153 PFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG  231 (413)
T ss_dssp             CCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence                      111122222     22467888877 899998885     222355788889999999999999999999


Q ss_pred             ceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCccccc
Q 012762          209 IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCL  288 (457)
Q Consensus       209 iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (457)
                      ||||||||+||||+.++.+||+|||+++.....                                               
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----------------------------------------------  264 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----------------------------------------------  264 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----------------------------------------------
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCc-----------------------------------------------
Confidence            999999999999999999999999997643211                                               


Q ss_pred             CcchhccccCCCCCCCcccccCCccccccccCCCCccCchhh----------cCCCCCccchhhhhhHHHHHHhcCCCCC
Q 012762          289 HPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEII----------SGEGHGNAVDWWTLGIFIFELFYGTTPF  358 (457)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l----------~~~~~~~~sDiwSlG~il~elltG~~Pf  358 (457)
                                                ....+| +.|+|||++          .+..++.++|||||||++|||++|+.||
T Consensus       265 --------------------------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf  317 (413)
T 3dzo_A          265 --------------------------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPN  317 (413)
T ss_dssp             --------------------------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             --------------------------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCC
Confidence                                      113468 999999999          5556888999999999999999999999


Q ss_pred             CCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          359 KGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      .+.........+      +.....+++++.+||.+||..||++||+    +.++++||||+.+.
T Consensus       318 ~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~l~~dP~~Rpt----~~~~l~~~~~~~~~  371 (413)
T 3dzo_A          318 TDDAALGGSEWI------FRSCKNIPQPVRALLEGFLRYPKEDRLL----PLQAMETPEYEQLR  371 (413)
T ss_dssp             CTTGGGSCSGGG------GSSCCCCCHHHHHHHHHHTCSSGGGSCC----HHHHTTSHHHHHHH
T ss_pred             CCcchhhhHHHH------HhhcccCCHHHHHHHHHHccCChhhCcC----HHHHHhCHHHHHHH
Confidence            876544332222      2223458899999999999999999999    99999999998754

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5e-42  Score=331.19  Aligned_cols=227  Identities=15%  Similarity=0.123  Sum_probs=186.9

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|++.+.||+|+||+||+|++.    .+++.||||++.............+.+|+++++.++||||+++++++..+
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~  103 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDT----ALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR  103 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEET----TTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEec----CCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC
Confidence            44578999999999999999999986    47899999999876544445567788899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..||||||++|++|.++++.   + .....+..++.||+.||.|||++||+||||||+|||++.+|.+||+++|.    
T Consensus       104 ~~~~lv~e~~~g~~L~~~l~~---~-~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~~----  175 (286)
T 3uqc_A          104 AGGLVVAEWIRGGSLQEVADT---S-PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPAT----  175 (286)
T ss_dssp             TEEEEEEECCCEEEHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCCC----
T ss_pred             CcEEEEEEecCCCCHHHHHhc---C-CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEeccc----
Confidence            999999999999999999854   2 45667888999999999999999999999999999999999999985542    


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (286)
T 3uqc_A          176 --------------------------------------------------------------------------------  175 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHH---HHHhcccCCC--CCCCCChHHHHHHHH
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA---NVVARALEFP--KEPSVPGPAKDLIAQ  393 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~ll~~  393 (457)
                            ++       .++.++|||||||++|||++|+.||.+......+.   ..+......+  ....+++++.+||.+
T Consensus       176 ------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  242 (286)
T 3uqc_A          176 ------MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAAR  242 (286)
T ss_dssp             ------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHH
T ss_pred             ------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHH
Confidence                  22       26889999999999999999999998865432111   1111111110  124588999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||+.||.+| +    +.++++.
T Consensus       243 ~l~~dP~~R-s----~~el~~~  259 (286)
T 3uqc_A          243 SVQGDGGIR-S----ASTLLNL  259 (286)
T ss_dssp             HHCTTSSCC-C----HHHHHHH
T ss_pred             HcccCCccC-C----HHHHHHH
Confidence            999999999 9    8887763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.9e-42  Score=370.39  Aligned_cols=246  Identities=20%  Similarity=0.296  Sum_probs=198.0

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      +.+..++|++.+.||+|+||+||+|+++.   .+++.||||++....  .......+.+|+++|+.++||||+++++++.
T Consensus        75 g~~~~~~y~i~~~lg~G~~g~Vy~a~~~~---~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  149 (681)
T 2pzi_A           75 GDIVAGQYEVKGCIAHGGLGWIYLALDRN---VNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVE  149 (681)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEEGG---GTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE
T ss_pred             CCEeCCceEEEEEEeeCCCeEEEEEEEcC---CCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEe
Confidence            34555899999999999999999999863   257899999986532  2234566788999999999999999999998


Q ss_pred             cCCc-----EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          157 CPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       157 ~~~~-----~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      ..+.     .||||||++|++|..++..    .+++..++.++.||+.||.|||++|||||||||+|||++.+ .+||+|
T Consensus       150 ~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~D  224 (681)
T 2pzi_A          150 HTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLID  224 (681)
T ss_dssp             EECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECC
T ss_pred             ecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEe
Confidence            7665     7999999999999876643    69999999999999999999999999999999999999875 899999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++.....                                                                      
T Consensus       225 FG~a~~~~~~----------------------------------------------------------------------  234 (681)
T 2pzi_A          225 LGAVSRINSF----------------------------------------------------------------------  234 (681)
T ss_dssp             CTTCEETTCC----------------------------------------------------------------------
T ss_pred             cccchhcccC----------------------------------------------------------------------
Confidence            9998644311                                                                      


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                          ...+||+.|+|||++.+. ++.++|||||||++|+|++|..||.+.....        ..........++.+.+||
T Consensus       235 ----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~--------~~~~~~~~~~~~~l~~li  301 (681)
T 2pzi_A          235 ----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG--------LPEDDPVLKTYDSYGRLL  301 (681)
T ss_dssp             ----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS--------CCTTCHHHHHCHHHHHHH
T ss_pred             ----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc--------ccccccccccCHHHHHHH
Confidence                123699999999999875 4889999999999999999999987532110        000000011356799999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      .+||..||++||+    ..+.+.|+|+.
T Consensus       302 ~~~l~~dP~~R~~----~~~~l~~~l~~  325 (681)
T 2pzi_A          302 RRAIDPDPRQRFT----TAEEMSAQLTG  325 (681)
T ss_dssp             HHHTCSSGGGSCS----SHHHHHHHHHH
T ss_pred             hhhccCChhhCCC----HHHHHHHHHHH
Confidence            9999999999999    78888887775

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=100.00  E-value=1.5e-35  Score=311.58  Aligned_cols=189  Identities=16%  Similarity=0.093  Sum_probs=132.8

Q ss_pred             EecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-------hhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEcCCc
Q 012762           89 RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-------VSRNKESRARIEREILEML-DHPFLPTLYATLDCPRW  160 (457)
Q Consensus        89 ~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-------~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~~~~  160 (457)
                      .++.|++|.+..++..    ..|+.||+|++.+...       .......++.+|+++|+++ .|+||+++++++++++.
T Consensus       241 ~~~~~~~~~h~~~rr~----~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~  316 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRY----FFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQS  316 (569)
T ss_dssp             C-C--------CCEEE----EECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSE
T ss_pred             ccccCCcccccccccc----cccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCE
Confidence            3556666666654433    4788999999976421       1233456788999999999 79999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|||||||+|++|.+++...  +.+++.   .|+.||+.||+|||++|||||||||+||||+.+|.+||+|||+++....
T Consensus       317 ~yLVMEyv~G~~L~d~i~~~--~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~  391 (569)
T 4azs_A          317 GWLVMEKLPGRLLSDMLAAG--EEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ  391 (569)
T ss_dssp             EEEEEECCCSEEHHHHHHTT--CCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred             EEEEEecCCCCcHHHHHHhC--CCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence            99999999999999999875  667764   4789999999999999999999999999999999999999999865432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ..                                                                      ....+.+|
T Consensus       392 ~~----------------------------------------------------------------------~~~~t~vG  401 (569)
T 4azs_A          392 DC----------------------------------------------------------------------SWPTNLVQ  401 (569)
T ss_dssp             ------------------------------------------------------------------------CCSHHHHH
T ss_pred             CC----------------------------------------------------------------------ccccCcee
Confidence            11                                                                      11224689


Q ss_pred             CCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCC
Q 012762          321 THEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTP  357 (457)
Q Consensus       321 t~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~P  357 (457)
                      |+.|||||++.+. +..++|+||+|+++++|.+|..+
T Consensus       402 Tp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          402 SFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             HHHHHHHHHC------------------CCCCTTHHH
T ss_pred             chhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence            9999999999875 67789999999999988766544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.95  E-value=1.5e-29  Score=264.51  Aligned_cols=194  Identities=17%  Similarity=0.123  Sum_probs=144.3

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh-----hhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-----SRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~-----~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ...+.||+|+||+||+|..      .+..+|+|+.......     .....+++.+|+++|++++||||+++..++...+
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~------~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~  412 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY------LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD  412 (540)
T ss_dssp             ---------CCEEEEEEEC------SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT
T ss_pred             CCCCEEeeCCCEEEEEEEE------CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC
Confidence            3456899999999999953      5678899986543221     1223456789999999999999996555555677


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..||||||++|++|.+++..          +..++.||+.||.|||++||+||||||+|||++.  .+||+|||+++...
T Consensus       413 ~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~  480 (540)
T 3en9_A          413 NKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISN  480 (540)
T ss_dssp             TTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECC
Confidence            78999999999999988764          5678999999999999999999999999999988  99999999987654


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .......                                                               .......+++
T Consensus       481 ~~~~~~~---------------------------------------------------------------~~~~~~~~~~  497 (540)
T 3en9_A          481 LDEDKAV---------------------------------------------------------------DLIVFKKAVL  497 (540)
T ss_dssp             CHHHHHH---------------------------------------------------------------HHHHHHHHHH
T ss_pred             Ccccccc---------------------------------------------------------------chhhhhhhhc
Confidence            3211000                                                               0000112467


Q ss_pred             CCCCccCchhhcC--CCCCccchhhhhhHHHHHHhcCCCCCC
Q 012762          320 GTHEYLAPEIISG--EGHGNAVDWWTLGIFIFELFYGTTPFK  359 (457)
Q Consensus       320 gt~~y~aPE~l~~--~~~~~~sDiwSlG~il~elltG~~Pf~  359 (457)
                      ||+.|||||++.+  ..|+..+|+|+..+-..+.+.++.+|.
T Consensus       498 GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          498 STHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            9999999999987  568888999999998888887776663

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.93  E-value=8.8e-27  Score=223.88  Aligned_cols=131  Identities=18%  Similarity=0.107  Sum_probs=105.0

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---------------hHHHHHHHHHHHHHHcCCCCCce
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---------------NKESRARIEREILEMLDHPFLPT  150 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---------------~~~~~~~~E~~il~~l~H~nIv~  150 (457)
                      +.+.||+|+||.||+|.+.     +|+.||+|+++.......               .....+.+|+++|++++  | ++
T Consensus        94 ~~~~iG~G~~g~Vy~~~~~-----~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~  165 (282)
T 1zar_A           94 IGKLMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LA  165 (282)
T ss_dssp             EEEEEEECSSEEEEEEEET-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SS
T ss_pred             ecCEeccCCCceEEEEEeC-----CCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CC
Confidence            3499999999999999872     788999999965432111               13456788999999999  4 55


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEe
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLT  230 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~  230 (457)
                      +.+++.. +..|+||||++|++|.. +..        .....++.||+.||.|||++||+||||||+|||++ +|.+||+
T Consensus       166 v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~  234 (282)
T 1zar_A          166 VPKVYAW-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWII  234 (282)
T ss_dssp             SCCEEEE-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEEC
T ss_pred             cCeEEec-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEE
Confidence            5555544 45699999999999976 311        23457999999999999999999999999999999 9999999


Q ss_pred             ccCCC
Q 012762          231 DFDLS  235 (457)
Q Consensus       231 DFG~s  235 (457)
                      |||++
T Consensus       235 DFG~a  239 (282)
T 1zar_A          235 DFPQS  239 (282)
T ss_dssp             CCTTC
T ss_pred             ECCCC
Confidence            99987

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.87  E-value=2.6e-22  Score=190.13  Aligned_cols=142  Identities=18%  Similarity=0.133  Sum_probs=108.8

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCce--EEEEEeehhhhhh---------------------hhHHHHHHHHHHHH
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCF--FAAKVMDKRELVS---------------------RNKESRARIEREIL  140 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~--vAvK~~~~~~~~~---------------------~~~~~~~~~E~~il  140 (457)
                      |.+.+.||+|+||.||+|.+..    +|+.  ||||+++......                     ......+.+|+++|
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~----~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l  124 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVF----DGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNL  124 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEE----TTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcC----CCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHH
Confidence            7889999999999999999852    6888  9999975432110                     01124577899999


Q ss_pred             HHcCCCCC--ceEEEEEEcCCcEEEEEeecCC-C----ChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCceee
Q 012762          141 EMLDHPFL--PTLYATLDCPRWSCLLTEFCPG-G----DLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-MMGIIYR  212 (457)
Q Consensus       141 ~~l~H~nI--v~l~~~~~~~~~~~lV~E~~~~-~----sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-~~~iiHr  212 (457)
                      +.+.|++|  +.++++    +..||||||+.+ |    +|.++...     .++..+..++.||+.+|.||| +.|||||
T Consensus       125 ~~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHr  195 (258)
T 1zth_A          125 ERAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHA  195 (258)
T ss_dssp             HHHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECS
T ss_pred             HHHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeC
Confidence            99988764  445543    356899999932 3    66654322     234567889999999999999 9999999


Q ss_pred             cCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          213 DLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       213 DIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      ||||+|||++.  .++|+|||++.....
T Consensus       196 Dlkp~NILl~~--~~~liDFG~a~~~~~  221 (258)
T 1zth_A          196 DLSEYNIMYID--KVYFIDMGQAVTLRH  221 (258)
T ss_dssp             SCSTTSEEESS--SEEECCCTTCEETTS
T ss_pred             CCCHHHEEEcC--cEEEEECcccccCCC
Confidence            99999999987  899999999976543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.80  E-value=1.4e-19  Score=179.09  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-----------hh--------HHHHHHHHHHHHHHcC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-----------RN--------KESRARIEREILEMLD  144 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-----------~~--------~~~~~~~E~~il~~l~  144 (457)
                      |.+.++||.|+||.||+|.+.     +|+.||||+++......           ..        ......+|...|.++.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~-----~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~  171 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE-----KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALY  171 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT-----TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCEeeeCCceEEEEEECC-----CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999864     68999999976432110           00        0111245777788885


Q ss_pred             CCCC--ceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          145 HPFL--PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       145 H~nI--v~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      +.++  ...+++   . ..+|||||++|++|..+..        ......++.||+.+|.|||+.|||||||||.|||++
T Consensus       172 ~~gv~vp~p~~~---~-~~~LVME~i~G~~L~~l~~--------~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~  239 (397)
T 4gyi_A          172 EEGFPVPEPIAQ---S-RHTIVMSLVDALPMRQVSS--------VPDPASLYADLIALILRLAKHGLIHGDFNEFNILIR  239 (397)
T ss_dssp             HTTCSCCCEEEE---E-TTEEEEECCSCEEGGGCCC--------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE
T ss_pred             hcCCCCCeeeec---c-CceEEEEecCCccHhhhcc--------cHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEe
Confidence            5544  233332   2 2379999999999864321        123567889999999999999999999999999999


Q ss_pred             cCCC----------EEEeccCCCcCCC
Q 012762          223 SDGH----------IMLTDFDLSLKGD  239 (457)
Q Consensus       223 ~~~~----------vkl~DFG~s~~~~  239 (457)
                      .+|.          +.|+||+.+....
T Consensus       240 ~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          240 EEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             EEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             CCCCcccccccccceEEEEeCCcccCC
Confidence            8773          8999999876544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.48  E-value=1.6e-13  Score=129.49  Aligned_cols=139  Identities=17%  Similarity=0.122  Sum_probs=110.5

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~  160 (457)
                      +.|++...+|.|+++.||++..      .+..+++|+......   .....+.+|.++|+.|. |..+.++++++...+.
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~------~~~~~vlK~~~~~~~---~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~   84 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVG------ENENLYLKMTDSRYK---GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW   84 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEEC------SSCEEEEEEECGGGT---TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             ccceeEeeccCCCCCeEEEEEC------CCCcEEEEeCCcccC---CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCc
Confidence            4689999999999999998863      357899999875321   11234778999999984 6788899999998889


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH----------------------------------
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM----------------------------------  206 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~----------------------------------  206 (457)
                      .|+||||++|.+|.....       +......++.++..+|..||+                                  
T Consensus        85 ~~lv~e~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (263)
T 3tm0_A           85 SNLLMSEADGVLCSEEYE-------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCEN  157 (263)
T ss_dssp             EEEEEECCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGG
T ss_pred             eEEEEEecCCeehhhccC-------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccc
Confidence            999999999999875421       112234678899999999998                                  


Q ss_pred             -------------------------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          207 -------------------------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       207 -------------------------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                                               ..++|+|++|.|||++.++.+.|+||+.+.
T Consensus       158 ~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          158 WEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             GSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                     458999999999999765556799999764

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.36  E-value=1.1e-12  Score=123.20  Aligned_cols=134  Identities=14%  Similarity=0.048  Sum_probs=98.4

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC--CceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF--LPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n--Iv~l~~~~~~~~  159 (457)
                      .++.+....+.|..+.||++...     +|..+++|+....      ....+..|+++|+.+.+.+  +.+++++...++
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~~-----~g~~~vlK~~~~~------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~   88 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSAQ-----GRPVLFVKTDLSG------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAG   88 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEECT-----TSCCEEEEEECSC------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSS
T ss_pred             CCCceEecccCCCCceEEEEecC-----CCCeEEEEeCCcc------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCC
Confidence            45666554456667999988642     5677999997543      1134667999999985444  567999988888


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC-------------------------------
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG-------------------------------  208 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~-------------------------------  208 (457)
                      ..++||||++|.+|.  ..     ...   ...++.++...|..||+..                               
T Consensus        89 ~~~~v~e~i~G~~l~--~~-----~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (264)
T 1nd4_A           89 RDWLLLGEVPGQDLL--SS-----HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDL  158 (264)
T ss_dssp             CEEEEEECCSSEETT--TS-----CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSC
T ss_pred             CCEEEEEecCCcccC--cC-----cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhh
Confidence            899999999998884  11     122   2245677777788887643                               


Q ss_pred             ---------------------------ceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          209 ---------------------------IIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       209 ---------------------------iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                                                 ++|+|++|.|||++.++.+.|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          159 DEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             CGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                                       9999999999999876666799999864

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.28  E-value=2e-11  Score=120.59  Aligned_cols=142  Identities=15%  Similarity=0.227  Sum_probs=106.3

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEee--hhhhhhhhHHHHHHHHHHHHHHcC--CCCCceEEEEEEcC--
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMD--KRELVSRNKESRARIEREILEMLD--HPFLPTLYATLDCP--  158 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~--~~~~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~~~~~~--  158 (457)
                      .-++.|+.|.++.||++..      .+..+++|+..  .....  .....+.+|.++|+.|.  +..+++++.++.+.  
T Consensus        41 ~~~~~l~~G~sn~~y~v~~------~~~~~vlr~~~~p~~~~~--~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~  112 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVT------PGQTYVMRAKPGPKSKLL--PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV  112 (359)
T ss_dssp             CEEEECCC-CCSCEEEEEC------SSCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT
T ss_pred             ceEEEcCCcccceEEEEEE------CCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc
Confidence            3477899999999998874      24578889876  43211  12345677999999996  45688999998776  


Q ss_pred             -CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 012762          159 -RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-------------------------------  206 (457)
Q Consensus       159 -~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-------------------------------  206 (457)
                       +..|+||||++|..+.+.    ....++......++.+++..|..||.                               
T Consensus       113 ~g~~~~vme~v~G~~l~~~----~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (359)
T 3dxp_A          113 IGRAFYIMEFVSGRVLWDQ----SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKL  188 (359)
T ss_dssp             TSSCEEEEECCCCBCCCCT----TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEecCCeecCCC----ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHh
Confidence             458999999999887431    11347788888999999999999997                               


Q ss_pred             ---------------------------cCceeecCCCCCeEEccCCC--EEEeccCCCcCC
Q 012762          207 ---------------------------MGIIYRDLKPENVLVRSDGH--IMLTDFDLSLKG  238 (457)
Q Consensus       207 ---------------------------~~iiHrDIKp~NIll~~~~~--vkl~DFG~s~~~  238 (457)
                                                 .+++|+|+++.|||++.++.  +.|+||+.+...
T Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g  249 (359)
T 3dxp_A          189 SETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG  249 (359)
T ss_dssp             HCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred             cCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence                                       35999999999999997753  689999987543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.09  E-value=1.5e-10  Score=111.62  Aligned_cols=134  Identities=17%  Similarity=0.114  Sum_probs=98.4

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCC--CceEEEEEEcCC---c
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPF--LPTLYATLDCPR---W  160 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~n--Iv~l~~~~~~~~---~  160 (457)
                      ++.++.|.+..||++.         ..+++|+....     .....+.+|.++|+.+ .+..  +.+++......+   .
T Consensus        25 i~~~~~G~~n~v~~v~---------~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~   90 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN---------RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQM   90 (304)
T ss_dssp             CCEEEECSSEEEEEST---------TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSC
T ss_pred             eEecCCCCcceEEEEC---------CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCc
Confidence            3458999999999642         35889987543     2345678899999988 3433  455655544333   3


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH----------------------------------
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM----------------------------------  206 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~----------------------------------  206 (457)
                      .|+|||+++|.+|.....    ..++..+...++.|++..|..||+                                  
T Consensus        91 ~~~vm~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (304)
T 3sg8_A           91 SFAGFTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELK  166 (304)
T ss_dssp             SCEEEECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSC
T ss_pred             ceEEEcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCC
Confidence            489999999999864332    236777888888888888888886                                  


Q ss_pred             ------------------------cCceeecCCCCCeEEcc--CCCEEEeccCCCcCC
Q 012762          207 ------------------------MGIIYRDLKPENVLVRS--DGHIMLTDFDLSLKG  238 (457)
Q Consensus       207 ------------------------~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~~  238 (457)
                                              ..++|+|++|.||+++.  ++.+.|+||+.+...
T Consensus       167 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          167 GPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS  224 (304)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred             cccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence                                    13799999999999997  456789999987543

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.77  E-value=1.2e-07  Score=91.38  Aligned_cols=134  Identities=16%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCC---CCceEEEEEE-cCCcEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHP---FLPTLYATLD-CPRWSC  162 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~---nIv~l~~~~~-~~~~~~  162 (457)
                      ++.++.|....||+.         +..+++|+....     .....+..|.++|+.|.+.   .|.+++.+.. ..+..|
T Consensus        24 v~~l~~G~~n~v~~v---------g~~~VlR~~~~~-----~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~   89 (306)
T 3tdw_A           24 VESLGEGFRNYAILV---------NGDWVFRFPKSQ-----QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPF   89 (306)
T ss_dssp             EEEEEECSSEEEEEE---------TTTEEEEEESSH-----HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEE
T ss_pred             eeecCCCcceeEEEE---------CCEEEEEecCCc-----hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceE
Confidence            456888999999975         345888986322     2345678899999999653   3667777774 456678


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc-----------------------------------
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM-----------------------------------  207 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~-----------------------------------  207 (457)
                      +|||+++|..|....-    ..++......++.++...|..||+.                                   
T Consensus        90 ~v~e~i~G~~l~~~~~----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~  165 (306)
T 3tdw_A           90 VGYRKVQGQILGEDGM----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLD  165 (306)
T ss_dssp             EEEECCCSEECHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred             EEEeccCCeECchhhh----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999998865321    1244555555555555555555532                                   


Q ss_pred             -------------------------CceeecCCCCCeEEcc---CCCE-EEeccCCCcCC
Q 012762          208 -------------------------GIIYRDLKPENVLVRS---DGHI-MLTDFDLSLKG  238 (457)
Q Consensus       208 -------------------------~iiHrDIKp~NIll~~---~~~v-kl~DFG~s~~~  238 (457)
                                               .++|+|+++.|||++.   ++.+ .|+||+.+...
T Consensus       166 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          166 ESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             hhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                                     3599999999999987   4554 89999987543

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.74  E-value=1.7e-07  Score=88.30  Aligned_cols=132  Identities=20%  Similarity=0.142  Sum_probs=93.9

Q ss_pred             EecccCcc-eEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcEEEEEe
Q 012762           89 RLGSGDIG-SVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWSCLLTE  166 (457)
Q Consensus        89 ~LG~G~fg-~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~~lV~E  166 (457)
                      .+..|..| .||+....    ..+..+++|+-...      ....+..|.++|+.|. +-.|.++++++.+++..|+|||
T Consensus        31 ~~~~G~S~~~v~rl~~~----~~~~~~~lk~~~~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme  100 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGK----PNAPELFLKHGKGS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTT  100 (272)
T ss_dssp             EEECSSSSCEEEEEECC----TTCCCEEEEEEETH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             EccCCCcCCeEEEEEec----CCCeEEEEEECCCC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEE
Confidence            44556665 68977654    25667999987543      2345677999999884 4457889999999999999999


Q ss_pred             ecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHc---------------------------------------
Q 012762          167 FCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM---------------------------------------  207 (457)
Q Consensus       167 ~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~---------------------------------------  207 (457)
                      +++|.++.......      ......++.++...|.-||..                                       
T Consensus       101 ~l~G~~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (272)
T 4gkh_A          101 AIPGKTAFQVLEEY------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGW  174 (272)
T ss_dssp             CCCSEEHHHHHHHC------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTC
T ss_pred             eeCCccccccccCC------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccch
Confidence            99998886654431      112233445555555555531                                       


Q ss_pred             -------------------CceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          208 -------------------GIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       208 -------------------~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                                         .++|+|+.+.|||++.++.+-|+||+.+.
T Consensus       175 ~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          175 PVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             CHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                               27999999999999877777899999875

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.41  E-value=6.5e-07  Score=87.85  Aligned_cols=91  Identities=11%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             ceeEEEe-cccCcceEEEEEEeccC--CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-C--CCCceEEEEEEc
Q 012762           84 LRFVHRL-GSGDIGSVYLVQLKSKS--SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-H--PFLPTLYATLDC  157 (457)
Q Consensus        84 ~~~~~~L-G~G~fg~Vy~a~~~~~~--~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H--~nIv~l~~~~~~  157 (457)
                      ....+.| +.|....+|+.......  ...+..+++|+..............+..|.++|+.|. +  -.+.+++.+..+
T Consensus        22 v~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~  101 (357)
T 3ats_A           22 VTVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETT  101 (357)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECS
T ss_pred             eEEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccC
Confidence            3446788 88999999988643000  0015678999875432000000134567888888884 2  457888888766


Q ss_pred             C---CcEEEEEeecCCCChH
Q 012762          158 P---RWSCLLTEFCPGGDLH  174 (457)
Q Consensus       158 ~---~~~~lV~E~~~~~sL~  174 (457)
                      .   +..|+|||+++|..+.
T Consensus       102 ~~~~g~~~~v~e~l~G~~l~  121 (357)
T 3ats_A          102 GDVLGTPFFLMDYVEGVVPP  121 (357)
T ss_dssp             STTTSSCEEEEECCCCBCCC
T ss_pred             CCccCCceEEEEecCCCChh
Confidence            5   3568999999886653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.40  E-value=2.6e-06  Score=82.63  Aligned_cols=137  Identities=12%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--CCCCceEEE------EEEcC
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYA------TLDCP  158 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~------~~~~~  158 (457)
                      ++.|+.|..+.||++...     +| .+++|+....       ...+..|.++++.|.  .-.+.+++.      +....
T Consensus        37 ~~~l~gG~~n~~~~v~~~-----~~-~~vlk~~~~~-------~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~  103 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTD-----SG-AVCLKRIHRP-------EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHG  103 (346)
T ss_dssp             EEECC----CEEEEEEET-----TE-EEEEEEECSC-------HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEET
T ss_pred             eeeccccccCcEEEEEeC-----CC-CEEEEecCCC-------HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEEC
Confidence            456777788999988742     33 4899998642       122334666666553  123444443      12346


Q ss_pred             CcEEEEEeecCCCChH-----------HH---HHh-CCCC--C---------CCHHH-----------------------
Q 012762          159 RWSCLLTEFCPGGDLH-----------VL---RQR-QPDK--R---------FHESA-----------------------  189 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~-----------~~---~~~-~~~~--~---------~~~~~-----------------------  189 (457)
                      +..++||||++|..+.           ..   ++. ....  .         ..+..                       
T Consensus       104 ~~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  183 (346)
T 2q83_A          104 SFLFVVYDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDP  183 (346)
T ss_dssp             TEEEEEEECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             CEEEEEEEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            6789999999886542           01   111 0000  0         01100                       


Q ss_pred             --------HHHHHHHHHHHHHHHHH-------------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          190 --------VRFYASEVVVALEFLHM-------------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       190 --------~~~i~~qi~~~L~yLH~-------------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                              +..+..++..++.+|++             .+++|+|+++.|||++.++.+.|+||+.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          184 FSQLYLQEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence                    11112233445666652             579999999999999888889999999864

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.39  E-value=1.1e-06  Score=87.59  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh-hh---hhHHHHHHHHHHHHHHcCC--C-CCceEEEEEEcC
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL-VS---RNKESRARIEREILEMLDH--P-FLPTLYATLDCP  158 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~-~~---~~~~~~~~~E~~il~~l~H--~-nIv~l~~~~~~~  158 (457)
                      -.+.||.|.++.||++....    .++.|+||....... ..   .....++..|.++|+.+..  + .+.+++.+  +.
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~----~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~  107 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQE----HDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DT  107 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC--------CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ET
T ss_pred             EEEECCCCceEEEEEEEECC----CCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cC
Confidence            46789999999999997542    457899998653211 00   1123456779999988742  3 34566654  34


Q ss_pred             CcEEEEEeecCCC
Q 012762          159 RWSCLLTEFCPGG  171 (457)
Q Consensus       159 ~~~~lV~E~~~~~  171 (457)
                      +..++|||+++|.
T Consensus       108 ~~~~lvmE~l~g~  120 (397)
T 2olc_A          108 EMAVTVMEDLSHL  120 (397)
T ss_dssp             TTTEEEECCCTTS
T ss_pred             CccEEEEEeCCCc
Confidence            4568999999763

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=98.08  E-value=4.5e-05  Score=73.39  Aligned_cols=77  Identities=21%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC---CCCCceEEEEEEcCCcE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD---HPFLPTLYATLDCPRWS  161 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~---H~nIv~l~~~~~~~~~~  161 (457)
                      .-.+.|+.|.+..+|+...      .+..+++|+....      ....+..|.+.|+.|.   ...+++++.+....+..
T Consensus        39 ~~~~~l~gG~~n~~y~v~~------~~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~  106 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND------EVQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHS  106 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES------SSCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEE
T ss_pred             eeeEEeCCccceeeeEEEE------CCCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCce
Confidence            3467899999999998863      3567889987643      2456778999998883   36688999998888889


Q ss_pred             EEEEeecCCCCh
Q 012762          162 CLLTEFCPGGDL  173 (457)
Q Consensus       162 ~lV~E~~~~~sL  173 (457)
                      |+||||++|..+
T Consensus       107 ~lvme~l~G~~~  118 (312)
T 3jr1_A          107 FLLLEALNKSKN  118 (312)
T ss_dssp             EEEEECCCCCCC
T ss_pred             EEEEEeccCCCC
Confidence            999999998765

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.95  E-value=3.3e-05  Score=77.56  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=46.7

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhh--hh--hhHHHHHHHHHHHHHHc---CCCCCceEEEEEEcC
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKREL--VS--RNKESRARIEREILEML---DHPFLPTLYATLDCP  158 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~--~~--~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~~~  158 (457)
                      -++.||.|..+.||++..      .+..++||.......  ..  .....+...|.+++..+   ....+.+++.+.  .
T Consensus        38 ~i~~l~~G~~n~vyrv~~------~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~  109 (420)
T 2pyw_A           38 VIKEVGDGNLNFVFIVVG------SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--R  109 (420)
T ss_dssp             EEEECCCSSSCEEEEEEC------SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--T
T ss_pred             EEEEccCCCcEEEEEEEc------CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--C
Confidence            367889999999998852      456799994321100  00  00012223355544433   345677888776  4


Q ss_pred             CcEEEEEeec-CC
Q 012762          159 RWSCLLTEFC-PG  170 (457)
Q Consensus       159 ~~~~lV~E~~-~~  170 (457)
                      +..++|||++ +|
T Consensus       110 ~~~~lv~e~l~~g  122 (420)
T 2pyw_A          110 TMALIGMRYLEPP  122 (420)
T ss_dssp             TTTEEEECCCCTT
T ss_pred             CccEEEEeecCCc
Confidence            6678999999 77

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.73  E-value=0.00012  Score=69.39  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC---CCCceEEEEEEcCC
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH---PFLPTLYATLDCPR  159 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H---~nIv~l~~~~~~~~  159 (457)
                      ...-++.+|.|..+.||+.+..     +|+.|++|+......   .....+..|.+.|+.|.-   -.+++++++.    
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~-----DG~~~~vK~~~~~~~---~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----   83 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELA-----DGTPLFVKALPDDAP---ALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----   83 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEET-----TSCEEEEEECCTTCC---CCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----
T ss_pred             CeEEEEecCCCCCeEEEEEEEC-----CCCEEEEEEeCCCCc---chhhHHHHHHHHHHHHHhhCCCCcceEEecc----
Confidence            4666889999999999999864     788899998754321   223456779999998842   2356666653    


Q ss_pred             cEEEEEeecCCCCh
Q 012762          160 WSCLLTEFCPGGDL  173 (457)
Q Consensus       160 ~~~lV~E~~~~~sL  173 (457)
                      .-++||||++++..
T Consensus        84 ~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           84 DRTLAMEWVDERPP   97 (288)
T ss_dssp             TTEEEEECCCCCCC
T ss_pred             CceEEEEeecccCC
Confidence            24789999987654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.69  E-value=0.0002  Score=68.79  Aligned_cols=143  Identities=18%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC--CceEEEE------
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF--LPTLYAT------  154 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n--Iv~l~~~------  154 (457)
                      ...-++.|+.|....+|++...     .| .+++|+.....     ....+..|.++++.|...+  +.+++..      
T Consensus        23 ~~~~~~~i~~G~~n~~~~v~~~-----~g-~~vlk~~~~~~-----~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~   91 (322)
T 2ppq_A           23 SLTSYKGIAEGVENSNFLLHTT-----KD-PLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELL   91 (322)
T ss_dssp             CEEEEEEECC---EEEEEEEES-----SC-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSC
T ss_pred             cceEeeccCCCcccceEEEEeC-----Cc-cEEEEEeCCCC-----CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEE
Confidence            4455678888999999988742     23 68899986531     1223456888887773212  3444321      


Q ss_pred             EEcCCcEEEEEeecCCCChHH-----------H---HHhC-CC---CC---CCHHHHHHH---------------HHHHH
Q 012762          155 LDCPRWSCLLTEFCPGGDLHV-----------L---RQRQ-PD---KR---FHESAVRFY---------------ASEVV  198 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~-----------~---~~~~-~~---~~---~~~~~~~~i---------------~~qi~  198 (457)
                      ....+..++||+|++|..+..           .   ++.. ..   ..   .........               ...+.
T Consensus        92 ~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~  171 (322)
T 2ppq_A           92 GELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIR  171 (322)
T ss_dssp             EEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHH
T ss_pred             EEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            123456789999998865410           0   1111 00   00   111100000               01134


Q ss_pred             HHHHHHHH-------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          199 VALEFLHM-------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       199 ~~L~yLH~-------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+++++.       .+++|+|+++.|||++.++.+.|+||+.+.
T Consensus       172 ~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          172 PEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            44555553       369999999999999877656899998764

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.68  E-value=0.00018  Score=68.57  Aligned_cols=71  Identities=10%  Similarity=0.013  Sum_probs=45.4

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEEEEE
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSCLLT  165 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~lV~  165 (457)
                      ++.|+.|....+|++          ..+++|+......   .. .....|.++++.+...++ .+++++.  .+..++|+
T Consensus        23 i~~l~gG~tN~~~~~----------~~~vlR~~~~~~~---~~-~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~   86 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA----------GDLCLRIPGKGTE---EY-INRANEAVAAREAAKAGVSPEVLHVD--PATGVMVT   86 (301)
T ss_dssp             CEEEESCSSEEEEEE----------TTEEEEEECC-------C-CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEE
T ss_pred             eeEcCCcccccccee----------eeEEEECCCCCcc---ce-eCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEE
Confidence            678999999999987          2488998865311   11 112348888877743233 4666543  33457899


Q ss_pred             eec-CCCCh
Q 012762          166 EFC-PGGDL  173 (457)
Q Consensus       166 E~~-~~~sL  173 (457)
                      ||+ +|.+|
T Consensus        87 e~i~~g~~l   95 (301)
T 3dxq_A           87 RYIAGAQTM   95 (301)
T ss_dssp             ECCTTCEEC
T ss_pred             eecCCCccC
Confidence            999 77655

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.67  E-value=0.00013  Score=70.64  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=72.6

Q ss_pred             EEEecccCcce-EEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEEEEcCCcEEE
Q 012762           87 VHRLGSGDIGS-VYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        87 ~~~LG~G~fg~-Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~~~~~~~~~l  163 (457)
                      ++.|+.|.... +|+...     .++..+++|......      ...+..|+++++.|..  -.+.+++.+....+  ++
T Consensus        23 ~~~l~gg~s~~~~~r~~~-----~~~~~~vlk~~~~~~------~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~l   89 (333)
T 3csv_A           23 RTPLAGDASSRRYQRLRS-----PTGAKAVLMDWSPEE------GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LL   89 (333)
T ss_dssp             ECC--------CCEEEEC-----TTCCEEEEEECCTTT------TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EE
T ss_pred             eeECCCCCCCceEEEEEc-----CCCCeEEEEECCCCC------CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EE
Confidence            44566665554 666542     125667787754321      0223457778777742  33567777643333  78


Q ss_pred             EEeecCCCChHHHHHhC---------------------C---CCCCCHHHHH-------H-HH------------HHHHH
Q 012762          164 LTEFCPGGDLHVLRQRQ---------------------P---DKRFHESAVR-------F-YA------------SEVVV  199 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~---------------------~---~~~~~~~~~~-------~-i~------------~qi~~  199 (457)
                      |||++.+..+...+...                     .   ...+......       . +.            ..+..
T Consensus        90 l~e~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~  169 (333)
T 3csv_A           90 LIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEH  169 (333)
T ss_dssp             EECCCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHH
T ss_pred             EEeeCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            99999776664333211                     0   0112221111       0 00            01112


Q ss_pred             HHHHHH------HcCceeecCCCCCeEEccC----CCEEEeccCCCcCC
Q 012762          200 ALEFLH------MMGIIYRDLKPENVLVRSD----GHIMLTDFDLSLKG  238 (457)
Q Consensus       200 ~L~yLH------~~~iiHrDIKp~NIll~~~----~~vkl~DFG~s~~~  238 (457)
                      .+..+.      ...++|+|+.+.|||++.+    +.+.|+||+.+...
T Consensus       170 ~~~~l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          170 RFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             HHHHHHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             HHHHHHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            222331      2469999999999999874    67999999987544

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.58  E-value=0.00045  Score=66.45  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=47.6

Q ss_pred             EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC--CCCceEEEE-----EEcCCc
Q 012762           88 HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH--PFLPTLYAT-----LDCPRW  160 (457)
Q Consensus        88 ~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H--~nIv~l~~~-----~~~~~~  160 (457)
                      ..|+ |....||++...     +|+.+++|+......    ....+..|.++++.|..  -.+++++..     ...++.
T Consensus        32 ~~l~-g~~n~~y~v~~~-----~g~~~vlK~~~~~~~----~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~  101 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDE-----DRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGF  101 (328)
T ss_dssp             EEEC-CSSSEEEEECCT-----TCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTE
T ss_pred             Eeec-CcccceEEEEcC-----CCCEEEEEEcCCCCC----CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCE
Confidence            4566 888899987532     456799999864321    23345668888887732  224444443     223456


Q ss_pred             EEEEEeecCCCCh
Q 012762          161 SCLLTEFCPGGDL  173 (457)
Q Consensus       161 ~~lV~E~~~~~sL  173 (457)
                      .++||++++|..+
T Consensus       102 ~~~l~~~i~G~~~  114 (328)
T 1zyl_A          102 YFAVFPSVGGRQF  114 (328)
T ss_dssp             EEEEEECCCCEEC
T ss_pred             EEEEEEecCCCCC
Confidence            6899999987543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.42  E-value=0.00032  Score=70.54  Aligned_cols=79  Identities=24%  Similarity=0.299  Sum_probs=50.5

Q ss_pred             eEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCcE
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRWS  161 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~~  161 (457)
                      -++.|+.|....||++......   ...+..|++|+.....     ....+..|..+++.|...+ ..++++.+.+    
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~-----~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----  147 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-----TESHLVAESVIFTLLSERHLGPKLYGIFSG----  147 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-----CHHHHHHHHHHHHHHHHTTSSSCEEEEETT----
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC-----cHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----
Confidence            4567888999999999753210   0124679999984310     1123346888888884333 4677776643    


Q ss_pred             EEEEeecCCCCh
Q 012762          162 CLLTEFCPGGDL  173 (457)
Q Consensus       162 ~lV~E~~~~~sL  173 (457)
                      .+||||++|.+|
T Consensus       148 g~v~e~l~G~~l  159 (429)
T 1nw1_A          148 GRLEEYIPSRPL  159 (429)
T ss_dssp             EEEECCCCEEEC
T ss_pred             CEEEEEeCCccc
Confidence            289999987444

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.38  E-value=0.0005  Score=67.87  Aligned_cols=146  Identities=17%  Similarity=0.236  Sum_probs=84.4

Q ss_pred             CCceeEEEecccCcceEEEEEEecc---CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSK---SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDC  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~---~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~  157 (457)
                      +++.+ +.|..|....+|++.....   ....+..|++|+.....    .......+|.++++.|. +.-..++++++.+
T Consensus        51 ~~l~v-~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~  125 (379)
T 3feg_A           51 EELRV-YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL----QGVDSLVLESVMFAILAERSLGPQLYGVFPE  125 (379)
T ss_dssp             GGCCC-EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC-------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT
T ss_pred             CceEE-EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC
Confidence            34443 5677798999999875310   01134689999974321    12234457999988884 3334677777654


Q ss_pred             CCcEEEEEeecCCCChHH--------------HHH---hC--C-CCCC--CHHHHHHHHHHHHH----------------
Q 012762          158 PRWSCLLTEFCPGGDLHV--------------LRQ---RQ--P-DKRF--HESAVRFYASEVVV----------------  199 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~--------------~~~---~~--~-~~~~--~~~~~~~i~~qi~~----------------  199 (457)
                      +    +||||++|..|..              .+.   ..  + ....  -+..+..+..++..                
T Consensus       126 g----~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~  201 (379)
T 3feg_A          126 G----RLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYS  201 (379)
T ss_dssp             E----EEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTT
T ss_pred             c----cEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHH
Confidence            2    9999998866521              111   11  0 1111  23455555544422                


Q ss_pred             ---HHHHHHH--------cCceeecCCCCCeEEccC----CCEEEeccCCCc
Q 012762          200 ---ALEFLHM--------MGIIYRDLKPENVLVRSD----GHIMLTDFDLSL  236 (457)
Q Consensus       200 ---~L~yLH~--------~~iiHrDIKp~NIll~~~----~~vkl~DFG~s~  236 (457)
                         .+..|.+        ..++|+|+.+.|||++.+    +.+.|+||..+.
T Consensus       202 l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          202 LKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence               2334432        259999999999999876    789999999864

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.38  E-value=0.0012  Score=59.25  Aligned_cols=60  Identities=13%  Similarity=0.042  Sum_probs=44.7

Q ss_pred             CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEec
Q 012762          171 GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       171 ~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      .+|.+++... +.+++|++++.++.|.+.+|.-+-. ..-..+=+-|..|+|..+|.|-+.+
T Consensus        33 vSL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~   93 (229)
T 2yle_A           33 LSLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP   93 (229)
T ss_dssp             EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC
T ss_pred             ccHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc
Confidence            4788888765 4789999999999999999877622 1212333447899999999888764

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.29  E-value=0.0008  Score=66.04  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             eEEEecccCcceEEEEEEeccC----CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCc
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKS----SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRW  160 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~----~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~  160 (457)
                      -+..|+.|....+|++......    ...+..+++|+......   .. .....|.++++.|...+ +.++++.+  .  
T Consensus        37 ~~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~---~~-~~~~~E~~~l~~L~~~g~~P~~~~~~--~--  108 (369)
T 3c5i_A           37 RVKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD---EL-YNTISEFEVYKTMSKYKIAPQLLNTF--N--  108 (369)
T ss_dssp             EEEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG---GT-SCHHHHHHHHHHHHHTTSSCCEEEEE--T--
T ss_pred             EEEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc---ce-ecHHHHHHHHHHHHhcCCCCceEEec--C--
Confidence            3567888989999998753200    00125788998764311   11 11346888888874333 45777654  2  


Q ss_pred             EEEEEeecCCCCh
Q 012762          161 SCLLTEFCPGGDL  173 (457)
Q Consensus       161 ~~lV~E~~~~~sL  173 (457)
                      .++||||++|..+
T Consensus       109 ~~~v~e~i~G~~l  121 (369)
T 3c5i_A          109 GGRIEEWLYGDPL  121 (369)
T ss_dssp             TEEEEECCCSEEC
T ss_pred             CcEEEEEecCCcC
Confidence            3689999987543

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.25  E-value=0.0012  Score=64.10  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             cCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          207 MGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       207 ~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ..++|+|+.+.||+++.++.+.|+||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3599999999999999888899999987654

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=97.16  E-value=0.0032  Score=63.65  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC-ceEEEEEEcCCcEEEE
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL-PTLYATLDCPRWSCLL  164 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI-v~l~~~~~~~~~~~lV  164 (457)
                      -++.|+.|-...+|++....    .+..|++|+.....   ..... ...|..+|+.|...++ .++++++..    .+|
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~----~~~~~vLRi~g~~~---~~~id-R~~E~~vl~~L~~~gl~P~ll~~~~~----G~v  179 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMS----KQAKYLIRLYGPKT---DEIIN-REREKKISCILYNKNIAKKIYVFFTN----GRI  179 (458)
T ss_dssp             EEEEECC--CEEEEEEEETT----TTEEEEEEEECC-C---CSCSC-HHHHHHHHHHHTTSSSBCCEEEEETT----EEE
T ss_pred             EEEEcCCCeEeEEEEEEECC----CCceEEEEECCCCh---hhhcC-HHHHHHHHHHHHhcCCCCCEEEEeCC----eEE
Confidence            35678889999999987531    24678899875431   11111 1468999999865444 577877732    259


Q ss_pred             EeecCCCCh
Q 012762          165 TEFCPGGDL  173 (457)
Q Consensus       165 ~E~~~~~sL  173 (457)
                      |||++|..|
T Consensus       180 ~e~I~G~~l  188 (458)
T 2qg7_A          180 EEFMDGYAL  188 (458)
T ss_dssp             EECCCSEEC
T ss_pred             EEeeCCccC
Confidence            999987554

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.39  E-value=0.0045  Score=61.89  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             eEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCcE
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRWS  161 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~~  161 (457)
                      -++.|..|....+|++.......   ..+..|++|+.....   ....+ ..+|.++++.|. +.-..++++.+.    -
T Consensus        74 ~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t---~~~id-R~~E~~~l~~L~~~gi~P~l~~~~~----~  145 (424)
T 3mes_A           74 EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV---GKFYD-SKVELDVFRYLSNINIAPNIIADFP----E  145 (424)
T ss_dssp             EEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC----CCCC-HHHHHHHHHHHHHTTSSCCEEEEET----T
T ss_pred             EEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc---chhcC-HHHHHHHHHHHHhcCCCCCEEEEcC----C
Confidence            45677778899999988642110   015789999975431   11111 245888888874 333566776442    2


Q ss_pred             EEEEeecCCCCh
Q 012762          162 CLLTEFCPGGDL  173 (457)
Q Consensus       162 ~lV~E~~~~~sL  173 (457)
                      ++||||++|..|
T Consensus       146 ~~I~efI~G~~l  157 (424)
T 3mes_A          146 GRIEEFIDGEPL  157 (424)
T ss_dssp             EEEEECCCSEEC
T ss_pred             CEEEEEeCCccC
Confidence            689999998664

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=95.99  E-value=0.021  Score=56.63  Aligned_cols=28  Identities=29%  Similarity=0.468  Sum_probs=24.1

Q ss_pred             ceeecCCCCCeEE------ccCCCEEEeccCCCc
Q 012762          209 IIYRDLKPENVLV------RSDGHIMLTDFDLSL  236 (457)
Q Consensus       209 iiHrDIKp~NIll------~~~~~vkl~DFG~s~  236 (457)
                      ++|+|+.+.|||+      +.++.+.++||..|.
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            7899999999999      345789999998864

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=83.49  E-value=2.3  Score=37.96  Aligned_cols=82  Identities=7%  Similarity=-0.091  Sum_probs=56.6

Q ss_pred             CCCCCceEEEEEEcCCcEEEEEeecC-CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCceeecCCCCCeEE
Q 012762          144 DHPFLPTLYATLDCPRWSCLLTEFCP-GGDLHVLRQRQPDKRFHESAVRFYASEVVVALE-FLHMMGIIYRDLKPENVLV  221 (457)
Q Consensus       144 ~H~nIv~l~~~~~~~~~~~lV~E~~~-~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~-yLH~~~iiHrDIKp~NIll  221 (457)
                      .||++ . ..+-..++.+.+.++.-+ +.++. -+     ..++....+.++.+|+.... ++  ..-+|--|.|+||++
T Consensus        48 ~~~~f-~-~~I~~~eD~~~i~y~~~~~~~~f~-~i-----~~~~~~eKlrll~nl~~L~~~~~--~~r~tf~l~P~NL~f  117 (219)
T 4ano_A           48 VDPCI-V-RDIDVSEDEVKVVIKPPSSFLTFA-AI-----RKTTLLSRIRAAIHLVSKVKHHS--ARRLIFIVCPENLMF  117 (219)
T ss_dssp             SCSSS-E-EEEEECSSEEEEEEECCTTCEEHH-HH-----HTSCHHHHHHHHHHHHHHHSSCC--SSSEECCCCGGGEEE
T ss_pred             cCCCC-C-eEEEEeCCEEEEEEEcCcccCcHH-HH-----HhcCHHHHHHHHHHHHHHHHHhh--hCceeEEEeCceEEE
Confidence            67887 2 333356666666666542 23333 22     33788888888877776555 33  445777899999999


Q ss_pred             ccCCCEEEeccCCC
Q 012762          222 RSDGHIMLTDFDLS  235 (457)
Q Consensus       222 ~~~~~vkl~DFG~s  235 (457)
                      +.++.+++.-.|+-
T Consensus       118 ~~~~~p~i~hRGi~  131 (219)
T 4ano_A          118 NRALEPFFLHVGVK  131 (219)
T ss_dssp             CTTCCEEESCCEET
T ss_pred             eCCCcEEEEEcCCc
Confidence            99999999999985

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=81.13  E-value=0.1  Score=52.68  Aligned_cols=64  Identities=6%  Similarity=-0.054  Sum_probs=17.6

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEE------EEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAA------KVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAv------K~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+.++||   ||.||++.+..    ....||+      |..+.... .......+.+|..+++.++|+|+++.+++..
T Consensus       145 ~l~~~lG---fG~v~~g~~~~----~~~~Vav~~~~~~K~~~~~~~-~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYK----KHMPVLKETHDERDSTGQDGV-SEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             CSTTTSS---BCCC-------------CCBGGGC------------------------------------CBCCCEEE
T ss_pred             cccccCC---chhhhcccccc----cCCchhhhhccCccccccccc-cccccccccccccccccccccccCCCcceEE
Confidence            3455666   99999998863    2356788      65543322 2233345667888888899999999888754

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=80.35  E-value=1.7  Score=38.63  Aligned_cols=86  Identities=12%  Similarity=0.028  Sum_probs=61.5

Q ss_pred             CCCCCceEEEEEEcCCcEEEEEeecC-CCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc
Q 012762          144 DHPFLPTLYATLDCPRWSCLLTEFCP-GGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR  222 (457)
Q Consensus       144 ~H~nIv~l~~~~~~~~~~~lV~E~~~-~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~  222 (457)
                      .||+.+.. .+-..++.+.+.++.-. +.++.. +     ..++....+.++.+|+....++  ..-+|--|.|+||+++
T Consensus        43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-i-----k~~~~~eKlr~l~ni~~l~~~~--~~r~tf~L~P~NL~f~  113 (215)
T 4ann_A           43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-I-----KSFTKNEKLRYLLNIKNLEEVN--RTRYTFVLAPDELFFT  113 (215)
T ss_dssp             CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-G-----GGSCHHHHHHHHHHGGGGGGGG--GSSEECCCSGGGEEEC
T ss_pred             cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-H-----HhcCHHHHHHHHHHHHHHHHHh--cCceEEEEecceEEEc
Confidence            68888877 55566666666666532 223332 2     3478888888888888877444  3347778999999999


Q ss_pred             cCCCEEEeccCCCcCC
Q 012762          223 SDGHIMLTDFDLSLKG  238 (457)
Q Consensus       223 ~~~~vkl~DFG~s~~~  238 (457)
                      .++.+++.-.|+-..+
T Consensus       114 ~~~~p~i~~RGik~~l  129 (215)
T 4ann_A          114 RDGLPIAKTRGLQNVV  129 (215)
T ss_dssp             TTSCEEESCCEETTTB
T ss_pred             CCCCEEEEEccCccCC
Confidence            9999999999985443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-59
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-44
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-42
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	5e-41
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-39
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-23
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-37
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-36
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-24
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	7e-35
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-28
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-35
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-19
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-34
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-25
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-33
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-24
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-33
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-29
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-33
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-33
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-20
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-33
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-16
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-32
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-20
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-32
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-32
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-22
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-31
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-31
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-31
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	8e-26
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-31
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-31
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-15
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-31
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-30
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	7e-31
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-31
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	9e-31
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-14
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-30
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-17
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-30
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	9e-12
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-30
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-21
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-30
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	6e-30
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-20
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-30
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-16
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-29
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-29
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-17
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-29
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-29
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-16
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-29
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-19
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	6e-29
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	6e-29
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-22
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-28
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-23
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-28
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-14
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-10
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	5e-28
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	9e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	8e-28
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-28
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-27
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-27
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-27
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-25
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-27
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-13
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-27
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-25
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-24
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-13
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-24
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-24
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	8e-19
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-24
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-13
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	9e-24
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-11
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-13
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	5e-23
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	5e-11
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-22
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-14
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-22
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-14

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (495), Expect = 1e-59
 Identities = 91/355 (25%), Positives = 143/355 (40%), Gaps = 78/355 (21%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D +F   LG G   +V L +  +        +A K+++KR ++  NK      ER+++  
Sbjct: 9   DFKFGKILGEGSFSTVVLARELA----TSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDHPF   LY T            +   G+L    ++     F E+  RFY +E+V ALE
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALE 122

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           +LH  GII+RD                      LK +N                     D
Sbjct: 123 YLHGKGIIHRD----------------------LKPENILLN----------------ED 144

Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
             +    FG +  + P                              E    R+ SFVGT 
Sbjct: 145 MHIQITDFGTAKVLSP------------------------------ESKQARANSFVGTA 174

Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS 382
           +Y++PE+++ +    + D W LG  I++L  G  PF+  +  L    ++    +FP++  
Sbjct: 175 QYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEK-- 232

Query: 383 VPGPAKDLIAQLLVKDPTRRMGSK--MGATAIKRHQFFNGVNWALLRCAKPPFIP 435
               A+DL+ +LLV D T+R+G +   G   +K H FF  V W  L    PP + 
Sbjct: 233 FFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT 287

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (393), Expect = 4e-44
 Identities = 64/359 (17%), Positives = 107/359 (29%), Gaps = 106/359 (29%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI---LEMLDHP 146
           LG G  G V  +  K         FA K++              +  RE+         P
Sbjct: 20  LGLGINGKVLQIFNKR----TQEKFALKMLQDCP----------KARREVELHWRASQCP 65

Query: 147 FLPTLYATLDCPRWS----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            +  +    +          ++ E   GG+L    Q + D+ F E         +  A++
Sbjct: 66  HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 125

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPND 262
           +LH + I +RD+KPEN        ++ T                               +
Sbjct: 126 YLHSINIAHRDVKPEN--------LLYTSKR---------------------------PN 150

Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
             +    FG +     +                                     +   T 
Sbjct: 151 AILKLTDFGFAKETTSHN---------------------------------SLTTPCYTP 177

Query: 323 EYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE------ 376
            Y+APE++  E +  + D W+LG+ ++ L  G  PF           +  R         
Sbjct: 178 YYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFP 237

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
            P+   V    K LI  LL  +PT+R    M  T    H +        ++  K P  P
Sbjct: 238 NPEWSEVSEEVKMLIRNLLKTEPTQR----MTITEFMNHPWI-------MQSTKVPQTP 285

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 5e-42
 Identities = 60/348 (17%), Positives = 107/348 (30%), Gaps = 47/348 (13%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L   D   +  LG+G+ G V+ V  K     +G   A K++     +     ++   E +
Sbjct: 3   LKDDDFEKISELGAGNGGVVFKVSHKP----SGLVMARKLIHLE--IKPAIRNQIIRELQ 56

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +L   + P++   Y          +  E   GG L  + ++    R  E  +   +  V+
Sbjct: 57  VLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVI 114

Query: 199 VALEFLH-MMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ--SPPT 255
             L +L     I++RD+KP N+LV S G I L DF +S +  +S + + + +    SP  
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPER 174

Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS 315
                     D    G          +  ++                       P+    
Sbjct: 175 LQGTHYSVQSDIWSMG--------LSLVEMAVGRY-------------------PIPPPD 207

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
                  E         EG                  YG      +     L  +V    
Sbjct: 208 -----AKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP 262

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
                       +D + + L+K+P  R         +  H F    + 
Sbjct: 263 PKLPSGVFSLEFQDFVNKCLIKNPAER----ADLKQLMVHAFIKRSDA 306

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  146 bits (368), Expect = 5e-41
 Identities = 67/344 (19%), Positives = 109/344 (31%), Gaps = 76/344 (22%)

Query: 60  WKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVM 119
           ++   EA            + +S ++    +G+G+ G V    LK        F A K +
Sbjct: 9   FEDPNEAV-----REFAKEIDISCVKIEQVIGAGEFGEVCSGHLK-LPGKREIFVAIKTL 62

Query: 120 DKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR 179
                 +  +      E  I+   DHP +  L   +       ++TEF   G L     R
Sbjct: 63  KSG--YTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF-LR 119

Query: 180 QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD 239
           Q D +F    +      +   +++L  M  ++RDL   N+LV S+    ++DF LS    
Sbjct: 120 QNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLS---- 175

Query: 240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG 299
                  L  D S PT                                          LG
Sbjct: 176 -----RFLEDDTSDPT--------------------------------------YTSALG 192

Query: 300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPF 358
                   A                  PE I      +A D W+ GI ++E+  YG  P+
Sbjct: 193 GKIPIRWTA------------------PEAIQYRKFTSASDVWSYGIVMWEVMSYGERPY 234

Query: 359 KGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
             + ++  + N + +    P     P     L+     KD   R
Sbjct: 235 WDMTNQ-DVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHR 277

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-39
 Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 8/194 (4%)

Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
            L D      LG G  G+VYL + K     +    A KV+ K +L     E + R E EI
Sbjct: 4   ALEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLEKAGVEHQLRREVEI 59

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
              L HP +  LY          L+ E+ P G ++   Q+    +F E     Y +E+  
Sbjct: 60  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELAN 117

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ--SPPTGD 257
           AL + H   +I+RD+KPEN+L+ S G + + DF  S+   +S  T    +     P   +
Sbjct: 118 ALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIE 177

Query: 258 QQPNDCAVDQPPFG 271
            + +D  VD    G
Sbjct: 178 GRMHDEKVDLWSLG 191

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           R  +  GT +YL PE+I G  H   VD W+LG+  +E   G  PF+   ++ T   +   
Sbjct: 160 RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV 219

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG 420
              FP    V   A+DLI++LL  +P++R         +  H +   
Sbjct: 220 EFTFP--DFVTEGARDLISRLLKHNPSQR----PMLREVLEHPWITA 260

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 1e-37
 Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 17/196 (8%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  LG G  G VY  Q K          AAKV+D +   S  +     +E +IL   D
Sbjct: 15  EIIGELGDGAFGKVYKAQNK----ETSVLAAAKVIDTK---SEEELEDYMVEIDILASCD 67

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  L           +L EFC GG +  +     ++   ES ++    + + AL +L
Sbjct: 68  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYL 126

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ---------SPPT 255
           H   II+RDLK  N+L   DG I L DF +S K   +                      T
Sbjct: 127 HDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCET 186

Query: 256 GDQQPNDCAVDQPPFG 271
              +P D   D    G
Sbjct: 187 SKDRPYDYKADVWSLG 202

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 2e-18
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEII-----SGEGHGNAVDWWTLGIFIFEL 351
           KL + G        +  R  SF+GT  ++APE++         +    D W+LGI + E+
Sbjct: 150 KLADFGVSAKNTRTIQRRD-SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 208

Query: 352 FYGTTPFKGIDHELTLANVV-ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGAT 410
                P   ++    L  +  +      +        KD + + L K+   R       +
Sbjct: 209 AEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDAR----WTTS 264

Query: 411 AIKRHQFFNGVNWALLR 427
            + +H F    +   +R
Sbjct: 265 QLLQHPFVTVDSNKPIR 281

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  135 bits (341), Expect = 2e-36
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 12/199 (6%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           LT++D      +G G  G VY  +      + G  +A K +DK+ +  +  E+ A  ER 
Sbjct: 1   LTMNDFSVHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERI 56

Query: 139 ILEML---DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
           +L ++   D PF+  +      P     + +   GGDLH    +     F E+ +RFYA+
Sbjct: 57  MLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAA 114

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ---LVSDQS 252
           E+++ LE +H   ++YRDLKP N+L+   GH+ ++D  L+         A          
Sbjct: 115 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 174

Query: 253 PPTGDQQPNDCAVDQPPFG 271
                    D + D    G
Sbjct: 175 EVLQKGVAYDSSADWFSLG 193

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 3e-24
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 314 RSMSFVGTHEYLAPEII-SGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
           +  + VGTH Y+APE++  G  + ++ DW++LG  +F+L  G +PF+    +        
Sbjct: 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM 220

Query: 373 RALEFPKEP-SVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWALL--RC 428
                 + P S     + L+  LL +D  RR+G    GA  +K   FF  ++W ++  + 
Sbjct: 221 TLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQK 280

Query: 429 AKPPFIPRPVTCRD 442
             PP IP       
Sbjct: 281 YPPPLIPPRGEVNA 294

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (327), Expect = 7e-35
 Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 7/194 (3%)

Query: 80  TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREI 139
           +L D + +  LG+G  G V+L++ +     NG ++A KV+ K  +V   +      ER +
Sbjct: 2   SLQDFQILRTLGTGSFGRVHLIRSRH----NGRYYAMKVLKKEIVVRLKQVEHTNDERLM 57

Query: 140 LEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           L ++ HPF+  ++ T    +   ++ ++  GG+L      +  +RF     +FYA+EV +
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELF--SLLRKSQRFPNPVAKFYAAEVCL 115

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-LKGDNSTSTAQLVSDQSPPTGDQ 258
           ALE+LH   IIYRDLKPEN+L+  +GHI +TDF  +    D + +        +P     
Sbjct: 116 ALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVST 175

Query: 259 QPNDCAVDQPPFGN 272
           +P + ++D   FG 
Sbjct: 176 KPYNKSIDWWSFGI 189

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (280), Expect = 2e-28
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G     A+ +   + +  GT +Y+APE++S + +  ++DWW+ GI I+E+  G T
Sbjct: 144 KITDFGF----AKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYT 199

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRH 415
           PF   +   T   ++   L FP  P      KDL+++L+ +D ++R+G+ + G   +K H
Sbjct: 200 PFYDSNTMKTYEKILNAELRFP--PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 257

Query: 416 QFFNGVNWALL--RCAKPPFIPRPVTCRDLTTTN 447
            +F  V W  L  R  + P+ P P+      T+ 
Sbjct: 258 PWFKEVVWEKLLSRNIETPYEP-PIQQGQGDTSQ 290

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  129 bits (326), Expect = 7e-35
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 9/190 (4%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  +G G  G+VY  +       N    A K M      S  K      E   L+ L 
Sbjct: 18  SDLREIGHGSFGAVYFARDVR----NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP              + L+ E+C G    +L   +  K   E  +       +  L +L
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYL 131

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS---TAQLVSDQSPPTGDQQPN 261
           H   +I+RD+K  N+L+   G + L DF  +     + S   T   ++ +     D+   
Sbjct: 132 HSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQY 191

Query: 262 DCAVDQPPFG 271
           D  VD    G
Sbjct: 192 DGKVDVWSLG 201

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.0 bits (210), Expect = 5e-19
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGN---AVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
            + SFVGT  ++APE+I     G     VD W+LGI   EL     P   ++    L ++
Sbjct: 167 PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHI 226

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
                   +        ++ +   L K P  R      +  + +H+F 
Sbjct: 227 AQNESPALQSGHWSEYFRNFVDSCLQKIPQDR----PTSEVLLKHRFV 270

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (324), Expect = 3e-34
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 43  SAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQ 102
           +AA       + +        KE   +     + N   L     +  LG+G  G V LV+
Sbjct: 2   NAAAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVK 61

Query: 103 LKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC 162
            K     +G  +A K++DK+++V   +      E+ IL+ ++ PFL  L  +        
Sbjct: 62  HKE----SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY 117

Query: 163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR 222
           ++ E+  GG++    +R    RF E   RFYA+++V+  E+LH + +IYRDLKPEN+L+ 
Sbjct: 118 MVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID 175

Query: 223 SDGHIMLTDFDLSLKGDNSTSTAQ-LVSDQSPPTGDQQPNDCAVDQPPFG 271
             G+I +TDF  + +    T T        +P     +  + AVD    G
Sbjct: 176 QQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALG 225

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
            A+ +  R+ +  GT E LAPEII  +G+  AVDWW LG+ I+E+  G  PF        
Sbjct: 187 FAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI 246

Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGS-KMGATAIKRHQFFNGVNWAL 425
              +V+  + FP         KDL+  LL  D T+R G+ K G   IK H++F   +W  
Sbjct: 247 YEKIVSGKVRFP--SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA 304

Query: 426 L--RCAKPPFIPR 436
           +  R  + PFIP+
Sbjct: 305 IYQRKVEAPFIPK 317

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  127 bits (321), Expect = 1e-33
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 13/196 (6%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           L        LG+G  G V+ V  ++     G  FAAK +        + +   R E + +
Sbjct: 25  LDHYDIHEELGTGAFGVVHRVTERA----TGNNFAAKFVMTP---HESDKETVRKEIQTM 77

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
            +L HP L  L+   +      ++ EF  GG+L      +   +  E     Y  +V   
Sbjct: 78  SVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKG 136

Query: 201 LEFLHMMGIIYRDLKPENVLVRSD--GHIMLTDFDLSLKGDNSTSTAQLVSD---QSPPT 255
           L  +H    ++ DLKPEN++  +     + L DF L+   D   S           +P  
Sbjct: 137 LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEV 196

Query: 256 GDQQPNDCAVDQPPFG 271
            + +P     D    G
Sbjct: 197 AEGKPVGYYTDMWSVG 212

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 273 SSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG 332
            +  +   + P       KR  + KL + G    +            GT E+ APE+  G
Sbjct: 142 ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP--KQSVKVTTGTAEFAAPEVAEG 199

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDL 390
           +  G   D W++G+  + L  G +PF G + + TL NV +            +    KD 
Sbjct: 200 KPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDF 259

Query: 391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPV 438
           I +LL+ DP  R    M       H +    N        P      +
Sbjct: 260 IRKLLLADPNTR----MTIHQALEHPWLTPGNAPGRDSQIPSSRYTKI 303

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 1e-33
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +T++D  ++  LG G  G V LV+ K+     G ++A K++ K  ++++++ +    E  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKA----TGRYYAMKILRKEVIIAKDEVAHTVTESR 57

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +L+   HPFL  L          C + E+  GG+L     R+    F E   RFY +E+V
Sbjct: 58  VLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIV 115

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV----SDQSPP 254
            ALE+LH   ++YRD+K EN+++  DGHI +TDF L  +G +  +T +         +P 
Sbjct: 116 SALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPE 175

Query: 255 TGDQQPNDCAVDQPPFG 271
             +      AVD    G
Sbjct: 176 VLEDNDYGRAVDWWGLG 192

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G  +           +F GT EYLAPE++    +G AVDWW LG+ ++E+  G  
Sbjct: 145 KITDFGLCKEGISD-GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 203

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKM-GATAIKRH 415
           PF   DHE     ++   + FP+  ++   AK L+A LL KDP +R+G     A  +  H
Sbjct: 204 PFYNQDHERLFELILMEEIRFPR--TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261

Query: 416 QFFNGVNWALL--RCAKPPFIPR 436
           +FF  +NW  +  +   PPF P+
Sbjct: 262 RFFLSINWQDVVQKKLLPPFKPQ 284

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  126 bits (317), Expect = 2e-33
 Identities = 72/391 (18%), Positives = 124/391 (31%), Gaps = 76/391 (19%)

Query: 42  PSAAKTHHAPPRCNDDPCWKAIKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLV 101
           PS A+ +      +    +   +    E  N +        D + V +LG G    V+  
Sbjct: 4   PSRARVYTDV-NTHRPREYWDYESHVVEWGNQD--------DYQLVRKLGRGKYSEVFEA 54

Query: 102 QLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDCP-- 158
              +    N      K++         K+ + + E +ILE L   P + TL   +  P  
Sbjct: 55  INIT----NNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDPVS 104

Query: 159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPEN 218
           R   L+ E     D   L Q        +  +RFY  E++ AL++ H MGI++RD+KP N
Sbjct: 105 RTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHN 159

Query: 219 VLVRSDG-HIMLTDFDLSLKGDNSTSTAQLVS----DQSPPTGDQQPNDCAVDQPPFGNS 273
           V++  +   + L D+ L+            V+           D Q  D ++D       
Sbjct: 160 VMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSL--- 216

Query: 274 SCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE-IISG 332
                                           ++A  +  +   F G   Y     I   
Sbjct: 217 ------------------------------GCMLASMIFRKEPFFHGHDNYDQLVRIAKV 246

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA 392
            G  +  D+        +  +     +             R +    +  V   A D + 
Sbjct: 247 LGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWE------RFVHSENQHLVSPEALDFLD 300

Query: 393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
           +LL  D   R    + A     H +F  V  
Sbjct: 301 KLLRYDHQSR----LTAREAMEHPYFYTVVK 327

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 2e-33
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D   V  LG G  G V L   +          A K++D +  V   +    + E  I 
Sbjct: 4   VEDWDLVQTLGEGAYGEVQLAVNRV----TEEAVAVKIVDMKRAVDCPE--NIKKEICIN 57

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           +ML+H  +   Y          L  E+C GG+L    +   D    E   + +  +++  
Sbjct: 58  KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP--DIGMPEPDAQRFFHQLMAG 115

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
           + +LH +GI +RD+KPEN+L+    ++ ++DF L+     +     L
Sbjct: 116 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL 162

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 2e-20
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 297 KLGNPGTPEIVAEPLDVRSM-SFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYG 354
           K+ + G   +       R +    GT  Y+APE++     H   VD W+ GI +  +  G
Sbjct: 143 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 202

Query: 355 TTPFKGI-DHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIK 413
             P+    D     ++   +         +      L+ ++LV++P+ R    +    IK
Sbjct: 203 ELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSAR----ITIPDIK 258

Query: 414 RHQFFN 419
           + +++N
Sbjct: 259 KDRWYN 264

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 3e-33
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 10/166 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             +    R+GSG  G+VY  +            A K+++      +  +   + E  +L 
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD-------VAVKMLNVTAPTPQQLQ-AFKNEVGVLR 59

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              H  +         P    ++T++C G  L+       + +F    +   A +    +
Sbjct: 60  KTRHVNILLFMGYSTAP-QLAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGM 117

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL 247
           ++LH   II+RDLK  N+ +  D  + + DF L+      + + Q 
Sbjct: 118 DYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 297 KLGNPGTPEIVAEPLDVRSM-SFVGTHEYLAPEIISGEGHGN---AVDWWTLGIFIFELF 352
           K+G+ G   + +            G+  ++APE+I  +         D +  GI ++EL 
Sbjct: 144 KIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 203

Query: 353 YGTTPFKGIDHELTLANVVARALEFPK----EPSVPGPAKDLIAQLLVKDPTRR 402
            G  P+  I++   +  +V R    P       + P   K L+A+ L K    R
Sbjct: 204 TGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDER 257

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  123 bits (309), Expect = 1e-32
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 13/201 (6%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKES------RARIE 136
           +      LG G    V     K         +A K++D     S + E           E
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKP----TCKEYAVKIIDVTGGGSFSAEEVQELREATLKE 59

Query: 137 REILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYAS 195
            +IL  +  HP +  L  T +   +  L+ +    G+L      +      E   R    
Sbjct: 60  VDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMR 117

Query: 196 EVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPT 255
            ++  +  LH + I++RDLKPEN+L+  D +I LTDF  S + D      ++    S   
Sbjct: 118 ALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLA 177

Query: 256 GDQQPNDCAVDQPPFGNSSCI 276
            +        + P +G    +
Sbjct: 178 PEIIECSMNDNHPGYGKEVDM 198

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 89.0 bits (220), Expect = 1e-20
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 14/130 (10%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGE------GHGNAVDWWTLGIFIFE 350
           KL + G    +      +     GT  YLAPEII         G+G  VD W+ G+ ++ 
Sbjct: 150 KLTDFGFSCQLDP--GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYT 207

Query: 351 LFYGTTPFKGIDHELTLANVVARALEF--PKEPSVPGPAKDLIAQLLVKDPTRRMGSKMG 408
           L  G+ PF      L L  +++   +F  P+        KDL+++ LV  P +R      
Sbjct: 208 LLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKR----YT 263

Query: 409 ATAIKRHQFF 418
           A     H FF
Sbjct: 264 AEEALAHPFF 273

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 2e-32
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 18/202 (8%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           D   ++ +G+G  G    ++ KS    +G     K +D   +    K+     E  +L  
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKS----DGKILVWKELDYGSMTEAEKQ-MLVSEVNLLRE 59

Query: 143 LDHPFLPTLYA--TLDCPRWSCLLTEFCPGGDL--HVLRQRQPDKRFHESAVRFYASEVV 198
           L HP +   Y            ++ E+C GGDL   + +  +  +   E  V    +++ 
Sbjct: 60  LKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLT 119

Query: 199 VALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD--- 250
           +AL+  H        +++RDLKP NV +    ++ L DF L+   ++ TS A+       
Sbjct: 120 LALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPY 179

Query: 251 -QSPPTGDQQPNDCAVDQPPFG 271
             SP   ++   +   D    G
Sbjct: 180 YMSPEQMNRMSYNEKSDIWSLG 201

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 4e-18
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           KLG+ G   I+         +FVGT  Y++PE ++   +    D W+LG  ++EL     
Sbjct: 154 KLGDFGLARILNHDTSFAK-AFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMP 212

Query: 357 PFKGIDHELTLANVVARALEFPKEPS-VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH 415
           PF     +     +  R  +F + P        ++I ++L      R         I  +
Sbjct: 213 PFTAFSQKELAGKI--REGKFRRIPYRYSDELNEIITRMLNLKDYHR----PSVEEILEN 266

Query: 416 QF 417
             
Sbjct: 267 PL 268

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  123 bits (309), Expect = 5e-32
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 13/192 (6%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  LGSG  G V+    K+     G  F AK ++    + +      + E  I+  L 
Sbjct: 32  DILEELGSGAFGVVHRCVEKA----TGRVFVAKFINTPYPLDKY---TVKNEISIMNQLH 84

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP L  L+   +      L+ EF  GG+L      + D +  E+ V  Y  +    L+ +
Sbjct: 85  HPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHM 143

Query: 205 HMMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLKGDNSTSTAQLV---SDQSPPTGDQQ 259
           H   I++ D+KPEN++  +     + + DF L+ K +               +P   D++
Sbjct: 144 HEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDRE 203

Query: 260 PNDCAVDQPPFG 271
           P     D    G
Sbjct: 204 PVGFYTDMWAIG 215

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 95.9 bits (238), Expect = 2e-22
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 288 LHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIF 347
              K+    K+ + G    +    D        T E+ APEI+  E  G   D W +G+ 
Sbjct: 160 CETKKASSVKIIDFGLATKLNP--DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVL 217

Query: 348 IFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGS 405
            + L  G +PF G D   TL NV     EF ++   SV   AKD I  LL K+P +R   
Sbjct: 218 GYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKR--- 274

Query: 406 KMGATAIKRHQFFNGVNWALLR 427
            +       H +  G +  L  
Sbjct: 275 -LTVHDALEHPWLKGDHSNLTS 295

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-31
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L + +L+ +  +G G+ G V L   +      G   A K +                E  
Sbjct: 4   LNMKELKLLQTIGKGEFGDVMLGDYR------GNKVAVKCIKNDA-----TAQAFLAEAS 52

Query: 139 ILEMLDHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEV 197
           ++  L H  L  L    ++      ++TE+   G L    + +         +  ++ +V
Sbjct: 53  VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDV 112

Query: 198 VVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQL-VSDQSPPTG 256
             A+E+L     ++RDL   NVLV  D    ++DF L+ +  ++  T +L V   +P   
Sbjct: 113 CEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEAL 172

Query: 257 DQQPNDCAVDQPPFG 271
            ++      D   FG
Sbjct: 173 REKKFSTKSDVWSFG 187

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 1e-14
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 308 AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELT 366
            +       +     ++ APE +  +      D W+ GI ++E++ +G  P+  I  +  
Sbjct: 150 TKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV 209

Query: 367 LANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           +  V  +  +       P    +++      D   R
Sbjct: 210 VPRVE-KGYKMDAPDGCPPAVYEVMKNCWHLDAAMR 244

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  120 bits (301), Expect = 1e-31
 Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 78/326 (23%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           +   R+G G  G ++          N    A K   +R     +   + R E    ++L 
Sbjct: 8   KVGRRIGEGSFGVIFEGTNLL----NNQQVAIKFEPRR-----SDAPQLRDEYRTYKLLA 58

Query: 145 H-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +P +Y        + L+ +        +L      ++F    V   A +++  ++ 
Sbjct: 59  GCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQS 116

Query: 204 LHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDC 263
           +H   ++YRD+KP+N         ++                               N  
Sbjct: 117 IHEKSLVYRDIKPDN--------FLIGR-------------------------PNSKNAN 143

Query: 264 AVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE 323
            +    FG                        K   +P T + +         +  GT  
Sbjct: 144 MIYVVDFGMV----------------------KFYRDPVTKQHIPYR---EKKNLSGTAR 178

Query: 324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPS- 382
           Y++     G       D   LG        G+ P++G+    T      R  E  +    
Sbjct: 179 YMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA-TNKQKYERIGEKKQSTPL 237

Query: 383 ------VPGPAKDLIAQLLVKDPTRR 402
                  P      +           
Sbjct: 238 RELCAGFPEEFYKYMHYARNLAFDAT 263

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-31
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 12/218 (5%)

Query: 63  IKEATSEGNNNNNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKR 122
           +K      N   +   + + +   +  LG+G  G V+LV+ K    + G  +A KV+ K 
Sbjct: 5   VKHELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVR-KISGHDTGKLYAMKVLKKA 63

Query: 123 ELVSRNKES-RARIEREILEMLDH-PFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQ 180
            +V + K +   R ER++LE +   PFL TL+          L+ ++  GG+L     ++
Sbjct: 64  TIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR 123

Query: 181 PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN 240
              RF E  V+ Y  E+V+ALE LH +GIIYRD+K EN+L+ S+GH++LTDF LS +   
Sbjct: 124 E--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA 181

Query: 241 STSTAQLVSDQSPPT-------GDQQPNDCAVDQPPFG 271
             +        +          G    +D AVD    G
Sbjct: 182 DETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLG 219

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 8e-26
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 286 SCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG--EGHGNAVDWWT 343
             +         L + G  +        R+  F GT EY+AP+I+ G   GH  AVDWW+
Sbjct: 158 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWS 217

Query: 344 LGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLVKDPTR 401
           LG+ ++EL  G +PF     + + A +  R L+        +   AKDLI +LL+KDP +
Sbjct: 218 LGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKK 277

Query: 402 RMGS-KMGATAIKRHQFFNGVNWALLRCAK--PPFIPR 436
           R+G     A  IK H FF  +NW  L   K   PF P 
Sbjct: 278 RLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPV 315

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 4e-31
 Identities = 64/346 (18%), Positives = 116/346 (33%), Gaps = 54/346 (15%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           +S    + ++G G  G V+  + +      G   A K +             A  E +IL
Sbjct: 9   VSKYEKLAKIGQGTFGEVFKARHRK----TGQKVALKKVLMENE-KEGFPITALREIKIL 63

Query: 141 EMLDHPFLPTLY--------ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
           ++L H  +  L             C     L+ +FC      +L       +F  S ++ 
Sbjct: 64  QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL--VKFTLSEIKR 121

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQS 252
               ++  L ++H   I++RD+K  NVL+  DG + L DF L+     + ++        
Sbjct: 122 VMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNR 181

Query: 253 PPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLD 312
             T   +P +  + +  +G    +     +                        +AE   
Sbjct: 182 VVTLWYRPPELLLGERDYGPPIDLWGAGCI------------------------MAEMW- 216

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVA 372
            RS    G  E     +IS             G    E++     ++  +    +     
Sbjct: 217 TRSPIMQGNTEQHQLALIS----------QLCGSITPEVWPNVDNYELYEKLELVKGQKR 266

Query: 373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
           +  +  K       A DLI +LLV DP +R    + +     H FF
Sbjct: 267 KVKDRLKAYVRDPYALDLIDKLLVLDPAQR----IDSDDALNHDFF 308

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 5e-31
 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
            DL F+  LG+G  G V   + +          A K++ +  +     E     E +++ 
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWR-----GQYDVAIKMIKEGSM----SEDEFIEEAKVMM 54

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L H  L  LY      R   ++TE+   G L    +     RF    +     +V  A+
Sbjct: 55  NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAM 113

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQLVSD---QSPPTG 256
           E+L     ++RDL   N LV   G + ++DF LS  +  D  TS+           P   
Sbjct: 114 EYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVL 173

Query: 257 DQQPNDCAVDQPPFG 271
                    D   FG
Sbjct: 174 MYSKFSSKSDIWAFG 188

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 4/129 (3%)

Query: 275 CIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEG 334
             +   +           +   K+ + G    V +     S+       +  PE++    
Sbjct: 120 QFLHRDLAA--RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK 177

Query: 335 HGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ 393
             +  D W  G+ ++E++  G  P++   +  T  ++  + L   +          ++  
Sbjct: 178 FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIA-QGLRLYRPHLASEKVYTIMYS 236

Query: 394 LLVKDPTRR 402
              +    R
Sbjct: 237 CWHEKADER 245

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-31
 Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 11/196 (5%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + D      LG G  G V+L + K        FFA K + K  ++  +      +E+ +L
Sbjct: 1   IEDFILHKMLGKGSFGKVFLAEFKK----TNQFFAIKALKKDVVLMDDDVECTMVEKRVL 56

Query: 141 EM-LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            +  +HPFL  ++ T         + E+  GGDL    Q     +F  S   FYA+E+++
Sbjct: 57  SLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIIL 114

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV----SDQSPPT 255
            L+FLH  GI+YRDLK +N+L+  DGHI + DF +  +     +            +P  
Sbjct: 115 GLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI 174

Query: 256 GDQQPNDCAVDQPPFG 271
              Q  + +VD   FG
Sbjct: 175 LLGQKYNHSVDWWSFG 190

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 2e-30
 Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 7/134 (5%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV 371
           D ++ +F GT +Y+APEI+ G+ + ++VDWW+ G+ ++E+  G +PF G D E    ++ 
Sbjct: 157 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIR 216

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL--RCA 429
                +P+   +   AKDL+ +L V++P +R+G       I++H  F  +NW  L  +  
Sbjct: 217 MDNPFYPR--WLEKEAKDLLVKLFVREPEKRLGV---RGDIRQHPLFREINWEELERKEI 271

Query: 430 KPPFIPRPVTCRDL 443
            PPF P+  +  D 
Sbjct: 272 DPPFRPKVKSPFDC 285

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 7e-31
 Identities = 62/360 (17%), Positives = 119/360 (33%), Gaps = 57/360 (15%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           + +  +GSG  G V                A K + +    ++    RA  E  +++ ++
Sbjct: 20  QNLKPIGSGAQGIVCAAYDAV----LDRNVAIKKLSR-PFQNQTHAKRAYRELVLMKCVN 74

Query: 145 HPFLPTLY------ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           H  + +L        TL+  +   L+ E        V++     +R     + +   +++
Sbjct: 75  HKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHER-----MSYLLYQML 129

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLV---SDQSPPT 255
             ++ LH  GII+RDLKP N++V+SD  + + DF L+     S      V     ++P  
Sbjct: 130 CGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEV 189

Query: 256 GDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS 315
                    VD    G        CI+  +                       +  +   
Sbjct: 190 ILGMGYKENVDIWSVG--------CIMGEMVRHKI----------LFPGRDYIDQWN--- 228

Query: 316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL 375
                       ++I   G         L   +         + G+       + +  A 
Sbjct: 229 ------------KVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPA- 275

Query: 376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
           +          A+DL++++LV DP +R    +      +H + N         A PP I 
Sbjct: 276 DSEHNKLKASQARDLLSKMLVIDPAKR----ISVDDALQHPYINVWYDPAEVEAPPPQIY 331

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 8e-31
 Identities = 53/340 (15%), Positives = 103/340 (30%), Gaps = 56/340 (16%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             +  +G G  G V           N    A K +   E   +    R   E +IL    
Sbjct: 11  TNLSYIGEGAYGMVCSAYDNV----NKVRVAIKKISPFE--HQTYCQRTLREIKILLRFR 64

Query: 145 HPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           H  +  +   +  P         L+T         +L+ +          + ++  +++ 
Sbjct: 65  HENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILR 120

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQ 259
            L+++H   +++RDLKP N+L+ +   + + DF L+   D                    
Sbjct: 121 GLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH----------------- 163

Query: 260 PNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV 319
                 D   F            P +        +   + + G   I+AE L  R +   
Sbjct: 164 ------DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGC--ILAEMLSNRPIFPG 215

Query: 320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
             +      I+   G  +  D   +       +  + P K       L            
Sbjct: 216 KHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF----------- 264

Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
            P+    A DL+ ++L  +P +R    +       H +  
Sbjct: 265 -PNADSKALDLLDKMLTFNPHKR----IEVEQALAHPYLE 299

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 9e-31
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             L+ V RLG+G  G V++              A K + +  +           E  +++
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYN-----GHTKVAVKSLKQGSM----SPDAFLAEANLMK 63

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L H  L  LYA +       ++TE+   G L    +     +   + +   A+++   +
Sbjct: 64  QLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS-----TSTAQLVSDQSPPTG 256
            F+     I+RDL+  N+LV       + DF L+   +++           +   +P   
Sbjct: 123 AFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAI 182

Query: 257 DQQPNDCAVDQPPFG 271
           +        D   FG
Sbjct: 183 NYGTFTIKSDVWSFG 197

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 2/130 (1%)

Query: 273 SSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG 332
               I   +  A   +      K  + + G   ++ +             ++ APE I+ 
Sbjct: 127 ERNYIHRDLRAANILVSDTLSCK--IADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY 184

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA 392
                  D W+ GI + E+               +   + R     +  + P     L+ 
Sbjct: 185 GTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMR 244

Query: 393 QLLVKDPTRR 402
               + P  R
Sbjct: 245 LCWKERPEDR 254

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-30
 Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 10/196 (5%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
           DLR + +LG G  G V   +     S      A K +    L           E   +  
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWD-APSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 143 LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
           LDH  L  LY  +  P    ++TE  P G L   R R+    F    +  YA +V   + 
Sbjct: 68  LDHRNLIRLYGVVLTPPM-KMVTELAPLGSLL-DRLRKHQGHFLLGTLSRYAVQVAEGMG 125

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ-------SPPT 255
           +L     I+RDL   N+L+ +   + + DF L      +     +   +       +P +
Sbjct: 126 YLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES 185

Query: 256 GDQQPNDCAVDQPPFG 271
              +    A D   FG
Sbjct: 186 LKTRTFSHASDTWMFG 201

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 8e-17
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVV 371
           V          + APE +      +A D W  G+ ++E+F YG  P+ G++    L  + 
Sbjct: 169 VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKID 228

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                 P+    P    +++ Q     P  R
Sbjct: 229 KEGERLPRPEDCPQDIYNVMVQCWAHKPEDR 259

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (292), Expect = 3e-30
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           +  +D+   H+LG G  G VY    K          A K + +       +      E  
Sbjct: 14  MERTDITMKHKLGGGQYGEVYEGVWK----KYSLTVAVKTLKE----DTMEVEEFLKEAA 65

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +++ + HP L  L           ++TEF   G+L    +    +      + + A+++ 
Sbjct: 66  VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS 125

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
            A+E+L     I+RDL   N LV  +  + + DF LS      T TA
Sbjct: 126 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA 172

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (153), Expect = 9e-12
 Identities = 13/106 (12%), Positives = 34/106 (32%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G   ++               ++ APE ++        D W  G+ ++E+     
Sbjct: 155 KVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM 214

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                     +  ++ +     +    P    +L+      +P+ R
Sbjct: 215 SPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDR 260

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 4e-30
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
               ++G G  G+VY     +     G   A + M+ +    + K+     E  ++    
Sbjct: 23  TRFEKIGQGASGTVYTAMDVA----TGQEVAIRQMNLQ---QQPKKELIINEILVMRENK 75

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           +P +     +        ++ E+  GG L  +          E  +     E + ALEFL
Sbjct: 76  NPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFL 132

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD----QSPPTGDQQP 260
           H   +I+RD+K +N+L+  DG + LTDF    +     S    +       +P    ++ 
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 192

Query: 261 NDCAVD 266
               VD
Sbjct: 193 YGPKVD 198

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (225), Expect = 4e-21
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           +  + VGT  ++APE+++ + +G  VD W+LGI   E+  G  P+   +    L  +   
Sbjct: 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN 231

Query: 374 A-LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPP 432
              E      +    +D + + L  D  +R      A  + +HQF         + AKP 
Sbjct: 232 GTPELQNPEKLSAIFRDFLNRCLDMDVEKR----GSAKELLQHQFL--------KIAKPL 279

Query: 433 FIPRPV 438
               P+
Sbjct: 280 SSLTPL 285

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 4e-30
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           LG G+ GSV     + +        A KV+ +     +        E +I+  LD+P++ 
Sbjct: 17  LGCGNFGSVRQGVYRMR--KKQIDVAIKVLKQG--TEKADTEEMMREAQIMHQLDNPYIV 72

Query: 150 TLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGI 209
            L           L+ E   GG LH        +    S V     +V + +++L     
Sbjct: 73  RLIGVCQAEAL-MLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSMGMKYLEEKNF 130

Query: 210 IYRDLKPENVLVRSDGHIMLTDFDLS 235
           ++RDL   NVL+ +  +  ++DF LS
Sbjct: 131 VHRDLAARNVLLVNRHYAKISDFGLS 156

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 6e-30
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           L+F   +G G   +VY               A   +  R+L    ++ R + E E+L+ L
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKLTKSERQ-RFKEEAEMLKGL 65

Query: 144 DHPFLPTLYATLDCP----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            HP +   Y + +      +   L+TE    G L    +R   K      +R +  +++ 
Sbjct: 66  QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILK 123

Query: 200 ALEFLHMMG--IIYRDLKPENVLVRS-DGHIMLTDFDLSLKGDNSTSTA 245
            L+FLH     II+RDLK +N+ +    G + + D  L+     S + A
Sbjct: 124 GLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKA 172

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 2e-20
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
            + + +GT E++APE+     +  +VD +  G+ + E+     P+    +   +   V  
Sbjct: 169 FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS 227

Query: 374 ALEFPKEPSVPGP-AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
            ++      V  P  K++I   + ++   R         +  H FF
Sbjct: 228 GVKPASFDKVAIPEVKEIIEGCIRQNKDER----YSIKDLLNHAFF 269

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 7e-30
 Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             LR   +LG G  G V++              A K +                E ++++
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWN-----GTTRVAIKTLKP----GTMSPEAFLQEAQVMK 67

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L H  L  LYA +       ++TE+   G L    + +  K      +   A+++   +
Sbjct: 68  KLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 126

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD-----QSPPTG 256
            ++  M  ++RDL+  N+LV  +    + DF L+   +++  TA+  +       +P   
Sbjct: 127 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAA 186

Query: 257 DQQPNDCAVDQPPFG 271
                    D   FG
Sbjct: 187 LYGRFTIKSDVWSFG 201

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 22/106 (20%), Positives = 35/106 (33%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G   ++ +             ++ APE           D W+ GI + EL     
Sbjct: 153 KVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 212

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                     + + V R    P  P  P    DL+ Q   K+P  R
Sbjct: 213 VPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEER 258

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 1e-29
 Identities = 55/341 (16%), Positives = 102/341 (29%), Gaps = 64/341 (18%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             + ++G G  G+V+  + +          A K +   +       S A  E  +L+ L 
Sbjct: 5   EKLEKIGEGTYGTVFKAKNRE----THEIVALKRVRLDDD-DEGVPSSALREICLLKELK 59

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           H  +  L+  L   +   L+ EFC             +       V+ +  +++  L F 
Sbjct: 60  HKNIVRLHDVLHSDKKLTLVFEFCDQDLKK--YFDSCNGDLDPEIVKSFLFQLLKGLGFC 117

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD-----QSPPTGDQQ 259
           H   +++RDLKP+N+L+  +G + L +F L+                            +
Sbjct: 118 HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAK 177

Query: 260 PNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV 319
               ++D    G                                  I AE  +     F 
Sbjct: 178 LYSTSIDMWSAGC---------------------------------IFAELANAGRPLFP 204

Query: 320 GTHEY-LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP 378
           G         I    G      W ++        Y   P       +             
Sbjct: 205 GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVV------------ 252

Query: 379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFN 419
             P +    +DL+  LL  +P +R    + A    +H +F+
Sbjct: 253 --PKLNATGRDLLQNLLKCNPVQR----ISAEEALQHPYFS 287

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 2e-29
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 17/200 (8%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           LTL D      LGSG+ G+V     + K        A K++ K E      +     E  
Sbjct: 8   LTLED----KELGSGNFGTVKKGYYQMKKV--VKTVAVKIL-KNEANDPALKDELLAEAN 60

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           +++ LD+P++  +    +   W  L+ E    G L+   Q+   +   +  +     +V 
Sbjct: 61  VMQQLDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVS 117

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ------- 251
           + +++L     ++RDL   NVL+ +  +  ++DF LS       +  +  +         
Sbjct: 118 MGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

Query: 252 SPPTGDQQPNDCAVDQPPFG 271
           +P   +        D   FG
Sbjct: 178 APECINYYKFSSKSDVWSFG 197

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 2e-17
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVAR 373
                   ++ APE I+     +  D W+ G+ ++E F YG  P++G+     +  ++ +
Sbjct: 167 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-EVTAMLEK 225

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
                     P    DL+      D   R G         R+ +++ VN 
Sbjct: 226 GERMGCPAGCPREMYDLMNLCWTYDVENRPGFA-AVELRLRNYYYDVVNE 274

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  114 bits (285), Expect = 2e-29
 Identities = 54/334 (16%), Positives = 101/334 (30%), Gaps = 54/334 (16%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
             + ++G G  G VY  Q        G  FA K +   +       S    E  IL+ L 
Sbjct: 5   HGLEKIGEGTYGVVYKAQNNY-----GETFALKKIRLEKE-DEGIPSTTIREISILKELK 58

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           H  +  LY  +   +   L+ E        +L   +          + +  +++  + + 
Sbjct: 59  HSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYC 116

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCA 264
           H   +++RDLKP+N+L+  +G + + DF L+                             
Sbjct: 117 HDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT------------------ 158

Query: 265 VDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEY 324
                      +      P V     K      + + G   I AE ++   +    +   
Sbjct: 159 --------HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGC--IFAEMVNGTPLFPGVSEAD 208

Query: 325 LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVP 384
               I    G  N+ +W  +          T                           + 
Sbjct: 209 QLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFL--------------KGLD 254

Query: 385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFF 418
               DL++++L  DP +R    + A     H +F
Sbjct: 255 ESGIDLLSKMLKLDPNQR----ITAKQALEHAYF 284

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 5e-29
 Identities = 50/195 (25%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S+L FV  +GSG  G V+L         N    A K + +        E     E E++ 
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIRE----GAMSEEDFIEEAEVMM 55

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            L HP L  LY         CL+ EF   G L    + Q    F    +     +V   +
Sbjct: 56  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG-LFAAETLLGMCLDVCEGM 114

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQLVSD---QSPPTG 256
            +L    +I+RDL   N LV  +  I ++DF ++  +  D  TS+          SP   
Sbjct: 115 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVF 174

Query: 257 DQQPNDCAVDQPPFG 271
                    D   FG
Sbjct: 175 SFSRYSSKSDVWSFG 189

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 1e-16
 Identities = 15/106 (14%), Positives = 35/106 (33%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTT 356
           K+ + G    V +     S       ++ +PE+ S   + +  D W+ G+ ++E+F    
Sbjct: 141 KVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 200

Query: 357 PFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                     +   ++      K          ++     + P  R
Sbjct: 201 IPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDR 246

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  112 bits (282), Expect = 5e-29
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 18/206 (8%)

Query: 78  PLTLSD-LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE 136
           P  LSD       LG G +  V+L +            A KV+        +   R R E
Sbjct: 2   PSHLSDRYELGEILGFGGMSEVHLARDLR----LHRDVAVKVLRADLARDPSFYLRFRRE 57

Query: 137 REILEMLDHPFLPTLYATLDCP----RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRF 192
            +    L+HP +  +Y T +          ++ E+  G  L  +   +            
Sbjct: 58  AQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIE 115

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQ- 251
             ++   AL F H  GII+RD+KP N+++ +   + + DF ++    +S ++    +   
Sbjct: 116 VIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVI 175

Query: 252 ------SPPTGDQQPNDCAVDQPPFG 271
                 SP        D   D    G
Sbjct: 176 GTAQYLSPEQARGDSVDARSDVYSLG 201

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 85.2 bits (210), Expect = 4e-19
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 2/138 (1%)

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
           F + + II   + PA   +      K            +     ++ + +GT +YL+PE 
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQ 185

Query: 330 ISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPA 387
             G+      D ++LG  ++E+  G  PF G          V      P      +    
Sbjct: 186 ARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADL 245

Query: 388 KDLIAQLLVKDPTRRMGS 405
             ++ + L K+P  R  +
Sbjct: 246 DAVVLKALAKNPENRYQT 263

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 6e-29
 Identities = 64/361 (17%), Positives = 113/361 (31%), Gaps = 70/361 (19%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R +  +GSG  G+V            G   A K +  R   S     RA  E  +L+ + 
Sbjct: 21  RDLQPVGSGAYGAVCSAVDGR----TGAKVAIKKL-YRPFQSELFAKRAYRELRLLKHMR 75

Query: 145 HPFLPTLY------ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           H  +  L        TLD      L+  F       +++     ++  E  ++F   +++
Sbjct: 76  HENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH----EKLGEDRIQFLVYQML 131

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP--TG 256
             L ++H  GII+RDLKP N+ V  D  + + DF L+ + D+  +   +      P    
Sbjct: 132 KGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVIL 191

Query: 257 DQQPNDCAVDQPPFGNSSCIIPNCIV--PAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR 314
           +       VD    G   CI+   I             + K+ +   GTP          
Sbjct: 192 NWMRYTQTVDIWSVG---CIMAEMITGKTLFKGSDHLDQLKEIMKVTGTP---------- 238

Query: 315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA 374
                       P         +    +  G+   E     +                  
Sbjct: 239 ------------PAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPL---------- 276

Query: 375 LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFI 434
                       A +L+ ++LV D  +R    + A     H +F  ++          + 
Sbjct: 277 ------------AVNLLEKMLVLDAEQR----VTAGEALAHPYFESLHDTEDEPQVQKYD 320

Query: 435 P 435
            
Sbjct: 321 D 321

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 6e-29
 Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 14/187 (7%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
                LG G+ G V+     S    +   + AK +  +       +   + E  IL +  
Sbjct: 8   MIAEDLGRGEFGIVHRCVETS----SKKTYMAKFVKVK----GTDQVLVKKEISILNIAR 59

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           H  +  L+ + +      ++ EF  G D+            +E  +  Y  +V  AL+FL
Sbjct: 60  HRNILHLHESFESMEELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFL 118

Query: 205 HMMGIIYRDLKPENVLVRSD--GHIMLTDFDLSLK---GDNSTSTAQLVSDQSPPTGDQQ 259
           H   I + D++PEN++ ++     I + +F  + +   GDN           +P      
Sbjct: 119 HSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHD 178

Query: 260 PNDCAVD 266
               A D
Sbjct: 179 VVSTATD 185

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 3e-22
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 12/183 (6%)

Query: 273 SSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISG 332
           S  I    I P       +R    K+   G    +               EY APE+   
Sbjct: 120 SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL--KPGDNFRLLFTAPEYYAPEVHQH 177

Query: 333 EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDL 390
           +    A D W+LG  ++ L  G  PF    ++  + N++     F +E    +   A D 
Sbjct: 178 DVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDF 237

Query: 391 IAQLLVKDPTRRMGSKMGATAIKRHQFFNG----VNWALLRCAKPPFIPRPVTCRDLTTT 446
           + +LLVK+   R    M A+   +H +       V+  ++R  K       +  +DL   
Sbjct: 238 VDRLLVKERKSR----MTASEALQHPWLKQKIERVSTKVIRTLKHRRYYHTLIKKDLNMV 293

Query: 447 NSS 449
            S+
Sbjct: 294 VSA 296

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (280), Expect = 2e-28
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
            F   LG+G    V L + K          A K + K+ L    KE     E  +L  + 
Sbjct: 12  DFRDVLGTGAFSEVILAEDKR----TQKLVAIKCIAKKAL--EGKEGSMENEIAVLHKIK 65

Query: 145 HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           HP +  L    +      L+ +   GG+L      +    + E        +V+ A+++L
Sbjct: 66  HPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYL 123

Query: 205 HMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLKGDNSTSTAQLVSD---QSPPTGDQ 258
           H +GI++RDLKPEN+L  S   D  IM++DF LS   D  +  +         +P    Q
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 183

Query: 259 QPNDCAVDQPPFG 271
           +P   AVD    G
Sbjct: 184 KPYSKAVDCWSIG 196

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.6 bits (240), Expect = 5e-23
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 10/170 (5%)

Query: 270 FGNSSCIIPNCIVPA-VSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPE 328
           + +   I+   + P  +         K  + + G  ++          +  GT  Y+APE
Sbjct: 122 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP--GSVLSTACGTPGYVAPE 179

Query: 329 IISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGP 386
           +++ + +  AVD W++G+  + L  G  PF   +       ++    EF       +   
Sbjct: 180 VLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDS 239

Query: 387 AKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPR 436
           AKD I  L+ KDP +R           +H +  G + AL +        +
Sbjct: 240 AKDFIRHLMEKDPEKR----FTCEQALQHPWIAG-DTALDKNIHQSVSEQ 284

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-28
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
             +     +G G  G V+     S         A  +   +   S +   +   E   + 
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMS---PENPALAVAIKTCKNCTSDSVREKFLQEALTMR 63

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             DHP +  L   +       ++ E C  G+L    Q +       +++  YA ++  AL
Sbjct: 64  QFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTAL 121

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTST 244
            +L     ++RD+   NVLV S+  + L DF LS   ++ST  
Sbjct: 122 AYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY 164

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 8e-14
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGT 355
           KLG+ G    + +    ++       +++APE I+     +A D W  G+ ++E+  +G 
Sbjct: 148 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 207

Query: 356 TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            PF+G+ +   +  +       P  P+ P     L+ +    DP+RR
Sbjct: 208 KPFQGVKNNDVIGRIE-NGERLPMPPNCPPTLYSLMTKCWAYDPSRR 253

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 25/196 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKS-KSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           +++ +V  +G G  G V+  +             A K++ +    S + ++  + E  ++
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE--ASADMQADFQREAALM 70

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH-VLRQRQP------------------ 181
              D+P +  L       +  CLL E+   GDL+  LR   P                  
Sbjct: 71  AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 130

Query: 182 ---DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG 238
                    +     A +V   + +L     ++RDL   N LV  +  + + DF LS   
Sbjct: 131 SPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 190

Query: 239 DNSTSTAQLVSDQSPP 254
            ++       +D  P 
Sbjct: 191 YSADYYKADGNDAIPI 206

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-28
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 24/193 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + L F   LG+G  G V          S+     A K++      S +   R  +  E+ 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKP----SAHLTEREALMSELK 78

Query: 141 EM---LDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDK-------------- 183
            +    +H  +  L         + ++TE+C  GDL    +R+ D               
Sbjct: 79  VLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDD 138

Query: 184 --RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS 241
                   +  ++ +V   + FL     I+RDL   N+L+       + DF L+    N 
Sbjct: 139 ELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 242 TSTAQLVSDQSPP 254
           ++     + + P 
Sbjct: 199 SNYVVKGNARLPV 211

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVV 371
           V   +     +++APE I    +    D W+ GIF++ELF  G++P+ G+  +     ++
Sbjct: 202 VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 261

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                       P    D++      DP +R
Sbjct: 262 KEGFRMLSPEHAPAEMYDIMKTCWDADPLKR 292

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 5e-28
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 22/211 (10%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  +D++F   +G G+ G V   ++K     +G    A +   +E  S++       E E
Sbjct: 7   LDWNDIKFQDVIGEGNFGQVLKARIK----KDGLRMDAAIKRMKEYASKDDHRDFAGELE 62

Query: 139 ILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQR--------------QPDK 183
           +L  L  HP +  L    +   +  L  E+ P G+L    ++                  
Sbjct: 63  VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 122

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
                 +  +A++V   +++L     I+RDL   N+LV  +    + DF LS   +    
Sbjct: 123 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 182

Query: 244 TAQLV---SDQSPPTGDQQPNDCAVDQPPFG 271
                      +  + +        D   +G
Sbjct: 183 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYG 213

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 9e-13
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANV 370
            V+         ++A E ++   +    D W+ G+ ++E+   G TP+ G+     L   
Sbjct: 180 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA-ELYEK 238

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           + +     K  +      DL+ Q   + P  R
Sbjct: 239 LPQGYRLEKPLNCDDEVYDLMRQCWREKPYER 270

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 8e-28
 Identities = 62/343 (18%), Positives = 111/343 (32%), Gaps = 54/343 (15%)

Query: 81  LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
           + + + V ++G G  G VY  + K      G   A K + + +  +    S A  E  +L
Sbjct: 1   MENFQKVEKIGEGTYGVVYKARNKL----TGEVVALKKI-RLDTETEGVPSTAIREISLL 55

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVA 200
           + L+HP +  L   +       L+ EF        +             ++ Y  +++  
Sbjct: 56  KELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASAL-TGIPLPLIKSYLFQLLQG 114

Query: 201 LEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQP 260
           L F H   +++RDLKP+N+L+ ++G I L DF L+                         
Sbjct: 115 LAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR----------------- 157

Query: 261 NDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG 320
                          +      P +            + + G    +   +  R   F G
Sbjct: 158 ---------TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG---CIFAEMVTRRALFPG 205

Query: 321 THEY-LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK 379
             E      I    G  + V W                    D++ +      +      
Sbjct: 206 DSEIDQLFRIFRTLGTPDEVVW-------------PGVTSMPDYKPSFPKWARQDFS-KV 251

Query: 380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN 422
            P +    + L++Q+L  DP +R    + A A   H FF  V 
Sbjct: 252 VPPLDEDGRSLLSQMLHYDPNKR----ISAKAALAHPFFQDVT 290

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 9e-28
 Identities = 59/354 (16%), Positives = 108/354 (30%), Gaps = 66/354 (18%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLP 149
           +G+G  G VY  +L     ++G   A K + +        +     E +I+  LDH  + 
Sbjct: 28  IGNGSFGVVYQAKLC----DSGELVAIKKVLQ-------DKRFKNRELQIMRKLDHCNIV 76

Query: 150 TLYATLDCP------RWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALE 202
            L              +  L+ ++ P     V R   +  +      V+ Y  ++  +L 
Sbjct: 77  RLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA 136

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIM-LTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPN 261
           ++H  GI +RD+KP+N+L+  D  ++ L DF  + +          +  +     +    
Sbjct: 137 YIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFG 196

Query: 262 DCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT 321
                               V +  C                  ++AE L  + +    +
Sbjct: 197 ATDYTSS-----------IDVWSAGC------------------VLAELLLGQPIFPGDS 227

Query: 322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
                 EII   G                             E     + A        P
Sbjct: 228 GVDQLVEIIKVLGTPTREQIRE--------------MNPNYTEFKFPQIKAHPWTKVFRP 273

Query: 382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
             P  A  L ++LL   PT R    +       H FF+ +    ++       P
Sbjct: 274 RTPPEAIALCSRLLEYTPTAR----LTPLEACAHSFFDELRDPNVKLPNGRDTP 323

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-27
 Identities = 66/356 (18%), Positives = 110/356 (30%), Gaps = 71/356 (19%)

Query: 90  LGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPF 147
           LG G   +VY  + K    N     A K +                 RE  +L+ L HP 
Sbjct: 6   LGEGQFATVYKARDK----NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN 61

Query: 148 LPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMM 207
           +  L           L+ +F       +++          S ++ Y    +  LE+LH  
Sbjct: 62  IIGLLDAFGHKSNISLVFDFMETDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH 119

Query: 208 GIIYRDLKPENVLVRSDGHIMLTDFDLS--LKGDNSTSTAQLVSDQ--SPPT-GDQQPND 262
            I++RDLKP N+L+  +G + L DF L+      N   T Q+V+    +P      +   
Sbjct: 120 WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYG 179

Query: 263 CAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH 322
             VD    G   CI+   ++                     P               G  
Sbjct: 180 VGVDMWAVG---CILAELLL-------------------RVP------------FLPGDS 205

Query: 323 EY-LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP 381
           +      I    G      W  +      + + + P   + H  + A      L      
Sbjct: 206 DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDL------ 259

Query: 382 SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRP 437
                    I  L + +P  R    + AT   + ++F+              +PRP
Sbjct: 260 ---------IQGLFLFNPCAR----ITATQALKMKYFSNRPGP----TPGCQLPRP 298

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 1e-27
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 39/230 (16%)

Query: 60  WKAIKEATSEGNNNNNNNPLTL----------SDLRFVHRLGSGDIGSVYLVQLK-SKSS 108
            + ++   S  N     +               +L F   LGSG  G V          +
Sbjct: 5   LQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKT 64

Query: 109 NNGCFFAAKVMDKRELVSRNKESRARIEREI---LEMLDHPFLPTLYATLDCPRWSCLLT 165
                 A K++ ++     +   R  +  E+    ++  H  +  L           L+ 
Sbjct: 65  GVSIQVAVKMLKEKA----DSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIF 120

Query: 166 EFCPGGDLH---------------------VLRQRQPDKRFHESAVRFYASEVVVALEFL 204
           E+C  GDL                       L + +         +  +A +V   +EFL
Sbjct: 121 EYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFL 180

Query: 205 HMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
                ++RDL   NVLV     + + DF L+    + ++     + + P 
Sbjct: 181 EFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPV 230

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 4e-14
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 313 VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVV 371
           V   +     +++APE +    +    D W+ GI ++E+F  G  P+ GI  +     ++
Sbjct: 221 VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLI 280

Query: 372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
               +  +          ++      D  +R
Sbjct: 281 QNGFKMDQPFYATEEIYIIMQSCWAFDSRKR 311

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-27
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 16/192 (8%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV-SRNKESRARIERE--ILE 141
                LGSG    V   + KS     G  +AAK + KR    SR   SR  IERE  IL+
Sbjct: 13  DTGEELGSGQFAVVKKCREKS----TGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 68

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
            + HP + TL+   +      L+ E   GG+L      +  +   E     +  +++  +
Sbjct: 69  EIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGV 126

Query: 202 EFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFDLSLKGDNSTSTAQLVSDQ---SPP 254
            +LH + I + DLKPEN+++         I + DF L+ K D       +       +P 
Sbjct: 127 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPE 186

Query: 255 TGDQQPNDCAVD 266
             + +P     D
Sbjct: 187 IVNYEPLGLEAD 198

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
              +  GT E++APEI++ E  G   D W++G+  + L  G +PF G   + TLANV A 
Sbjct: 172 EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAV 231

Query: 374 ALEFPKE--PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW--ALLRCA 429
             EF  E   +    AKD I +LLVKDP +R    M      +H +    +   AL    
Sbjct: 232 NYEFEDEYFSNTSALAKDFIRRLLVKDPKKR----MTIQDSLQHPWIKPKDTQQALSSAW 287

Query: 430 KPP 432
             P
Sbjct: 288 SHP 290

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-27
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 4/176 (2%)

Query: 79  LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
           L  ++ + +  LGSG  G+VY      +        A K +  RE  S         E  
Sbjct: 6   LKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL--REATSPKANKEILDEAY 63

Query: 139 ILEMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           ++  +D+P +  L           L+T+  P G L    +   D       +  +  ++ 
Sbjct: 64  VMASVDNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKD-NIGSQYLLNWCVQIA 121

Query: 199 VALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP 254
             + +L    +++RDL   NVLV++  H+ +TDF L+               + P 
Sbjct: 122 KGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 177

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 4e-13
 Identities = 20/108 (18%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 297 KLGNPGTPEIV-AEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELF-YG 354
           K+ + G  +++ AE  +  +       +++A E I    + +  D W+ G+ ++EL  +G
Sbjct: 151 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 210

Query: 355 TTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
           + P+ GI     +++++ +    P+ P        ++ +  + D   R
Sbjct: 211 SKPYDGIPAS-EISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSR 257

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 4e-27
 Identities = 65/350 (18%), Positives = 110/350 (31%), Gaps = 69/350 (19%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML- 143
             V  +G G  G V+  +      N G F A K +  +        S  R E  +L  L 
Sbjct: 10  ECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGEEGMPLSTIR-EVAVLRHLE 65

Query: 144 --DHPFLPTLYATLDCPRWS-----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASE 196
             +HP +  L+      R        L+ E         L +  P+       ++    +
Sbjct: 66  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQ 124

Query: 197 VVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD---QSP 253
           ++  L+FLH   +++RDLKP+N+LV S G I L DF L+       +   +V     ++P
Sbjct: 125 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAP 184

Query: 254 PTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV 313
               Q      VD    G                                  I AE    
Sbjct: 185 EVLLQSSYATPVDLWSVG---------------------------------CIFAEMFRR 211

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
           + +    +      +I+   G     DW        + F+  +                 
Sbjct: 212 KPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQP-------------- 257

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW 423
                    +    KDL+ + L  +P +R    + A +   H +F  +  
Sbjct: 258 --IEKFVTDIDELGKDLLLKCLTFNPAKR----ISAYSALSHPYFQDLER 301

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 63/359 (17%), Positives = 108/359 (30%), Gaps = 66/359 (18%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           + +  +GSG  GSV            G   A K + +    S     R   E  +L+ + 
Sbjct: 21  QNLSPVGSGAYGSVCAAFDTK----TGLRVAVKKLSR-PFQSIIHAKRTYRELRLLKHMK 75

Query: 145 HPFLPTLYATLDCPRW-----SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
           H  +  L       R         L     G DL+ + + Q   +  +  V+F   +++ 
Sbjct: 76  HENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILR 132

Query: 200 ALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPP--TGD 257
            L+++H   II+RDLKP N+ V  D  + + DF L+   D+  +          P    +
Sbjct: 133 GLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLN 192

Query: 258 QQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS 317
               +  VD    G     +                                        
Sbjct: 193 WMHYNQTVDIWSVGCIMAELLTGRTL---------------------------------- 218

Query: 318 FVGTHEY-LAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE 376
           F GT        I+   G   A     +       +  +        ++  ANV      
Sbjct: 219 FPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM---PKMNFANVF----- 270

Query: 377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIP 435
                     A DL+ ++LV D  +R    + A     H +F   +         P+  
Sbjct: 271 ----IGANPLAVDLLEKMLVLDSDKR----ITAAQALAHAYFAQYHDPDDEPVADPYDQ 321

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 40/214 (18%), Positives = 69/214 (32%), Gaps = 26/214 (12%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKS---KSSNNGCFFAAKVMDKRELVSRNKESRARIERE 138
             L     LG G  G V L +         N     A K++      +    S    E E
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD--ATEKDLSDLISEME 70

Query: 139 ILEML-DHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVL--------------RQRQPDK 183
           +++M+  H  +  L           ++ E+   G+L                     P++
Sbjct: 71  MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 130

Query: 184 RFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS 243
           +     +   A +V   +E+L     I+RDL   NVLV  D  + + DF L+    +   
Sbjct: 131 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY 190

Query: 244 TAQLVSDQSPP------TGDQQPNDCAVDQPPFG 271
             +  + + P           +      D   FG
Sbjct: 191 YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 224

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 9e-13
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 2/117 (1%)

Query: 287 CLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGI 346
            L  +    K        +I       ++ +     +++APE +    + +  D W+ G+
Sbjct: 166 VLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGV 225

Query: 347 FIFELF-YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            ++E+F  G +P+ G+  E  L  ++       K  +       ++       P++R
Sbjct: 226 LLWEIFTLGGSPYPGVPVE-ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQR 281

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 47/332 (14%), Positives = 100/332 (30%), Gaps = 65/332 (19%)

Query: 83  DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEM 142
            +     +G G  G V+  + +      G   A K+   RE  S  +E     E     M
Sbjct: 4   TIVLQESIGKGRFGEVWRGKWR------GEEVAVKIFSSREERSWFRE----AEIYQTVM 53

Query: 143 LDHPFLPTLYATLDCPRWS----CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVV 198
           L H  +    A  +    +     L++++   G L     R          +   A    
Sbjct: 54  LRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT---VTVEGMIKLALSTA 110

Query: 199 VALEFLHM--------MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD 250
             L  LHM          I +RDLK +N+LV+ +G   + D  L+++ D++T T  +  +
Sbjct: 111 SGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPN 170

Query: 251 QSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP 310
               T                    + P  +  +++  H +  ++               
Sbjct: 171 HRVGT-----------------KRYMAPEVLDDSINMKHFESFKR--------------- 198

Query: 311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV 370
                 + +     +  EI      G   + +   +  ++L       + +   +    +
Sbjct: 199 ------ADIYAMGLVFWEIARRCSIGGIHEDY--QLPYYDLVPSDPSVEEMRKVVCEQKL 250

Query: 371 VARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                   +          ++ +    +   R
Sbjct: 251 RPNIPNRWQSCEALRVMAKIMRECWYANGAAR 282

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (248), Expect = 2e-24
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 14/196 (7%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNK---ESRARIEREILE 141
           +    LGSG  GSVY     S    +    A K ++K  +    +    +R  +E  +L+
Sbjct: 7   QVGPLLGSGGFGSVYSGIRVS----DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLK 62

Query: 142 MLD--HPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVV 199
            +      +  L    + P    L+ E             +      E   R +  +V+ 
Sbjct: 63  KVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITER-GALQEELARSFFWQVLE 121

Query: 200 ALEFLHMMGIIYRDLKPENVLV-RSDGHIMLTDFDLSLKGDNSTSTAQLVSD-QSPP--T 255
           A+   H  G+++RD+K EN+L+  + G + L DF       ++  T    +   SPP   
Sbjct: 122 AVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWI 181

Query: 256 GDQQPNDCAVDQPPFG 271
              + +  +      G
Sbjct: 182 RYHRYHGRSAAVWSLG 197

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 8e-19
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 270 FGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEI 329
             ++  ++   I    + L    R + KL + G+  ++ +        F GT  Y  PE 
Sbjct: 125 HCHNCGVLHRDIKDE-NILIDLNRGELKLIDFGSGALLKDT---VYTDFDGTRVYSPPEW 180

Query: 330 ISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAK 388
           I     HG +   W+LGI ++++  G  PF+  +       ++   + F     V    +
Sbjct: 181 IRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFR--QRVSSECQ 232

Query: 389 DLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV 421
            LI   L   P+ R         I+ H +   V
Sbjct: 233 HLIRWCLALRPSDR----PTFEEIQNHPWMQDV 261

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =   99 bits (248), Expect = 4e-24
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 15/172 (8%)

Query: 85  RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD 144
           R   ++GSG  G +YL    +     G   A K+   +      K  +  IE +I +M+ 
Sbjct: 10  RLGRKIGSGSFGDIYLGTDIA----AGEEVAIKLECVK-----TKHPQLHIESKIYKMMQ 60

Query: 145 HP-FLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEF 203
               +PT+        ++ ++ E                ++F    V   A +++  +E+
Sbjct: 61  GGVGIPTIRWCGAEGDYNVMVMELLGPSLED--LFNFCSRKFSLKTVLLLADQMISRIEY 118

Query: 204 LHMMGIIYRDLKPENVLVRSDGH---IMLTDFDLSLKGDNSTSTAQLVSDQS 252
           +H    I+RD+KP+N L+        + + DF L+ K  ++ +   +   ++
Sbjct: 119 IHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYREN 170

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.3 bits (166), Expect = 2e-13
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 6/95 (6%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
            + +  GT  Y +     G       D  +LG  +     G+ P++G+            
Sbjct: 169 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI 228

Query: 374 A---LEFPKE---PSVPGPAKDLIAQLLVKDPTRR 402
           +   +  P E      P      +          +
Sbjct: 229 SEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDK 263

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 9e-24
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 11/182 (6%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSN-NGCFFAAKVMDKRELVSRNKESRARIEREIL 140
             +     LG G  G VY    K    +      A K +++    S  +      E  ++
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVM 77

Query: 141 EMLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLH--------VLRQRQPDKRFHESAVRF 192
           +  +   +  L   +   + + ++ E    GDL          +           S +  
Sbjct: 78  KEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQ 137

Query: 193 YASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQS 252
            A E+   + +L+    ++RDL   N +V  D  + + DF ++     +    +      
Sbjct: 138 MAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLL 197

Query: 253 PP 254
           P 
Sbjct: 198 PV 199

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 272 NSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP-LDVRSMSFVGTHEYLAPEII 330
           N++  +   +      +      K  +G+ G    + E     +    +    +++PE +
Sbjct: 150 NANKFVHRDLAARNCMVAEDFTVK--IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESL 207

Query: 331 SGEGHGNAVDWWTLGIFIFELF-YGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKD 389
                    D W+ G+ ++E+      P++G+ +E  L  V+   L   K  + P    +
Sbjct: 208 KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGL-LDKPDNCPDMLFE 266

Query: 390 LIAQLLVKDPTRR 402
           L+      +P  R
Sbjct: 267 LMRMCWQYNPKMR 279

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 3e-23
 Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE 141
           S +     +G+G+ G VY   LK+ S       A K +      +  +      E  I+ 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMG 64

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
              H  +  L   +   +   ++TE+   G L     R+ D  F    +      +   +
Sbjct: 65  QFSHHNIIRLEGVISKYKPMMIITEYMENGALDKF-LREKDGEFSVLQLVGMLRGIAAGM 123

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS-LKGDNSTSTAQLVSDQSPP 254
           ++L  M  ++RDL   N+LV S+    ++DF LS +  D+  +T      + P 
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPI 177

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 2e-13
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 297 KLGNPGTPEIVAEPLDVRSMS--FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG 354
           K+ + G   ++ +  +    +        + APE IS     +A D W+ GI ++E+   
Sbjct: 150 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 209

Query: 355 TTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                       +   +      P     P     L+ Q   ++  RR
Sbjct: 210 GERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARR 257

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 5e-23
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 19/225 (8%)

Query: 82  SDLRFVHRLGSGDIGSVYLVQLK-SKSSNNGCFFAAKVMDKRELVSRNKESRARIEREIL 140
             L+    LG G  G V          +      A K++ +    S ++   + ++  ++
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI-LI 71

Query: 141 EMLDHPFLPTL-YATLDCPRWSCLLTEFCPGGDLHVLRQRQPDK--------------RF 185
            +  H  +  L  A         ++ EFC  G+L    + + ++                
Sbjct: 72  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 131

Query: 186 HESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTA 245
               +  Y+ +V   +EFL     I+RDL   N+L+     + + DF L+          
Sbjct: 132 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 191

Query: 246 QLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHP 290
           +    + P        +   D+     S       ++  +  L  
Sbjct: 192 RKGDARLPL--KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA 234

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 5e-11
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 297 KLGNPGTPEIVAEPLD-VRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT 355
           K+ + G    + +  D VR        +++APE I    +    D W+ G+ ++E+F   
Sbjct: 174 KICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG 233

Query: 356 -TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
            +P+ G+  +      +                   +      +P++R
Sbjct: 234 ASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQR 281

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 1e-22
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 13/197 (6%)

Query: 84  LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML 143
           + F   +G G  G VY   L   +       A K +++  +    + S+   E  I++  
Sbjct: 29  VHFNEVIGRGHFGCVYHGTLL-DNDGKKIHCAVKSLNR--ITDIGEVSQFLTEGIIMKDF 85

Query: 144 DHPFLPTLY-ATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALE 202
            HP + +L    L       ++  +   GDL    + +      +  + F   +V   ++
Sbjct: 86  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF-GLQVAKGMK 144

Query: 203 FLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS--------LKGDNSTSTAQLVSDQSPP 254
           FL     ++RDL   N ++     + + DF L+            N T     V   +  
Sbjct: 145 FLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALE 204

Query: 255 TGDQQPNDCAVDQPPFG 271
           +   Q      D   FG
Sbjct: 205 SLQTQKFTTKSDVWSFG 221

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 5e-14
 Identities = 11/89 (12%), Positives = 29/89 (32%)

Query: 314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVAR 373
                    +++A E +  +      D W+ G+ ++EL     P     +   +   + +
Sbjct: 190 NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ 249

Query: 374 ALEFPKEPSVPGPAKDLIAQLLVKDPTRR 402
                +    P P  +++ +        R
Sbjct: 250 GRRLLQPEYCPDPLYEVMLKCWHPKAEMR 278

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.3 bits (233), Expect = 8e-22
 Identities = 56/423 (13%), Positives = 120/423 (28%), Gaps = 136/423 (32%)

Query: 80  TLSDLRF--VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIER 137
              D R+  V +LG G   +V+L +       N    A K++   ++ +   E   ++ +
Sbjct: 9   PYKDARYILVRKLGWGHFSTVWLAKDMV----NNTHVAMKIVRGDKVYTEAAEDEIKLLQ 64

Query: 138 EI-------LEMLDHPFLPTLYATLDCPRWSCL---LTEFCPGGDLHVLRQRQPDKRFHE 187
            +        + +    +  L    +    + +   +     G +L  L ++   +    
Sbjct: 65  RVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPL 124

Query: 188 SAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQ 246
             V+  + ++++ L+++H   GII+ D+KPEN        +++                 
Sbjct: 125 IYVKQISKQLLLGLDYMHRRCGIIHTDIKPEN--------VLME---------------- 160

Query: 247 LVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEI 306
                     D   N   +     GN+     +                           
Sbjct: 161 --------IVDSPENLIQIKIADLGNACWYDEHY-------------------------- 186

Query: 307 VAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELT 366
                     + + T EY +PE++ G   G   D W+    IFEL  G   F+  +    
Sbjct: 187 ---------TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSY 237

Query: 367 LANVVARAL----------------------------------------------EFPKE 380
             +    A                                               ++   
Sbjct: 238 TKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFS 297

Query: 381 PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFIPRPVTC 440
                   D ++ +L  DP +R      A  +  H +    +   +   + P      + 
Sbjct: 298 KDEAKEISDFLSPMLQLDPRKR----ADAGGLVNHPWLK--DTLGMEEIRVPDRELYGSG 351

Query: 441 RDL 443
            D+
Sbjct: 352 SDI 354

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 68.7 bits (167), Expect = 3e-14
 Identities = 24/169 (14%), Positives = 44/169 (26%), Gaps = 18/169 (10%)

Query: 89  RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN-------KESRARIEREILE 141
            +G G   +V+    +            K         +         +    +      
Sbjct: 7   LMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSA 61

Query: 142 MLDHPFLPTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVAL 201
             +   L  L               +     L  L   +   R            ++  +
Sbjct: 62  RNEFRALQKLQ---GLAVPKVY--AWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEV 116

Query: 202 EFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSD 250
              +  GI++ DL   NVLV S+  I + DF  S++         L  D
Sbjct: 117 AKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVEVGEEGWREILERD 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.94
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.66
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.2
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.07
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.42
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.07
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.03

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-65  Score=492.74  Aligned_cols=280  Identities=34%  Similarity=0.609  Sum_probs=245.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|++++.||+|+||+||+|+++    .+|+.||||++.+...........+.+|+++|++++|||||++++++.+++
T Consensus         6 ~p~dy~i~~~lG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~   81 (288)
T d1uu3a_           6 RPEDFKFGKILGEGSFSTVVLAREL----ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDE   81 (288)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSS
T ss_pred             CCCCCEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECC
Confidence            4478999999999999999999987    478999999999887766677788999999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++...
T Consensus        82 ~~~ivmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~  159 (288)
T d1uu3a_          82 KLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS  159 (288)
T ss_dssp             EEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecc
Confidence            999999999999999888775  679999999999999999999999999999999999999999999999999987654


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                    .....+.+
T Consensus       160 ~~~~--------------------------------------------------------------------~~~~~~~~  171 (288)
T d1uu3a_         160 PESK--------------------------------------------------------------------QARANSFV  171 (288)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             cCCc--------------------------------------------------------------------cccccccc
Confidence            2111                                                                    01122457


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+....+.++....+.+|.  .+++++++||.+||+.||
T Consensus       172 GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~dP  249 (288)
T d1uu3a_         172 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPE--KFFPKARDLVEKLLVLDA  249 (288)
T ss_dssp             CCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCT--TCCHHHHHHHHTTSCSSG
T ss_pred             CCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHccCCH
Confidence            999999999999999999999999999999999999999998888888888888777665  489999999999999999


Q ss_pred             CCCCCCCc--ChHHHhcCCCCCCCCchhhhccCCCCCC
Q 012762          400 TRRMGSKM--GATAIKRHQFFNGVNWALLRCAKPPFIP  435 (457)
Q Consensus       400 ~~Rps~~~--~~~~ll~hp~f~~~~~~~~~~~~~~~~~  435 (457)
                      ++|||..+  ....|++||||++++|..+....||-+|
T Consensus       250 ~~R~t~~e~~~~~~i~~Hpff~~i~w~~l~~~~pP~l~  287 (288)
T d1uu3a_         250 TKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT  287 (288)
T ss_dssp             GGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCCC
T ss_pred             hHCcCHHHHcCCHHHHcCCccCCCCHHHhhcCCCCCCC
Confidence            99999322  1234799999999999999998888775

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-64  Score=494.72  Aligned_cols=287  Identities=36%  Similarity=0.704  Sum_probs=255.9

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +.+++|++++.||+|+||+||+|+++    .+|+.||||++++...........+.+|+++|++++||||+++++++.+.
T Consensus         2 i~l~dy~~~~~lG~G~fg~V~~~~~~----~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~   77 (337)
T d1o6la_           2 VTMNDFDYLKLLGKGTFGKVILVREK----ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH   77 (337)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS
T ss_pred             CchHhcEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccc
Confidence            56789999999999999999999987    48899999999988776667778889999999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +.+|||||||+||+|..++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++..
T Consensus        78 ~~~~iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~  155 (337)
T d1o6la_          78 DRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             cccccceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeeccccccc
Confidence            9999999999999999988875  67999999999999999999999999999999999999999999999999998754


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                      ....++
T Consensus       156 ~~~~----------------------------------------------------------------------~~~~~~  165 (337)
T d1o6la_         156 ISDG----------------------------------------------------------------------ATMKTF  165 (337)
T ss_dssp             CCTT----------------------------------------------------------------------CCBCCC
T ss_pred             ccCC----------------------------------------------------------------------cccccc
Confidence            3211                                                                      112245


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      +||+.|||||++.+..|+.++|||||||++|||++|++||.+.+....+..+....+.+|..  +++++++||.+||+.|
T Consensus       166 ~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~--~s~~~~dli~~~L~~d  243 (337)
T d1o6la_         166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRT--LSPEAKSLLAGLLKKD  243 (337)
T ss_dssp             EECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT--SCHHHHHHHHHHTCSS
T ss_pred             eeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCcc--CCHHHHHHHHhhccCC
Confidence            79999999999999999999999999999999999999999999888888888888777754  9999999999999999


Q ss_pred             CCCCCCCCc-ChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCcccc
Q 012762          399 PTRRMGSKM-GATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDL  443 (457)
Q Consensus       399 P~~Rps~~~-~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~  443 (457)
                      |.+|++... .++||++||||++++|..+  +...||++|......|.
T Consensus       244 P~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P~~~~~~~~  291 (337)
T d1o6la_         244 PKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDT  291 (337)
T ss_dssp             TTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTTCC
T ss_pred             chhhcccccccHHHHHcCcccccCCHHHHHhCCCCCCCCCCCCChhhh
Confidence            999996432 3899999999999999877  45678999877655543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-63  Score=484.12  Aligned_cols=279  Identities=34%  Similarity=0.688  Sum_probs=247.6

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|+++++||+|+||+||+|+++    .+|+.||||++++.........+.+.+|+++|+.++|||||++++++.+++
T Consensus         2 sl~dy~i~~~lG~G~fg~Vy~a~~~----~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   77 (316)
T d1fota_           2 SLQDFQILRTLGTGSFGRVHLIRSR----HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ   77 (316)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSS
T ss_pred             chhHeEEEEEEecCcCcEEEEEEEC----CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCC
Confidence            4678999999999999999999987    478999999999877666667788999999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|+|||||+||+|..++...  ..+++..++.++.||+.||+|||++|||||||||+||||+.+|.+||+|||+++...
T Consensus        78 ~~~ivmE~~~gg~l~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~  155 (316)
T d1fota_          78 QIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP  155 (316)
T ss_dssp             EEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred             eeeeEeeecCCcccccccccc--ccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEec
Confidence            999999999999999888875  678999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ..                                                                         ..+.+
T Consensus       156 ~~-------------------------------------------------------------------------~~~~~  162 (316)
T d1fota_         156 DV-------------------------------------------------------------------------TYTLC  162 (316)
T ss_dssp             SC-------------------------------------------------------------------------BCCCC
T ss_pred             cc-------------------------------------------------------------------------ccccc
Confidence            21                                                                         11347


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.+++.....+|.  .++++++++|.+||..||
T Consensus       163 Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~dp  240 (316)
T d1fota_         163 GTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP--FFNEDVKDLLSRLITRDL  240 (316)
T ss_dssp             SCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHTCSCT
T ss_pred             CcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhhhCH
Confidence            999999999999999999999999999999999999999999888888888888776664  489999999999999999


Q ss_pred             CCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCC
Q 012762          400 TRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVT  439 (457)
Q Consensus       400 ~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~  439 (457)
                      .+|++.. ..+++||+||||++++|..+  +...|||+|....
T Consensus       241 ~~R~~~~r~t~~~il~Hp~f~~i~~~~l~~~~~~~p~~p~~~~  283 (316)
T d1fota_         241 SQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQ  283 (316)
T ss_dssp             TTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSCCCCC--
T ss_pred             HhccccchhhHHHHHcCcccccCCHHHHHhCCCCcCCCCCcCC
Confidence            9997321 13999999999999999977  4667889886543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-63  Score=487.98  Aligned_cols=287  Identities=35%  Similarity=0.635  Sum_probs=252.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      ....+++|+++++||+|+||+||+|+++    .+|+.||||++.+...........+.+|+++|+.++|||||++++++.
T Consensus        36 ~~~~ld~y~i~~~lG~G~fg~Vy~a~~~----~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~  111 (350)
T d1rdqe_          36 NTAQLDQFDRIKTLGTGSFGRVMLVKHK----ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFK  111 (350)
T ss_dssp             CCCCGGGEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred             CCCCccCeEEEEEeecCcCcEEEEEEEC----CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccc
Confidence            3455789999999999999999999987    488999999998877666666778899999999999999999999999


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      ..+.+|+||||+.||+|..++...  +.+++..++.++.||+.||.|||++|||||||||+||||+.+|.+||+|||+++
T Consensus       112 ~~~~~~~v~e~~~~g~l~~~l~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~  189 (350)
T d1rdqe_         112 DNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cccccccccccccccchhhhHhhc--CCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeee
Confidence            999999999999999999888775  679999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                         ..
T Consensus       190 ~~~~~-------------------------------------------------------------------------~~  196 (350)
T d1rdqe_         190 RVKGR-------------------------------------------------------------------------TW  196 (350)
T ss_dssp             ECSSC-------------------------------------------------------------------------BC
T ss_pred             ecccc-------------------------------------------------------------------------cc
Confidence            54321                                                                         11


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      +++||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+....+.++......++.  .+++++.+||.+||.
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~  274 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS--HFSSDLKDLLRNLLQ  274 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TCCHHHHHHHHHHSC
T ss_pred             cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCc--cCCHHHHHHHHHHhh
Confidence            346999999999999999999999999999999999999999998888888888888776664  499999999999999


Q ss_pred             hCCCCCCC-CCcChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccccc
Q 012762          397 KDPTRRMG-SKMGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDLT  444 (457)
Q Consensus       397 ~dP~~Rps-~~~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~  444 (457)
                      .||.+|+. .+..+++|++||||++++|..+  +...|||+|......|.+
T Consensus       275 ~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p~~~~~~d~s  325 (350)
T d1rdqe_         275 VDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTS  325 (350)
T ss_dssp             SCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTCCT
T ss_pred             hCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCcCccCCCCCcchhh
Confidence            99999951 1223999999999999999876  346789999876555433

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-63  Score=471.58  Aligned_cols=257  Identities=32%  Similarity=0.540  Sum_probs=233.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|++++.||+|+||+||+|+++    .+++.||+|++.+...........+.+|+++|++++|||||++++++.+++
T Consensus         4 ~l~dy~i~~~iG~G~fg~Vy~~~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~   79 (263)
T d2j4za1           4 ALEDFEIGRPLGKGKFGNVYLAREK----QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDAT   79 (263)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             chhHeEEEEEEecCCCcEEEEEEEC----CCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECC
Confidence            4679999999999999999999987    478999999999877766667788899999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|||||||+||+|..++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||+++...
T Consensus        80 ~~~ivmEy~~~g~L~~~l~~~--~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~  157 (263)
T d2j4za1          80 RVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP  157 (263)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCC
T ss_pred             EEEEEEeecCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecC
Confidence            999999999999999988775  679999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ...                                                                        ....+
T Consensus       158 ~~~------------------------------------------------------------------------~~~~~  165 (263)
T d2j4za1         158 SSR------------------------------------------------------------------------RTTLC  165 (263)
T ss_dssp             CCC------------------------------------------------------------------------CEETT
T ss_pred             CCc------------------------------------------------------------------------ccccC
Confidence            211                                                                        11346


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+..+....+.+|.  .+++++++||.+||+.||
T Consensus       166 Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~--~~s~~~~~li~~~L~~dp  243 (263)
T d2j4za1         166 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPD--FVTEGARDLISRLLKHNP  243 (263)
T ss_dssp             EEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCT--TSCHHHHHHHHHHTCSSG
T ss_pred             CCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHccCCH
Confidence            999999999999999999999999999999999999999998888888888887776665  489999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++|||    ++|+|+||||+.
T Consensus       244 ~~R~t----~~eil~hp~~~~  260 (263)
T d2j4za1         244 SQRPM----LREVLEHPWITA  260 (263)
T ss_dssp             GGSCC----HHHHHTCHHHHH
T ss_pred             hHCcC----HHHHHcCcCcCC
Confidence            99999    999999999963

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-62  Score=475.23  Aligned_cols=281  Identities=33%  Similarity=0.692  Sum_probs=238.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH-HcCCCCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILE-MLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~-~l~H~nIv~l~~~~~~~~  159 (457)
                      +++|+++++||+|+||+||+|+++    .+|+.||||++++...........+..|+.++. .++|||||++++++.+++
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~----~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~   76 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFK----KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE   76 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             CCCeEEeeEEecCCCcEEEEEEEC----CCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCC
Confidence            478999999999999999999987    489999999998876655566666777887765 689999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+|||||||+||+|..++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.+|.+||+|||+++...
T Consensus        77 ~~yivmEy~~~g~L~~~i~~~--~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~  154 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM  154 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             ceeEEEeecCCCcHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcc
Confidence            999999999999999998775  679999999999999999999999999999999999999999999999999986543


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ....                                                                      .....+
T Consensus       155 ~~~~----------------------------------------------------------------------~~~~~~  164 (320)
T d1xjda_         155 LGDA----------------------------------------------------------------------KTNTFC  164 (320)
T ss_dssp             CTTC----------------------------------------------------------------------CBCCCC
T ss_pred             cccc----------------------------------------------------------------------cccccC
Confidence            2111                                                                      111346


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      ||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..+.+.++......+|.  .+++++++||++||..||
T Consensus       165 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~--~~s~~~~dli~~~L~~dP  242 (320)
T d1xjda_         165 GTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPR--WLEKEAKDLLVKLFVREP  242 (320)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT--TSCHHHHHHHHHHSCSSG
T ss_pred             CCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999999999999999888888888877766654  489999999999999999


Q ss_pred             CCCCCCCcChH-HHhcCCCCCCCCchhh--hccCCCCCCCCCCcccc
Q 012762          400 TRRMGSKMGAT-AIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRDL  443 (457)
Q Consensus       400 ~~Rps~~~~~~-~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~  443 (457)
                      ++||+    +. +|++||||++++|..+  +...||++|+.....|.
T Consensus       243 ~~R~s----~~~~l~~hpff~~~~~~~l~~~~~~pp~~p~~~~~~d~  285 (320)
T d1xjda_         243 EKRLG----VRGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDC  285 (320)
T ss_dssp             GGSBT----TBSCGGGSGGGTTCCHHHHHTTCSCC------------
T ss_pred             CCCcC----HHHHHHhCchhccCCHHHHHhcCCCCCCCCCCCCccch
Confidence            99999    74 8999999999999876  45678888877654443

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-61  Score=464.60  Aligned_cols=255  Identities=24%  Similarity=0.375  Sum_probs=224.0

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      ++|+++++||+|+||+||+|+++    .+|+.||||++.+...   ...+.+.+|+++|++++|||||++++++.+++.+
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~----~~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   92 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDV----ATGQEVAIRQMNLQQQ---PKKELIINEILVMRENKNPNIVNYLDSYLVGDEL   92 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBT----TTCCEEEEEEEEGGGC---SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             cccEEEEEEecCcCcEEEEEEEC----CCCCEEEEEEEecccC---hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEE
Confidence            57999999999999999999976    4789999999986543   3456788999999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||+||+|..++..   +.+++..++.++.||+.||.|||++|||||||||+|||++.+|.+||+|||+++.....
T Consensus        93 ~ivmEy~~gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1          93 WVVMEYLAGGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             EEEEECCTTCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             EEEEEecCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccc
Confidence            999999999999998876   56999999999999999999999999999999999999999999999999998755321


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      ..                                                                      .....+||
T Consensus       170 ~~----------------------------------------------------------------------~~~~~~gt  179 (293)
T d1yhwa1         170 QS----------------------------------------------------------------------KRSTMVGT  179 (293)
T ss_dssp             TC----------------------------------------------------------------------CBCCCCSC
T ss_pred             cc----------------------------------------------------------------------cccccccC
Confidence            11                                                                      11234799


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-cCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-LEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +.|||||++.+..|+.++|||||||++|+|++|+.||.+......+..+.... ..++.+..+++++++||.+||..||+
T Consensus       180 ~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  259 (293)
T d1yhwa1         180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVE  259 (293)
T ss_dssp             GGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTT
T ss_pred             CCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChh
Confidence            99999999999999999999999999999999999999887776666665543 33444456899999999999999999


Q ss_pred             CCCCCCcChHHHhcCCCCCC
Q 012762          401 RRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       401 ~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +|||    ++|+|+||||+.
T Consensus       260 ~R~s----~~eil~Hp~~~~  275 (293)
T d1yhwa1         260 KRGS----AKELLQHQFLKI  275 (293)
T ss_dssp             TSCC----HHHHTTCGGGGG
T ss_pred             HCcC----HHHHhcCHhhCC
Confidence            9999    999999999974

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-62  Score=463.15  Aligned_cols=260  Identities=23%  Similarity=0.396  Sum_probs=218.0

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++.+...  ....+.+.+|+++|++++|||||++++++.+++.
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~~--~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~   77 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNR----VTEEAVAVKIVDMKRA--VDCPENIKKEICINKMLNHENVVKFYGHRREGNI   77 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECC---------CHHHHHHHHHTCCCTTBCCEEEEEEETTE
T ss_pred             CcceEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEehhhc--chHHHHHHHHHHHHHhCCCCCEeeEeeeeccCce
Confidence            468999999999999999999987    4789999999976532  2234568889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|||||||+||+|.+++...  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....
T Consensus        78 ~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~  155 (271)
T d1nvra_          78 QYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRY  155 (271)
T ss_dssp             EEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             eEEEEeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeecc
Confidence            99999999999999888653  6799999999999999999999999999999999999999999999999999875532


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                    ....+.+|
T Consensus       156 ~~~~--------------------------------------------------------------------~~~~~~~G  167 (271)
T d1nvra_         156 NNRE--------------------------------------------------------------------RLLNKMCG  167 (271)
T ss_dssp             TTEE--------------------------------------------------------------------CCBCCCCS
T ss_pred             CCcc--------------------------------------------------------------------ccccceee
Confidence            1110                                                                    01124579


Q ss_pred             CCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          321 THEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       321 t~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      |+.|||||++.+..+ +.++|||||||++|||++|+.||....... .+..+.......+....+++++.+||.+||+.|
T Consensus       168 T~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  247 (271)
T d1nvra_         168 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVEN  247 (271)
T ss_dssp             CGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSS
T ss_pred             CcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCC
Confidence            999999999998876 678999999999999999999998765443 333333333334444568999999999999999


Q ss_pred             CCCCCCCCcChHHHhcCCCCCC
Q 012762          399 PTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      |++|||    ++|+|+||||+.
T Consensus       248 P~~R~t----~~eil~hpwf~~  265 (271)
T d1nvra_         248 PSARIT----IPDIKKDRWYNK  265 (271)
T ss_dssp             TTTSCC----HHHHTTCTTTTC
T ss_pred             hhHCcC----HHHHhcCHhhCc
Confidence            999999    999999999974

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-61  Score=475.53  Aligned_cols=283  Identities=29%  Similarity=0.554  Sum_probs=233.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHH---HHHHHHcCCCCCceEEEEE
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIE---REILEMLDHPFLPTLYATL  155 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E---~~il~~l~H~nIv~l~~~~  155 (457)
                      +.+++|++++.||+|+||+||+|+++    .+|+.||||++.+...........+.+|   +++++.++|||||++++++
T Consensus         1 lslddy~i~~~lG~G~fg~Vy~~~~~----~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~   76 (364)
T d1omwa3           1 LTMNDFSVHRIIGRGGFGEVYGCRKA----DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAF   76 (364)
T ss_dssp             CCSTTEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEE
T ss_pred             CCHHhCeeeeEEecCCCeEEEEEEEC----CCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence            35789999999999999999999987    4789999999988766555555555555   4555666899999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+.+.+|||||||+||+|..++...  ..+++..++.++.||+.||+|||++|||||||||+||||+.+|.+||+|||++
T Consensus        77 ~~~~~~~ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla  154 (364)
T d1omwa3          77 HTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLA  154 (364)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTC
T ss_pred             EECCEEEEEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeecee
Confidence            9999999999999999999998775  67899999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +......                                                                        .
T Consensus       155 ~~~~~~~------------------------------------------------------------------------~  162 (364)
T d1omwa3         155 CDFSKKK------------------------------------------------------------------------P  162 (364)
T ss_dssp             EECSSSC------------------------------------------------------------------------C
T ss_pred             eecCCCc------------------------------------------------------------------------c
Confidence            6543211                                                                        1


Q ss_pred             ccccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHH-hcccCCCCCCCCChHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVV-ARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ...+||+.|||||++.+ ..|+.++|||||||++|||++|+.||.+........... ........+..+++++++||.+
T Consensus       163 ~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  242 (364)
T d1omwa3         163 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEG  242 (364)
T ss_dssp             CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHH
T ss_pred             cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH
Confidence            13469999999999974 568999999999999999999999998755432222111 1122223334689999999999


Q ss_pred             HhhhCCCCCCCCC-cChHHHhcCCCCCCCCchhh--hccCCCCCCCCCC
Q 012762          394 LLVKDPTRRMGSK-MGATAIKRHQFFNGVNWALL--RCAKPPFIPRPVT  439 (457)
Q Consensus       394 ~L~~dP~~Rps~~-~~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~  439 (457)
                      ||+.||++||+.. ..++||++||||++++|..+  +...||++|....
T Consensus       243 ~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~  291 (364)
T d1omwa3         243 LLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGE  291 (364)
T ss_dssp             HTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC-
T ss_pred             HcccCHHHhCCCcccCHHHHHcCccccCCCHHHHhcCCCCcCcCCCCCC
Confidence            9999999999952 35799999999999999866  4567889886543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-60  Score=458.65  Aligned_cols=264  Identities=30%  Similarity=0.433  Sum_probs=228.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh---hHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR---NKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~---~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ++|+++++||+|+||+||+|+++    .+|+.||||++++......   ...+.+.+|+++|++++|||||++++++.++
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~----~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~   85 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREK----STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK   85 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             cCEEEeEEEecCCCeEEEEEEEC----CCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            56999999999999999999987    4889999999987544322   2357788999999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC----CEEEeccCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG----HIMLTDFDL  234 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~----~vkl~DFG~  234 (457)
                      +.+|||||||+||+|.+++...  +.+++..++.++.||+.||.|||++|||||||||+|||++.++    .+||+|||+
T Consensus        86 ~~~~iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~  163 (293)
T d1jksa_          86 TDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL  163 (293)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             CEEEEEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhh
Confidence            9999999999999999998775  6799999999999999999999999999999999999998776    599999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      +.......                                                                       .
T Consensus       164 a~~~~~~~-----------------------------------------------------------------------~  172 (293)
T d1jksa_         164 AHKIDFGN-----------------------------------------------------------------------E  172 (293)
T ss_dssp             CEECTTSC-----------------------------------------------------------------------B
T ss_pred             hhhcCCCc-----------------------------------------------------------------------c
Confidence            86543211                                                                       1


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIA  392 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~  392 (457)
                      ..+..||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..+.+.++......++.  ...++.++++||.
T Consensus       173 ~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  252 (293)
T d1jksa_         173 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIR  252 (293)
T ss_dssp             CSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHH
T ss_pred             ccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHH
Confidence            11346999999999999999999999999999999999999999998888888888887766553  2468899999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhh
Q 012762          393 QLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALL  426 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~  426 (457)
                      +||..||++|||    ++|+|+||||+..+|...
T Consensus       253 ~~L~~dP~~R~s----~~eil~hp~~~~~~~~~~  282 (293)
T d1jksa_         253 RLLVKDPKKRMT----IQDSLQHPWIKPKDTQQA  282 (293)
T ss_dssp             TTSCSSGGGSCC----HHHHHHSTTTCC------
T ss_pred             HHccCChhHCcC----HHHHhcCcccCCCChhHh
Confidence            999999999999    999999999999999654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-60  Score=461.08  Aligned_cols=257  Identities=28%  Similarity=0.463  Sum_probs=213.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .+.|++++.||+|+||+||+|+++    .+|+.||||++.+....  .....+.+|+++|++++|||||++++++.+++.
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~--~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~   81 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDK----RTQKLVAIKCIAKKALE--GKEGSMENEIAVLHKIKHPNIVALDDIYESGGH   81 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEET----TTCCEEEEEEEEC------------CHHHHHHHTCCCTTBCCEEEEEECSSE
T ss_pred             ccceEEEEEEeeccCeEEEEEEEC----CCCCEEEEEEEchHHhh--hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            356999999999999999999987    47889999999876432  234567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc---cCCCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR---SDGHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~---~~~~vkl~DFG~s~~  237 (457)
                      +|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++|||||||||+|||+.   .++.+||+|||+++.
T Consensus        82 ~~lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~  159 (307)
T d1a06a_          82 LYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM  159 (307)
T ss_dssp             EEEEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-----
T ss_pred             EEEEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEE
Confidence            99999999999999998764  6799999999999999999999999999999999999995   478999999999865


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .....                                                                       ...+
T Consensus       160 ~~~~~-----------------------------------------------------------------------~~~~  168 (307)
T d1a06a_         160 EDPGS-----------------------------------------------------------------------VLST  168 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCC-----------------------------------------------------------------------eeee
Confidence            43211                                                                       1123


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L  395 (457)
                      .+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.........+......++.  ...+++++++||.+||
T Consensus       169 ~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  248 (307)
T d1a06a_         169 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLM  248 (307)
T ss_dssp             ----CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHS
T ss_pred             eeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHc
Confidence            57999999999999999999999999999999999999999998888888888887766543  3568999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.||++|||    ++|+|+||||++
T Consensus       249 ~~dP~~R~s----~~eil~hp~~~~  269 (307)
T d1a06a_         249 EKDPEKRFT----CEQALQHPWIAG  269 (307)
T ss_dssp             CSSGGGSCC----HHHHHHSTTTTS
T ss_pred             cCCHhHCcC----HHHHhcCHhhCC
Confidence            999999999    999999999986

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=6e-60  Score=466.06  Aligned_cols=262  Identities=27%  Similarity=0.432  Sum_probs=231.3

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+++|++++.||+|+||+||+|+++    .+|+.||||++.+...   ...+.+.+|+++|++|+|||||++++++.+++
T Consensus        24 il~~Y~i~~~lG~G~fg~Vy~~~~~----~~g~~vAvK~i~~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~   96 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFGVVHRVTER----ATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN   96 (350)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEET----TTTEEEEEEEECCCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEEETT
T ss_pred             CccCeEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEcccch---hhHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence            3578999999999999999999987    4899999999976532   34567888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc--CCCEEEeccCCCcC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS--DGHIMLTDFDLSLK  237 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~--~~~vkl~DFG~s~~  237 (457)
                      .+|||||||+||+|.+++... .+.+++..++.++.||+.||.|||++|||||||||+|||++.  ++.+||+|||+++.
T Consensus        97 ~~~ivmE~~~gg~L~~~l~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~  175 (350)
T d1koaa2          97 EMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH  175 (350)
T ss_dssp             EEEEEECCCCSCBHHHHHTCT-TSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchhee
Confidence            999999999999999888543 357999999999999999999999999999999999999964  57899999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ......                                                                       ..+
T Consensus       176 ~~~~~~-----------------------------------------------------------------------~~~  184 (350)
T d1koaa2         176 LDPKQS-----------------------------------------------------------------------VKV  184 (350)
T ss_dssp             CCTTSC-----------------------------------------------------------------------EEE
T ss_pred             cccccc-----------------------------------------------------------------------cce
Confidence            542211                                                                       123


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L  395 (457)
                      .+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+..+....+.++..  ..+++++++||.+||
T Consensus       185 ~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L  264 (350)
T d1koaa2         185 TTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLL  264 (350)
T ss_dssp             ECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHC
T ss_pred             ecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHc
Confidence            579999999999999999999999999999999999999999988888888888877666543  458899999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                      +.||++|||    ++|||+||||+..+|.
T Consensus       265 ~~dP~~R~t----~~eil~hp~~~~~~~~  289 (350)
T d1koaa2         265 LADPNTRMT----IHQALEHPWLTPGNAP  289 (350)
T ss_dssp             CSSGGGSCC----HHHHHHSTTTSCTTCC
T ss_pred             cCChhHCcC----HHHHhcCcccCCCCCC
Confidence            999999999    9999999999987764

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-61  Score=469.65  Aligned_cols=262  Identities=24%  Similarity=0.366  Sum_probs=218.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..++|+++++||+|+||+||+|+++    .+|+.||+|++++..  .......+.+|+++|+.++|||||+++++|.++
T Consensus         3 l~~d~y~~~~~iG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~   76 (322)
T d1s9ja_           3 LKDDDFEKISELGAGNGGVVFKVSHK----PSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD   76 (322)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEET----TTTEEEEEEEEECCC--CTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS
T ss_pred             CCccCCEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEChhh--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC
Confidence            45578999999999999999999986    488999999997642  234456788999999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      +.+|||||||+||+|..++...  +.+++..++.++.||+.||.|||+ +||+||||||+||||+.+|.+||+|||+|+.
T Consensus        77 ~~~~iVmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          77 GEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             SEEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHH
T ss_pred             CEEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccc
Confidence            9999999999999999998775  679999999999999999999997 5999999999999999999999999999864


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ..+                                                                        ....+
T Consensus       155 ~~~------------------------------------------------------------------------~~~~~  162 (322)
T d1s9ja_         155 LID------------------------------------------------------------------------SMANS  162 (322)
T ss_dssp             HHH------------------------------------------------------------------------HTC--
T ss_pred             cCC------------------------------------------------------------------------Ccccc
Confidence            321                                                                        01124


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHH----------------------------
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLAN----------------------------  369 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~----------------------------  369 (457)
                      ++||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+.......                            
T Consensus       163 ~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (322)
T d1s9ja_         163 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGM  242 (322)
T ss_dssp             -CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC---------------------------
T ss_pred             ccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccccc
Confidence            5799999999999999999999999999999999999999987553322111                            


Q ss_pred             --------------HHhcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          370 --------------VVARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       370 --------------~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                    +............++.++++||.+||..||++|||    ++|+|+||||+..+|.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~t----a~e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         243 DSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERAD----LKQLMVHAFIKRSDAE  307 (322)
T ss_dssp             ---CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCC----HHHHHTSHHHHHHHHS
T ss_pred             ccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcC----HHHHhhCHhhCcCCcc
Confidence                          00000000011235778999999999999999999    9999999999876664

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-60  Score=457.30  Aligned_cols=257  Identities=28%  Similarity=0.434  Sum_probs=222.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      +.|+++++||+|+||+||+|+++    .+|+.||||++.+..   ....+.+.+|+++|++++|||||++++++.+++.+
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~---~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~   84 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNK----ETSVLAAAKVIDTKS---EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNL   84 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECSS---SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEEC----CCCeEEEEEEECcCC---HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeE
Confidence            46899999999999999999987    478999999997642   23445678899999999999999999999999999


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||+||+|..++... .+.+++..++.++.||+.||.|||++|||||||||+||||+.+|.+||+|||+++.....
T Consensus        85 ~lvmEy~~~g~L~~~~~~~-~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          85 WILIEFCAGGAVDAVMLEL-ERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             EEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             EEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCC
Confidence            9999999999999887653 256999999999999999999999999999999999999999999999999998543211


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .                                                                      ....+.+||
T Consensus       164 ~----------------------------------------------------------------------~~~~~~~Gt  173 (288)
T d2jfla1         164 I----------------------------------------------------------------------QRRDSFIGT  173 (288)
T ss_dssp             H----------------------------------------------------------------------HHHTCCCSC
T ss_pred             c----------------------------------------------------------------------ccccccccc
Confidence            0                                                                      011235799


Q ss_pred             CCccCchhhc-----CCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-CCCCCCCChHHHHHHHHHh
Q 012762          322 HEYLAPEIIS-----GEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-FPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       322 ~~y~aPE~l~-----~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~L  395 (457)
                      +.|||||++.     +..|+.++|||||||++|||++|+.||.+....+.+.++...... ++....+++++++||.+||
T Consensus       174 ~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L  253 (288)
T d2jfla1         174 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCL  253 (288)
T ss_dssp             CTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHS
T ss_pred             cccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHc
Confidence            9999999984     445899999999999999999999999998888888887776543 2334568999999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +.||++|||    ++|||+||||+.
T Consensus       254 ~~dp~~R~t----~~ell~hp~~~~  274 (288)
T d2jfla1         254 EKNVDARWT----TSQLLQHPFVTV  274 (288)
T ss_dssp             CSSTTTSCC----HHHHTTSGGGCC
T ss_pred             cCChhHCcC----HHHHhcCcccCC
Confidence            999999999    999999999985

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-60  Score=452.19  Aligned_cols=258  Identities=22%  Similarity=0.360  Sum_probs=214.5

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--C
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--P  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--~  158 (457)
                      .++|++++.||+|+||+||+|+++    .+|+.||||++.+.... +.....+.+|+++|++++|||||++++++.+  +
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   77 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRK----SDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTN   77 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET----TTCCEEEEEEECCTTSC-HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC---
T ss_pred             chhCEEeEEEecCCCeEEEEEEEC----CCCCEEEEEEEChhhCC-HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCC
Confidence            468999999999999999999987    47899999999876543 3445678889999999999999999999864  4


Q ss_pred             CcEEEEEeecCCCChHHHHHhC--CCCCCCHHHHHHHHHHHHHHHHHHHHcC-----ceeecCCCCCeEEccCCCEEEec
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQ--PDKRFHESAVRFYASEVVVALEFLHMMG-----IIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~--~~~~~~~~~~~~i~~qi~~~L~yLH~~~-----iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                      +.+|||||||+||+|.+++...  ....+++..++.++.||+.||.|||++|     ||||||||+||||+.+|.+||+|
T Consensus        78 ~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~D  157 (269)
T d2java1          78 TTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGD  157 (269)
T ss_dssp             -CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECC
T ss_pred             CEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEee
Confidence            5789999999999999988642  2467999999999999999999999976     99999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++.......                                                                    
T Consensus       158 FG~a~~~~~~~~--------------------------------------------------------------------  169 (269)
T d2java1         158 FGLARILNHDTS--------------------------------------------------------------------  169 (269)
T ss_dssp             HHHHHHC-------------------------------------------------------------------------
T ss_pred             ccceeecccCCC--------------------------------------------------------------------
Confidence            999876532111                                                                    


Q ss_pred             ccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHH
Q 012762          312 DVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLI  391 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  391 (457)
                        ...+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+...++...... +.+..+++++.+||
T Consensus       170 --~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~-~~~~~~s~~l~~li  246 (269)
T d2java1         170 --FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFR-RIPYRYSDELNEII  246 (269)
T ss_dssp             --------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC-CCCTTSCHHHHHHH
T ss_pred             --ccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCC-CCCcccCHHHHHHH
Confidence              111347999999999999999999999999999999999999999998888888877776554 23346899999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCC
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFF  418 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f  418 (457)
                      .+||+.||.+|||    ++||++|||.
T Consensus       247 ~~~L~~dp~~Rps----~~ell~hp~i  269 (269)
T d2java1         247 TRMLNLKDYHRPS----VEEILENPLI  269 (269)
T ss_dssp             HHHTCSSGGGSCC----HHHHHTSTTC
T ss_pred             HHHcCCChhHCcC----HHHHHhCCcC
Confidence            9999999999999    9999999995

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.9e-60  Score=458.48  Aligned_cols=254  Identities=24%  Similarity=0.320  Sum_probs=226.2

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEE
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWSC  162 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~  162 (457)
                      .|+++++||+|+||+||+|+++    .+|+.||||++.+.........+.+.+|+++|++|+|||||++++++.+++.+|
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~   91 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDV----RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAW   91 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEEC----CCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEE
Confidence            4999999999999999999987    478999999998765555556677889999999999999999999999999999


Q ss_pred             EEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCC
Q 012762          163 LLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNST  242 (457)
Q Consensus       163 lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~  242 (457)
                      ||||||.+|+|..++...  ..+++..++.++.||+.||.|||++|||||||||+||||+.+|.+||+|||+++....  
T Consensus        92 iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~--  167 (309)
T d1u5ra_          92 LVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP--  167 (309)
T ss_dssp             EEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS--
T ss_pred             EEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC--
Confidence            999999999997666654  6799999999999999999999999999999999999999999999999999864321  


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCC
Q 012762          243 STAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTH  322 (457)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  322 (457)
                                                                                              ....+||+
T Consensus       168 ------------------------------------------------------------------------~~~~~GT~  175 (309)
T d1u5ra_         168 ------------------------------------------------------------------------ANSFVGTP  175 (309)
T ss_dssp             ------------------------------------------------------------------------BCCCCSCG
T ss_pred             ------------------------------------------------------------------------CCccccCc
Confidence                                                                                    01246999


Q ss_pred             CccCchhhcC---CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCC
Q 012762          323 EYLAPEIISG---EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDP  399 (457)
Q Consensus       323 ~y~aPE~l~~---~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP  399 (457)
                      .|||||++.+   ..|+.++|||||||++|||++|..||.+......+.++............+++++++||.+||+.||
T Consensus       176 ~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP  255 (309)
T d1u5ra_         176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIP  255 (309)
T ss_dssp             GGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSG
T ss_pred             cccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCCh
Confidence            9999999975   3589999999999999999999999999888888888887776666666789999999999999999


Q ss_pred             CCCCCCCcChHHHhcCCCCCC
Q 012762          400 TRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       400 ~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++|||    ++|||+||||..
T Consensus       256 ~~Rpt----~~ell~Hp~~~~  272 (309)
T d1u5ra_         256 QDRPT----SEVLLKHRFVLR  272 (309)
T ss_dssp             GGSCC----HHHHTTCHHHHS
T ss_pred             hHCcC----HHHHHhCHHhcC
Confidence            99999    999999999964

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-59  Score=444.67  Aligned_cols=252  Identities=23%  Similarity=0.395  Sum_probs=212.4

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc----CC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC----PR  159 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~----~~  159 (457)
                      |++.++||+|+||+||+|+++    .+++.||+|++..... .......+.+|+++|++++|||||++++++..    ..
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~----~~~~~va~K~i~~~~~-~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~   85 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDT----ETTVEVAWCELQDRKL-TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKK   85 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEET----TTCCEEEEEEEEGGGS-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCE
T ss_pred             EEeeeEEecCcCcEEEEEEEC----CCCeEEEEEEEchhhC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCC
Confidence            578889999999999999987    4788999999987654 33445678899999999999999999999864    34


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--ceeecCCCCCeEEc-cCCCEEEeccCCCc
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMG--IIYRDLKPENVLVR-SDGHIMLTDFDLSL  236 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~--iiHrDIKp~NIll~-~~~~vkl~DFG~s~  236 (457)
                      .+|||||||++|+|.+++...  ..+++..++.++.||+.||+|||+++  ||||||||+||||+ .++.+||+|||+++
T Consensus        86 ~~~ivmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~  163 (270)
T d1t4ha_          86 CIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  163 (270)
T ss_dssp             EEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEEEEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence            689999999999999998775  67999999999999999999999998  99999999999997 47899999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .....                                                                        ...
T Consensus       164 ~~~~~------------------------------------------------------------------------~~~  171 (270)
T d1t4ha_         164 LKRAS------------------------------------------------------------------------FAK  171 (270)
T ss_dssp             GCCTT------------------------------------------------------------------------SBE
T ss_pred             eccCC------------------------------------------------------------------------ccC
Confidence            43211                                                                        112


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHH-HHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLA-NVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      +.+||+.|||||++.+ .|+.++|||||||++|||++|+.||.+......+. .+..+.........+++++++||.+||
T Consensus       172 ~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l  250 (270)
T d1t4ha_         172 AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCI  250 (270)
T ss_dssp             ESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHS
T ss_pred             CcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHc
Confidence            4579999999999976 59999999999999999999999998766554444 443332222233457889999999999


Q ss_pred             hhCCCCCCCCCcChHHHhcCCCCC
Q 012762          396 VKDPTRRMGSKMGATAIKRHQFFN  419 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll~hp~f~  419 (457)
                      +.||++|||    ++|||+||||+
T Consensus       251 ~~dp~~R~s----~~ell~Hp~fk  270 (270)
T d1t4ha_         251 RQNKDERYS----IKDLLNHAFFQ  270 (270)
T ss_dssp             CSSGGGSCC----HHHHHTSGGGC
T ss_pred             cCCHhHCcC----HHHHhCCcccC
Confidence            999999999    99999999996

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.5e-59  Score=460.89  Aligned_cols=258  Identities=29%  Similarity=0.428  Sum_probs=227.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++++...   .....+.+|+++|++|+|||||+++++|.+++.
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~----~~~~~vAiK~i~~~~~---~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~  100 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEK----ATGRVFVAKFINTPYP---LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYE  100 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSE
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEECCcch---hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCE
Confidence            467999999999999999999987    4789999999976532   234567889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEc--cCCCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVR--SDGHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~--~~~~vkl~DFG~s~~~  238 (457)
                      +|||||||+||+|.+++... ...+++..++.++.||+.||.|||++|||||||||+||||+  .++.+||+|||+++..
T Consensus       101 ~~ivmE~~~gg~L~~~~~~~-~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         101 MVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             EEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCChHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceec
Confidence            99999999999998766543 35699999999999999999999999999999999999998  5689999999998765


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      .....                                                                       ..+.
T Consensus       180 ~~~~~-----------------------------------------------------------------------~~~~  188 (352)
T d1koba_         180 NPDEI-----------------------------------------------------------------------VKVT  188 (352)
T ss_dssp             CTTSC-----------------------------------------------------------------------EEEE
T ss_pred             CCCCc-----------------------------------------------------------------------eeec
Confidence            42211                                                                       1234


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+....+..+....+.++.  ...+++++++||.+||+
T Consensus       189 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  268 (352)
T d1koba_         189 TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQ  268 (352)
T ss_dssp             CSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSC
T ss_pred             cCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcc
Confidence            6999999999999999999999999999999999999999999888888888888776654  35689999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                      .||.+|||    ++|+|+||||++.
T Consensus       269 ~dp~~R~s----~~eil~Hp~~~~~  289 (352)
T d1koba_         269 KEPRKRLT----VHDALEHPWLKGD  289 (352)
T ss_dssp             SSGGGSCC----HHHHHTSTTTSSC
T ss_pred             CChhHCcC----HHHHhcCHhhCCC
Confidence            99999999    9999999999874

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=9.5e-58  Score=436.27  Aligned_cols=259  Identities=28%  Similarity=0.409  Sum_probs=226.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh------hhHHHHHHHHHHHHHHcC-CCCCceEEE
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS------RNKESRARIEREILEMLD-HPFLPTLYA  153 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~------~~~~~~~~~E~~il~~l~-H~nIv~l~~  153 (457)
                      .++|++++.||+|+||+||+|+++    .+|+.||||++.+.....      ....+.+.+|+++|++|+ ||||+++++
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~----~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~   77 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHK----PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKD   77 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             cccCEEceEEecCcCeEEEEEEEC----CCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            368999999999999999999876    478999999997754322      223456788999999996 999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++.+++++|||||||+||+|.+++...  +.+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus        78 ~~~~~~~~~ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG  155 (277)
T d1phka_          78 TYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFG  155 (277)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             ecccCcceEEEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccch
Confidence            999999999999999999999999775  679999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++......                                                                       
T Consensus       156 ~a~~~~~~~-----------------------------------------------------------------------  164 (277)
T d1phka_         156 FSCQLDPGE-----------------------------------------------------------------------  164 (277)
T ss_dssp             TCEECCTTC-----------------------------------------------------------------------
T ss_pred             heeEccCCC-----------------------------------------------------------------------
Confidence            986543211                                                                       


Q ss_pred             ccccccCCCCccCchhhcC------CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--CCCCCh
Q 012762          314 RSMSFVGTHEYLAPEIISG------EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--EPSVPG  385 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~------~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~  385 (457)
                      .....+||+.|+|||++.+      ..++.++||||+||++|||++|+.||.+.+.......++.+...++.  ...+++
T Consensus       165 ~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  244 (277)
T d1phka_         165 KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSD  244 (277)
T ss_dssp             CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCH
T ss_pred             ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCH
Confidence            1113469999999999963      34688999999999999999999999999888888888887665543  346899


Q ss_pred             HHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          386 PAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       386 ~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      ++++||.+||+.||++||+    ++|||+||||+.
T Consensus       245 ~~~~li~~~L~~~p~~R~s----~~eil~h~~~~~  275 (277)
T d1phka_         245 TVKDLVSRFLVVQPQKRYT----AEEALAHPFFQQ  275 (277)
T ss_dssp             HHHHHHHHHCCSSGGGSCC----HHHHTTSGGGCT
T ss_pred             HHHHHHHHHccCChhHCcC----HHHHHcCHHHHH
Confidence            9999999999999999999    999999999985

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-58  Score=441.98  Aligned_cols=258  Identities=24%  Similarity=0.308  Sum_probs=210.8

Q ss_pred             eEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhh--hHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcEEE
Q 012762           86 FVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSR--NKESRARIEREILEMLDHPFLPTLYATLDCPRWSCL  163 (457)
Q Consensus        86 ~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~--~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~~l  163 (457)
                      .+++||+|+||+||+|+++    .+|+.||||+++.......  .....+.+|+++|+.++|||||++++++.+++++||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~i   77 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDK----NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISL   77 (299)
T ss_dssp             EEEEEEEETTEEEEEEECS----SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEE
T ss_pred             cceEeccCcCeEEEEEEEC----CCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceee
Confidence            4689999999999999986    4789999999976543221  123567889999999999999999999999999999


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      |||||.++++..+...  ...+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.......
T Consensus        78 vmE~~~~~~~~~~~~~--~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~  155 (299)
T d1ua2a_          78 VFDFMETDLEVIIKDN--SLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  155 (299)
T ss_dssp             EEECCSEEHHHHHTTC--CSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             hhhhhcchHHhhhhhc--ccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcc
Confidence            9999988877655443  46799999999999999999999999999999999999999999999999999865432111


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                                                                                            ...+.+||+.
T Consensus       156 ----------------------------------------------------------------------~~~~~~gt~~  165 (299)
T d1ua2a_         156 ----------------------------------------------------------------------AYTHQVVTRW  165 (299)
T ss_dssp             ----------------------------------------------------------------------CCCCSCCCCT
T ss_pred             ----------------------------------------------------------------------cccceecChh
Confidence                                                                                  1113469999


Q ss_pred             ccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC-----------------------
Q 012762          324 YLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK-----------------------  379 (457)
Q Consensus       324 y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~-----------------------  379 (457)
                      |||||++.+. .|+.++|||||||++|||++|.+||.+....+.+.++.........                       
T Consensus       166 y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (299)
T d1ua2a_         166 YRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPL  245 (299)
T ss_dssp             TCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCH
T ss_pred             hccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCCh
Confidence            9999999755 5799999999999999999999999998888777776643221110                       


Q ss_pred             ---CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCc
Q 012762          380 ---EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNW  423 (457)
Q Consensus       380 ---~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~  423 (457)
                         ...+++++++||.+||+.||++|||    ++|+|+||||++...
T Consensus       246 ~~~~~~~s~~~~dll~~~L~~dP~~R~s----a~e~L~Hp~f~~~p~  288 (299)
T d1ua2a_         246 HHIFSAAGDDLLDLIQGLFLFNPCARIT----ATQALKMKYFSNRPG  288 (299)
T ss_dssp             HHHCTTCCHHHHHHHHHHHCSSTTTSCC----HHHHHTSGGGTSSSC
T ss_pred             HHhcccCCHHHHHHHHHHccCChhhCcC----HHHHhCCHhhCCCCC
Confidence               1245788999999999999999999    999999999986443

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-57  Score=445.34  Aligned_cols=256  Identities=23%  Similarity=0.364  Sum_probs=226.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      .++|+++++||+|+||+||+|.++    .+|+.||||++++..    .....+.+|+++|++++|||||+++++|.+++.
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~----~~~~~~AiK~i~~~~----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~   75 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVET----SSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEE   75 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTE
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC----CCCcEEEEEEEcCCc----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCE
Confidence            468999999999999999999987    478999999997653    234567789999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC--CCEEEeccCCCcCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD--GHIMLTDFDLSLKG  238 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~--~~vkl~DFG~s~~~  238 (457)
                      +|||||||+||+|.+++... ...+++.+++.++.||+.||+|||++||+||||||+|||++.+  +.+||+|||+++..
T Consensus        76 ~~lvmE~~~gg~L~~~i~~~-~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~  154 (321)
T d1tkia_          76 LVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQL  154 (321)
T ss_dssp             EEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEEC
T ss_pred             EEEEEecCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcc
Confidence            99999999999999988764 2469999999999999999999999999999999999999854  48999999998654


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ....                                                                       ...+.
T Consensus       155 ~~~~-----------------------------------------------------------------------~~~~~  163 (321)
T d1tkia_         155 KPGD-----------------------------------------------------------------------NFRLL  163 (321)
T ss_dssp             CTTC-----------------------------------------------------------------------EEEEE
T ss_pred             ccCC-----------------------------------------------------------------------ccccc
Confidence            3211                                                                       11234


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCC--CCCChHHHHHHHHHhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKE--PSVPGPAKDLIAQLLV  396 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~L~  396 (457)
                      .||+.|+|||.+.+..|+.++|||||||++|+|++|..||.+.+..+.+.+++...+.++..  ..+++++++||.+||.
T Consensus       164 ~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~  243 (321)
T d1tkia_         164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLV  243 (321)
T ss_dssp             ESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSC
T ss_pred             ccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHcc
Confidence            69999999999999999999999999999999999999999999888999998887766542  4689999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcCCCCCC
Q 012762          397 KDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      .||++|||    ++|+|+||||+.
T Consensus       244 ~dp~~R~s----~~eil~hp~~~~  263 (321)
T d1tkia_         244 KERKSRMT----ASEALQHPWLKQ  263 (321)
T ss_dssp             SSGGGSCC----HHHHHHSHHHHS
T ss_pred             CChhHCcC----HHHHhcCHhhcc
Confidence            99999999    999999999974

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-57  Score=432.72  Aligned_cols=259  Identities=20%  Similarity=0.257  Sum_probs=224.6

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..|++..++|++.++||+|+||+||+|+++.    +++.||||++++..    ...+++.+|+++|++++|||||+++++
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~----~~~~vAvK~i~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~   81 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKK----YSLTVAVKTLKEDT----MEVEEFLKEAAVMKEIKHPNLVQLLGV   81 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGG----GTEEEEEEECCTTC----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECC----CCeEEEEEEECCcc----chHHHHHHHHHHHHhCCCCCEecCCcc
Confidence            4578888999999999999999999999873    78899999997543    245678899999999999999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.+++.+|||||||++|+|..++.......+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+
T Consensus        82 ~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~  161 (287)
T d1opja_          82 CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGL  161 (287)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCC
T ss_pred             EeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccc
Confidence            99999999999999999999999887778899999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.........                                                                     
T Consensus       162 a~~~~~~~~~~---------------------------------------------------------------------  172 (287)
T d1opja_         162 SRLMTGDTYTA---------------------------------------------------------------------  172 (287)
T ss_dssp             TTTCCSSSSEE---------------------------------------------------------------------
T ss_pred             eeecCCCCcee---------------------------------------------------------------------
Confidence            87654321110                                                                     


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      .....||+.|||||++.+..|+.++|||||||++|||++|..||........+..++......+.+..+++++++||.+|
T Consensus       173 ~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~c  252 (287)
T d1opja_         173 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRAC  252 (287)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             eccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHH
Confidence            11234899999999999999999999999999999999977666555555555566666667777778999999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhc
Q 012762          395 LVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~  414 (457)
                      |+.||++|||    ++||++
T Consensus       253 l~~dP~~Rps----~~ei~~  268 (287)
T d1opja_         253 WQWNPSDRPS----FAEIHQ  268 (287)
T ss_dssp             TCSSGGGSCC----HHHHHH
T ss_pred             cCCCHhHCcC----HHHHHH
Confidence            9999999999    888865

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-56  Score=433.87  Aligned_cols=261  Identities=27%  Similarity=0.372  Sum_probs=215.8

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|+++    .+|+.||||+++.... ......++.+|+++|++++|||||++++++.+++.
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~   75 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNK----LTGEVVALKKIRLDTE-TEGVPSTAIREISLLKELNHPNIVKLLDVIHTENK   75 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTE
T ss_pred             CCCCEeccEEecCcCeEEEEEEEC----CCCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEEeccccccccc
Confidence            478999999999999999999987    4788999999976532 22345678889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      +|||||||. +.+..++.......+++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+++....
T Consensus        76 ~~iv~e~~~-~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~  154 (298)
T d1gz8a_          76 LYLVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV  154 (298)
T ss_dssp             EEEEEECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred             eeEEEeecC-CchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccC
Confidence            999999995 5555566555567899999999999999999999999999999999999999999999999999864432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      .....+|
T Consensus       155 ~~~----------------------------------------------------------------------~~~~~~g  164 (298)
T d1gz8a_         155 PVR----------------------------------------------------------------------TYTHEVV  164 (298)
T ss_dssp             CSB----------------------------------------------------------------------CTTCCBC
T ss_pred             Ccc----------------------------------------------------------------------cceeecc
Confidence            111                                                                      1113469


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC--------------------
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK--------------------  379 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~--------------------  379 (457)
                      |+.|+|||++.... ++.++|||||||++|+|++|+.||.+.+....+.++.........                    
T Consensus       165 t~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (298)
T d1gz8a_         165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWA  244 (298)
T ss_dssp             CCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCC
T ss_pred             cceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccccccccccc
Confidence            99999999988776 488999999999999999999999988877766665543221110                    


Q ss_pred             -------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          380 -------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       380 -------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                             ...++.++++||.+||+.||++|||    ++|||+||||+.+
T Consensus       245 ~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t----~~ell~H~ff~~~  289 (298)
T d1gz8a_         245 RQDFSKVVPPLDEDGRSLLSQMLHYDPNKRIS----AKAALAHPFFQDV  289 (298)
T ss_dssp             CCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGTTC
T ss_pred             ccchhhhccCCCHHHHHHHHHHccCChhHCcC----HHHHhCCHhhccC
Confidence                   1245678999999999999999999    9999999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-57  Score=441.70  Aligned_cols=293  Identities=38%  Similarity=0.682  Sum_probs=239.7

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHHcCC-CCCceEEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVS-RNKESRARIEREILEMLDH-PFLPTLYATL  155 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~-~~~~~~~~~E~~il~~l~H-~nIv~l~~~~  155 (457)
                      .+.+++|+++++||+|+||+||+|++.. +..+|+.||||++++..... ....+.+.+|+++|++++| |||+++++++
T Consensus        20 ~~~l~~y~~~~~IG~G~fg~Vy~~~~~~-~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~   98 (322)
T d1vzoa_          20 KVGIENFELLKVLGTGAYGKVFLVRKIS-GHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAF   98 (322)
T ss_dssp             CCCGGGEEEEEEEEETTTEEEEEEEECS-STTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEE
T ss_pred             ccchhceEEEEEEecCCCeEEEEEEECc-cCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeee
Confidence            3567899999999999999999998753 23478999999997654322 2234567789999999976 8999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .+...+|+||||+.+|+|..++...  +.+++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+|||++
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~--~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a  176 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS  176 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred             ccCCceeeeeecccccHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccch
Confidence            9999999999999999999988775  67889999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.......                                                                     ...
T Consensus       177 ~~~~~~~~---------------------------------------------------------------------~~~  187 (322)
T d1vzoa_         177 KEFVADET---------------------------------------------------------------------ERA  187 (322)
T ss_dssp             EECCGGGG---------------------------------------------------------------------GGG
T ss_pred             hhhccccc---------------------------------------------------------------------ccc
Confidence            65532111                                                                     112


Q ss_pred             ccccCCCCccCchhhcCCC--CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhccc--CCCCCCCCChHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEG--HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARAL--EFPKEPSVPGPAKDLI  391 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~--~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll  391 (457)
                      .+..|++.|+|||.+.+..  ++.++|||||||+||||++|+.||.+.........+.....  ..+.+..+++++.+||
T Consensus       188 ~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  267 (322)
T d1vzoa_         188 YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLI  267 (322)
T ss_dssp             CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             cccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHH
Confidence            2456999999999998654  68899999999999999999999988655444444433321  2233345899999999


Q ss_pred             HHHhhhCCCCCCCCCc-ChHHHhcCCCCCCCCchhh--hccCCCCCCCCCCccc
Q 012762          392 AQLLVKDPTRRMGSKM-GATAIKRHQFFNGVNWALL--RCAKPPFIPRPVTCRD  442 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~-~~~~ll~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~  442 (457)
                      .+||..||++||+... .++|+|+||||+.++|..+  +...+||+|+.....|
T Consensus       268 ~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p~~~~~~~  321 (322)
T d1vzoa_         268 QRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELD  321 (322)
T ss_dssp             HHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-CC
T ss_pred             HHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCCCCCCCCC
Confidence            9999999999996432 4899999999999999877  4677899998877665

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-56  Score=438.45  Aligned_cols=266  Identities=20%  Similarity=0.268  Sum_probs=224.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCC-CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS-NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .|++..++|++.++||+|+||+||+|+++.... .....||+|++....  .......+.+|+++|+++ +|||||++++
T Consensus        31 kwei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~HpnIv~l~~  108 (325)
T d1rjba_          31 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA--DSSEREALMSELKMMTQLGSHENIVNLLG  108 (325)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecccc--CHHHHHHHHHHHHHHHHhcCCCcEeEEEE
Confidence            456778899999999999999999999874322 234579999986543  223445678899999998 8999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCC---------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceee
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQP---------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYR  212 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~---------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHr  212 (457)
                      ++.+.+.+|||||||++|+|.++++...                     ...+++..++.++.||+.||+|||++|||||
T Consensus       109 ~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHR  188 (325)
T d1rjba_         109 ACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHR  188 (325)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEET
T ss_pred             EEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            9999999999999999999999987642                     2358999999999999999999999999999


Q ss_pred             cCCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcch
Q 012762          213 DLKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKR  292 (457)
Q Consensus       213 DIKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      ||||+|||++.++.+||+|||+|+........                                                
T Consensus       189 DlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~------------------------------------------------  220 (325)
T d1rjba_         189 DLAARNVLVTHGKVVKICDFGLARDIMSDSNY------------------------------------------------  220 (325)
T ss_dssp             TCSGGGEEEETTTEEEECCCGGGSCGGGCTTS------------------------------------------------
T ss_pred             cCchhccccccCCeEEEeeccccccccCCCce------------------------------------------------
Confidence            99999999999999999999998654321110                                                


Q ss_pred             hccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHH
Q 012762          293 RRKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVV  371 (457)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~  371 (457)
                                          ....+..||+.|||||++.+..|+.++|||||||++|||++ |+.||.+......+.+++
T Consensus       221 --------------------~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~  280 (325)
T d1rjba_         221 --------------------VVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLI  280 (325)
T ss_dssp             --------------------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHH
T ss_pred             --------------------eeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence                                01113468999999999999999999999999999999997 899999887777778888


Q ss_pred             hcccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          372 ARALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ....+++.+..+++++++||.+||+.||++|||    ++||++|
T Consensus       281 ~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt----~~ei~~~  320 (325)
T d1rjba_         281 QNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS----FPNLTSF  320 (325)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             hcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            888887777789999999999999999999999    9999876

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-56  Score=426.59  Aligned_cols=258  Identities=21%  Similarity=0.318  Sum_probs=213.7

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .|++..++|++.++||+|+||+||+|+++       ..||||+++.... .....+.+.+|+++|++++|||||++++++
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~-------~~vAvK~~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~   73 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWH-------GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYS   73 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESS-------SEEEEEECCCSSC-CTTHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEEC-------CEEEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeeeEEE
Confidence            46788899999999999999999999753       2599999975533 334567888999999999999999999987


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      .. +.+|||||||++|+|.+++... ...+++..+..++.||+.||+|||++|||||||||+||||+.++.+||+|||++
T Consensus        74 ~~-~~~~lv~Ey~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla  151 (276)
T d1uwha_          74 TA-PQLAIVTQWCEGSSLYHHLHII-ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLA  151 (276)
T ss_dssp             CS-SSCEEEEECCCEEEHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCS
T ss_pred             ec-cEEEEEEecCCCCCHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccce
Confidence            54 5689999999999999988764 356999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +........                                                                    ...
T Consensus       152 ~~~~~~~~~--------------------------------------------------------------------~~~  163 (276)
T d1uwha_         152 TVKSRWSGS--------------------------------------------------------------------HQF  163 (276)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             eeccccCCc--------------------------------------------------------------------ccc
Confidence            655422111                                                                    011


Q ss_pred             ccccCCCCccCchhhcCC---CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC----CCCCChHHH
Q 012762          316 MSFVGTHEYLAPEIISGE---GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK----EPSVPGPAK  388 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~---~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  388 (457)
                      .+..||+.|||||++.+.   .|+.++|||||||+||||++|+.||.+......+...+......|.    ...+++++.
T Consensus       164 ~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~  243 (276)
T d1uwha_         164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMK  243 (276)
T ss_dssp             --CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHH
T ss_pred             cccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHH
Confidence            234699999999999753   4899999999999999999999999987776666666655544432    346889999


Q ss_pred             HHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          389 DLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +||.+||..||++|||    +.||+++
T Consensus       244 ~li~~cl~~dp~~RPt----~~~il~~  266 (276)
T d1uwha_         244 RLMAECLKKKRDERPL----FPQILAS  266 (276)
T ss_dssp             HHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             HHHHHHcCCCHhHCcC----HHHHHHH
Confidence            9999999999999999    9998876

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-56  Score=428.30  Aligned_cols=261  Identities=20%  Similarity=0.314  Sum_probs=218.8

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYAT  154 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~  154 (457)
                      ..|++..++|++.++||+|+||+||+|+++     +++.||||+++...    ...+.+.+|+++|++++|||||+++++
T Consensus         6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~HpnIv~~~g~   76 (272)
T d1qpca_           6 DEWEVPRETLKLVERLGAGQFGEVWMGYYN-----GHTKVAVKSLKQGS----MSPDAFLAEANLMKQLQHQRLVRLYAV   76 (272)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEET-----TTEEEEEEEECTTS----SCHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             CCeecCHHHeEEeEEEecCCCcEEEEEEEC-----CCCEEEEEEEccCc----CCHHHHHHHHHHHHhCCCCCEeEEEee
Confidence            567788899999999999999999999975     57789999997543    234568899999999999999999998


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      +.+ +..|||||||++|+|.+++.......+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+
T Consensus        77 ~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGl  155 (272)
T d1qpca_          77 VTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGL  155 (272)
T ss_dssp             ECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             ecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccc
Confidence            864 5679999999999998877654445699999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++........                                                                     .
T Consensus       156 a~~~~~~~~~---------------------------------------------------------------------~  166 (272)
T d1qpca_         156 ARLIEDNEYT---------------------------------------------------------------------A  166 (272)
T ss_dssp             CEECSSSCEE---------------------------------------------------------------------C
T ss_pred             eEEccCCccc---------------------------------------------------------------------c
Confidence            8765422111                                                                     0


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcC-CCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG-TTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      .....||+.|||||++.+..++.++|||||||++|||+|| .+||......+.+..+. ...+.+.+..+++++.+||.+
T Consensus       167 ~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~-~~~~~~~p~~~~~~l~~li~~  245 (272)
T d1qpca_         167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLE-RGYRMVRPDNCPEELYQLMRL  245 (272)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHH
T ss_pred             ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHH-hcCCCCCcccChHHHHHHHHH
Confidence            1123589999999999988899999999999999999995 55566555555555544 445555666799999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhc--CCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKR--HQFFN  419 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~--hp~f~  419 (457)
                      ||+.||++|||    +++|++  |+||.
T Consensus       246 cl~~~P~~Rpt----~~ei~~~L~~~ft  269 (272)
T d1qpca_         246 CWKERPEDRPT----FDYLRSVLEDFFT  269 (272)
T ss_dssp             HTCSSGGGSCC----HHHHHHHHHHHHH
T ss_pred             HcCCCHhHCcC----HHHHHHHhhhhhh
Confidence            99999999999    999987  67775

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-56  Score=439.28  Aligned_cols=254  Identities=27%  Similarity=0.396  Sum_probs=210.1

Q ss_pred             cCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEEEEc
Q 012762           80 TLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYATLDC  157 (457)
Q Consensus        80 ~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~~~~  157 (457)
                      -+++|.++. .||+|+||+||+|+++    .+++.||||++++.        ..+.+|++++.++ +|||||+++++|.+
T Consensus         9 i~~~y~i~~~~lG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~--------~~~~~E~~~~~~~~~hpnIv~l~~~~~~   76 (335)
T d2ozaa1           9 IIDDYKVTSQVLGLGINGKVLQIFNK----RTQEKFALKMLQDC--------PKARREVELHWRASQCPHIVRIVDVYEN   76 (335)
T ss_dssp             GGGTEEEEEEEEEECSSCEEEEEEET----TTCCEEEEEEEECS--------HHHHHHHHHHHHHTTSTTBCCEEEEEEE
T ss_pred             cccCEEEeeEEeeeccCeEEEEEEEC----CCCCEEEEEEECCc--------HHHHHHHHHHHHhcCCCCCCeEEEEEee
Confidence            357899886 5999999999999986    47899999999643        3456799987654 89999999999865


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEe
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLT  230 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~  230 (457)
                          +.++|||||||+||+|.+++.......+++.+++.++.||+.||.|||++||+||||||+|||++.   ++.+||+
T Consensus        77 ~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~  156 (335)
T d2ozaa1          77 LYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLT  156 (335)
T ss_dssp             EETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEEC
T ss_pred             cccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccc
Confidence                467899999999999999998765668999999999999999999999999999999999999985   4679999


Q ss_pred             ccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccC
Q 012762          231 DFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEP  310 (457)
Q Consensus       231 DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (457)
                      |||+++.......                                                                   
T Consensus       157 DFG~a~~~~~~~~-------------------------------------------------------------------  169 (335)
T d2ozaa1         157 DFGFAKETTSHNS-------------------------------------------------------------------  169 (335)
T ss_dssp             CCTTCEECCCCCC-------------------------------------------------------------------
T ss_pred             ccceeeeccCCCc-------------------------------------------------------------------
Confidence            9999865532111                                                                   


Q ss_pred             CccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH----HhcccCCCCC--CCCC
Q 012762          311 LDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV----VARALEFPKE--PSVP  384 (457)
Q Consensus       311 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~----~~~~~~~~~~--~~~~  384 (457)
                          ....+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+.........+    ....+.++..  ..++
T Consensus       170 ----~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s  245 (335)
T d2ozaa1         170 ----LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVS  245 (335)
T ss_dssp             ----CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSC
T ss_pred             ----cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCC
Confidence                11346999999999999999999999999999999999999999876544433332    2233334332  3578


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                      +++++||.+||+.||++||+    +.|+++||||..
T Consensus       246 ~~~~~li~~~L~~dP~~R~s----~~eil~hp~~~~  277 (335)
T d2ozaa1         246 EEVKMLIRNLLKTEPTQRMT----ITEFMNHPWIMQ  277 (335)
T ss_dssp             HHHHHHHHHHSCSSTTTSCC----HHHHHHSHHHHT
T ss_pred             HHHHHHHHHHccCChhHCcC----HHHHHcCHHhhC
Confidence            89999999999999999999    999999999964

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-56  Score=427.15  Aligned_cols=251  Identities=25%  Similarity=0.364  Sum_probs=211.9

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhh---HHHHHHHHHHHHHHcC--CCCCceEEEEEE
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRN---KESRARIEREILEMLD--HPFLPTLYATLD  156 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~---~~~~~~~E~~il~~l~--H~nIv~l~~~~~  156 (457)
                      ++|++.+.||+|+||+||+|+++    .+|+.||||++.+.......   ...++.+|+++|++++  |||||++++++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~   79 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRV----SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE   79 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEEC----CCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEe
Confidence            57999999999999999999987    47899999999876543221   1234567999999996  899999999999


Q ss_pred             cCCcEEEEEeecCC-CChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccC-CCEEEeccCC
Q 012762          157 CPRWSCLLTEFCPG-GDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSD-GHIMLTDFDL  234 (457)
Q Consensus       157 ~~~~~~lV~E~~~~-~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~-~~vkl~DFG~  234 (457)
                      +.+..|+||||+.+ +++..++...  ..+++.+++.++.||+.||+|||++||+||||||+|||++.+ +.+||+|||+
T Consensus        80 ~~~~~~lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~  157 (273)
T d1xwsa_          80 RPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS  157 (273)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             eCCeEEEEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECcccc
Confidence            99999999999976 5777777664  679999999999999999999999999999999999999855 7999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.....                                                                        .
T Consensus       158 a~~~~~~------------------------------------------------------------------------~  165 (273)
T d1xwsa_         158 GALLKDT------------------------------------------------------------------------V  165 (273)
T ss_dssp             CEECCSS------------------------------------------------------------------------C
T ss_pred             ceecccc------------------------------------------------------------------------c
Confidence            8644311                                                                        1


Q ss_pred             cccccCCCCccCchhhcCCCC-CccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGH-GNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~-~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                      ..+++||+.|||||++.+..+ +.++|||||||++|||++|+.||.+..      .+......++.  .+++++++||.+
T Consensus       166 ~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~i~~~~~~~~~--~~s~~~~~li~~  237 (273)
T d1xwsa_         166 YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------EIIRGQVFFRQ--RVSSECQHLIRW  237 (273)
T ss_dssp             BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HHHHCCCCCSS--CCCHHHHHHHHH
T ss_pred             ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch------HHhhcccCCCC--CCCHHHHHHHHH
Confidence            113569999999999988765 678999999999999999999997632      34445555544  589999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ||+.||++|||    ++|+|+||||+++.
T Consensus       238 ~L~~dp~~R~s----~~eil~hp~~~~~~  262 (273)
T d1xwsa_         238 CLALRPSDRPT----FEEIQNHPWMQDVL  262 (273)
T ss_dssp             HTCSSGGGSCC----HHHHHTSGGGSSCC
T ss_pred             HccCCHhHCcC----HHHHhcCHhhCCCC
Confidence            99999999999    99999999999754

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-55  Score=427.01  Aligned_cols=264  Identities=22%  Similarity=0.320  Sum_probs=210.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      .+..++|++.++||+|+||+||+|+++... .....||||.+....  .....+.+.+|+++|++++|||||++++++..
T Consensus        22 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~   98 (299)
T d1jpaa_          22 EIDISCVKIEQVIGAGEFGEVCSGHLKLPG-KREIFVAIKTLKSGY--TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTK   98 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEECC----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred             hhChhhcEEeeEEeeCCCeEEEEEEEeCCC-CEEEEEEEEEECccc--CHHHHHHHHHHHHHHHhCCCCCCccEEEEEee
Confidence            466788999999999999999999986421 133468999886542  23445678899999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      ++.+|||||||++|+|..++... .+.+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+++.
T Consensus        99 ~~~~~iv~Ey~~~g~L~~~~~~~-~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  177 (299)
T d1jpaa_          99 STPVMIITEFMENGSLDSFLRQN-DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRF  177 (299)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             CCEEEEEEEecCCCcceeeeccc-cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceE
Confidence            99999999999999999887764 35699999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .........                                                                 ......
T Consensus       178 ~~~~~~~~~-----------------------------------------------------------------~~~~~~  192 (299)
T d1jpaa_         178 LEDDTSDPT-----------------------------------------------------------------YTSALG  192 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCcce-----------------------------------------------------------------eeeccc
Confidence            543221110                                                                 001112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..||+.|||||++.+..|+.++|||||||++|||++ |+.||.+....+....+. ...+.+.+..++.++.+||.+||+
T Consensus       193 ~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~~li~~cl~  271 (299)
T d1jpaa_         193 GKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIE-QDYRLPPPMDCPSALHQLMLDCWQ  271 (299)
T ss_dssp             ---CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH-TTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             ccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHH-cCCCCCCCccchHHHHHHHHHHcC
Confidence            358999999999999999999999999999999998 899999988776666554 445566667799999999999999


Q ss_pred             hCCCCCCCCCcChHHHhcC
Q 012762          397 KDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~h  415 (457)
                      .||++||+    +.||+++
T Consensus       272 ~~P~~RPs----~~ei~~~  286 (299)
T d1jpaa_         272 KDRNHRPK----FGQIVNT  286 (299)
T ss_dssp             SSTTTSCC----HHHHHHH
T ss_pred             CCHhHCcC----HHHHHHH
Confidence            99999999    7777654

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-55  Score=428.39  Aligned_cols=263  Identities=24%  Similarity=0.337  Sum_probs=214.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc---CCCCCceEEEEEEc-
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML---DHPFLPTLYATLDC-  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l---~H~nIv~l~~~~~~-  157 (457)
                      ++|+++++||+|+||+||+|+++.   .+++.||||+++..... ......+.+|+++|+.|   +||||++++++|.. 
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~---~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~   82 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLK---NGGRFVALKRVRVQTGE-EGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   82 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETT---TTTEEEEEEEEEEEBCT-TSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             CCEEEEEEEecccCeEEEEEEEEC---CCCEEEEEEEEehhhcc-chHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccc
Confidence            689999999999999999999753   24678999999764322 22233455688887766   79999999999853 


Q ss_pred             ----CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          158 ----PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       158 ----~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                          ..++|++||||+++.+.. ........+++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||
T Consensus        83 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg  161 (305)
T d1blxa_          83 RTDRETKLTLVFEHVDQDLTTY-LDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFG  161 (305)
T ss_dssp             ECSSEEEEEEEEECCSCBHHHH-HHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             ccccCceEEEEEEeccCCchhh-hhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchh
Confidence                346899999997776654 344445789999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++.....                                                                       .
T Consensus       162 ~~~~~~~~-----------------------------------------------------------------------~  170 (305)
T d1blxa_         162 LARIYSFQ-----------------------------------------------------------------------M  170 (305)
T ss_dssp             SCCCCCGG-----------------------------------------------------------------------G
T ss_pred             hhhhhccc-----------------------------------------------------------------------c
Confidence            97543211                                                                       1


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      .....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.+..++.......               
T Consensus       171 ~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  250 (305)
T d1blxa_         171 ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAF  250 (305)
T ss_dssp             GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGS
T ss_pred             cCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhh
Confidence            11234799999999999999999999999999999999999999999888777777654321110               


Q ss_pred             ----------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          379 ----------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       379 ----------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                ....+++.+++||.+||+.||++|||    ++|+|+||||++++++
T Consensus       251 ~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~s----a~e~L~Hpff~~i~~~  302 (305)
T d1blxa_         251 HSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRIS----AYSALSHPYFQDLERC  302 (305)
T ss_dssp             CCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTCCCC
T ss_pred             ccccccchhhccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcChhhcCchhh
Confidence                      11346788999999999999999999    9999999999998764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-55  Score=418.74  Aligned_cols=253  Identities=23%  Similarity=0.311  Sum_probs=208.1

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      ++.++|+++++||+|+||+||+|+++     ++..||||++++..    ...+.+.+|++++++++|||||++++++..+
T Consensus         2 idp~~~~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~i~~~~----~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~   72 (263)
T d1sm2a_           2 IDPSELTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIREGA----MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ   72 (263)
T ss_dssp             BCCSCEEEEEEEECCSSCCEEEEEET-----TTEEEEEEECCSSS----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CChHHcEEEEEEeeCCCeEEEEEEEC-----CCCEEEEEEECCCc----CcHHHHHHHHHHHHhcCCCCcccccceeccC
Confidence            35578999999999999999999975     56789999997643    2345688899999999999999999999999


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..|||||||++|+|.+++... ...+++..++.++.||+.||+|||+++|+||||||+||||+.++.+||+|||+++..
T Consensus        73 ~~~~lv~E~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          73 APICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----
T ss_pred             CceEEEEEecCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheec
Confidence            9999999999999999987664 366899999999999999999999999999999999999999999999999998655


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ......                                                                     .....
T Consensus       152 ~~~~~~---------------------------------------------------------------------~~~~~  162 (263)
T d1sm2a_         152 LDDQYT---------------------------------------------------------------------SSTGT  162 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCce---------------------------------------------------------------------eecce
Confidence            322111                                                                     01123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .||+.|||||++.+..|+.++|||||||++|||++ |.+||......+.+..+.. ..+.+.+..+++++.+||.+||+.
T Consensus       163 ~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~~cl~~  241 (263)
T d1sm2a_         163 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIST-GFRLYKPRLASTHVYQIMNHCWKE  241 (263)
T ss_dssp             --CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHH-TCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             ecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHh-cCCCCCccccCHHHHHHHHHHccC
Confidence            58999999999999999999999999999999999 5677776666666665544 344555566899999999999999


Q ss_pred             CCCCCCCCCcChHHHhcC
Q 012762          398 DPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~h  415 (457)
                      ||++||+    ++||++|
T Consensus       242 ~p~~Rps----~~~il~~  255 (263)
T d1sm2a_         242 RPEDRPA----FSRLLRQ  255 (263)
T ss_dssp             SGGGSCC----HHHHHHH
T ss_pred             CHhHCcC----HHHHHHH
Confidence            9999999    9999876

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-56  Score=422.85  Aligned_cols=262  Identities=21%  Similarity=0.307  Sum_probs=213.4

Q ss_pred             CceeE-EEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCcE
Q 012762           83 DLRFV-HRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRWS  161 (457)
Q Consensus        83 ~~~~~-~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~~  161 (457)
                      .+.+. ++||+|+||+||+|.++..  ..++.||||+++... ......+++.+|+++|++++|||||++++++..+ ..
T Consensus         7 ~~~le~k~iG~G~fG~Vy~~~~~~~--~~~~~vAvK~~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~   82 (277)
T d1xbba_           7 LLTLEDKELGSGNFGTVKKGYYQMK--KVVKTVAVKILKNEA-NDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SW   82 (277)
T ss_dssp             GEEEEEEEEEECSSEEEEEEEEECS--SSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SE
T ss_pred             hCeecCCCcccCCCeEEEEEEEccC--CcCeEEEEEEEChhh-CCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CE
Confidence            34444 4699999999999987632  356889999997543 2334457788999999999999999999999754 57


Q ss_pred             EEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCC
Q 012762          162 CLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNS  241 (457)
Q Consensus       162 ~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~  241 (457)
                      |||||||++|+|.+++...  ..+++..+..++.||+.||+|||++|||||||||+||||+.++.+||+|||+++.....
T Consensus        83 ~lvmE~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~  160 (277)
T d1xbba_          83 MLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD  160 (277)
T ss_dssp             EEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred             EEEEEcCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhcccc
Confidence            8999999999999998875  67999999999999999999999999999999999999999999999999998765422


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCC
Q 012762          242 TSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGT  321 (457)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  321 (457)
                      .....                                                                   ......||
T Consensus       161 ~~~~~-------------------------------------------------------------------~~~~~~gt  173 (277)
T d1xbba_         161 ENYYK-------------------------------------------------------------------AQTHGKWP  173 (277)
T ss_dssp             CSEEE-------------------------------------------------------------------C----CCC
T ss_pred             ccccc-------------------------------------------------------------------cccccCCC
Confidence            11110                                                                   01123589


Q ss_pred             CCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCC
Q 012762          322 HEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPT  400 (457)
Q Consensus       322 ~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~  400 (457)
                      +.|||||++.+..++.++|||||||++|||++ |+.||.+....+....+.. ..+.+.+..+|+++.+||.+||+.||+
T Consensus       174 ~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~~~~li~~cl~~dp~  252 (277)
T d1xbba_         174 VKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEK-GERMGCPAGCPREMYDLMNLCWTYDVE  252 (277)
T ss_dssp             GGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSTT
T ss_pred             ceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHc-CCCCCCCcccCHHHHHHHHHHcCCCHh
Confidence            99999999999999999999999999999997 9999999887766655544 345555567999999999999999999


Q ss_pred             CCCCCCcChHHH---hcCCCCCCCC
Q 012762          401 RRMGSKMGATAI---KRHQFFNGVN  422 (457)
Q Consensus       401 ~Rps~~~~~~~l---l~hp~f~~~~  422 (457)
                      +||+    +++|   |+|+|++.++
T Consensus       253 ~RPs----~~~i~~~L~~~~~~~~~  273 (277)
T d1xbba_         253 NRPG----FAAVELRLRNYYYDVVN  273 (277)
T ss_dssp             TSCC----HHHHHHHHHHHHHHHHH
T ss_pred             HCcC----HHHHHHHhhCHHhhcCC
Confidence            9999    7777   5777765433

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-55  Score=420.92  Aligned_cols=263  Identities=22%  Similarity=0.319  Sum_probs=217.3

Q ss_pred             CCCCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           74 NNNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        74 ~~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ...|+++.++|++.+.||+|+||+||+|+++     ++..||||+++...    ...+.+.+|+++|++++|||||++++
T Consensus         9 ~~~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~-----~~~~vAiK~l~~~~----~~~~~~~~E~~~l~~l~h~nIv~~~g   79 (285)
T d1fmka3           9 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWN-----GTTRVAIKTLKPGT----MSPEAFLQEAQVMKKLRHEKLVQLYA   79 (285)
T ss_dssp             TTCSBCCGGGEEEEEEEEECSSCEEEEEEET-----TTEEEEEEECCTTS----SCHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcceEcCHHHEEEeeEEeeCCCeEEEEEEEC-----CCCEEEEEEECccc----CCHHHHHHHHHHHHhcccCCEeEEEE
Confidence            3567888999999999999999999999985     45679999997543    23466888999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFD  233 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG  233 (457)
                      ++.+ +.+++|||||++|+|..++.......+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||
T Consensus        80 ~~~~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfG  158 (285)
T d1fmka3          80 VVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFG  158 (285)
T ss_dssp             EECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred             EEec-CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccc
Confidence            9865 567899999999999888776545679999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcc
Q 012762          234 LSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDV  313 (457)
Q Consensus       234 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
                      +++........                                                                     
T Consensus       159 la~~~~~~~~~---------------------------------------------------------------------  169 (285)
T d1fmka3         159 LARLIEDNEYT---------------------------------------------------------------------  169 (285)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             hhhhccCCCce---------------------------------------------------------------------
Confidence            98654321110                                                                     


Q ss_pred             ccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCC-CCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHH
Q 012762          314 RSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT-TPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIA  392 (457)
Q Consensus       314 ~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~-~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  392 (457)
                      ......||+.|+|||++.+..++.++|||||||++|||++|. +||......+.+..+ ......+....++.++++||.
T Consensus       170 ~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~l~~li~  248 (285)
T d1fmka3         170 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQV-ERGYRMPCPPECPESLHDLMC  248 (285)
T ss_dssp             ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHH-HTTCCCCCCTTSCHHHHHHHH
T ss_pred             eeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHH-HhcCCCCCCcccCHHHHHHHH
Confidence            011235899999999999999999999999999999999965 455555555555444 445566667789999999999


Q ss_pred             HHhhhCCCCCCCCCcChHHHhc--CCCCCC
Q 012762          393 QLLVKDPTRRMGSKMGATAIKR--HQFFNG  420 (457)
Q Consensus       393 ~~L~~dP~~Rps~~~~~~~ll~--hp~f~~  420 (457)
                      +||+.||++||+    +++|++  ++||..
T Consensus       249 ~cl~~dP~~Rps----~~~i~~~L~~~~~~  274 (285)
T d1fmka3         249 QCWRKEPEERPT----FEYLQAFLEDYFTS  274 (285)
T ss_dssp             HHTCSSGGGSCC----HHHHHHHHHTTTSC
T ss_pred             HHcccCHhHCcC----HHHHHHHHhhhhcC
Confidence            999999999999    999987  888875

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-55  Score=420.93  Aligned_cols=264  Identities=21%  Similarity=0.294  Sum_probs=217.6

Q ss_pred             CccCCCceeEE-EecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEE
Q 012762           78 PLTLSDLRFVH-RLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLD  156 (457)
Q Consensus        78 ~~~~~~~~~~~-~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~  156 (457)
                      .+..++|.+.+ +||+|+||+||+|.++..  .++..||||++++..  .....+++.+|+++|++++|||||++++++.
T Consensus         4 ~l~~~~~~~~~~~iG~G~fg~Vy~~~~~~~--~~~~~vAvK~l~~~~--~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~   79 (285)
T d1u59a_           4 FLKRDNLLIADIELGCGNFGSVRQGVYRMR--KKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVCQ   79 (285)
T ss_dssp             BCCGGGEEEEEEEEECCTTEEEEEEEEC-----CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred             eecccCeEECCcEEecccCeEEEEEEEecC--CCcEEEEEEEEChhc--CHHHHHHHHHHHHHHHhCCCCCEeeEeeeec
Confidence            45667899988 499999999999987632  356689999997542  3345677889999999999999999999997


Q ss_pred             cCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          157 CPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       157 ~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      . +.+|||||||++|+|.+++... ...+++..++.++.||+.||+|||++|||||||||+||||+.++.+||+|||+++
T Consensus        80 ~-~~~~lvmE~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~  157 (285)
T d1u59a_          80 A-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK  157 (285)
T ss_dssp             S-SSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             c-CeEEEEEEeCCCCcHHHHhhcc-ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhh
Confidence            5 4689999999999999887543 3579999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      ..........                                                                   ...
T Consensus       158 ~~~~~~~~~~-------------------------------------------------------------------~~~  170 (285)
T d1u59a_         158 ALGADDSYYT-------------------------------------------------------------------ARS  170 (285)
T ss_dssp             ECTTCSCEEC-------------------------------------------------------------------CCC
T ss_pred             cccccccccc-------------------------------------------------------------------ccc
Confidence            6543221110                                                                   011


Q ss_pred             cccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHh
Q 012762          317 SFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L  395 (457)
                      ...||+.|||||++.+..++.++|||||||++|||++ |+.||.+....+....+.. ..+.+.+..+|+++.+||.+||
T Consensus       171 ~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~~cl  249 (285)
T d1u59a_         171 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ-GKRMECPPECPPELYALMSDCW  249 (285)
T ss_dssp             SSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHTT
T ss_pred             ccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHc-CCCCCCCCcCCHHHHHHHHHHc
Confidence            2358999999999999999999999999999999998 9999998887766665554 3445555679999999999999


Q ss_pred             hhCCCCCCCCCcChHHH---hcCCCCC
Q 012762          396 VKDPTRRMGSKMGATAI---KRHQFFN  419 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~l---l~hp~f~  419 (457)
                      +.||++||+    +.+|   |+|+|+.
T Consensus       250 ~~~p~~RPs----~~~i~~~L~~~~~~  272 (285)
T d1u59a_         250 IYKWEDRPD----FLTVEQRMRACYYS  272 (285)
T ss_dssp             CSSGGGSCC----HHHHHHHHHHHHHH
T ss_pred             CCCHhHCcC----HHHHHHHHHHHHHH
Confidence            999999999    6655   6777763

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.2e-55  Score=422.48  Aligned_cols=258  Identities=22%  Similarity=0.342  Sum_probs=214.7

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|+++     +|+.||||+++.... ......++.+|+++|++++|||||++++++..++.
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~   74 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-----YGETFALKKIRLEKE-DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKR   74 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-----TSCEEEEEEECCSSG-GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSC
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-----CCCEEEEEEEehhhc-ChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCc
Confidence            468999999999999999999874     678999999976543 33445778889999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .|++||++.++.+..+...  .+.+++..++.++.||+.||+|||+.|||||||||+|||++.++.+||+|||++.....
T Consensus        75 ~~i~~e~~~~~~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~  152 (286)
T d1ob3a_          75 LVLVFEHLDQDLKKLLDVC--EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI  152 (286)
T ss_dssp             EEEEEECCSEEHHHHHHTS--TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC
T ss_pred             eeEEEEeehhhhHHHHHhh--cCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceeccc
Confidence            9999999977766665544  37899999999999999999999999999999999999999999999999999765432


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ...                                                                      .....+|
T Consensus       153 ~~~----------------------------------------------------------------------~~~~~~~  162 (286)
T d1ob3a_         153 PVR----------------------------------------------------------------------KYTHEIV  162 (286)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             Ccc----------------------------------------------------------------------ccceecc
Confidence            110                                                                      1113468


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------------
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------------  378 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------------  378 (457)
                      ++.|+|||.+.+.. ++.++|||||||++|||++|+.||.+....+.+.++........                     
T Consensus       163 ~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (286)
T d1ob3a_         163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE  242 (286)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC
T ss_pred             cchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhccccccccc
Confidence            99999999997654 69999999999999999999999998887777666654222111                     


Q ss_pred             ------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 ------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 ------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                            ....+++++++||.+||+.||++|||    +.|||+||||+.
T Consensus       243 ~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s----~~ell~Hp~f~~  286 (286)
T d1ob3a_         243 PLPWESFLKGLDESGIDLLSKMLKLDPNQRIT----AKQALEHAYFKE  286 (286)
T ss_dssp             CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCC----HHHHHTSGGGGC
T ss_pred             CcchhhhcccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCc
Confidence                  01345778999999999999999999    999999999973

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-55  Score=414.03  Aligned_cols=252  Identities=21%  Similarity=0.317  Sum_probs=219.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      +.++|+++++||+|+||+||+|+++     +++.||||++++...    ..+.+.+|++++++++||||+++++++.+++
T Consensus         2 ~~~~~~~~~~iG~G~fg~Vy~~~~~-----~~~~vAvK~l~~~~~----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~   72 (258)
T d1k2pa_           2 DPKDLTFLKELGTGQFGVVKYGKWR-----GQYDVAIKMIKEGSM----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR   72 (258)
T ss_dssp             CCCCCCCCCCCCEETTEEEEEEEET-----TTEEEEEEEEESSSS----CHHHHHHHHHHHHTCCCTTBCCEEEEECCSS
T ss_pred             ChHHCEEeEEEecCCCeEEEEEEEC-----CCCEEEEEEECcCcC----CHHHHHHHHHHHHhcCCCceeeEEEEEeeCC
Confidence            4578999999999999999999975     678899999986533    3456888999999999999999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      .+++||||+++|+|..++... ...+++..++.++.||++||.|||++||+||||||+|||++.++.+||+|||+++...
T Consensus        73 ~~~iv~Ey~~~g~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~  151 (258)
T d1k2pa_          73 PIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL  151 (258)
T ss_dssp             SEEEEEECCTTEEHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCS
T ss_pred             ceEEEEEccCCCcHHHhhhcc-ccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheecc
Confidence            999999999999998886554 3568999999999999999999999999999999999999999999999999986554


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      .....                                                                     ......
T Consensus       152 ~~~~~---------------------------------------------------------------------~~~~~~  162 (258)
T d1k2pa_         152 DDEYT---------------------------------------------------------------------SSVGSK  162 (258)
T ss_dssp             SSSCC---------------------------------------------------------------------CCCCSC
T ss_pred             CCCce---------------------------------------------------------------------eecccC
Confidence            22111                                                                     011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.+..+....+..+ .+.+.+..++..+.+||.+||+.|
T Consensus       163 ~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~-~~~~~p~~~~~~l~~li~~cl~~d  241 (258)
T d1k2pa_         163 FPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG-LRLYRPHLASEKVYTIMYSCWHEK  241 (258)
T ss_dssp             CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHTTCSS
T ss_pred             CCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhC-CCCCCcccccHHHHHHHHHHccCC
Confidence            8999999999999999999999999999999998 89999999888777766654 455566678999999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++|||    +++|++|
T Consensus       242 P~~RPt----~~eil~~  254 (258)
T d1k2pa_         242 ADERPT----FKILLSN  254 (258)
T ss_dssp             GGGSCC----HHHHHHH
T ss_pred             HhHCcC----HHHHHHH
Confidence            999999    9999886

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.4e-55  Score=417.80  Aligned_cols=256  Identities=22%  Similarity=0.333  Sum_probs=212.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      ++|++.+.||+|+||+||+|+++    .+|+.||||++++..........++.+|+++|+.++|||||++++++...+  
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~   82 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDL----RLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSS
T ss_pred             ceeEEeEEEeeCCCeEEEEEEEC----CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCC
Confidence            57999999999999999999987    479999999998765555556678899999999999999999999997654  


Q ss_pred             --cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          160 --WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       160 --~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                        .+|||||||+|++|..++...  +.+++.+++.++.||+.||+|||++|||||||||+|||++.++.++|+|||++..
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~  160 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARA  160 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEE
T ss_pred             CceEEEEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhh
Confidence              379999999999999888765  6799999999999999999999999999999999999999999999999998754


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      .......                                                                   .....+
T Consensus       161 ~~~~~~~-------------------------------------------------------------------~~~~~~  173 (277)
T d1o6ya_         161 IADSGNS-------------------------------------------------------------------VTQTAA  173 (277)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hcccccc-------------------------------------------------------------------cccccc
Confidence            4321110                                                                   111224


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC--CCCCCChHHHHHHHHHh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP--KEPSVPGPAKDLIAQLL  395 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~L  395 (457)
                      .+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+...+++......+  ....+|+++.+||.+||
T Consensus       174 ~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L  253 (277)
T d1o6ya_         174 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKAL  253 (277)
T ss_dssp             -----TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHT
T ss_pred             ccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHc
Confidence            5799999999999999999999999999999999999999999888887777777655443  23568999999999999


Q ss_pred             hhCCCCCCCCCcChHHHh
Q 012762          396 VKDPTRRMGSKMGATAIK  413 (457)
Q Consensus       396 ~~dP~~Rps~~~~~~~ll  413 (457)
                      +.||++||+.   +++++
T Consensus       254 ~~dp~~R~~s---a~~l~  268 (277)
T d1o6ya_         254 AKNPENRYQT---AAEMR  268 (277)
T ss_dssp             CSSGGGSCSS---HHHHH
T ss_pred             cCCHhHCHhH---HHHHH
Confidence            9999999952   55554

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-54  Score=414.01  Aligned_cols=262  Identities=20%  Similarity=0.268  Sum_probs=210.8

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC  157 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~  157 (457)
                      ++..+.|++.+.||+|+||+||+|.++.........||||++....  .......+.+|+++|++++|||||++++++..
T Consensus         3 ei~~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~   80 (283)
T d1mqba_           3 EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK   80 (283)
T ss_dssp             BCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             cCCHHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECccc--ChHHHHHHHHHHHHHHhcCCCCEeeeeEEEec
Confidence            4666789999999999999999999875444445689999996542  23345568889999999999999999999999


Q ss_pred             CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcC
Q 012762          158 PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLK  237 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~  237 (457)
                      .+..++|||||.+++|..++... ...+++..+..++.||+.||+|||+++|+||||||+||||+.++.+||+|||+++.
T Consensus        81 ~~~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          81 YKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             CCceEEEEEecccCcchhhhhcc-cccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhc
Confidence            99999999999999998877654 36799999999999999999999999999999999999999999999999999876


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ........                                                                   .....
T Consensus       160 ~~~~~~~~-------------------------------------------------------------------~~~~~  172 (283)
T d1mqba_         160 LEDDPEAT-------------------------------------------------------------------YTTSG  172 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCccc-------------------------------------------------------------------eEecc
Confidence            54221100                                                                   00112


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCC-CCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhh
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTP-FKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLV  396 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~P-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~  396 (457)
                      ..||+.|||||++.+..++.++|||||||++|||++|..| |.+....+.+ ..+....+.+.+..++..+.+||.+||+
T Consensus       173 ~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~l~~li~~cl~  251 (283)
T d1mqba_         173 GKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVM-KAINDGFRLPTPMDCPSAIYQLMMQCWQ  251 (283)
T ss_dssp             -CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH-HHHHTTCCCCCCTTCBHHHHHHHHHHTC
T ss_pred             CCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHH-HHHhccCCCCCchhhHHHHHHHHHHHCc
Confidence            3589999999999999999999999999999999996554 5554544444 4455556667667799999999999999


Q ss_pred             hCCCCCCCCCcChHHHhc
Q 012762          397 KDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       397 ~dP~~Rps~~~~~~~ll~  414 (457)
                      .||++||+    +.||++
T Consensus       252 ~~p~~RPt----~~eil~  265 (283)
T d1mqba_         252 QERARRPK----FADIVS  265 (283)
T ss_dssp             SSTTTSCC----HHHHHH
T ss_pred             CCHhHCcC----HHHHHH
Confidence            99999999    888866

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-54  Score=412.33  Aligned_cols=261  Identities=23%  Similarity=0.367  Sum_probs=212.1

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      +|++..++|++.+.||+|+||+||+|++...+ ..+..||||+++..  ........+.+|+++|++++|||||++++++
T Consensus         1 ~~ei~~~~~~l~~~iG~G~fg~Vy~a~~~~~~-~~~~~vaik~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~   77 (273)
T d1mp8a_           1 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPE-NPALAVAIKTCKNC--TSDSVREKFLQEALTMRQFDHPHIVKLIGVI   77 (273)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC---CCEEEEEEECTTT--TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             CCCcCHHHeEEEEEEeeCCCcEEEEEEEecCC-ceeEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            36678889999999999999999999876422 24567899988543  3344567788999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                      . ++.+|||||||++|+|..++... ...+++..++.++.||+.||.|||++|||||||||+||+++.++.+||+|||++
T Consensus        78 ~-~~~~~iv~E~~~~g~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a  155 (273)
T d1mp8a_          78 T-ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS  155 (273)
T ss_dssp             C-SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC----
T ss_pred             e-cCeEEEEEEeccCCcHHhhhhcc-CCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhh
Confidence            6 46789999999999998877654 367999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +........                                                                     ..
T Consensus       156 ~~~~~~~~~---------------------------------------------------------------------~~  166 (273)
T d1mp8a_         156 RYMEDSTYY---------------------------------------------------------------------KA  166 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccCCcce---------------------------------------------------------------------ec
Confidence            765422111                                                                     01


Q ss_pred             ccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHH
Q 012762          316 MSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQL  394 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  394 (457)
                      ....||+.|+|||++.+..|+.++|||||||++|||++ |.+||.+....+....+..+ ...+.+..+++++.+||.+|
T Consensus       167 ~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~li~~c  245 (273)
T d1mp8a_         167 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG-ERLPMPPNCPPTLYSLMTKC  245 (273)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT-CCCCCCTTCCHHHHHHHHHH
T ss_pred             cceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHH
Confidence            12358999999999999999999999999999999997 89999998887777776654 34455667999999999999


Q ss_pred             hhhCCCCCCCCCcChHHHhcC
Q 012762          395 LVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       395 L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      |+.||++|||    +.||++|
T Consensus       246 l~~dp~~Rps----~~ei~~~  262 (273)
T d1mp8a_         246 WAYDPSRRPR----FTELKAQ  262 (273)
T ss_dssp             TCSSGGGSCC----HHHHHHH
T ss_pred             cCCCHhHCcC----HHHHHHH
Confidence            9999999999    9999876

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-54  Score=425.54  Aligned_cols=258  Identities=28%  Similarity=0.376  Sum_probs=211.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC-
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR-  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~-  159 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++++.. ......+.+.+|+++|+.++|||||+++++|...+ 
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~----~~~~~vAiK~i~~~~-~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~   91 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDG----RTGAKVAIKKLYRPF-QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDET   91 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEET----TTCCEEEEEECSSTT-SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSS
T ss_pred             CCcEEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEchhh-cChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcc
Confidence            468999999999999999999987    478999999997643 23445677889999999999999999999997655 


Q ss_pred             -----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          160 -----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       160 -----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                           ++||||||| +.+|..+.+.   ..+++..++.++.||+.||.|||++|||||||||+|||++.++.+|++|||+
T Consensus        92 ~~~~~~~~lv~e~~-~~~l~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~  167 (346)
T d1cm8a_          92 LDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL  167 (346)
T ss_dssp             TTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ccccceEEEEEecc-cccHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccc
Confidence                 579999999 7888887766   5799999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.....                                                                         
T Consensus       168 a~~~~~~-------------------------------------------------------------------------  174 (346)
T d1cm8a_         168 ARQADSE-------------------------------------------------------------------------  174 (346)
T ss_dssp             CEECCSS-------------------------------------------------------------------------
T ss_pred             eeccCCc-------------------------------------------------------------------------
Confidence            8654321                                                                         


Q ss_pred             cccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCC---------------
Q 012762          315 SMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFP---------------  378 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~---------------  378 (457)
                      ....+||+.|+|||++.+. .++.++|||||||++|||++|++||.+.+....+..+.......+               
T Consensus       175 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T d1cm8a_         175 MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNY  254 (346)
T ss_dssp             CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHH
T ss_pred             cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhh
Confidence            1134699999999999875 468999999999999999999999998876665555443222111               


Q ss_pred             --------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          379 --------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       379 --------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                    ....+++++++||.+||..||.+|||    ++|||+||||+.+.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~eiL~Hp~f~~~~~~  310 (346)
T d1cm8a_         255 MKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVT----AGEALAHPYFESLHDT  310 (346)
T ss_dssp             HHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGTTTC--
T ss_pred             hccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcC----HHHHhcChhhCcCCCc
Confidence                          11346789999999999999999999    9999999999987654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-54  Score=411.73  Aligned_cols=262  Identities=22%  Similarity=0.319  Sum_probs=213.8

Q ss_pred             ccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC
Q 012762           79 LTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP  158 (457)
Q Consensus        79 ~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~  158 (457)
                      +..+||++++.||+|+||+||+|++.... .....||||++++.........+.+.+|+++|++++|||||++++++.+ 
T Consensus         5 i~~~d~~~~~~iG~G~fg~Vy~~~~~~~~-~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-   82 (273)
T d1u46a_           5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPS-GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-   82 (273)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTT-SCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-
T ss_pred             EchHHeEEEEEEecCCCeEEEEEEEECCC-CcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-
Confidence            45578999999999999999999876422 2455799999987766556666788999999999999999999999976 


Q ss_pred             CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCC
Q 012762          159 RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKG  238 (457)
Q Consensus       159 ~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~  238 (457)
                      +..++|||||++|+|.+.+... .+.+++..++.++.||+.||.|||++||+||||||+||||+.++.+||+|||+++..
T Consensus        83 ~~~~lv~e~~~~~~l~~~~~~~-~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~  161 (273)
T d1u46a_          83 PPMKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL  161 (273)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             cchheeeeeecCcchhhhhhcc-cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhc
Confidence            4678999999999998776653 256999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccc
Q 012762          239 DNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSF  318 (457)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (457)
                      ........                                                                   .....
T Consensus       162 ~~~~~~~~-------------------------------------------------------------------~~~~~  174 (273)
T d1u46a_         162 PQNDDHYV-------------------------------------------------------------------MQEHR  174 (273)
T ss_dssp             CC-CCEEE-------------------------------------------------------------------C----
T ss_pred             ccCCCcce-------------------------------------------------------------------ecCcc
Confidence            43221110                                                                   11123


Q ss_pred             cCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhh
Q 012762          319 VGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVK  397 (457)
Q Consensus       319 ~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~  397 (457)
                      .|+..|+|||++.+..++.++|||||||++|||++ |..||.+.+..+...++......++....+++++.+||.+||..
T Consensus       175 ~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~  254 (273)
T d1u46a_         175 KVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAH  254 (273)
T ss_dssp             -CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCS
T ss_pred             ccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCC
Confidence            58889999999999999999999999999999998 89999999988888888888877777778999999999999999


Q ss_pred             CCCCCCCCCcChHHHhc
Q 012762          398 DPTRRMGSKMGATAIKR  414 (457)
Q Consensus       398 dP~~Rps~~~~~~~ll~  414 (457)
                      ||++|||    +.+|++
T Consensus       255 dp~~RPt----~~ei~~  267 (273)
T d1u46a_         255 KPEDRPT----FVALRD  267 (273)
T ss_dssp             SGGGSCC----HHHHHH
T ss_pred             ChhHCcC----HHHHHH
Confidence            9999999    888864

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-54  Score=414.26  Aligned_cols=265  Identities=18%  Similarity=0.267  Sum_probs=212.2

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      |++..++|++.++||+|+||+||+|+++... ..+++.||||+++...  .......+..|.+++.++ +|+||+.++++
T Consensus         8 wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~   85 (299)
T d1ywna1           8 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA--THSEHRALMSELKILIHIGHHLNVVNLLGA   85 (299)
T ss_dssp             HBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC------CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEcccc--CcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence            4577789999999999999999999987542 3456789999997543  233455677788887776 68999999998


Q ss_pred             EEcC-CcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCe
Q 012762          155 LDCP-RWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENV  219 (457)
Q Consensus       155 ~~~~-~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NI  219 (457)
                      +... ..+|+|||||++|+|.+++....              ...+++..++.++.||+.||.|||++|||||||||+||
T Consensus        86 ~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NI  165 (299)
T d1ywna1          86 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI  165 (299)
T ss_dssp             ECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccce
Confidence            8654 46899999999999999987642              23589999999999999999999999999999999999


Q ss_pred             EEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCC
Q 012762          220 LVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLG  299 (457)
Q Consensus       220 ll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (457)
                      ||+.++.+||+|||+++........                                                       
T Consensus       166 Ll~~~~~~Kl~DFGla~~~~~~~~~-------------------------------------------------------  190 (299)
T d1ywna1         166 LLSEKNVVKICDFGLARDIYKDPDY-------------------------------------------------------  190 (299)
T ss_dssp             EECGGGCEEECC------CCSCTTS-------------------------------------------------------
T ss_pred             eECCCCcEEEccCcchhhccccccc-------------------------------------------------------
Confidence            9999999999999998754322110                                                       


Q ss_pred             CCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcC-CCCCCCCChHHHHHHHHhcccCCC
Q 012762          300 NPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG-TTPFKGIDHELTLANVVARALEFP  378 (457)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~~~~~~~~~~~~~~~  378 (457)
                                   ......+||+.|||||++.+..++.++|||||||++|||++| .+||.+......+..++.....++
T Consensus       191 -------------~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~  257 (299)
T d1ywna1         191 -------------VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMR  257 (299)
T ss_dssp             -------------CCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCC
T ss_pred             -------------cccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCC
Confidence                         011234699999999999999999999999999999999986 578888776666666666666666


Q ss_pred             CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          379 KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       379 ~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .+..+++++++||.+||+.||++|||    ++||++|
T Consensus       258 ~~~~~~~~l~~li~~cl~~dP~~Rpt----~~eil~~  290 (299)
T d1ywna1         258 APDYTTPEMYQTMLDCWHGEPSQRPT----FSELVEH  290 (299)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CCccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            66679999999999999999999999    9999987

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-54  Score=417.22  Aligned_cols=264  Identities=25%  Similarity=0.332  Sum_probs=211.1

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc--
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC--  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~--  157 (457)
                      .+++|+++++||+|+||+||+|+++    .+|+.||||++.+... .+....++.+|+++|++++||||+++++++..  
T Consensus         8 ~~~rY~i~~~LG~G~fg~Vy~a~~~----~~~~~vAvK~i~~~~~-~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~   82 (318)
T d3blha1           8 EVSKYEKLAKIGQGTFGEVFKARHR----KTGQKVALKKVLMENE-KEGFPITALREIKILQLLKHENVVNLIEICRTKA   82 (318)
T ss_dssp             BGGGEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEC----C-TTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--
T ss_pred             ccCCEEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEEehhhc-chHHHHHHHHHHHHHHHhcCCCccceEeeeeccc
Confidence            3579999999999999999999986    4789999999976543 23445667889999999999999999998855  


Q ss_pred             ------CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEec
Q 012762          158 ------PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTD  231 (457)
Q Consensus       158 ------~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~D  231 (457)
                            ++.+|+|||||.++.+..+.  .....+++..++.++.||+.||.|||++||+||||||+|||++.++.+||+|
T Consensus        83 ~~~~~~~~~~~iv~e~~~~~~~~~~~--~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~d  160 (318)
T d3blha1          83 SPYNRCKGSIYLVFDFCEHDLAGLLS--NVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLAD  160 (318)
T ss_dssp             --------CEEEEEECCCEEHHHHHT--CTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECC
T ss_pred             ccccccCceEEEEEeccCCCccchhh--hcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeee
Confidence                  34689999999766665433  2346799999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCC
Q 012762          232 FDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPL  311 (457)
Q Consensus       232 FG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (457)
                      ||+++.........                                                                  
T Consensus       161 fg~~~~~~~~~~~~------------------------------------------------------------------  174 (318)
T d3blha1         161 FGLARAFSLAKNSQ------------------------------------------------------------------  174 (318)
T ss_dssp             CTTCEECCC-----------------------------------------------------------------------
T ss_pred             cceeeecccccccc------------------------------------------------------------------
Confidence            99986554221110                                                                  


Q ss_pred             ccccccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCCCC---------
Q 012762          312 DVRSMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPKEP---------  381 (457)
Q Consensus       312 ~~~~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~---------  381 (457)
                      .....+.+||+.|+|||++.+. .|+.++|||||||++|||++|+.||.+.........+......++...         
T Consensus       175 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  254 (318)
T d3blha1         175 PNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYEL  254 (318)
T ss_dssp             CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC--
T ss_pred             cccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhh
Confidence            0011234799999999999876 589999999999999999999999998887776666655433322210         


Q ss_pred             ---------------------CCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          382 ---------------------SVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       382 ---------------------~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                                           ..++++++||.+||+.||++|||    ++|+|+||||+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~s----a~elL~Hpff~~  310 (318)
T d3blha1         255 YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID----SDDALNHDFFWS  310 (318)
T ss_dssp             -----CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCC----HHHHHHSGGGSS
T ss_pred             hhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcC----HHHHHcChhhcc
Confidence                                 02456789999999999999999    999999999985

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=7.9e-54  Score=419.62  Aligned_cols=255  Identities=24%  Similarity=0.376  Sum_probs=208.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEc-
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDC-  157 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~-  157 (457)
                      ..++|+++++||+|+||+||+|+++    .+|+.||||++++.      ...++.+|+++|+.+. ||||++++++|.. 
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~----~~~~~vAiK~i~~~------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~  102 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINI----TNNEKVVVKILKPV------KKKKIKREIKILENLRGGPNIITLADIVKDP  102 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSS------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECT
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEEC----CCCCEEEEEEECHH------HHHHHHHHHHHHHhccCCCCCcEEEEEEEec
Confidence            3468999999999999999999986    48899999999753      3456788999999995 9999999999974 


Q ss_pred             -CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCCC
Q 012762          158 -PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDLS  235 (457)
Q Consensus       158 -~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~s  235 (457)
                       ...+|+|||||.+++|..+.     +.+++..++.++.||+.||.|||++|||||||||+||||+.++ .+||+|||++
T Consensus       103 ~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a  177 (328)
T d3bqca1         103 VSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLA  177 (328)
T ss_dssp             TTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGC
T ss_pred             CCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccc
Confidence             45799999999999997642     4699999999999999999999999999999999999998765 6899999998


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      +.......                                                                       .
T Consensus       178 ~~~~~~~~-----------------------------------------------------------------------~  186 (328)
T d3bqca1         178 EFYHPGQE-----------------------------------------------------------------------Y  186 (328)
T ss_dssp             EECCTTCC-----------------------------------------------------------------------C
T ss_pred             eeccCCCc-----------------------------------------------------------------------c
Confidence            65432111                                                                       1


Q ss_pred             ccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHH-HHHHHHhc-------------c------
Q 012762          316 MSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHEL-TLANVVAR-------------A------  374 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~-------------~------  374 (457)
                      ...+||+.|+|||.+.+.. ++.++||||+||++|||++|..||....... ....+...             .      
T Consensus       187 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~  266 (328)
T d3bqca1         187 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR  266 (328)
T ss_dssp             CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGG
T ss_pred             cccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcc
Confidence            1346999999999988764 7999999999999999999999997654332 21111110             0      


Q ss_pred             ----------------cCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCch
Q 012762          375 ----------------LEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWA  424 (457)
Q Consensus       375 ----------------~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~  424 (457)
                                      ........+++++++||.+||..||++|||    ++|+|+||||+++.|.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         267 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLT----AREAMEHPYFYTVVKD  328 (328)
T ss_dssp             GGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTSCCC
T ss_pred             cchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcC----HHHHhcCcccCCCCCC
Confidence                            000111236788999999999999999999    9999999999999984

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-53  Score=421.89  Aligned_cols=254  Identities=26%  Similarity=0.415  Sum_probs=207.7

Q ss_pred             CceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-----
Q 012762           83 DLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-----  157 (457)
Q Consensus        83 ~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-----  157 (457)
                      +|+.+++||+|+||+||+|+++    .+|+.||||++.+...       ...+|+++|++++|+||++++++|..     
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~-------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~   89 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLC----DSGELVAIKKVLQDKR-------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKK   89 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEET----TTCCEEEEEEEECCSS-------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CC
T ss_pred             CcEeeeEEeeCcCeEEEEEEEC----CCCCEEEEEEECccch-------HHHHHHHHHHhcCCCCCCcEEEEEEecCccC
Confidence            6999999999999999999987    4789999999976432       22369999999999999999999853     


Q ss_pred             -CCcEEEEEeecCCCChHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC-CEEEeccCC
Q 012762          158 -PRWSCLLTEFCPGGDLHVLRQR-QPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG-HIMLTDFDL  234 (457)
Q Consensus       158 -~~~~~lV~E~~~~~sL~~~~~~-~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~-~vkl~DFG~  234 (457)
                       ..++|||||||+++.+..+... .....+++..++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+
T Consensus        90 ~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~  169 (350)
T d1q5ka_          90 DEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGS  169 (350)
T ss_dssp             SCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTT
T ss_pred             CceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccc
Confidence             3357999999976654444332 2346799999999999999999999999999999999999999875 899999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++......                                                                       .
T Consensus       170 a~~~~~~~-----------------------------------------------------------------------~  178 (350)
T d1q5ka_         170 AKQLVRGE-----------------------------------------------------------------------P  178 (350)
T ss_dssp             CEECCTTS-----------------------------------------------------------------------C
T ss_pred             hhhccCCc-----------------------------------------------------------------------c
Confidence            86543211                                                                       1


Q ss_pred             cccccCCCCccCchhhcCC-CCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcc-----------------cC
Q 012762          315 SMSFVGTHEYLAPEIISGE-GHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARA-----------------LE  376 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~-~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~-----------------~~  376 (457)
                      ..+.+||+.|+|||.+.+. .|+.++|||||||++|||++|+.||......+.+..++...                 ..
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~  258 (350)
T d1q5ka_         179 NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFK  258 (350)
T ss_dssp             CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCC
T ss_pred             cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhcc
Confidence            1134699999999998764 68999999999999999999999999888777666655321                 11


Q ss_pred             CC----------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCC
Q 012762          377 FP----------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVN  422 (457)
Q Consensus       377 ~~----------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~  422 (457)
                      ++          ....+++++.+||.+||..||++|||    +.|+|+||||+.+.
T Consensus       259 ~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t----a~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         259 FPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT----PLEACAHSFFDELR  310 (350)
T ss_dssp             CCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGGGGG
T ss_pred             ccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhcccc
Confidence            11          12346789999999999999999999    99999999998653

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-53  Score=412.61  Aligned_cols=259  Identities=19%  Similarity=0.249  Sum_probs=211.4

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~  159 (457)
                      ..++|+++++||+|+||+||+|.++.........||+|.++..  ......+++.+|+++|++++|||||++++++.++ 
T Consensus         7 k~~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-   83 (317)
T d1xkka_           7 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA--TSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-   83 (317)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             CHHHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccc--cCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-
Confidence            4468999999999999999999987533333456888888643  2334567788999999999999999999999865 


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGD  239 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~  239 (457)
                      ..+++|||+.+++|..++... ...+++..++.++.||+.||.|||++|||||||||+||||+.++.+||+|||+++...
T Consensus        84 ~~~~v~e~~~~~~l~~~~~~~-~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~  162 (317)
T d1xkka_          84 TVQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  162 (317)
T ss_dssp             SEEEEEECCTTCBHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTT
T ss_pred             CeeEEEEeccCCccccccccc-ccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecc
Confidence            567888999999998877664 4679999999999999999999999999999999999999999999999999987653


Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccccc
Q 012762          240 NSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFV  319 (457)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (457)
                      ......                                                                    ......
T Consensus       163 ~~~~~~--------------------------------------------------------------------~~~~~~  174 (317)
T d1xkka_         163 AEEKEY--------------------------------------------------------------------HAEGGK  174 (317)
T ss_dssp             TTCC----------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------cccccc
Confidence            211100                                                                    011235


Q ss_pred             CCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhC
Q 012762          320 GTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQLLVKD  398 (457)
Q Consensus       320 gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~d  398 (457)
                      ||+.|||||++.+..|+.++|||||||++|||+| |.+||.+.+..+.... +....+.+.+..+++++.+||.+||+.|
T Consensus       175 gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~-i~~~~~~~~p~~~~~~~~~li~~cl~~d  253 (317)
T d1xkka_         175 VPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSI-LEKGERLPQPPICTIDVYMIMVKCWMID  253 (317)
T ss_dssp             CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHH-HHHTCCCCCCTTBCHHHHHHHHHHTCSS
T ss_pred             cCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHcCCCCCCCcccCHHHHHHHHHhCCCC
Confidence            8999999999999999999999999999999998 8999988776665544 4444556666679999999999999999


Q ss_pred             CCCCCCCCcChHHHhcC
Q 012762          399 PTRRMGSKMGATAIKRH  415 (457)
Q Consensus       399 P~~Rps~~~~~~~ll~h  415 (457)
                      |++||+    +.||++|
T Consensus       254 P~~RPs----~~eil~~  266 (317)
T d1xkka_         254 ADSRPK----FRELIIE  266 (317)
T ss_dssp             GGGSCC----HHHHHHH
T ss_pred             hhhCcC----HHHHHHH
Confidence            999999    9999887

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-54  Score=405.75  Aligned_cols=251  Identities=20%  Similarity=0.330  Sum_probs=210.0

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .|.+..++|+++++||+|+||+||+|.+      .|..||||++++.     ...+.+.+|+++|++++||||+++++++
T Consensus         1 ~w~i~~~~~~~~~~lG~G~fg~Vy~~~~------~~~~vAvK~i~~~-----~~~~~~~~E~~~l~~l~HpnIv~~~g~~   69 (262)
T d1byga_           1 GWALNMKELKLLQTIGKGEFGDVMLGDY------RGNKVAVKCIKND-----ATAQAFLAEASVMTQLRHSNLVQLLGVI   69 (262)
T ss_dssp             CCBCCGGGEEEEEEEEECSSCEEEEEEE------TTEEEEEEECCCC-----C--HHHHHTHHHHTTCCCTTBCCEEEEE
T ss_pred             CCccCHHHeEEeEEEecCCCeEEEEEEE------CCeEEEEEEECcH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence            3778899999999999999999999986      3668999999653     3446688999999999999999999998


Q ss_pred             Ec-CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          156 DC-PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       156 ~~-~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                      .+ .+.+||||||+++|+|.+++.......+++..++.++.||+.||.|||+.+|+||||||+|||++.+|.+||+|||+
T Consensus        70 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~  149 (262)
T d1byga_          70 VEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGL  149 (262)
T ss_dssp             CCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC
T ss_pred             EecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeeccccc
Confidence            54 46689999999999999998764334689999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++.......                                                                       
T Consensus       150 s~~~~~~~~-----------------------------------------------------------------------  158 (262)
T d1byga_         150 TKEASSTQD-----------------------------------------------------------------------  158 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceecCCCCc-----------------------------------------------------------------------
Confidence            865432111                                                                       


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccCCCCCCCCChHHHHHHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALEFPKEPSVPGPAKDLIAQ  393 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  393 (457)
                        ...+|..|+|||++.+..++.++|||||||++|||++ |++||......+....+.. ..+.+....+++.+.+||.+
T Consensus       159 --~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~li~~  235 (262)
T d1byga_         159 --TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYEVMKN  235 (262)
T ss_dssp             -----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-TCCCCCCTTCCHHHHHHHHH
T ss_pred             --cccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-CCCCCCCccCCHHHHHHHHH
Confidence              2248899999999999999999999999999999998 7999988877777766554 34555556789999999999


Q ss_pred             HhhhCCCCCCCCCcChHHHhcC
Q 012762          394 LLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       394 ~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      ||..||.+|||    +.+|+++
T Consensus       236 cl~~dP~~Rps----~~~l~~~  253 (262)
T d1byga_         236 CWHLDAAMRPS----FLQLREQ  253 (262)
T ss_dssp             HTCSSGGGSCC----HHHHHHH
T ss_pred             HcccCHhHCcC----HHHHHHH
Confidence            99999999999    8888764

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-53  Score=406.00  Aligned_cols=259  Identities=21%  Similarity=0.326  Sum_probs=215.1

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCCc
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPRW  160 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~~  160 (457)
                      +++|+++++||+|+||+||+|+++    .+++.||||+++... .......++.+|+++|+.++||||+++++++.+...
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~----~~~~~vAvK~i~~~~-~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~   75 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNR----ETHEIVALKRVRLDD-DDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKK   75 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEET----TTCCEEEEEEEESSC-SSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEEC----CCCcEEEEEEEehhh-CChHHHHHHHHHHHHHHhcCcCCEEeeccccccccc
Confidence            368999999999999999999987    488999999997654 234556788899999999999999999999999999


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDN  240 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~  240 (457)
                      .++|||++.+++|..++...  +.+++..++.++.|++.||+|||++|||||||||+|||++.++.+||+|||.++....
T Consensus        76 ~~iv~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~  153 (292)
T d1unla_          76 LTLVFEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             EEEEEECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eeEEeeeccccccccccccc--cccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccC
Confidence            99999999999998877654  7799999999999999999999999999999999999999999999999999865542


Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccC
Q 012762          241 STSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVG  320 (457)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (457)
                      ....                                                                      .....+
T Consensus       154 ~~~~----------------------------------------------------------------------~~~~~~  163 (292)
T d1unla_         154 PVRC----------------------------------------------------------------------YSAEVV  163 (292)
T ss_dssp             CCSC----------------------------------------------------------------------CCSCCS
T ss_pred             CCcc----------------------------------------------------------------------ceeecc
Confidence            2111                                                                      012247


Q ss_pred             CCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCCh-HHHHHHHHhcccCCC--------------------
Q 012762          321 THEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDH-ELTLANVVARALEFP--------------------  378 (457)
Q Consensus       321 t~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~~--------------------  378 (457)
                      ++.|+|||++.+.. ++.++|||||||++|||++|+.||....+ .+.+..+........                    
T Consensus       164 ~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (292)
T d1unla_         164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYP  243 (292)
T ss_dssp             CGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCC
T ss_pred             ccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccccccc
Confidence            88999999998765 69999999999999999999998655443 333433332111110                    


Q ss_pred             -------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCC
Q 012762          379 -------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNG  420 (457)
Q Consensus       379 -------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~  420 (457)
                             ....++..+.+||.+||+.||.+|||    ++|||+||||+.
T Consensus       244 ~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~s----a~e~L~Hp~f~~  288 (292)
T d1unla_         244 ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRIS----AEEALQHPYFSD  288 (292)
T ss_dssp             TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHTTSGGGSS
T ss_pred             ccchhhhccccCCHHHHHHHHHHccCChhHCcC----HHHHhcChhhcC
Confidence                   11345678999999999999999999    999999999985

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-53  Score=414.77  Aligned_cols=259  Identities=22%  Similarity=0.348  Sum_probs=207.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcCC--
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCPR--  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~~--  159 (457)
                      ++|+++++||+|+||+||+|+++    .+|+.||||++.+..  .....+++.+|+++|++|+||||+++++++....  
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~----~~~~~vAvK~i~~~~--~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~   81 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDN----VNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIE   81 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEET----TTCSEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTT
T ss_pred             CCeEEEEEEeeccCeEEEEEEEC----CCCcEEEEEEEehhc--ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeecccc
Confidence            46999999999999999999976    478999999997643  2344567888999999999999999999997653  


Q ss_pred             ---cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          160 ---WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       160 ---~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                         .+||+| ++.+|+|.+++..   ..+++..++.++.||+.||+|||++|||||||||+||||+.++.+||+|||+++
T Consensus        82 ~~~~~~l~~-~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~  157 (345)
T d1pmea_          82 QMKDVYLVT-HLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLAR  157 (345)
T ss_dssp             TCCCEEEEE-ECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             ccceEEEEE-eecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCcee
Confidence               345555 4559999999876   469999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccc
Q 012762          237 KGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSM  316 (457)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (457)
                      .........                                                                   ....
T Consensus       158 ~~~~~~~~~-------------------------------------------------------------------~~~~  170 (345)
T d1pmea_         158 VADPDHDHT-------------------------------------------------------------------GFLT  170 (345)
T ss_dssp             ECCGGGCBC-------------------------------------------------------------------CTTC
T ss_pred             eccCCCccc-------------------------------------------------------------------eeec
Confidence            553221110                                                                   1112


Q ss_pred             cccCCCCccCchhhcC-CCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccC-------------------
Q 012762          317 SFVGTHEYLAPEIISG-EGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALE-------------------  376 (457)
Q Consensus       317 ~~~gt~~y~aPE~l~~-~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~-------------------  376 (457)
                      ..+||+.|+|||++.. ..++.++||||+||++|||++|+.||.+................                   
T Consensus       171 ~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T d1pmea_         171 EYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLL  250 (345)
T ss_dssp             CCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHH
T ss_pred             cccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccc
Confidence            3469999999999854 55799999999999999999999999887765554444322111                   


Q ss_pred             -CCC---------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          377 -FPK---------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       377 -~~~---------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                       .+.         .+.++.++++||.+||+.||++|||    ++|+|+||||+..
T Consensus       251 ~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t----a~e~L~hpf~~~~  301 (345)
T d1pmea_         251 SLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIE----VEQALAHPYLEQY  301 (345)
T ss_dssp             TSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCC----HHHHHTSGGGTTT
T ss_pred             cCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcC----HHHHhcCHhhccC
Confidence             111         1346778999999999999999999    9999999999854

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-52  Score=404.29  Aligned_cols=265  Identities=20%  Similarity=0.273  Sum_probs=217.7

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccCC---CCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCce
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKSS---NNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPT  150 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~---~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~  150 (457)
                      ..|.+..++|+++++||+|+||+||+|++...+.   .++..||||++++..  .......+.+|..++.++ +|||||+
T Consensus         6 ~~~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~~e~~~l~~~~~HpnIv~   83 (299)
T d1fgka_           6 PRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIIN   83 (299)
T ss_dssp             TTTBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CcCcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECccc--ChHHHHHHHHHHHHHHHhcCCCeEEe
Confidence            3477888999999999999999999998764332   344689999997643  233456677898888888 8999999


Q ss_pred             EEEEEEcCCcEEEEEeecCCCChHHHHHhCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCC
Q 012762          151 LYATLDCPRWSCLLTEFCPGGDLHVLRQRQP--------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKP  216 (457)
Q Consensus       151 l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~--------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp  216 (457)
                      +++++.+++..|+|||||++|+|.+++....              ...+++..++.++.||+.||+|||+.|||||||||
T Consensus        84 ~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp  163 (299)
T d1fgka_          84 LLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAA  163 (299)
T ss_dssp             EEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             cccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecc
Confidence            9999999999999999999999999987542              24589999999999999999999999999999999


Q ss_pred             CCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccc
Q 012762          217 ENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKK  296 (457)
Q Consensus       217 ~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (457)
                      +|||++.++.+||+|||+++........                                                    
T Consensus       164 ~NiLl~~~~~~kl~dfg~~~~~~~~~~~----------------------------------------------------  191 (299)
T d1fgka_         164 RNVLVTEDNVMKIADFGLARDIHHIDYY----------------------------------------------------  191 (299)
T ss_dssp             GGEEECTTCCEEECSTTCCCCGGGCCTT----------------------------------------------------
T ss_pred             cceeecCCCCeEeccchhhccccccccc----------------------------------------------------
Confidence            9999999999999999998655322111                                                    


Q ss_pred             cCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhccc
Q 012762          297 KLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARAL  375 (457)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~  375 (457)
                                      .......||+.|+|||++.+..|+.++|||||||++|||++ |.+||.+.........+. ...
T Consensus       192 ----------------~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~-~~~  254 (299)
T d1fgka_         192 ----------------KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLK-EGH  254 (299)
T ss_dssp             ----------------CCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH-TTC
T ss_pred             ----------------cccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHH-cCC
Confidence                            11123468999999999999999999999999999999997 799998877766655544 445


Q ss_pred             CCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          376 EFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       376 ~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      .++.+..+++++++||.+||+.||++|||    +.||++
T Consensus       255 ~~~~p~~~~~~l~~li~~cl~~dP~~Rps----~~eil~  289 (299)
T d1fgka_         255 RMDKPSNCTNELYMMMRDCWHAVPSQRPT----FKQLVE  289 (299)
T ss_dssp             CCCCCSSCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHccCCHhHCcC----HHHHHH
Confidence            66666679999999999999999999999    888876

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-52  Score=405.32  Aligned_cols=263  Identities=20%  Similarity=0.278  Sum_probs=219.9

Q ss_pred             CCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 012762           77 NPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATL  155 (457)
Q Consensus        77 ~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~  155 (457)
                      .++..++|+++++||+|+||+||+|+++.. +..+++.||||+++...  ......++.+|+++|++++||||+++++++
T Consensus         8 ~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           8 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             ccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhc--ChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            345667899999999999999999998743 23467899999997542  234466788999999999999999999999


Q ss_pred             EcCCcEEEEEeecCCCChHHHHHhCC----------------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeec
Q 012762          156 DCPRWSCLLTEFCPGGDLHVLRQRQP----------------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRD  213 (457)
Q Consensus       156 ~~~~~~~lV~E~~~~~sL~~~~~~~~----------------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrD  213 (457)
                      ...+..++||||+++|+|.+++....                      ...+++..++.++.||+.||+|||+++|||||
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrD  165 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  165 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeE
Confidence            99999999999999999999886531                      23488999999999999999999999999999


Q ss_pred             CCCCCeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchh
Q 012762          214 LKPENVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRR  293 (457)
Q Consensus       214 IKp~NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (457)
                      |||+||||+.++.+||+|||+++.......                                                  
T Consensus       166 lKp~NILld~~~~~Kl~DFGls~~~~~~~~--------------------------------------------------  195 (301)
T d1lufa_         166 LATRNCLVGENMVVKIADFGLSRNIYSADY--------------------------------------------------  195 (301)
T ss_dssp             CSGGGEEECGGGCEEECCCSCHHHHTGGGC--------------------------------------------------
T ss_pred             EcccceEECCCCcEEEccchhheeccCCcc--------------------------------------------------
Confidence            999999999999999999999864431110                                                  


Q ss_pred             ccccCCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCC-CCCCCCChHHHHHHHHh
Q 012762          294 RKKKLGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT-TPFKGIDHELTLANVVA  372 (457)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~-~Pf~~~~~~~~~~~~~~  372 (457)
                                        .....+..||+.|+|||++.+..|+.++|||||||++|||++|. +||.+....+....+..
T Consensus       196 ------------------~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~  257 (301)
T d1lufa_         196 ------------------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRD  257 (301)
T ss_dssp             ------------------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHT
T ss_pred             ------------------ccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHc
Confidence                              01112346899999999999999999999999999999999985 68988888877777665


Q ss_pred             cccCCCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          373 RALEFPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       373 ~~~~~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      +. ..+.+..+++++.+||.+||+.||++|||    +.||++
T Consensus       258 ~~-~~~~p~~~~~~~~~li~~cl~~~P~~RPt----~~ev~~  294 (301)
T d1lufa_         258 GN-ILACPENCPLELYNLMRLCWSKLPADRPS----FCSIHR  294 (301)
T ss_dssp             TC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             CC-CCCCCccchHHHHHHHHHHcCCChhHCcC----HHHHHH
Confidence            54 34445578999999999999999999999    888865

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-52  Score=405.38  Aligned_cols=265  Identities=21%  Similarity=0.310  Sum_probs=226.6

Q ss_pred             CCCccCCCceeEEEecccCcceEEEEEEecc-CCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEE
Q 012762           76 NNPLTLSDLRFVHRLGSGDIGSVYLVQLKSK-SSNNGCFFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYA  153 (457)
Q Consensus        76 ~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~-~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~  153 (457)
                      .|++..++|++.++||+|+||+||+|+++.. +..+++.||||++++..  .......+.+|+++++++ +|||||++++
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~~E~~~~~~l~~HpnIv~~~g   94 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA--HLTEREALMSELKVLSYLGNHMNIVNLLG   94 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECccc--CHHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence            4667888999999999999999999997642 34678899999997643  234556788899999999 6999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhCC----------------CCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQP----------------DKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPE  217 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~~----------------~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~  217 (457)
                      ++...+.+|||||||++|+|..++....                ...+++..++.++.||+.||+|||++|||||||||+
T Consensus        95 ~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~  174 (311)
T d1t46a_          95 ACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAAR  174 (311)
T ss_dssp             EECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccc
Confidence            9999999999999999999999987642                236899999999999999999999999999999999


Q ss_pred             CeEEccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhcccc
Q 012762          218 NVLVRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKK  297 (457)
Q Consensus       218 NIll~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (457)
                      |||++.++.+|++|||+++.........                                                    
T Consensus       175 NIl~~~~~~~ki~DfG~~~~~~~~~~~~----------------------------------------------------  202 (311)
T d1t46a_         175 NILLTHGRITKICDFGLARDIKNDSNYV----------------------------------------------------  202 (311)
T ss_dssp             GEEEETTTEEEECCCGGGSCTTSCTTSE----------------------------------------------------
T ss_pred             cccccccCcccccccchheeccCCCcce----------------------------------------------------
Confidence            9999999999999999987654221110                                                    


Q ss_pred             CCCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhc-CCCCCCCCChHHHHHHHHhcccC
Q 012762          298 LGNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFY-GTTPFKGIDHELTLANVVARALE  376 (457)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~ellt-G~~Pf~~~~~~~~~~~~~~~~~~  376 (457)
                                      .....+||+.|+|||++.+..++.++|||||||++|||++ |.+||.+......+.+++....+
T Consensus       203 ----------------~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~  266 (311)
T d1t46a_         203 ----------------VKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR  266 (311)
T ss_dssp             ----------------ECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCC
T ss_pred             ----------------EeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC
Confidence                            1112469999999999999999999999999999999998 77778777776777777777777


Q ss_pred             CCCCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhc
Q 012762          377 FPKEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKR  414 (457)
Q Consensus       377 ~~~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~  414 (457)
                      ......++.++.+||.+||+.||++||+    +++|++
T Consensus       267 ~~~~~~~~~~l~~Li~~cl~~dP~~RPs----~~~il~  300 (311)
T d1t46a_         267 MLSPEHAPAEMYDIMKTCWDADPLKRPT----FKQIVQ  300 (311)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCC----HHHHHH
T ss_pred             CCCcccccHHHHHHHHHHcCCChhHCcC----HHHHHH
Confidence            7777779999999999999999999999    888875

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-52  Score=415.27  Aligned_cols=269  Identities=25%  Similarity=0.315  Sum_probs=207.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc---
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC---  157 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~---  157 (457)
                      +++|+++++||+|+||+||+|+++    .+|+.||||++.+... ......++.+|+.+|+.++|||||+++++|..   
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~----~t~~~vAvK~i~~~~~-~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~   90 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDA----VLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKT   90 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEET----TTTEEEEEEEEESTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCS
T ss_pred             cCCeEEEEEeecCcCeEEEEEEEC----CCCCEEEEEEEChhhc-CHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccc
Confidence            367999999999999999999987    4799999999976533 34455678899999999999999999999964   


Q ss_pred             ---CCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCC
Q 012762          158 ---PRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDL  234 (457)
Q Consensus       158 ---~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~  234 (457)
                         ..++|+|||||.++.+. .+.    ..+++..++.++.||+.||.|||++||+||||||+|||++.++.+|++|||+
T Consensus        91 ~~~~~~~~iv~Ey~~~~l~~-~~~----~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          91 LEEFQDVYLVMELMDANLCQ-VIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             TTTCCEEEEEEECCSEEHHH-HHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             cccCceeEEEEeccchHHHH-hhh----cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhh
Confidence               36789999999655444 332    4589999999999999999999999999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++......                                                                       .
T Consensus       166 ~~~~~~~~-----------------------------------------------------------------------~  174 (355)
T d2b1pa1         166 ARTAGTSF-----------------------------------------------------------------------M  174 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcccccc-----------------------------------------------------------------------c
Confidence            75433111                                                                       1


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCC-----------------
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEF-----------------  377 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~-----------------  377 (457)
                      ....+||+.|+|||++.+..++.++||||+||++|+|++|++||.+.+......+++......                 
T Consensus       175 ~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  254 (355)
T d2b1pa1         175 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVE  254 (355)
T ss_dssp             ------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHH
T ss_pred             cccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhh
Confidence            123469999999999999999999999999999999999999999887666655554322110                 


Q ss_pred             -----CCC------------------CCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCCCchhhhccCCCCC
Q 012762          378 -----PKE------------------PSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGVNWALLRCAKPPFI  434 (457)
Q Consensus       378 -----~~~------------------~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~~~~~~~~~~~~~~  434 (457)
                           ...                  ...+.++++||.+||..||++|||    ++|||+||||+..-+..-....+|.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t----a~elL~Hpw~~~~~~~~~~~~~~~~~  330 (355)
T d2b1pa1         255 NRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRIS----VDDALQHPYINVWYDPAEVEAPPPQI  330 (355)
T ss_dssp             TSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCC----HHHHHTSTTTGGGCCHHHHTCCCC--
T ss_pred             cCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcC----HHHHhcCcccCCCCCcccccCCCCCC
Confidence                 000                  012356899999999999999999    99999999999754433333444444

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-52  Score=404.90  Aligned_cols=256  Identities=21%  Similarity=0.311  Sum_probs=212.6

Q ss_pred             CccCCCceeEEEecccCcceEEEEEEeccCCCCCc--eEEEEEeehhhhhhhhHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 012762           78 PLTLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGC--FFAAKVMDKRELVSRNKESRARIEREILEML-DHPFLPTLYAT  154 (457)
Q Consensus        78 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~--~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l-~H~nIv~l~~~  154 (457)
                      .++.++|++.++||+|+||+||+|+++.    +|.  .||||.+...  ......+.+.+|+++|.++ +|||||+++++
T Consensus         6 ~i~~~~~~~~~~iG~G~fg~Vy~~~~~~----~~~~~~vaiK~~~~~--~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~   79 (309)
T d1fvra_           6 VLDWNDIKFQDVIGEGNFGQVLKARIKK----DGLRMDAAIKRMKEY--ASKDDHRDFAGELEVLCKLGHHPNIINLLGA   79 (309)
T ss_dssp             BCCGGGCEEEEEEECGGGCEEEEEEEEE----TTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEE
T ss_pred             ccCHHHcEEEEEEeeCCCcEEEEEEECC----CCeEEEEEEEEECcc--cChHHHHHHHHHHHHHHhccCCCCEeeEEEE
Confidence            3667899999999999999999999874    454  4677776543  2333456788999999998 79999999999


Q ss_pred             EEcCCcEEEEEeecCCCChHHHHHhC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeE
Q 012762          155 LDCPRWSCLLTEFCPGGDLHVLRQRQ--------------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVL  220 (457)
Q Consensus       155 ~~~~~~~~lV~E~~~~~sL~~~~~~~--------------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIl  220 (457)
                      +.+++.+|||||||++|+|.++++..              ....+++..+..++.||+.||.|||+++||||||||+|||
T Consensus        80 ~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL  159 (309)
T d1fvra_          80 CEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL  159 (309)
T ss_dssp             EEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEE
Confidence            99999999999999999999998753              2467999999999999999999999999999999999999


Q ss_pred             EccCCCEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCC
Q 012762          221 VRSDGHIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGN  300 (457)
Q Consensus       221 l~~~~~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (457)
                      ++.++.+||+|||+++.......                                                         
T Consensus       160 ~~~~~~~kl~DfG~a~~~~~~~~---------------------------------------------------------  182 (309)
T d1fvra_         160 VGENYVAKIADFGLSRGQEVYVK---------------------------------------------------------  182 (309)
T ss_dssp             ECGGGCEEECCTTCEESSCEECC---------------------------------------------------------
T ss_pred             EcCCCceEEcccccccccccccc---------------------------------------------------------
Confidence            99999999999999864431110                                                         


Q ss_pred             CCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCC-CCCCCCChHHHHHHHHhcccCCCC
Q 012762          301 PGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGT-TPFKGIDHELTLANVVARALEFPK  379 (457)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~-~Pf~~~~~~~~~~~~~~~~~~~~~  379 (457)
                                    .....||..|+|||.+.+..|+.++|||||||++|||++|. +||.+.+..+....+.. ..+++.
T Consensus       183 --------------~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~-~~~~~~  247 (309)
T d1fvra_         183 --------------KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ-GYRLEK  247 (309)
T ss_dssp             --------------C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGG-TCCCCC
T ss_pred             --------------ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHh-cCCCCC
Confidence                          11235899999999999999999999999999999999965 67887776666666544 445555


Q ss_pred             CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          380 EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       380 ~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      +..+++++++||.+||+.||++||+    +.+|++|
T Consensus       248 ~~~~~~~~~~li~~cl~~dP~~RPs----~~eil~~  279 (309)
T d1fvra_         248 PLNCDDEVYDLMRQCWREKPYERPS----FAQILVS  279 (309)
T ss_dssp             CTTBCHHHHHHHHHHTCSSGGGSCC----HHHHHHH
T ss_pred             CccCCHHHHHHHHHHcCCChhHCcC----HHHHHHH
Confidence            5679999999999999999999999    9999987

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-52  Score=413.02  Aligned_cols=256  Identities=26%  Similarity=0.350  Sum_probs=210.9

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEcC--
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDCP--  158 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~~--  158 (457)
                      .++|+++++||+|+||+||+|+++    .+|+.||||++.+... .....+++.+|+++|+.++|||||++++++...  
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~----~~~~~vAiK~i~~~~~-~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~   91 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDT----KTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARS   91 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEET----TTTEEEEEEECSCTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSS
T ss_pred             CCCeEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEECchhc-ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccc
Confidence            368999999999999999999986    4899999999976532 334456788899999999999999999999643  


Q ss_pred             ---CcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCC
Q 012762          159 ---RWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLS  235 (457)
Q Consensus       159 ---~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s  235 (457)
                         ...++||+++.||+|.+++..   +++++..++.++.||+.||+|||++||+||||||+|||++.+|.+|++|||++
T Consensus        92 ~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a  168 (348)
T d2gfsa1          92 LEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA  168 (348)
T ss_dssp             TTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC---
T ss_pred             cccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchh
Confidence               234566677779999998865   56999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccc
Q 012762          236 LKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRS  315 (457)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (457)
                      .....                                                                         ..
T Consensus       169 ~~~~~-------------------------------------------------------------------------~~  175 (348)
T d2gfsa1         169 RHTDD-------------------------------------------------------------------------EM  175 (348)
T ss_dssp             -CCTG-------------------------------------------------------------------------GG
T ss_pred             cccCc-------------------------------------------------------------------------cc
Confidence            54321                                                                         11


Q ss_pred             ccccCCCCccCchhhcCCC-CCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHHHhcccCCCC---------------
Q 012762          316 MSFVGTHEYLAPEIISGEG-HGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANVVARALEFPK---------------  379 (457)
Q Consensus       316 ~~~~gt~~y~aPE~l~~~~-~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~---------------  379 (457)
                      .+..||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+.......+.......+.               
T Consensus       176 ~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  255 (348)
T d2gfsa1         176 TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYI  255 (348)
T ss_dssp             SSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHH
T ss_pred             ccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhh
Confidence            1346999999999987765 689999999999999999999999998877666666543322211               


Q ss_pred             --------------CCCCChHHHHHHHHHhhhCCCCCCCCCcChHHHhcCCCCCCC
Q 012762          380 --------------EPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRHQFFNGV  421 (457)
Q Consensus       380 --------------~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~hp~f~~~  421 (457)
                                    ...+++++++||.+||..||++|||    +.|+|+||||+..
T Consensus       256 ~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~t----a~elL~Hp~f~~~  307 (348)
T d2gfsa1         256 QSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRIT----AAQALAHAYFAQY  307 (348)
T ss_dssp             TTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCC----HHHHHTSGGGTTT
T ss_pred             hhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcC----HHHHhcCHhhCCC
Confidence                          1346788999999999999999999    9999999999863

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-52  Score=402.30  Aligned_cols=271  Identities=17%  Similarity=0.217  Sum_probs=226.3

Q ss_pred             CCCCccCCCceeEEEecccCcceEEEEEEeccC-CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 012762           75 NNNPLTLSDLRFVHRLGSGDIGSVYLVQLKSKS-SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYA  153 (457)
Q Consensus        75 ~~~~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~-~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~  153 (457)
                      ..|.+..++|++.++||+|+||+||+|.++... ...++.||||++++..  .......+.+|++++++++|||||++++
T Consensus        13 ~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~--~~~~~~~~~~E~~il~~l~h~nIv~~~~   90 (308)
T d1p4oa_          13 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA--SMRERIEFLNEASVMKEFNCHHVVRLLG   90 (308)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS--CHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             cceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc--ChHHHHHHHHHHHHHHHcCCCCEeeeee
Confidence            457888999999999999999999999986321 2245789999997542  3345567889999999999999999999


Q ss_pred             EEEcCCcEEEEEeecCCCChHHHHHhC--------CCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCC
Q 012762          154 TLDCPRWSCLLTEFCPGGDLHVLRQRQ--------PDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDG  225 (457)
Q Consensus       154 ~~~~~~~~~lV~E~~~~~sL~~~~~~~--------~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~  225 (457)
                      ++..++..+||||||++|+|..++...        ....+++..+..++.||+.||.|||+++|+||||||+||||+.++
T Consensus        91 ~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~  170 (308)
T d1p4oa_          91 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  170 (308)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCc
Confidence            999999999999999999998887642        123578899999999999999999999999999999999999999


Q ss_pred             CEEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCc
Q 012762          226 HIMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPE  305 (457)
Q Consensus       226 ~vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (457)
                      ++||+|||+++........                                                             
T Consensus       171 ~~Kl~DFGla~~~~~~~~~-------------------------------------------------------------  189 (308)
T d1p4oa_         171 TVKIGDFGMTRDIYETDYY-------------------------------------------------------------  189 (308)
T ss_dssp             CEEECCTTCCCGGGGGGCE-------------------------------------------------------------
T ss_pred             eEEEeecccceeccCCcce-------------------------------------------------------------
Confidence            9999999998654321110                                                             


Q ss_pred             ccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcC-CCCCCCCChHHHHHHHHhcccCCCCCCCCC
Q 012762          306 IVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYG-TTPFKGIDHELTLANVVARALEFPKEPSVP  384 (457)
Q Consensus       306 ~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (457)
                             .......||+.|+|||.+.+..++.++|||||||++|||++| .+||.+.+..+.+..+..+. ..+....++
T Consensus       190 -------~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~-~~~~p~~~~  261 (308)
T d1p4oa_         190 -------RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGG-LLDKPDNCP  261 (308)
T ss_dssp             -------EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTC-CCCCCTTCC
T ss_pred             -------eeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCC-CCCCcccch
Confidence                   111234689999999999999999999999999999999998 58888888888777766544 444556789


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCCcChHHHhc------CCCCCC
Q 012762          385 GPAKDLIAQLLVKDPTRRMGSKMGATAIKR------HQFFNG  420 (457)
Q Consensus       385 ~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~------hp~f~~  420 (457)
                      ..+.+||.+||+.||++||+    +.+|++      +|+|+.
T Consensus       262 ~~l~~li~~cl~~~P~~RPs----~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         262 DMLFELMRMCWQYNPKMRPS----FLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             HHHHHHHHHHTCSSGGGSCC----HHHHHHHHGGGSCTTHHH
T ss_pred             HHHHHHHHHHcCCChhHCcC----HHHHHHHHHHhcCCCCcC
Confidence            99999999999999999999    888876      666653

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-50  Score=391.63  Aligned_cols=256  Identities=15%  Similarity=0.205  Sum_probs=204.8

Q ss_pred             eeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCCceEEEEEEc-CCcEEE
Q 012762           85 RFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFLPTLYATLDC-PRWSCL  163 (457)
Q Consensus        85 ~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~l~~~~~~-~~~~~l  163 (457)
                      .+.++||+|+||+||+|++.... .....||||++++.  .......++.+|+++|++++||||+++++++.. ++..++
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~-~~~~~vAvK~~~~~--~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~l  106 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDND-GKKIHCAVKSLNRI--TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  106 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC-----CEEEEEEEECCC--CCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCC-CEEEEEEEEEECcc--cCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEE
Confidence            34689999999999999986422 13446899998643  334556789999999999999999999999764 568899


Q ss_pred             EEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEEEeccCCCcCCCCCCc
Q 012762          164 LTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKGDNSTS  243 (457)
Q Consensus       164 V~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~~~~~~~~  243 (457)
                      |||||++++|.+++... ...+++..+..++.|++.||.|||+.+|+||||||+||||+.++.+||+|||+++.......
T Consensus       107 v~E~~~~g~l~~~~~~~-~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~  185 (311)
T d1r0pa_         107 VLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF  185 (311)
T ss_dssp             EEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC
T ss_pred             EEEEeecCchhhhhccc-cccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhcccccc
Confidence            99999999999987754 35678888999999999999999999999999999999999999999999999876543211


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccccccccCCCC
Q 012762          244 TAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMSFVGTHE  323 (457)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  323 (457)
                      ...                                                                  .......||+.
T Consensus       186 ~~~------------------------------------------------------------------~~~~~~~gt~~  199 (311)
T d1r0pa_         186 DSV------------------------------------------------------------------HNKTGAKLPVK  199 (311)
T ss_dssp             CCT------------------------------------------------------------------TCTTCSSCCGG
T ss_pred             ccc------------------------------------------------------------------eeccccccccc
Confidence            100                                                                  00112358999


Q ss_pred             ccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH-HHHHHHHhcccCCCCCCCCChHHHHHHHHHhhhCCCCC
Q 012762          324 YLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE-LTLANVVARALEFPKEPSVPGPAKDLIAQLLVKDPTRR  402 (457)
Q Consensus       324 y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~dP~~R  402 (457)
                      |+|||++.+..++.++|||||||++|||++|..||...... +....+.. ..+.+.+..+++++.+||.+||+.||++|
T Consensus       200 y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~-g~~~~~p~~~~~~l~~li~~cl~~dP~~R  278 (311)
T d1r0pa_         200 WMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQ-GRRLLQPEYCPDPLYEVMLKCWHPKAEMR  278 (311)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             ccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-CCCCCCcccCcHHHHHHHHHHcCCCHhHC
Confidence            99999999999999999999999999999987777654433 33444433 34555556789999999999999999999


Q ss_pred             CCCCcChHHHhcC
Q 012762          403 MGSKMGATAIKRH  415 (457)
Q Consensus       403 ps~~~~~~~ll~h  415 (457)
                      |+    +.||++|
T Consensus       279 Ps----~~ei~~~  287 (311)
T d1r0pa_         279 PS----FSELVSR  287 (311)
T ss_dssp             CC----HHHHHHH
T ss_pred             cC----HHHHHHH
Confidence            99    9999887

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-49  Score=382.75  Aligned_cols=272  Identities=19%  Similarity=0.305  Sum_probs=206.2

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCC-CceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPF-LPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~l~~~~~~~~~  160 (457)
                      ++|++.++||+|+||+||+|+++    .+|+.||||++....     ...++..|+++++.++|+| |+.+.+++...+.
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~-----~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~   77 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDI----AAGEEVAIKLECVKT-----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDY   77 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEET----TTTEEEEEEEEESCT-----TSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEEC----CCCCEEEEEEEchhc-----cCHHHHHHHHHHHHccCCCcccEEEEEEecCCE
Confidence            46999999999999999999986    478999999987542     2234677999999997766 5556667788888


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc---CCCEEEeccCCCcC
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS---DGHIMLTDFDLSLK  237 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~---~~~vkl~DFG~s~~  237 (457)
                      .++||||+ +++|...+... ...+++..+..++.||+.||+|||++|||||||||+|||++.   +..+||+|||+++.
T Consensus        78 ~~ivme~~-~~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          78 NVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             EEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             EEEEEEEc-CCchhhhhhhc-cCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCccee
Confidence            99999999 67776665543 367999999999999999999999999999999999999864   45799999999976


Q ss_pred             CCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCcccccc
Q 012762          238 GDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVRSMS  317 (457)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (457)
                      ..........                                                               ......+
T Consensus       156 ~~~~~~~~~~---------------------------------------------------------------~~~~~~~  172 (299)
T d1ckia_         156 YRDARTHQHI---------------------------------------------------------------PYRENKN  172 (299)
T ss_dssp             CBCTTTCCBC---------------------------------------------------------------CCCBCCS
T ss_pred             ccccccccce---------------------------------------------------------------eccccCC
Confidence            6432221100                                                               0111224


Q ss_pred             ccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChHHHHHHH---HhcccCCC---CCCCCChHHHHHH
Q 012762          318 FVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHELTLANV---VARALEFP---KEPSVPGPAKDLI  391 (457)
Q Consensus       318 ~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~ll  391 (457)
                      ++||+.|||||++.+..++.++|||||||++|||++|+.||...........+   .......+   ....+|+++.+||
T Consensus       173 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li  252 (299)
T d1ckia_         173 LTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYL  252 (299)
T ss_dssp             CCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHH
T ss_pred             cCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHH
Confidence            57999999999999999999999999999999999999999876544332222   12222222   1245889999999


Q ss_pred             HHHhhhCCCCCCCCCcChHHHhcCCCC-------CCCCchhhhc
Q 012762          392 AQLLVKDPTRRMGSKMGATAIKRHQFF-------NGVNWALLRC  428 (457)
Q Consensus       392 ~~~L~~dP~~Rps~~~~~~~ll~hp~f-------~~~~~~~~~~  428 (457)
                      .+||+.||++||++.. +.++|+|+|.       ..+||..++.
T Consensus       253 ~~cl~~~p~~RP~~~~-i~~~l~~~~~~~~~~~~~~~Dw~~~~~  295 (299)
T d1ckia_         253 NFCRSLRFDDKPDYSY-LRQLFRNLFHRQGFSYDYVFDWNMLKF  295 (299)
T ss_dssp             HHHHHSCTTCCCCHHH-HHHHHHHHHHHHTCCCSCCCHHHHGGG
T ss_pred             HHHccCChhHCcCHHH-HHHHHHHHHHHcCCCCCCCcCchhhcC
Confidence            9999999999999322 2355666543       3368888764

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=7.6e-49  Score=377.87  Aligned_cols=251  Identities=17%  Similarity=0.244  Sum_probs=202.4

Q ss_pred             CCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCC-CCCceEEEEEEcCC
Q 012762           81 LSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDH-PFLPTLYATLDCPR  159 (457)
Q Consensus        81 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H-~nIv~l~~~~~~~~  159 (457)
                      -++|+++++||+|+||+||+|+++    .+|+.||||++....     ....+++|+++++.|.| +||+.+++++..+.
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~----~~~~~vAvK~~~~~~-----~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~   74 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNL----LNNQQVAIKFEPRRS-----DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGL   74 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEET----TTTEEEEEEEEECCT-----TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETT
T ss_pred             CCceEEEEEEecCCCeEEEEEEEC----CCCCEEEEEEEcccc-----CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCC
Confidence            358999999999999999999987    478999999986542     22346678999999965 89999999999999


Q ss_pred             cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEcc-----CCCEEEeccCC
Q 012762          160 WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRS-----DGHIMLTDFDL  234 (457)
Q Consensus       160 ~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~-----~~~vkl~DFG~  234 (457)
                      ..|+||||+ +++|..++... ...+++..+..++.|++.||+|||++|||||||||+|||++.     ++.+||+|||+
T Consensus        75 ~~~~vme~~-~~~l~~~~~~~-~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~  152 (293)
T d1csna_          75 HNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM  152 (293)
T ss_dssp             EEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTT
T ss_pred             ccEEEEEec-CCCHHHHHHhh-ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccce
Confidence            999999999 89998888664 357999999999999999999999999999999999999974     57899999999


Q ss_pred             CcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCcccccCCccc
Q 012762          235 SLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIVAEPLDVR  314 (457)
Q Consensus       235 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (457)
                      ++...........                                                               ....
T Consensus       153 a~~~~~~~~~~~~---------------------------------------------------------------~~~~  169 (293)
T d1csna_         153 VKFYRDPVTKQHI---------------------------------------------------------------PYRE  169 (293)
T ss_dssp             CEESBCTTTCCBC---------------------------------------------------------------CCCC
T ss_pred             eEEcccCccccce---------------------------------------------------------------eecc
Confidence            9765432211100                                                               0011


Q ss_pred             cccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCCh---HHHHHHHHhcccCCC---CCCCCChHHH
Q 012762          315 SMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDH---ELTLANVVARALEFP---KEPSVPGPAK  388 (457)
Q Consensus       315 ~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~  388 (457)
                      ...++||+.|||||++.+..++.++|||||||++|||++|..||.+...   ......+.......+   ....+|+++.
T Consensus       170 ~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~  249 (293)
T d1csna_         170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFY  249 (293)
T ss_dssp             CCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHH
T ss_pred             cCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHH
Confidence            2245799999999999999999999999999999999999999986543   223333332222221   1245889999


Q ss_pred             HHHHHHhhhCCCCCCCC
Q 012762          389 DLIAQLLVKDPTRRMGS  405 (457)
Q Consensus       389 ~ll~~~L~~dP~~Rps~  405 (457)
                      +++..|+..+|++||+.
T Consensus       250 ~ii~~~~~~~~~~rP~y  266 (293)
T d1csna_         250 KYMHYARNLAFDATPDY  266 (293)
T ss_dssp             HHHHHHHHCCTTCCCCH
T ss_pred             HHHHHHhcCCcccCcCH
Confidence            99999999999999983

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=378.41  Aligned_cols=249  Identities=23%  Similarity=0.281  Sum_probs=189.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHH--HHHHcCCCCCceEEEEEEcCC
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIERE--ILEMLDHPFLPTLYATLDCPR  159 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~--il~~l~H~nIv~l~~~~~~~~  159 (457)
                      .+|.+.++||+|+||+||+|++      +|+.||||+++...      ...+.+|.+  .+.+++|||||++++++...+
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~------~g~~vAvK~~~~~~------~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~   70 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW------RGEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDN   70 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE------TTEEEEEEEECGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE------CCEEEEEEEECccc------hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC
Confidence            4799999999999999999985      57899999996542      223333444  455689999999999997654


Q ss_pred             ----cEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH--------cCceeecCCCCCeEEccCCCE
Q 012762          160 ----WSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM--------MGIIYRDLKPENVLVRSDGHI  227 (457)
Q Consensus       160 ----~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~--------~~iiHrDIKp~NIll~~~~~v  227 (457)
                          .+|||||||++|+|..+++.   ..+++..+..++.|++.||.|||+        +|||||||||+||||+.++.+
T Consensus        71 ~~~~~~~lv~Ey~~~g~L~~~l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~  147 (303)
T d1vjya_          71 GTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC  147 (303)
T ss_dssp             SSSEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCE
T ss_pred             CcceEEEEEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCe
Confidence                57999999999999999987   469999999999999999999996        599999999999999999999


Q ss_pred             EEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccCCCCCCCccc
Q 012762          228 MLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKLGNPGTPEIV  307 (457)
Q Consensus       228 kl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (457)
                      ||+|||+++.........                                                              
T Consensus       148 Kl~DFGl~~~~~~~~~~~--------------------------------------------------------------  165 (303)
T d1vjya_         148 CIADLGLAVRHDSATDTI--------------------------------------------------------------  165 (303)
T ss_dssp             EECCCTTCEEEETTTTEE--------------------------------------------------------------
T ss_pred             EEEecCccccccCCCcce--------------------------------------------------------------
Confidence            999999986553221110                                                              


Q ss_pred             ccCCccccccccCCCCccCchhhcCCC------CCccchhhhhhHHHHHHhcCCCCCCCCC---------------hHHH
Q 012762          308 AEPLDVRSMSFVGTHEYLAPEIISGEG------HGNAVDWWTLGIFIFELFYGTTPFKGID---------------HELT  366 (457)
Q Consensus       308 ~~~~~~~~~~~~gt~~y~aPE~l~~~~------~~~~sDiwSlG~il~elltG~~Pf~~~~---------------~~~~  366 (457)
                          .......+||+.|||||++.+..      ++.++|||||||+||||++|..||....               ....
T Consensus       166 ----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (303)
T d1vjya_         166 ----DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM  241 (303)
T ss_dssp             ----CC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHH
T ss_pred             ----eccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHH
Confidence                01112347999999999997653      5678999999999999999988774321               1122


Q ss_pred             HHHHHhcccCCCCCCC-----CChHHHHHHHHHhhhCCCCCCCCCcChHHHhcC
Q 012762          367 LANVVARALEFPKEPS-----VPGPAKDLIAQLLVKDPTRRMGSKMGATAIKRH  415 (457)
Q Consensus       367 ~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~L~~dP~~Rps~~~~~~~ll~h  415 (457)
                      .........+.+....     ....+.+|+.+||+.||++|||    +.||+++
T Consensus       242 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps----~~ei~~~  291 (303)
T d1vjya_         242 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLT----ALRIKKT  291 (303)
T ss_dssp             HHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCC----HHHHHHH
T ss_pred             HHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcC----HHHHHHH
Confidence            2222222322221111     1235889999999999999999    8888763

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-46  Score=369.29  Aligned_cols=259  Identities=22%  Similarity=0.340  Sum_probs=196.9

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-----------CCCC
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-----------HPFL  148 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-----------H~nI  148 (457)
                      .-++|+++++||+|+||+||+|+++    .+|+.||||++++...    ..+.+.+|+++|+.++           |+||
T Consensus        11 ~~~rY~i~~~LG~G~fg~Vy~~~~~----~~g~~vAvKvi~~~~~----~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~i   82 (362)
T d1q8ya_          11 KDARYILVRKLGWGHFSTVWLAKDM----VNNTHVAMKIVRGDKV----YTEAAEDEIKLLQRVNDADNTKEDSMGANHI   82 (362)
T ss_dssp             TTTTEEEEEEEEECSSEEEEEEEET----TTTEEEEEEEECSCHH----HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTB
T ss_pred             cCCcEEEEEEEeeCCCeEEEEEEEC----CCCCEEEEEEEecccc----chHHHHHHHHHHHHhcchhhhhhhhcCcCce
Confidence            3357999999999999999999987    4899999999986543    3345677888888764           5789


Q ss_pred             ceEEEEEEc--CCcEEEEEeecCCCC-hHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCceeecCCCCCeEEccC
Q 012762          149 PTLYATLDC--PRWSCLLTEFCPGGD-LHVLRQRQPDKRFHESAVRFYASEVVVALEFLHM-MGIIYRDLKPENVLVRSD  224 (457)
Q Consensus       149 v~l~~~~~~--~~~~~lV~E~~~~~s-L~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~-~~iiHrDIKp~NIll~~~  224 (457)
                      +++++++..  ....+++|+++..+. ............+++..++.++.||+.||+|||+ .||+||||||+||||+.+
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~  162 (362)
T d1q8ya_          83 LKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIV  162 (362)
T ss_dssp             CCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEE
T ss_pred             EEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeecc
Confidence            999988754  345667777664443 3444555566789999999999999999999997 899999999999999876


Q ss_pred             CC------EEEeccCCCcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccccCcchhccccC
Q 012762          225 GH------IMLTDFDLSLKGDNSTSTAQLVSDQSPPTGDQQPNDCAVDQPPFGNSSCIIPNCIVPAVSCLHPKRRRKKKL  298 (457)
Q Consensus       225 ~~------vkl~DFG~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (457)
                      +.      ++++|||.+......                                                         
T Consensus       163 ~~~~~~~~~kl~dfg~s~~~~~~---------------------------------------------------------  185 (362)
T d1q8ya_         163 DSPENLIQIKIADLGNACWYDEH---------------------------------------------------------  185 (362)
T ss_dssp             ETTTTEEEEEECCCTTCEETTBC---------------------------------------------------------
T ss_pred             CcccccceeeEeecccccccccc---------------------------------------------------------
Confidence            54      999999997543211                                                         


Q ss_pred             CCCCCCcccccCCccccccccCCCCccCchhhcCCCCCccchhhhhhHHHHHHhcCCCCCCCCChH------HHHHHHHh
Q 012762          299 GNPGTPEIVAEPLDVRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGIFIFELFYGTTPFKGIDHE------LTLANVVA  372 (457)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDiwSlG~il~elltG~~Pf~~~~~~------~~~~~~~~  372 (457)
                                      ....+||+.|+|||++.+..|+.++||||+||++++|++|+.||......      ..+...+.
T Consensus       186 ----------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~  249 (362)
T d1q8ya_         186 ----------------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIE  249 (362)
T ss_dssp             ----------------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHH
T ss_pred             ----------------cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHH
Confidence                            11346999999999999999999999999999999999999999754321      11111111


Q ss_pred             cccC------------------------CC----------------CCCCCChHHHHHHHHHhhhCCCCCCCCCcChHHH
Q 012762          373 RALE------------------------FP----------------KEPSVPGPAKDLIAQLLVKDPTRRMGSKMGATAI  412 (457)
Q Consensus       373 ~~~~------------------------~~----------------~~~~~~~~~~~ll~~~L~~dP~~Rps~~~~~~~l  412 (457)
                      ....                        ..                .....++++++||.+||.+||.+|||    ++|+
T Consensus       250 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpt----a~e~  325 (362)
T d1q8ya_         250 LLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD----AGGL  325 (362)
T ss_dssp             HHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC----HHHH
T ss_pred             HhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcC----HHHH
Confidence            0000                        00                00112457899999999999999999    9999


Q ss_pred             hcCCCCCCCCc
Q 012762          413 KRHQFFNGVNW  423 (457)
Q Consensus       413 l~hp~f~~~~~  423 (457)
                      |+||||+.+.+
T Consensus       326 L~Hp~f~~~~~  336 (362)
T d1q8ya_         326 VNHPWLKDTLG  336 (362)
T ss_dssp             HTCGGGTTCTT
T ss_pred             hcCcccCCCCC
Confidence            99999996543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=6e-27  Score=209.81  Aligned_cols=137  Identities=21%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             ceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhh---------------hhhHHHHHHHHHHHHHHcCCCCC
Q 012762           84 LRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELV---------------SRNKESRARIEREILEMLDHPFL  148 (457)
Q Consensus        84 ~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~---------------~~~~~~~~~~E~~il~~l~H~nI  148 (457)
                      +.+.++||+|+||+||+|++.     +|+.||||+++.....               ..........|..+|.++.|.++
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-----~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v   76 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-----KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAV   76 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-----TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             chhCCEeeeCcceEEEEEECC-----CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence            467899999999999999874     6889999987532111               01122344568888999999999


Q ss_pred             ceEEEEEEcCCcEEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHcCceeecCCCCCeEEccCCCEE
Q 012762          149 PTLYATLDCPRWSCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLHMMGIIYRDLKPENVLVRSDGHIM  228 (457)
Q Consensus       149 v~l~~~~~~~~~~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH~~~iiHrDIKp~NIll~~~~~vk  228 (457)
                      +..+++..    .++||||+++..+..         +++..+..++.||+.+|.|||++||+||||||+|||++.++ ++
T Consensus        77 ~~~~~~~~----~~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~-~~  142 (191)
T d1zara2          77 PKVYAWEG----NAVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IW  142 (191)
T ss_dssp             CCEEEEET----TEEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTE-EE
T ss_pred             ceEEEecC----CEEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCC-EE
Confidence            99887642    379999998766532         44455678999999999999999999999999999998654 89


Q ss_pred             EeccCCCcCCC
Q 012762          229 LTDFDLSLKGD  239 (457)
Q Consensus       229 l~DFG~s~~~~  239 (457)
                      |+|||+++...
T Consensus       143 liDFG~a~~~~  153 (191)
T d1zara2         143 IIDFPQSVEVG  153 (191)
T ss_dssp             ECCCTTCEETT
T ss_pred             EEECCCcccCC
Confidence            99999986543

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.66  E-value=5.9e-08  Score=88.68  Aligned_cols=139  Identities=16%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             CCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEcCCc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDCPRW  160 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~~~~  160 (457)
                      +.|++.+..+.|+.+.||+...      .+..+++|+.......   ....+.+|..+|+.|. +--+.+++.+...++.
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~------~~~~~vlk~~~~~~~~---~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~   84 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVG------ENENLYLKMTDSRYKG---TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGW   84 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEEC------SSCEEEEEEECGGGTT---STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTE
T ss_pred             hceEEEEcCCCCCCCcEEEEEe------CCCeEEEEEcCCCccc---chhhHHHHHHHHHHHhccCCCCcEEEEEecCCc
Confidence            4577777666566678998762      4556788887654321   2234566888888874 5457888999888899


Q ss_pred             EEEEEeecCCCChHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-----------------------------------
Q 012762          161 SCLLTEFCPGGDLHVLRQRQPDKRFHESAVRFYASEVVVALEFLH-----------------------------------  205 (457)
Q Consensus       161 ~~lV~E~~~~~sL~~~~~~~~~~~~~~~~~~~i~~qi~~~L~yLH-----------------------------------  205 (457)
                      .|+||++++|..+.......    ..   ...++.++...|..||                                   
T Consensus        85 ~~lv~~~l~G~~~~~~~~~~----~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (263)
T d1j7la_          85 SNLLMSEADGVLCSEEYEDE----QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCEN  157 (263)
T ss_dssp             EEEEEECCSSEEHHHHTTTC----SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGG
T ss_pred             eEEEEEeccccccccccccc----cc---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhc
Confidence            99999999988774322110    01   1112223333333333                                   


Q ss_pred             ------------------H------cCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          206 ------------------M------MGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       206 ------------------~------~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                                        .      ..++|+|+.|.|||++.++.+.|+||+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         158 WEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             GSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                              1      127999999999999877666799999864

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.20  E-value=3.7e-06  Score=75.88  Aligned_cols=74  Identities=16%  Similarity=0.077  Sum_probs=52.8

Q ss_pred             EecccCc-ceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC--CCCCceEEEEEEcCCcEEEEE
Q 012762           89 RLGSGDI-GSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD--HPFLPTLYATLDCPRWSCLLT  165 (457)
Q Consensus        89 ~LG~G~f-g~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~--H~nIv~l~~~~~~~~~~~lV~  165 (457)
                      .+..|.. +.||+....     .+..+++|......      ...+..|.+.|+.|.  +-.+.+++.+..+++..++||
T Consensus        17 ~~~~G~s~~~v~r~~~~-----~~~~~vlK~~~~~~------~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~   85 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQ-----GRPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   85 (255)
T ss_dssp             ECSCTTSSCEEEEEECT-----TSCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             EcCCcccCCeEEEEEeC-----CCCEEEEEeCCccC------HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEE
Confidence            4455554 688988743     56678899875432      223566888888773  334678888888888999999


Q ss_pred             eecCCCCh
Q 012762          166 EFCPGGDL  173 (457)
Q Consensus       166 E~~~~~sL  173 (457)
                      ++++|.++
T Consensus        86 ~~i~G~~~   93 (255)
T d1nd4a_          86 GEVPGQDL   93 (255)
T ss_dssp             ECCSSEET
T ss_pred             Eeeecccc
Confidence            99988765

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=5.5e-06  Score=80.14  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             EEEecccCcceEEEEEEeccCCCCCceEEEEEeehhh-hh---hhhHHHHHHHHHHHHHHcC-C--CCCceEEEEEEcCC
Q 012762           87 VHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRE-LV---SRNKESRARIEREILEMLD-H--PFLPTLYATLDCPR  159 (457)
Q Consensus        87 ~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~-~~---~~~~~~~~~~E~~il~~l~-H--~nIv~l~~~~~~~~  159 (457)
                      .+.||.|....||++...    ..++.|+||.-.... ..   ......+...|.++|+.+. +  ..+++++.+  +.+
T Consensus        31 ~~eig~G~~N~vfrV~~~----~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~  104 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQ----EHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTE  104 (392)
T ss_dssp             EEECCSSSSEEEEEEEC--------CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETT
T ss_pred             EEEeCCCceEeEEEEEeC----CCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCC
Confidence            567899999999998764    356789999654321 11   1123345667888888773 3  346666655  344


Q ss_pred             cEEEEEeecCCCCh
Q 012762          160 WSCLLTEFCPGGDL  173 (457)
Q Consensus       160 ~~~lV~E~~~~~sL  173 (457)
                      ..++|||++.+..+
T Consensus       105 ~~~lvmE~L~~~~~  118 (392)
T d2pula1         105 MAVTVMEDLSHLKI  118 (392)
T ss_dssp             TTEEEECCCTTSEE
T ss_pred             CCEEEEeccCCccc
Confidence            56799999976543

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.42  E-value=0.00021  Score=68.68  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             CCceeEEEecccCcceEEEEEEeccC---CCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcC-CCCCceEEEEEEc
Q 012762           82 SDLRFVHRLGSGDIGSVYLVQLKSKS---SNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLD-HPFLPTLYATLDC  157 (457)
Q Consensus        82 ~~~~~~~~LG~G~fg~Vy~a~~~~~~---~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~-H~nIv~l~~~~~~  157 (457)
                      +++++ +.|+.|-.-.+|++......   ......|.+++....    .... ...+|.++++.+. +.-..++++++.+
T Consensus        43 ~~l~v-~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~----~~~i-dr~~E~~i~~~ls~~gl~Pkll~~~~~  116 (395)
T d1nw1a_          43 EHLRI-SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP----ETES-HLVAESVIFTLLSERHLGPKLYGIFSG  116 (395)
T ss_dssp             GGEEE-EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC----CCHH-HHHHHHHHHHHHHHTTSSSCEEEEETT
T ss_pred             cceEE-EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCc----chhh-HHHHHHHHHHHHHhCCCCCeEEEEcCC
Confidence            34544 57888999999999865321   123456788887532    1222 3446888988884 4335688888753


Q ss_pred             CCcEEEEEeecCCCCh
Q 012762          158 PRWSCLLTEFCPGGDL  173 (457)
Q Consensus       158 ~~~~~lV~E~~~~~sL  173 (457)
                          .+||||++|..|
T Consensus       117 ----g~I~efi~g~~l  128 (395)
T d1nw1a_         117 ----GRLEEYIPSRPL  128 (395)
T ss_dssp             ----EEEECCCCEEEC
T ss_pred             ----ceEEEEeccccC
Confidence                589999987654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00026  Score=66.01  Aligned_cols=70  Identities=13%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             cceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC--ceEE-----EEEEcCCcEEEEEee
Q 012762           95 IGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL--PTLY-----ATLDCPRWSCLLTEF  167 (457)
Q Consensus        95 fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI--v~l~-----~~~~~~~~~~lV~E~  167 (457)
                      --.||+++..     +|..|++|+.+....    ...++..|.+.|..|...+|  +..+     ..+..++..+.++++
T Consensus        35 EN~vy~v~~~-----dg~~~VlK~~rp~~~----s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~  105 (325)
T d1zyla1          35 ENRVYQFQDE-----DRRRFVVKFYRPERW----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPS  105 (325)
T ss_dssp             SSEEEEECCT-----TCCCEEEEEECTTTS----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEEC
T ss_pred             cceeEEEEcC-----CCCEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEee
Confidence            3689988764     788899999875432    23446668888887743222  1111     123445678899999


Q ss_pred             cCCCCh
Q 012762          168 CPGGDL  173 (457)
Q Consensus       168 ~~~~sL  173 (457)
                      +.|..+
T Consensus       106 ~~G~~~  111 (325)
T d1zyla1         106 VGGRQF  111 (325)
T ss_dssp             CCCEEC
T ss_pred             cCCcCC
Confidence            976443

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.03  E-value=0.0011  Score=61.24  Aligned_cols=146  Identities=17%  Similarity=0.122  Sum_probs=76.0

Q ss_pred             cCCCceeEEEecccCcceEEEEEEeccCCCCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCCCC--ceEEE----
Q 012762           80 TLSDLRFVHRLGSGDIGSVYLVQLKSKSSNNGCFFAAKVMDKRELVSRNKESRARIEREILEMLDHPFL--PTLYA----  153 (457)
Q Consensus        80 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~l~H~nI--v~l~~----  153 (457)
                      .++...-.+.|..|.--+.|+...      ++..|++|+..+..     ....+..|.++|..|...++  ...+.    
T Consensus        16 ~lg~~~~~~~i~~G~~N~ny~v~t------~~g~yVLri~~~~~-----~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g   84 (316)
T d2ppqa1          16 DVGSLTSYKGIAEGVENSNFLLHT------TKDPLILTLYEKRV-----EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDG   84 (316)
T ss_dssp             CCCCEEEEEEECC---EEEEEEEE------SSCCEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTC
T ss_pred             CCCCceEeecCCCCcccCeEEEEE------CCCcEEEEEcCCCC-----CHHHHHHHHHHHHhhhhccccccccceecCC
Confidence            345566667788888889998874      23358999986532     12334457777777743222  11111    


Q ss_pred             --EEEcCCcEEEEEeecCCCChHH-----------HH---Hh-CC------CCCCCHH------------------HHHH
Q 012762          154 --TLDCPRWSCLLTEFCPGGDLHV-----------LR---QR-QP------DKRFHES------------------AVRF  192 (457)
Q Consensus       154 --~~~~~~~~~lV~E~~~~~sL~~-----------~~---~~-~~------~~~~~~~------------------~~~~  192 (457)
                        +....+..+.++.++.|.....           ++   +. ..      .......                  ....
T Consensus        85 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (316)
T d2ppqa1          85 ELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLRE  164 (316)
T ss_dssp             CSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHH
T ss_pred             CcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHHH
Confidence              1122344566677665543310           00   00 00      0000110                  1111


Q ss_pred             HHHHHHHHHHHHH----HcCceeecCCCCCeEEccCCCEEEeccCCCc
Q 012762          193 YASEVVVALEFLH----MMGIIYRDLKPENVLVRSDGHIMLTDFDLSL  236 (457)
Q Consensus       193 i~~qi~~~L~yLH----~~~iiHrDIKp~NIll~~~~~vkl~DFG~s~  236 (457)
                      .+..+...+.-.+    ..|+||+|+.++||+++.+...-|+||+.+.
T Consensus       165 ~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         165 EIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             HHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence            1222222222222    2479999999999999988777899999874