Citrus Sinensis ID: 012778

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
MSNSQTPQDSSAFKRQLPFSAMKPPFLAPGGDYHRFAAEPHRRPDQEAEAIVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTVSTPQPQTPPSNTAEAPPAAANTGR
cccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHEEEEEcHHHcccHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccEEEEEEcccccEEEEcccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHccccccccEEEEEEcccccEEEcccccHcccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccc
msnsqtpqdssafkrqlpfsamkppflapggdyhrfaaephrrpdqeaeaivvkspqlkrksdtadhdaessekttgpgyteivnsplqtpvsgkggkaqktsrlaknskigpqisasnlgspgnnltptgpcrydsslglLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRiqwkgldvsrpgeadenASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVteddikslpcfqnetliaikaphgttlevpdpdeavdypqrRYRIVLRSTMGPIDVYLVSQFEEKFEeihgaeappnlpsnsgfnenqtATVIteesrgkeievqEQDSQRIctdlsssqdfvSGIMKivpsevdsdadywllsdagvsitdiwrtepgvewndlgtlqedygmptvstpqpqtppsntaeappaaantgr
msnsqtpqdssafkrqLPFSAMKPPFLAPGGDYHRFAAEPhrrpdqeaeaivvkspqlkrksdtadhdaessekttgpgyteivnsplqtpvsgkggkaqktsrlaknskigpqisasnlgspgnNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASslqaevesltiqerrLDEQIRIMQERlrdlsedennQKWLFVTEDDIKSLPCFQNETLIAIKaphgttlevpdpdeavdyPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAeappnlpsnsgfNENQTATVITEESRGKEIEVQEQDSQRICTDlsssqdfvSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTVStpqpqtppsntaeappaaantgr
MSNSQTPQDSSAFKRQLPFSAMKPPFLAPGGDYHRFAAEPHRRPDQEAEAIVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMptvstpqpqtppsntaeappaaantGR
************************************************************************************************************************************CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLD************************************************QKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKF******************************************************DFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQE*******************************
******************************************************************************************************************************************LGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADEN*************************Q***RDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPD*******PQRRYRIVLRSTMGPIDVYLV************************************************************************SEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDY*****************************
************FKRQLPFSAMKPPFLAPGGDYHRFAAE**********AIVVKSP********************GPGYTEIVNSPLQ*****************KNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVS**************EVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITE******************TDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPT*************************
********************************************************QLK*************************************************************************CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQF************************************************************VSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMP**************************
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MSNSQTPQDSSAFKRQLPFSAMKPPFLAPGGDYHRFAAEPHRRPDQEAEAIVVKSPQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTVSTPQPQTPPSNTAEAPPAAANTGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query456 2.2.26 [Sep-21-2011]
Q9FV71469 Transcription factor E2FB yes no 0.940 0.914 0.602 1e-140
Q9FNY0485 Transcription factor E2FA no no 0.934 0.878 0.540 1e-120
Q9FV70396 Transcription factor E2FC no no 0.521 0.601 0.509 5e-64
Q61502335 Transcription factor E2F5 yes no 0.401 0.546 0.505 1e-43
O35261457 Transcription factor E2F3 no no 0.412 0.411 0.494 2e-43
O00716465 Transcription factor E2F3 yes no 0.412 0.404 0.494 2e-43
Q62814300 Transcription factor E2F5 no no 0.401 0.61 0.510 2e-43
Q15329346 Transcription factor E2F5 no no 0.394 0.520 0.502 3e-42
Q16254413 Transcription factor E2F4 no no 0.385 0.426 0.515 5e-42
Q8R0K9410 Transcription factor E2F4 no no 0.385 0.429 0.515 1e-41
>sp|Q9FV71|E2FB_ARATH Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1 Back     alignment and function desciption
 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/468 (60%), Positives = 332/468 (70%), Gaps = 39/468 (8%)

Query: 5   QTPQDSSAFKRQL--PFSAMKPPFLAPGGDYHRFAAEPHRR----PDQE-AEAIVVKSPQ 57
           + PQ   + KRQL    S+MKPP +APG +YHRF A   R      DQ  ++AIV+KS  
Sbjct: 4   EVPQQFPSSKRQLHPSLSSMKPPLVAPG-EYHRFDAAETRGGGAVADQVVSDAIVIKS-T 61

Query: 58  LKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISA 117
           LKRK+D  +   E +E  TG          LQTPVSGKGGKA+KTSR AK++K G   S 
Sbjct: 62  LKRKTDLVNQIVEVNELNTGV---------LQTPVSGKGGKAKKTSRSAKSNKSGTLASG 112

Query: 118 SNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDI 177
           SN GSPGNN    G CRYDSSLGLLTKKFINLIK AEDGILDLNKAADTLEVQKRRIYDI
Sbjct: 113 SNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDI 172

Query: 178 TNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQ 237
           TNVLEGIGLIEK LKNRIQWKGLDVS+PGE  E+ ++LQ EV++L  +E RLD+QIR  Q
Sbjct: 173 TNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQ 232

Query: 238 ERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRR 297
           ERL  LSEDENN++ LFVTE+DIK+LPCFQN+TLIA+KAPHGTTLEVPDPDEA  Y QRR
Sbjct: 233 ERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-QRR 291

Query: 298 YRIVLRSTMGPIDVYLVSQFEEKFEEIHGA--------------EAPPNLPSNSGFNENQ 343
           YRI+LRSTMGPIDVYLVSQFEE FE+I  A              + P NLPS SG  EN 
Sbjct: 292 YRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENH 351

Query: 344 TATV-ITEESRGKEIEVQE-QDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLSDA 401
             ++ + EES  + +E QE  D+QR+ +D+  S DFV GIMKIVP ++D   DYW  S+ 
Sbjct: 352 DVSMPMKEESTERNMETQEVDDTQRVYSDI-ESHDFVDGIMKIVPPDLDMGVDYWFRSEV 410

Query: 402 G-VSITDIWRTEPGVEWNDLGTLQEDYGMPTVST--PQPQTPPSNTAE 446
           G VSITD+W  E G +WN + T  +D+  P+ +    QPQTP S T E
Sbjct: 411 GEVSITDMWPDESGPDWNQMITFDQDHAGPSDNKILEQPQTPSSPTPE 458
Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1 Back     alignment and function description
>sp|Q9FV70|E2FC_ARATH Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1 Back     alignment and function description
>sp|Q61502|E2F5_MOUSE Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=2 Back     alignment and function description
>sp|O35261|E2F3_MOUSE Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2 Back     alignment and function description
>sp|O00716|E2F3_HUMAN Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1 Back     alignment and function description
>sp|Q62814|E2F5_RAT Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5 PE=2 SV=1 Back     alignment and function description
>sp|Q15329|E2F5_HUMAN Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1 Back     alignment and function description
>sp|Q16254|E2F4_HUMAN Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2 Back     alignment and function description
>sp|Q8R0K9|E2F4_MOUSE Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
225464840457 PREDICTED: transcription factor E2FB-lik 0.967 0.964 0.801 0.0
296084860446 unnamed protein product [Vitis vinifera] 0.967 0.988 0.801 0.0
224102857473 transcription factor E2F [Populus tricho 0.960 0.926 0.770 0.0
449444805462 PREDICTED: LOW QUALITY PROTEIN: transcri 0.980 0.967 0.742 0.0
449519844462 PREDICTED: LOW QUALITY PROTEIN: transcri 0.980 0.967 0.742 0.0
224132326455 transcription factor E2F [Populus tricho 0.960 0.962 0.782 0.0
11558192454 transcription factor (E2F) [Chenopodium 0.916 0.920 0.755 0.0
356539215435 PREDICTED: transcription factor E2FB-lik 0.949 0.995 0.736 1e-178
357471621460 Transcription factor E2F [Medicago trunc 0.982 0.973 0.696 1e-177
255565751414 E2F4,5, putative [Ricinus communis] gi|2 0.853 0.939 0.812 1e-177
>gi|225464840|ref|XP_002272473.1| PREDICTED: transcription factor E2FB-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/444 (80%), Positives = 392/444 (88%), Gaps = 3/444 (0%)

Query: 14  KRQLPFSAMKPPFLAPGGDYHRFAAEPHRRPDQEA-EAIVVKSPQLKRKSDTADHDAESS 72
           KR LPF   +PPF+   GDYHRF++   R PD EA EA+VVKSPQLKRKS+  D++AESS
Sbjct: 16  KRHLPFPPARPPFVPSPGDYHRFSSS-GRVPDHEADEAVVVKSPQLKRKSE-PDYEAESS 73

Query: 73  EKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQISASNLGSPGNNLTPTGP 132
           E T  PG+TE+VNSP+QTPVSGKGGKAQKTSR+ K S+ GPQ   SN GSPGNNLTP GP
Sbjct: 74  EWTAVPGFTEVVNSPVQTPVSGKGGKAQKTSRITKCSRSGPQTPVSNAGSPGNNLTPVGP 133

Query: 133 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 192
           CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK
Sbjct: 134 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLK 193

Query: 193 NRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKW 252
           NRIQWKGLDVSRPGE DEN +SLQ EVE+L+IQERRLD QIR MQERLRDLSEDENNQKW
Sbjct: 194 NRIQWKGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKW 253

Query: 253 LFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVY 312
           LFVTE+DIK LPCFQ ETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRS+MGPIDVY
Sbjct: 254 LFVTEEDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVY 313

Query: 313 LVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQRICTDLS 372
           LVSQFEEKFEEI+G EAPP+ PS+SG+NE+ TA ++TEESRGKEIE+Q QD+ R+ +DL+
Sbjct: 314 LVSQFEEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIEIQGQDAHRMSSDLN 373

Query: 373 SSQDFVSGIMKIVPSEVDSDADYWLLSDAGVSITDIWRTEPGVEWNDLGTLQEDYGMPTV 432
           +SQDFVSGIMKIVPS+VDSDADYWLLSDA VSITD+WRTEPGVEWN+L  L +DY M  V
Sbjct: 374 ASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELDALNDDYAMANV 433

Query: 433 STPQPQTPPSNTAEAPPAAANTGR 456
           STPQPQTPPS+ AE PPAA   GR
Sbjct: 434 STPQPQTPPSSAAEVPPAANTPGR 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296084860|emb|CBI28269.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102857|ref|XP_002312830.1| transcription factor E2F [Populus trichocarpa] gi|222849238|gb|EEE86785.1| transcription factor E2F [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444805|ref|XP_004140164.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor E2FB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519844|ref|XP_004166944.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor E2FB-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224132326|ref|XP_002328241.1| transcription factor E2F [Populus trichocarpa] gi|222837756|gb|EEE76121.1| transcription factor E2F [Populus trichocarpa] Back     alignment and taxonomy information
>gi|11558192|emb|CAC17702.1| transcription factor (E2F) [Chenopodium rubrum] Back     alignment and taxonomy information
>gi|356539215|ref|XP_003538095.1| PREDICTED: transcription factor E2FB-like [Glycine max] Back     alignment and taxonomy information
>gi|357471621|ref|XP_003606095.1| Transcription factor E2F [Medicago truncatula] gi|355507150|gb|AES88292.1| Transcription factor E2F [Medicago truncatula] Back     alignment and taxonomy information
>gi|255565751|ref|XP_002523865.1| E2F4,5, putative [Ricinus communis] gi|223536953|gb|EEF38591.1| E2F4,5, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query456
TAIR|locus:3685148469 E2F1 "E2F transcription factor 0.903 0.878 0.612 2e-127
TAIR|locus:2039220514 E2F3 "E2F transcription factor 0.578 0.513 0.569 3.2e-81
TAIR|locus:2202390396 ATE2F2 [Arabidopsis thaliana ( 0.567 0.654 0.488 3.3e-56
UNIPROTKB|F1RUH1358 E2F3 "Uncharacterized protein" 0.589 0.751 0.409 6.4e-44
UNIPROTKB|Q15329346 E2F5 "Transcription factor E2F 0.559 0.736 0.408 1.3e-43
UNIPROTKB|F1RXB8345 E2F5 "Uncharacterized protein" 0.559 0.739 0.418 1.7e-43
UNIPROTKB|C9JYE9347 E2F5 "Transcription factor E2F 0.559 0.734 0.411 2.2e-43
RGD|621357300 E2f5 "E2F transcription factor 0.557 0.846 0.408 2.2e-43
UNIPROTKB|F1LRB5339 E2f5 "Transcription factor E2F 0.578 0.778 0.399 3.5e-43
UNIPROTKB|E1BUH4414 415659 "Uncharacterized protei 0.447 0.492 0.476 7.3e-43
TAIR|locus:3685148 E2F1 "E2F transcription factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 275/449 (61%), Positives = 324/449 (72%)

Query:     3 NSQTPQDSSAFKRQL-P-FSAMKPPFLAPGGDYHRFAAEPHRR----PDQE-AEAIVVKS 55
             + + PQ   + KRQL P  S+MKPP +APG +YHRF A   R      DQ  ++AIV+KS
Sbjct:     2 SEEVPQQFPSSKRQLHPSLSSMKPPLVAPG-EYHRFDAAETRGGGAVADQVVSDAIVIKS 60

Query:    56 PQLKRKSDTADHDAESSEKTTGPGYTEIVNSPLQTPVSGKGGKAQKTSRLAKNSKIGPQI 115
               LKRK+D  +   E +E  TG          LQTPVSGKGGKA+KTSR AK++K G   
Sbjct:    61 T-LKRKTDLVNQIVEVNELNTGV---------LQTPVSGKGGKAKKTSRSAKSNKSGTLA 110

Query:   116 SASNLGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIY 175
             S SN GSPGNN    G CRYDSSLGLLTKKFINLIK AEDGILDLNKAADTLEVQKRRIY
Sbjct:   111 SGSNAGSPGNNFAQAGTCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIY 170

Query:   176 DITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADENASSLQAEVESLTIQERRLDEQIRI 235
             DITNVLEGIGLIEK LKNRIQWKGLDVS+PGE  E+ ++LQ EV++L  +E RLD+QIR 
Sbjct:   171 DITNVLEGIGLIEKTLKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRE 230

Query:   236 MQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQ 295
              QERL  LSEDENN++ LFVTE+DIK+LPCFQN+TLIA+KAPHGTTLEVPDPDEA  Y Q
Sbjct:   231 SQERLTSLSEDENNKRLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-Q 289

Query:   296 RRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAP---P-----------NLPSNSGFNE 341
             RRYRI+LRSTMGPIDVYLVSQFEE FE+I  A+ P   P           NLPS SG  E
Sbjct:   290 RRYRIILRSTMGPIDVYLVSQFEESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPE 349

Query:   342 NQTATV-ITEESRGKEIEVQE-QDSQRICTDLSSSQDFVSGIMKIVPSEVDSDADYWLLS 399
             N   ++ + EES  + +E QE  D+QR+ +D+ S  DFV GIMKIVP ++D   DYW  S
Sbjct:   350 NHDVSMPMKEESTERNMETQEVDDTQRVYSDIES-HDFVDGIMKIVPPDLDMGVDYWFRS 408

Query:   400 DAG-VSITDIWRTEPGVEWNDLGTLQEDY 427
             + G VSITD+W  E G +WN + T  +D+
Sbjct:   409 EVGEVSITDMWPDESGPDWNQMITFDQDH 437
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0003677 "DNA binding" evidence=IDA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0051302 "regulation of cell division" evidence=RCA;IMP
GO:0051446 "positive regulation of meiotic cell cycle" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0010090 "trichome morphogenesis" evidence=RCA;IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
TAIR|locus:2039220 E2F3 "E2F transcription factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202390 ATE2F2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUH1 E2F3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15329 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXB8 E2F5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYE9 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621357 E2f5 "E2F transcription factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRB5 E2f5 "Transcription factor E2F5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUH4 415659 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FV71E2FB_ARATHNo assigned EC number0.60250.94070.9147yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 2e-33
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information 
 Score =  120 bits (303), Expect = 2e-33
 Identities = 46/67 (68%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 134 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLIEKKLK 192
           R + SLGLLT+KF+ L + + DGI DLN+AA  L+V QKRRIYDITNVLEGIGLIEKK K
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKELDVKQKRRIYDITNVLEGIGLIEKKSK 60

Query: 193 NRIQWKG 199
           N I+W G
Sbjct: 61  NEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 456
KOG2577354 consensus Transcription factor E2F/dimerization pa 100.0
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.87
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.77
KOG2578388 consensus Transcription factor E2F/dimerization pa 98.96
KOG2829326 consensus E2F-like protein [Transcription] 98.69
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 94.43
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 92.27
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 91.49
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 91.41
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 91.21
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 89.61
COG1378247 Predicted transcriptional regulators [Transcriptio 89.3
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 88.27
COG3355126 Predicted transcriptional regulator [Transcription 86.69
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 86.53
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 86.27
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 86.18
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 82.94
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 82.13
PF1373055 HTH_36: Helix-turn-helix domain 80.86
TIGR02944130 suf_reg_Xantho FeS assembly SUF system regulator, 80.74
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 80.52
PF14394171 DUF4423: Domain of unknown function (DUF4423) 80.44
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1e-64  Score=508.25  Aligned_cols=271  Identities=44%  Similarity=0.636  Sum_probs=213.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHhhhcceeeehhhhHHhhhhccceecccCCeEEEeecCCCCCC
Q 012778          127 LTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPG  206 (456)
Q Consensus       127 ~tp~~~~R~d~SLglLTkKFI~Ll~~apdg~idLn~aA~~L~VqKRRIYDItNVLEGIGLIeK~sKN~i~W~G~d~s~~~  206 (456)
                      ..|.+++|+|+|||+||||||.|+++++||++|||+||+.|+|||||||||||||||||||+|++||+|+|+|.+....+
T Consensus        61 ~s~~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~  140 (354)
T KOG2577|consen   61 SSPSESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTG  140 (354)
T ss_pred             cCCCCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccccceeeehhhhhhcccceeeccccceeeecCCCcccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999987767


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhccCCCCCCCeEEEeeCCCCCeEEecC
Q 012778          207 EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPD  286 (456)
Q Consensus       207 ~~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPd  286 (456)
                      +..++.+.|++|++.|.++|+.||++|.+|+++|+.|++|..|++|+|||++||++|+.|++|||||||||++|+||||+
T Consensus       141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~f~~q~vi~vkap~et~levp~  220 (354)
T KOG2577|consen  141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPGFDEQTVIAVKAPPETRLEVPD  220 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccccCCceEEEEecCCcceEeccc
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCceEEEEecCCCceEEEEecCcchhhhhccCCCCCCCCCCCCCCCCCcccceeeecccccccccccccccc
Q 012778          287 PDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEIHGAEAPPNLPSNSGFNENQTATVITEESRGKEIEVQEQDSQR  366 (456)
Q Consensus       287 Pde~~~~~qr~YqI~LkS~~GPIdVyL~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (456)
                      +++      .+|+|+|+|++||||||||+.++...  ......++.   +++..+.....     +..     ...+.+.
T Consensus       221 ~~~------~~~~i~L~s~~GpI~v~l~~~e~~~~--~~~~~~~~~---~~~~~~~~~~~-----sp~-----~~~~~~~  279 (354)
T KOG2577|consen  221 PDE------DRYQIRLKSNQGPIDVYLCSEEEGEE--SEPTAKPVG---SSSSSEDTISP-----SPY-----LPEQPAS  279 (354)
T ss_pred             CCC------CceEEEeccCCCceeEEeccccccCc--cCCCCCCCC---CccccccCCCC-----CCC-----cCCchhh
Confidence            984      47999999999999999999877522  222222211   11111110000     000     0000001


Q ss_pred             ccCCCCCccc--ccCCceeecCCCC-CCCCCeeeecCCCCccccccCCCCCCCCC
Q 012778          367 ICTDLSSSQD--FVSGIMKIVPSEV-DSDADYWLLSDAGVSITDIWRTEPGVEWN  418 (456)
Q Consensus       367 ~~~~~~~s~~--~~~g~~ki~psd~-~~d~dywl~sd~~vsitd~w~t~~~~~w~  418 (456)
                      ..++|..+-+  +++-.....+++. -...|+|+....+++...+|-+.+-.+|+
T Consensus       280 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~l~~~~~~~d  334 (354)
T KOG2577|consen  280 LALNPQQSEELLDSSNLLSFFPSTSASGSSDIRESFSDDLSEPLISLSPPPRQED  334 (354)
T ss_pred             hhcCcccccchhhcccccccCccccccCCcceeccccccccCCcccCCCCccccc
Confidence            1111110000  0111111112222 35689999999999999999999988888

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>COG1378 Predicted transcriptional regulators [Transcription] Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF14394 DUF4423: Domain of unknown function (DUF4423) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
1cf7_A76 Structural Basis Of Dna Recognition By The Heterodi 9e-23
2aze_B106 Structure Of The Rb C-Terminal Domain Bound To An E 9e-08
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 129 PTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEV-QKRRIYDITNVLEGIGLI 187
           P  P R++ SLGLLT KF++L++ A+DG+LDL  AADTL V QKRRIYDITNVLEGIGLI
Sbjct: 2   PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLI 61
Query: 188 EKKLKNRIQWKGL 200
           EKK KN IQWKG+
Sbjct: 62  EKKSKNSIQWKGV 74
>pdb|2AZE|B Chain B, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer Length = 106 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query456
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 3e-41
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 9e-05
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Length = 106 Back     alignment and structure
 Score =  141 bits (357), Expect = 3e-41
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 207 EADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCF 266
                   L  ++  L   E++LD  + I   +LR LSED ++Q+  +VT  D++S+   
Sbjct: 3   HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADP 62

Query: 267 QNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQ 316
             + ++ IKAP  T L+  D  E        ++I L+S  GPIDV+L  +
Sbjct: 63  AEQMVMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCPE 105
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 100.0
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.95
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 99.29
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 93.16
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 92.46
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 92.29
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 92.06
1r7j_A95 Conserved hypothetical protein SSO10A; winged heli 91.62
1qbj_A81 Protein (double-stranded RNA specific adenosine D 91.38
2oqg_A114 Possible transcriptional regulator, ARSR family P; 91.2
3r0a_A123 Putative transcriptional regulator; structural gen 91.19
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 91.11
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 88.81
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 88.7
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 87.27
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 87.24
2gxg_A146 146AA long hypothetical transcriptional regulator; 85.92
1ku9_A152 Hypothetical protein MJ223; putative transcription 84.91
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 84.82
3qph_A342 TRMB, A global transcription regulator; transcript 84.68
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 84.29
3f6o_A118 Probable transcriptional regulator, ARSR family pr 83.82
2kko_A108 Possible transcriptional regulatory protein (possi 83.48
1y0u_A96 Arsenical resistance operon repressor, putative; s 82.79
2y75_A129 HTH-type transcriptional regulator CYMR; DNA bindi 82.18
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 81.86
1on2_A142 Transcriptional regulator MNTR; helix-turn-helix, 81.84
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 81.4
2hr3_A147 Probable transcriptional regulator; MCSG, structur 81.2
1s3j_A155 YUSO protein; structural genomics, MARR transcript 81.19
3u2r_A168 Regulatory protein MARR; structural genomics, PSI- 80.84
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 80.49
3s2w_A159 Transcriptional regulator, MARR family; structural 80.38
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 80.19
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 80.14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Back     alignment and structure
Probab=100.00  E-value=2.5e-36  Score=259.22  Aligned_cols=102  Identities=33%  Similarity=0.543  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhccCCCCCCCeEEEeeCCCCCeEEecCC
Q 012778          208 ADENASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDP  287 (456)
Q Consensus       208 ~~~~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP  287 (456)
                      +..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||||||||+||+||||+|
T Consensus         4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp   83 (106)
T 2aze_B            4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS   83 (106)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCceEEEEecCCCceEEEEecC
Q 012778          288 DEAVDYPQRRYRIVLRSTMGPIDVYLVSQ  316 (456)
Q Consensus       288 de~~~~~qr~YqI~LkS~~GPIdVyL~~~  316 (456)
                      ++       +|||||||++||||||||++
T Consensus        84 ~~-------~yqi~LkS~~GPIdV~L~~~  105 (106)
T 2aze_B           84 SE-------NFQISLKSKQGPIDVFLCPE  105 (106)
T ss_dssp             SS-------CEEEEEECSSSCCEEECCTT
T ss_pred             Cc-------ceEEEEECCCCCEEEEEeCC
Confidence            84       69999999999999999986
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 456
d2azeb1101 e.63.1.2 (B:201-301) Transcription factor E2F1 {Hu 7e-43
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 1e-34
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 1e-05
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (365), Expect = 7e-43
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 213 SSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLI 272
             L  ++  L   E++LD  + I   +LR LSED ++Q+  +VT  D++S+     + ++
Sbjct: 4   EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVM 63

Query: 273 AIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVS 315
            IKAP  T L+  D  E        ++I L+S  GPIDV+L  
Sbjct: 64  VIKAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCP 99
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query456
d2azeb1101 Transcription factor E2F1 {Human (Homo sapiens) [T 100.0
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.95
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 98.61
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 94.32
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 91.27
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 88.15
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 88.07
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 87.36
d1mkma175 Transcriptional regulator IclR, N-terminal domain 87.11
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 84.73
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 81.66
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 80.98
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=260.90  Aligned_cols=99  Identities=34%  Similarity=0.564  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhccCCCCCCCeEEEeeCCCCCeEEecCCCcc
Q 012778          211 NASSLQAEVESLTIQERRLDEQIRIMQERLRDLSEDENNQKWLFVTEDDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEA  290 (456)
Q Consensus       211 ~~~~Lq~El~~L~~eE~~LDelI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdPde~  290 (456)
                      +++.|++|+++|..+|+.||++|++|+++|++|++|++|++|+|||++||++|++|+++||||||||+||+||||+|++ 
T Consensus         2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~gT~LeVPdp~~-   80 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE-   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSS-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCCCEEeecCCCc-
Confidence            4688999999999999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             cCCCCCceEEEEecCCCceEEEEecC
Q 012778          291 VDYPQRRYRIVLRSTMGPIDVYLVSQ  316 (456)
Q Consensus       291 ~~~~qr~YqI~LkS~~GPIdVyL~~~  316 (456)
                            +|||||||++||||||||++
T Consensus        81 ------~yqi~lkS~~GpI~V~Lc~~  100 (101)
T d2azeb1          81 ------NFQISLKSKQGPIDVFLCPE  100 (101)
T ss_dssp             ------CEEEEEECSSSCCEEECCTT
T ss_pred             ------cEEEEEecCCCCEEEEEeCC
Confidence                  69999999999999999985
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure