Citrus Sinensis ID: 012792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEccEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEEEEcccccccEEccccccccccccEEccEEEEEEEcccccccccccccHcHHHccccccccccHHccccccccHHHHcccccHHHHcccccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEEccccccHHHHEHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnftttfrgnlsllphcssccdirfqpilaslhvtrpvrcrlgnfssykvSRFCRKKRELICRVtdtqtepdsnndkekevhdgqenqpatasdqeddksqpdsqldsqpqvenqingndvadtkggvqddgngevasgsplpgvkpqqldeyiripkETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggrIAFALWGRKVFHLKLF
Flexible Loop (DISEMBL)
mnftttfrgnlsllPHCSSCCDIRFQPILASLHVTRPVrcrlgnfssykvsrfcrkkrelicrvtdtqtepdsnndkekevhdgqenqpatasdqeddksQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGevasgsplpgvkpqqLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Low Complexity Region (SEG)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEddksqpdsqldsqpqVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Disordered region (IsUnstruct)
****TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVT************************************************************************************LDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLK**
Disordered Region (DISOPRED)
****TTFRGNLSLLPHCSSCCDIRFQPILA************************************************************************************************************************************ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVV**********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Disordered Region (DISEMBL)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDT********************************************VENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Disordered Region (DISPRO)
*********NLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTD************************************************************************************DEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDVADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVFHLKLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
255571887	525	metalloendopeptidase, putative [Ricinus	0.964	0.838	0.743	0.0
359486422	543	PREDICTED: uncharacterized protein LOC10	0.971	0.815	0.723	0.0
334187443	524	ethylene-dependent gravitropism-deficien	0.960	0.835	0.674	1e-166
42573279	527	ethylene-dependent gravitropism-deficien	0.960	0.831	0.676	1e-166
356501144	523	PREDICTED: uncharacterized protein LOC10	0.940	0.820	0.701	1e-164
449441596	456	PREDICTED: uncharacterized protein LOC10	0.888	0.888	0.701	1e-163
297810677	558	peptidase M50 family protein [Arabidopsi	0.960	0.784	0.639	1e-162
356551482	520	PREDICTED: uncharacterized protein LOC10	0.936	0.821	0.694	1e-162
15239226	556	ethylene-dependent gravitropism-deficien	0.960	0.787	0.635	1e-161
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.864	0.722	0.663	1e-155

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/452 (74%), Positives = 376/452 (83%), Gaps = 12/452 (2%)

Query: 1   MNFTTTFRGNLS--LLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKR 58
           M+    FRGN +  LLP  S C          S+   R +RCRL +F  Y VSRF  +KR
Sbjct: 1   MSLIAAFRGNFTPLLLPLSSHCSSCTSS---VSVTSQRKLRCRLRDFKLYHVSRFV-EKR 56

Query: 59  ELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQING 118
            ++CRVT+T+TEPD NNDKEKEVH+G E  P T S       Q  S+ DSQP+V NQI+ 
Sbjct: 57  VIVCRVTETETEPDGNNDKEKEVHEGGETPPTTGS-----AGQVSSESDSQPRVVNQISN 111

Query: 119 ND-VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVT 177
           ND   +++   QD     VASGSPLPGVK QQLDE  RIPK TIDILKDQVFGFDTFFVT
Sbjct: 112 NDEQTNSESSTQDADAENVASGSPLPGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVT 171

Query: 178 NQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKT 237
           +QEPYEGGVLFKGNLRG+AAK+YEK++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKT
Sbjct: 172 SQEPYEGGVLFKGNLRGKAAKSYEKLTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKT 231

Query: 238 LQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALV 297
           LQPETTAVPEWFAAGAFGLVT+FTLLLRNVPALQSNLLSTFDNL LL +GL GAL+TAL+
Sbjct: 232 LQPETTAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSTFDNLELLKDGLSGALITALI 291

Query: 298 IGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG 357
           +GVHE+GHIL AKS+ V+LGVPYFVPSWQIGSFGAITRI NIV KREDLLKVAAAGPLAG
Sbjct: 292 LGVHEVGHILVAKSSDVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAG 351

Query: 358 FSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVI 417
           F+LGFVLFLVGF+ PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GTPISVNPLVI
Sbjct: 352 FALGFVLFLVGFVLPPSDGIGLVVDASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVI 411

Query: 418 WAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
           WAWAG+LINAINSIPAGELDGGRI FA+WGRK
Sbjct: 412 WAWAGMLINAINSIPAGELDGGRILFAIWGRK 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/467 (72%), Positives = 385/467 (82%), Gaps = 24/467 (5%)

Query: 1   MNFTTTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRF-CRKKRE 59
           MNF  TFRGN +   HCSSCCD+RFQP L+S  V R  RCR+ N   ++VSR   R++  
Sbjct: 1   MNFPATFRGNFNPFSHCSSCCDLRFQPFLSSPIVWRQKRCRISNLQVHQVSRLGSRRRPR 60

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQ---- 115
           ++C VT+T+TEP++NND+EK  H+     P+      D   Q D QLDSQP V +Q    
Sbjct: 61  IVCGVTETETEPENNNDEEK-AHENGGMPPSI-----DSTVQNDPQLDSQPLVADQDKDQ 114

Query: 116 ------INGNDVADT-------KGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETID 162
                 +NG+++ ++       +G VQD  N EVASGSPLPGVKPQ LDE IRIPKETID
Sbjct: 115 FVHNAMLNGDNMVNSDNQETEAQGNVQDSENLEVASGSPLPGVKPQVLDESIRIPKETID 174

Query: 163 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVN 222
           ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEKI+ RM+++FGD+YKLFLL+N
Sbjct: 175 ILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEKITIRMQDRFGDKYKLFLLIN 234

Query: 223 PEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLN 282
           PEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL LRNVPALQSNLLS FDNLN
Sbjct: 235 PEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTLFLRNVPALQSNLLSVFDNLN 294

Query: 283 LLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSK 342
           LL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFVPSWQIGSFGAITRI NIV  
Sbjct: 295 LLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFVPSWQIGSFGAITRILNIVPN 354

Query: 343 REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGD 402
           REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVDASVFHES LAGG AKLLLGD
Sbjct: 355 REDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVDASVFHESLLAGGIAKLLLGD 414

Query: 403 VLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
           VLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+FA+WGRK
Sbjct: 415 VLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRISFAIWGRK 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 304/451 (67%), Positives = 359/451 (79%), Gaps = 13/451 (2%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRE 59
           MN    +FRGN  +L  CSSCC ++FQP +A+   T  +       S  K      +KRE
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAA---TSSLNFGQTGTSRRKKDLKLERKRE 57

Query: 60  LICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGN 119
            + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+  GN
Sbjct: 58  TLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEAPGN 109

Query: 120 DVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTN 178
           +  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+
Sbjct: 110 EEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTS 169

Query: 179 QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTL 238
           QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L
Sbjct: 170 QEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSL 229

Query: 239 QPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVI 298
           +PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTALV+
Sbjct: 230 EPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVL 289

Query: 299 GVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF 358
           GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGF
Sbjct: 290 GVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGF 349

Query: 359 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 418
           SLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIW
Sbjct: 350 SLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIW 409

Query: 419 AWAGLLINAINSIPAGELDGGRIAFALWGRK 449
           AWAGLLIN INSIPAGELDGG+IAF++WGRK
Sbjct: 410 AWAGLLINGINSIPAGELDGGKIAFSIWGRK 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 307/454 (67%), Positives = 362/454 (79%), Gaps = 16/454 (3%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFF 175
            GN+  +       DG+  EV+SGSPLPGV P QLD+ +R+PKETIDIL+ QVFGFDTFF
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNPLQLDDSMRLPKETIDILRGQVFGFDTFF 169

Query: 176 VTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPR 235
           VT+QEPYEGGVLFKGNLRG+ A +YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR
Sbjct: 170 VTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPR 229

Query: 236 KTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTA 295
           ++L+PETTAVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVTA
Sbjct: 230 RSLEPETTAVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTA 289

Query: 296 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPL 355
           LV+GVHELGHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPL
Sbjct: 290 LVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPL 349

Query: 356 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPL 415
           AGFSLG +LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPL
Sbjct: 350 AGFSLGLILFLIGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPL 409

Query: 416 VIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
           VIWAWAGLLIN INSIPAGELDGG+IAF++WGRK
Sbjct: 410 VIWAWAGLLINGINSIPAGELDGGKIAFSIWGRK 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 315/449 (70%), Positives = 362/449 (80%), Gaps = 20/449 (4%)

Query: 5   TTFRGNLSL-LPHCSSC--CDIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           + FRGNL + L  C+SC   D+RFQ      H     RCR   F   +  R  R+ R + 
Sbjct: 9   SAFRGNLLVPLSRCTSCFKLDLRFQHSDGFRHS----RCRRSLFKLIRDPRSSRR-RGIA 63

Query: 62  CRVTDTQTEPDSNND-KEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
           C VT    EPD+ +D KEKE     E      S ++      D++  ++   EN+   +D
Sbjct: 64  CSVT----EPDNGSDEKEKEADKNGETLRVEDSSEQSIPPPVDAEQLNEFSDENK-GQSD 118

Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQE 180
           V +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+
Sbjct: 119 VQN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQD 172

Query: 181 PYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQP 240
           PYEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQP
Sbjct: 173 PYEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQP 232

Query: 241 ETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 300
           ETTAVPEWFAAG+FGL+TVFTLLLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GV
Sbjct: 233 ETTAVPEWFAAGSFGLITVFTLLLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGV 292

Query: 301 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSL 360
           HELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++L
Sbjct: 293 HELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYAL 352

Query: 361 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW 420
           G +L L+GF+ PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAW
Sbjct: 353 GLLLLLLGFVLPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAW 412

Query: 421 AGLLINAINSIPAGELDGGRIAFALWGRK 449
           AGLLINAINSIPAGELDGGRI+FALWGRK
Sbjct: 413 AGLLINAINSIPAGELDGGRISFALWGRK 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441596|ref|XP_004138568.1| PREDICTED: uncharacterized protein LOC101217814 [Cucumis sativus]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/429 (70%), Positives = 344/429 (80%), Gaps = 24/429 (5%)

Query: 23  IRFQPILASLHVTR-PVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNNDKEKEV 81
           +RF P  A     R   R R  +    +VS   R KR + C+VT+TQTEPD NNDKE++ 
Sbjct: 1   MRFNPCFAPFTNFRDQQRIRHSSLKLCQVS--SRGKRGIACKVTETQTEPDGNNDKEEDD 58

Query: 82  HDGQENQPATASDQEDDKSQPDSQ-LDSQPQVENQINGNDVADTKGGVQDDGNGEVASGS 140
             G + QP+ +    +DK Q DSQ +D    VEN+         +G +QD  N EVASGS
Sbjct: 59  SKGGD-QPSFSDSAAEDKFQLDSQAVDEVNIVENK--------DQGDIQDIDNVEVASGS 109

Query: 141 PLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTY 200
           PLPG+KPQQLDE  RIP+ET++ILK+QVFGFDTFFVT+Q+PYEGGVLFKGNLRG+AAK+Y
Sbjct: 110 PLPGLKPQQLDESFRIPRETVEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGEAAKSY 169

Query: 201 EKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVF 260
           EKI+ RM++ FGD YKLFLL+NPEDDKPVAVVVPRKTLQPETTAVPEWFAA AFGLVTVF
Sbjct: 170 EKITRRMQDTFGDVYKLFLLINPEDDKPVAVVVPRKTLQPETTAVPEWFAAAAFGLVTVF 229

Query: 261 TLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPY 320
           TLLLRNVPALQSNLLSTFDNL LL +GLPGA VTALV+GVHELGHIL A+  GV+ G+PY
Sbjct: 230 TLLLRNVPALQSNLLSTFDNLELLKDGLPGAFVTALVLGVHELGHILVARDAGVKFGIPY 289

Query: 321 FVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIV 380
           FVPSWQIGSFGAITRI NIV KREDLLKVA AGPLAGFS+GF+L+++GFI PP       
Sbjct: 290 FVPSWQIGSFGAITRILNIVPKREDLLKVALAGPLAGFSVGFLLYILGFILPP------- 342

Query: 381 VDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR 440
               VFHESFLAGG AKLLLGD LK+GTPIS+NPLVIWAWAGLLINAINSIPAGELDGGR
Sbjct: 343 ----VFHESFLAGGIAKLLLGDALKEGTPISLNPLVIWAWAGLLINAINSIPAGELDGGR 398

Query: 441 IAFALWGRK 449
           IAF++WGRK
Sbjct: 399 IAFSIWGRK 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 310/485 (63%), Positives = 367/485 (75%), Gaps = 47/485 (9%)

Query: 1   MNFT-TTFRGNLSLLPHCSSCCDIRFQPILASLHV-----TRPVRCRLGNFSSYKVSRFC 54
           MN    +FRGN  +L  CSS C ++FQP +A+        TR  R +     + K+ R  
Sbjct: 1   MNLAVASFRGNFGVLSQCSSYCSLQFQPFVAATSSLNFGQTRTSRRK----KNLKLERVF 56

Query: 55  RKKRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           RK RE + RVT+TQTEP+ NND++    +G+E    T++D  D  +Q  ++L+SQ  + N
Sbjct: 57  RK-RETLVRVTETQTEPEGNNDEDNNGEEGKE----TSAD--DPPTQIPTELNSQSTIVN 109

Query: 115 QINGNDVADTKGGVQDDGNG-EVASGSPLPGV---------------------------- 145
           +  GN+  +       DG+  EV+SGSPLPGV                            
Sbjct: 110 EAPGNEEENKAQLSSQDGDKLEVSSGSPLPGVNVSITNNVKYKGDSLMLSIYLSFIKSCC 169

Query: 146 -KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIS 204
            +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI 
Sbjct: 170 EQPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGEPAKSYEKIK 229

Query: 205 TRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLL 264
           TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL L
Sbjct: 230 TRMENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFL 289

Query: 265 RNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPS 324
           RNVPALQS+LLS FDNL LL +GLPGALVT LV+GVHELGHIL A S G++LGVP+FVPS
Sbjct: 290 RNVPALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHELGHILVANSLGIKLGVPFFVPS 349

Query: 325 WQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDAS 384
           WQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDAS
Sbjct: 350 WQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLLGLFVPPSDGIGVVVDAS 409

Query: 385 VFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA 444
           VFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGGRIAF+
Sbjct: 410 VFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGRIAFS 469

Query: 445 LWGRK 449
           +WGRK
Sbjct: 470 IWGRK 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 311/448 (69%), Positives = 365/448 (81%), Gaps = 21/448 (4%)

Query: 5   TTFRGNLSL-LPHCSSCC--DIRFQPILASLHVTRPVRCRLGNFSSYKVSRFCRKKRELI 61
           ++FRGNL + L  C+SC   D+R Q      H+ RP       +SS+K+ R  R+ R + 
Sbjct: 9   SSFRGNLLVPLSRCTSCLELDLRIQHSEGFRHL-RP------RWSSFKLIRNPRR-RVIA 60

Query: 62  CRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGNDV 121
           C VT+     + +++KEKE     E  P   S ++      D++  ++   EN+   +DV
Sbjct: 61  CSVTEPH---NGSDEKEKEADKNGETLPLEDSSEQSIPPPVDAEQINEFSDENK-GQSDV 116

Query: 122 ADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEP 181
            +      DD N EVASGSPLPGVKPQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+P
Sbjct: 117 QN-----MDDSN-EVASGSPLPGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDP 170

Query: 182 YEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPE 241
           YEGGVLFKGNLRGQAAK+Y+KIS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQPE
Sbjct: 171 YEGGVLFKGNLRGQAAKSYDKISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQPE 230

Query: 242 TTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVH 301
           TTAVPEWFAAG+FGLVTVFTLLLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GVH
Sbjct: 231 TTAVPEWFAAGSFGLVTVFTLLLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGVH 290

Query: 302 ELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG 361
           ELGH LAAK TGV+LGVPYFVPSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG
Sbjct: 291 ELGHFLAAKDTGVKLGVPYFVPSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALG 350

Query: 362 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWA 421
            +L L+GFI PPSDGIG+VVDASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWA
Sbjct: 351 LLLLLLGFILPPSDGIGVVVDASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWA 410

Query: 422 GLLINAINSIPAGELDGGRIAFALWGRK 449
           GLLINAINSIPAGELDGGRI+FALWGRK
Sbjct: 411 GLLINAINSIPAGELDGGRISFALWGRK 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 307/483 (63%), Positives = 363/483 (75%), Gaps = 45/483 (9%)

Query: 1   MNFTT-TFRGNLSLLPHCSSCCDIRFQPILA---SLHVTRPVRCRLGNFSSYKVSRFCRK 56
           MN    +FRGN  +L  CSSCC ++FQP +A   SL+  +    R       K+ R  RK
Sbjct: 1   MNLAVASFRGNFGVLSQCSSCCSLQFQPFVAATSSLNFGQTGTSR--RKKDLKLERVFRK 58

Query: 57  KRELICRVTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVENQI 116
            RE + RVT+TQTEP+ N+D        ++N+    S  +D  ++  ++L+SQ  V N+ 
Sbjct: 59  -RETLVRVTETQTEPEGNDD--------EDNKEGKESSADDPPTKIPTELNSQSTVVNEA 109

Query: 117 NGNDVADTKGGVQDDGNG-EVASGSPLPGV-----------------------------K 146
            GN+  +       DG+  EV+SGSPLPGV                             +
Sbjct: 110 PGNEEENKAQFSSQDGDKLEVSSGSPLPGVNVSIIIHVIYKDDSIMFSGCLSFIKSCCEQ 169

Query: 147 PQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTR 206
           P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI TR
Sbjct: 170 PLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTR 229

Query: 207 MKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRN 266
           M+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LRN
Sbjct: 230 MENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLRN 289

Query: 267 VPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQ 326
           VPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSWQ
Sbjct: 290 VPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQ 349

Query: 327 IGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVF 386
           IGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASVF
Sbjct: 350 IGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASVF 409

Query: 387 HESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALW 446
           HESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++W
Sbjct: 410 HESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIW 469

Query: 447 GRK 449
           GRK
Sbjct: 470 GRK 472

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/407 (66%), Positives = 330/407 (81%), Gaps = 13/407 (3%)

Query: 56  KKRELICR-VTDTQTEPDSNNDKEKEVHDGQENQPATASDQEDDKSQPDSQLDSQPQVEN 114
           + R++ C+ +T+T++E D + +++KE  D   +    +  + +  ++ DS +D++     
Sbjct: 55  RSRKVACQAMTETESEGDGDKEEKKEFGDDASSPSVDSVAEANGPAESDSSIDNKKDETA 114

Query: 115 QINGNDVADTKGGVQDDGNG-----------EVASGSPLPGVKPQQLDEYIRIPKETIDI 163
                  +DT   V  D              EV SGSPLPG+K QQLD+ +RIPK TIDI
Sbjct: 115 NAELLSSSDTVQNVDGDATSTNDVQENVEVIEVVSGSPLPGMK-QQLDDSVRIPKATIDI 173

Query: 164 LKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNP 223
           LKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R++NKFGD+YKLFLL+NP
Sbjct: 174 LKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRLQNKFGDEYKLFLLINP 233

Query: 224 EDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNL 283
           ED+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNVP LQ NLLSTFDNL L
Sbjct: 234 EDEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNVPVLQDNLLSTFDNLEL 293

Query: 284 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKR 343
           L +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQIGSFGAITRI NIV  R
Sbjct: 294 LKDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQIGSFGAITRIVNIVRNR 353

Query: 344 EDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDV 403
           EDLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFHESFL GG AKLLLGDV
Sbjct: 354 EDLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFHESFLVGGLAKLLLGDV 413

Query: 404 LKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKV 450
           LK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WGRK+
Sbjct: 414 LKEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWGRKI 460

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.666	0.546	0.756	7.1e-141
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.370	0.308	0.323	1.6e-26
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.622	0.495	0.246	3.7e-16

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 230/304 (75%), Positives = 258/304 (84%)

Query:   146 KPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 205
             +P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct:   169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query:   206 RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 265
             RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct:   229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query:   266 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 325
             NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct:   289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query:   326 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASV 385
             QIGSFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASV
Sbjct:   349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query:   386 FHESXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL 445
             FHES            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++
Sbjct:   409 FHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSI 468

Query:   446 WGRK 449
             WGRK
Sbjct:   469 WGRK 472

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
 Identities = 57/176 (32%), Positives = 83/176 (47%)

Query:   280 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 335
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   336 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 392
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   393 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR 448
                              +S++PLVI  W GL   A N +P G LDGGR     +G+
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGK 461

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
 Identities = 77/312 (24%), Positives = 136/312 (43%)

Query:   159 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 217
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   218 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 270
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   271 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 328
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   329 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 385
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   386 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 436
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   437 DGGRIAFALWGR 448
             +GGRIA A++GR
Sbjct:   470 EGGRIAQAMFGR 481

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	6e-32
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	7e-19
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	8e-17
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	5e-12
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	6e-10
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	2e-06
cd06163	182	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 p	5e-05
COG1994	230	COG1994, SpoIVFB, Zn-dependent proteases [General	0.001
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	0.002
cd06159	263	cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaea	0.002

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  120 bits (302), Expect = 6e-32
 Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 49/201 (24%)

Query: 253 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 312
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 313 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 372
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 373 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 432
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 433 AGELDGGRIAFALWGRKVFHL 453
            G+LDGG I  AL+GR+V  L
Sbjct: 133 VGQLDGGHIVRALFGRRVAAL 153

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 84.4 bits (209), Expect = 7e-19
 Identities = 43/175 (24%), Positives = 58/175 (33%), Gaps = 20/175 (11%)

Query: 289 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 331
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 332 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 391
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 392 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALW 446
             G   +             V  L   A   L +   N +P   LDGG I  +L 
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLL 172

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 43/178 (24%), Positives = 55/178 (30%), Gaps = 40/178 (22%)

Query: 288 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 336
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 337 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 391
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 392 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
           A                          A   L +   N +P   LDGGRI  AL    
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAI 154

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 41/167 (24%)

Query: 287 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 346
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 347 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 406
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 407 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRKVFH 452
                       A   L++   N +PA  LDGGR+  A LW R  + 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYR 156

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 42/184 (22%), Positives = 59/184 (32%), Gaps = 42/184 (22%)

Query: 269 ALQSNLLSTFDNLNLLTNGLPGALVTALV---IGVHELGHILAAKSTGVELGVPYFVPSW 325
           +    +             L G     L+   + +HELGH L A+  G+       V S 
Sbjct: 24  SFGPGVFPAVPPALGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIP------VRSI 77

Query: 326 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASV 385
            +  FG + R+            +A AGPL    L  +  L+    P S           
Sbjct: 78  TLFLFGGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLLSLALPGSG---------- 127

Query: 386 FHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA- 444
              +   G     L                   A   LL+   N +PA  LDGGR+  A 
Sbjct: 128 ---AGPLGVLLGYL-------------------ALINLLLAVFNLLPAFPLDGGRVLRAL 165

Query: 445 LWGR 448
           LW R
Sbjct: 166 LWRR 169

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 37/172 (21%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 287 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 339
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 340 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 397
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 398 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
             +         I  N L   A   + +  +N +P   LDGG + F L    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL 337

Length = 375

>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 54/179 (30%), Positives = 72/179 (40%), Gaps = 44/179 (24%)

Query: 288 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFG-AITRIRNIVSKREDL 346
           L   LV  ++I VHELGH L AK  GV+      V  + IG FG  +   +    K E  
Sbjct: 2   LAFILVLGILIFVHELGHFLVAKLFGVK------VEEFSIG-FGPKLFSFK----KGETE 50

Query: 347 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHES--------FLAGGFAKL 398
             ++A  PL     G+V  L G    P +      D   F+            AG  A  
Sbjct: 51  YSISAI-PLG----GYVKML-GED--PEEEADPEDDPRSFNSKPVWQRILIVFAGPLANF 102

Query: 399 LLGDVLKDGTPISVNPLVIWAWAGLL-IN--AINSIPAGELDGGRIAFALW----GRKV 450
           LL  VL           V+ ++  LL IN   +N +P   LDGG + F L     GR +
Sbjct: 103 LLAIVLF---------AVLLSFLALLSINLGILNLLPIPALDGGHLLFLLIEAIRGRPL 152

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA. Length = 182

>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function prediction only]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 36/153 (23%), Positives = 49/153 (32%), Gaps = 36/153 (23%)

Query: 301 HELGHILAAKSTGVELGVPYFVPSWQIGSFGAI-TRIRNIVSKREDLLKVA-AAGPLAGF 358
           H LGH   A   G++L +         G    +    R     R     V+ A GPL   
Sbjct: 58  HPLGHSDEAGRLGLKLLLALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNI 117

Query: 359 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW 418
           +L  +  L   +F                 S L    A L L           VN     
Sbjct: 118 ALAVLGLLALSLFLYH--------------SVLFAFLAALAL-----------VN----- 147

Query: 419 AWAGLLINAINSIPAGELDGGRIAFALWGRKVF 451
               L++   N +P   LDGGR+  AL  R+  
Sbjct: 148 ----LVLALFNLLPIPPLDGGRVLRALLPRRYG 176

Length = 230

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 45/211 (21%), Positives = 70/211 (33%), Gaps = 49/211 (23%)

Query: 283 LLTNGLPGALVTALVIGVHELGHILAAKSTGVEL------------------GVPYFVPS 324
           L+   +   +   +++ VHELGH   A+  GV++                  G  Y + +
Sbjct: 1   LMLTIIAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSA 60

Query: 325 WQIGSFGAIT------RIRNIVSKREDL---------LKVAAAGPLAGFSLGFVLFLV-- 367
             +G +  +        +      R            + +  AGPL  F L  VLF+V  
Sbjct: 61  IPLGGYVKMLGEDAEEVVLKGPEPRPRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF 120

Query: 368 ---GFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLK--DGTPISVNPLVIWAWAG 422
              G +   S  +G V   S       A   A L  GD +   DG  ++    V      
Sbjct: 121 FVIGLVPVASPVVGEVAPKS-------AAALAGLRPGDRIVAVDGEKVASWDDVRRLLVA 173

Query: 423 LLINAIN--SIPAGELDGGRIAFALWGRKVF 451
              +  N  +I    LDG   A A    K  
Sbjct: 174 AAGDVFNLLTILVIRLDGEAHAVAAEIIKSL 204

Length = 375

>gnl|CDD|100080 cd06159, S2P-M50_PDZ_Arch, Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 21/91 (23%)

Query: 291 ALVTALVIGVHELGHILAAKSTGVE--------LGVPY--FVPSWQIGSFGAITRIRNIV 340
           ALV  +V  VHEL H + A+  G++        L +P   FV   +     A  RIR   
Sbjct: 116 ALVVGVV--VHELSHGILARVEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIR--- 170

Query: 341 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIF 371
                 L++ AAG  A F +  + F + F++
Sbjct: 171 ------LRIFAAGVTANFVVALIAFALFFLY 195

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present. Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.95
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.93
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.91
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.85
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.85
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.84
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.83
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.79
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.77
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.49
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.38
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.99
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.72
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.48
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.42
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	96.28
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.13
PF11667	111	DUF3267: Protein of unknown function (DUF3267); In	84.15

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.95  E-value=3.4e-28  Score=228.17  Aligned_cols=149  Identities=42%  Similarity=0.742  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHhhccccccccccccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEE
Q 012792          254 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  333 (456)
Q Consensus       254 l~l~Tl~T~~~~~~~~l~~~~~~~~~~~~~l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGav  333 (456)
                      ++++|+.+....+.-....   +..+++..+..++++++++++++++||+||+++||++|+|+..++++|...+|++|++
T Consensus         3 ~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGAWLSGN---DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHHHHhcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            4566666666554321111   1235677788899999999999999999999999999999999999998779999999


Q ss_pred             EEcCccccCccceeEEEEchHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccch
Q 012792          334 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  413 (456)
Q Consensus       334 i~~~s~~~~R~alf~IAlAGPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lh  413 (456)
                      ++.++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99988888999999999999999999998776543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhhcccch
Q 012792          414 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKVF  451 (456)
Q Consensus       414 pL~~ag~inLvLtafNLLPigPLDGGRIL~Allgrr~~  451 (456)
                       +..++|+|+++++|||+|++|||||||+++++++|++
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~  151 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVA  151 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHH
Confidence             1245889999999999999999999999999999864

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.93  E-value=2.4e-25  Score=214.91  Aligned_cols=135  Identities=30%  Similarity=0.383  Sum_probs=113.7

Q ss_pred             ccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCccccCccceeEEEEchHHHH
Q 012792          278 FDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAG  357 (456)
Q Consensus       278 ~~~~~~l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~~~R~alf~IAlAGPLan  357 (456)
                      ..+...+..++.+++++++++++||+||+++||++|+++.      .+.+.+||+++.+++...++++++.|++|||++|
T Consensus        36 ~~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~N  109 (227)
T cd06164          36 ALGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVS  109 (227)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHH
Confidence            3456678889999999999999999999999999999997      7788889999999888888899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCc
Q 012792          358 FSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELD  437 (456)
Q Consensus       358 fllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLD  437 (456)
                      ++++++++++........            .+                    .....+.+++++|+++++|||+|++|||
T Consensus       110 llla~i~~~l~~~~~~~~------------~~--------------------~~~~~~~~~~~~Nl~l~~fNLlP~~PLD  157 (227)
T cd06164         110 LVLALLFLLLSLALPGSG------------AG--------------------PLGVLLGYLALINLLLAVFNLLPAFPLD  157 (227)
T ss_pred             HHHHHHHHHHHHHhcccc------------ch--------------------HHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence            999998887765432110            00                    0112356789999999999999999999


Q ss_pred             hHHHHHHhhcccc
Q 012792          438 GGRIAFALWGRKV  450 (456)
Q Consensus       438 GGRIL~Allgrr~  450 (456)
                      ||||+++++.++.
T Consensus       158 Ggril~~ll~~~~  170 (227)
T cd06164         158 GGRVLRALLWRRT  170 (227)
T ss_pred             hHHHHHHHHHHhc
Confidence            9999999988876

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.91  E-value=2e-23  Score=198.49  Aligned_cols=129  Identities=29%  Similarity=0.426  Sum_probs=109.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCccccCccceeEEEEchHHHHHHHH
Q 012792          282 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  361 (456)
Q Consensus       282 ~~l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~~~R~alf~IAlAGPLanfllA  361 (456)
                      ..|..++.+++.+++++++||+||+++||++|++++      .+.+.+||+.+++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            457788899999999999999999999999999987      78888899999887766688999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHH
Q 012792          362 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  441 (456)
Q Consensus       362 ll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLDGGRI  441 (456)
                      +++.++....+..                                  ......+.+.+++|+.+++|||+|++|||||||
T Consensus        99 ~~~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG----------------------------------GPLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc----------------------------------hHHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            9887665432110                                  001134567889999999999999999999999


Q ss_pred             HHHhhcccc
Q 012792          442 AFALWGRKV  450 (456)
Q Consensus       442 L~Allgrr~  450 (456)
                      ++++++++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999988776

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=1.7e-21  Score=179.31  Aligned_cols=138  Identities=28%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCC----ccccc-------ccceeeeeEEEEcCcccc-----CccceeEEEEc
Q 012792          289 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVP-------SWQIGSFGAITRIRNIVS-----KREDLLKVAAA  352 (456)
Q Consensus       289 p~aL~Ll~iL~iHElGHalaAr~~Gvkvs~----P~fIP-------~i~Lg~FGavi~~~s~~~-----~R~alf~IAlA  352 (456)
                      .+.+++++++.+||+||+++||++|+++..    ..+.|       .+.+.++|+++++.+...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356778889999999999999999998752    11111       122344688877766543     48899999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 012792          353 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  432 (456)
Q Consensus       353 GPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLP  432 (456)
                      ||++|+++|++++++..........    ..   ..+                 ......+.+.+++++|+.+++|||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~----~~---~~~-----------------~~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA----PV---GQA-----------------ASSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc----ch---hhh-----------------HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999988776654321100    00   000                 00112346778899999999999999


Q ss_pred             CCCCchHHHHHHhhcccc
Q 012792          433 AGELDGGRIAFALWGRKV  450 (456)
Q Consensus       433 igPLDGGRIL~Allgrr~  450 (456)
                      ++||||||++++++.++.
T Consensus       138 i~plDGg~il~~~l~~~~  155 (180)
T cd05709         138 IPPLDGGRILRALLEAIR  155 (180)
T ss_pred             CCCCChHHHHHHHHhHHH
Confidence            999999999999988765

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=4.9e-21  Score=179.81  Aligned_cols=113  Identities=34%  Similarity=0.444  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCC------ccccc--------ccceeeeeEEEEcCccc--------------
Q 012792          289 PGALVTALVIGVHELGHILAAKSTGVELGV------PYFVP--------SWQIGSFGAITRIRNIV--------------  340 (456)
Q Consensus       289 p~aL~Ll~iL~iHElGHalaAr~~Gvkvs~------P~fIP--------~i~Lg~FGavi~~~s~~--------------  340 (456)
                      .+.+++.+++++||+||+++||++|+++..      |-+.-        .+.+.++|+++++.+..              
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            356677889999999999999999999863      21100        13466799998875421              


Q ss_pred             --cCccceeEEEEchHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHH
Q 012792          341 --SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW  418 (456)
Q Consensus       341 --~~R~alf~IAlAGPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~a  418 (456)
                        .++++++.|++|||++|+++|++++++.                                              +.++
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~~  116 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSFL  116 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHHH
Confidence              1478899999999999999998765431                                              2345


Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHhhc
Q 012792          419 AWAGLLINAINSIPAGELDGGRIAFALWG  447 (456)
Q Consensus       419 g~inLvLtafNLLPigPLDGGRIL~Allg  447 (456)
                      +++|+.+++|||+|++||||||++++++.
T Consensus       117 ~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         117 ALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            78999999999999999999999999875

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.84  E-value=4.3e-20  Score=182.38  Aligned_cols=123  Identities=26%  Similarity=0.328  Sum_probs=94.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCccc---cCccceeEEEEchHHHHH
Q 012792          282 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGF  358 (456)
Q Consensus       282 ~~l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~---~~R~alf~IAlAGPLanf  358 (456)
                      ..+...+.+.+++++++++||+||+++||++|+++..--+  .+.+.++|+++++.+..   .++++++.|++|||++|+
T Consensus       105 ~~~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nl  182 (263)
T cd06159         105 NIFIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANF  182 (263)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHH
Confidence            3344566677788899999999999999999999973100  01123478888775543   467899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCch
Q 012792          359 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  438 (456)
Q Consensus       359 llAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLDG  438 (456)
                      ++|++++++..                                             +.+.+++|+.+++|||+|++||||
T Consensus       183 vla~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDG  217 (263)
T cd06159         183 VVALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDG  217 (263)
T ss_pred             HHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCCh
Confidence            99987764321                                             224578999999999999999999


Q ss_pred             HHHHHHhhcccch
Q 012792          439 GRIAFALWGRKVF  451 (456)
Q Consensus       439 GRIL~Allgrr~~  451 (456)
                      ||++++++.....
T Consensus       218 g~il~~ll~~~~~  230 (263)
T cd06159         218 GHVFRDLLEALLR  230 (263)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999998765543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.83  E-value=5e-21  Score=179.08  Aligned_cols=134  Identities=28%  Similarity=0.355  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCC--------cc--ccc-------ccceeeeeEEE----EcCccccCccceeE
Q 012792          290 GALVTALVIGVHELGHILAAKSTGVELGV--------PY--FVP-------SWQIGSFGAIT----RIRNIVSKREDLLK  348 (456)
Q Consensus       290 ~aL~Ll~iL~iHElGHalaAr~~Gvkvs~--------P~--fIP-------~i~Lg~FGavi----~~~s~~~~R~alf~  348 (456)
                      ..+++++++.+||+||+++|+++|+++..        |+  ..|       .+.+..|||..    +.++.+++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            45567789999999999999999999863        32  122       11122577762    33444567789999


Q ss_pred             EEEchHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHH
Q 012792          349 VAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAI  428 (456)
Q Consensus       349 IAlAGPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtaf  428 (456)
                      |++|||++|++++++++++........+         ...+.                    ....+....++|+.+++|
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~--------------------l~~~~~~~~~~Ni~l~lf  134 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASF--------------------LFLMLAYGVLINLVLAVF  134 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHH--------------------HHHHHHHHHHHHHHHHHH
Confidence            9999999999999988765543321100         00011                    112355668899999999


Q ss_pred             hhcCCCCCchHHHHHHhhcccchh
Q 012792          429 NSIPAGELDGGRIAFALWGRKVFH  452 (456)
Q Consensus       429 NLLPigPLDGGRIL~Allgrr~~~  452 (456)
                      ||+|++|||||||++++++++..+
T Consensus       135 NLlPipPLDG~~il~~~l~~~~~~  158 (181)
T cd06158         135 NLLPIPPLDGSKILAALLPRRLAE  158 (181)
T ss_pred             HhCCCCCCChHHHHHHHcchhHHH
Confidence            999999999999999999887653

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.79  E-value=8.5e-19  Score=174.29  Aligned_cols=114  Identities=25%  Similarity=0.238  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeee----eEEEEcCcc---ccCccceeEEEEchHHHHHHHHH
Q 012792          290 GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSLGF  362 (456)
Q Consensus       290 ~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~F----Gavi~~~s~---~~~R~alf~IAlAGPLanfllAl  362 (456)
                      +.+++++++.+||+||+++|+++|+++.      .+.+..|    |+++++...   ..++++++.|++|||++|+++|+
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~  203 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGL  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHHHH
Confidence            4456788999999999999999999997      5444444    888877332   23566789999999999999999


Q ss_pred             HHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHHH
Q 012792          363 VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA  442 (456)
Q Consensus       363 l~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLDGGRIL  442 (456)
                      +++++.+.                                          ..+.+++++|+.+++|||+|++|||||||+
T Consensus       204 i~~~l~~~------------------------------------------~~l~~la~iNl~lavfNLlP~~pLDGg~il  241 (277)
T cd06162         204 VGYLLLIE------------------------------------------TFLKYLISLSGALAVINAVPCFALDGQWIL  241 (277)
T ss_pred             HHHHHHHH------------------------------------------HHHHHHHHHHHHHHHhhcCCCCCCChHHHH
Confidence            87654210                                          024466889999999999999999999999


Q ss_pred             HHhhcccch
Q 012792          443 FALWGRKVF  451 (456)
Q Consensus       443 ~Allgrr~~  451 (456)
                      ++++.++..
T Consensus       242 ~~ll~~~~~  250 (277)
T cd06162         242 STFLEATLV  250 (277)
T ss_pred             HHHHHHHhC
Confidence            998766544

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.77  E-value=2.1e-19  Score=166.20  Aligned_cols=127  Identities=31%  Similarity=0.401  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccCCcc--c-------cc-c----c-------ceeeeeE--------EEEcCccc
Q 012792          290 GALVTALVIGVHELGHILAAKSTGVELGVPY--F-------VP-S----W-------QIGSFGA--------ITRIRNIV  340 (456)
Q Consensus       290 ~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~--f-------IP-~----i-------~Lg~FGa--------vi~~~s~~  340 (456)
                      +.+++++++++||+||+++|+++|+++....  +       .+ .    +       ....+|+        ..+.+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            4567888999999999999999999997531  1       00 0    0       0112343        22333345


Q ss_pred             cCccceeEEEEchHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHH
Q 012792          341 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  420 (456)
Q Consensus       341 ~~R~alf~IAlAGPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~  420 (456)
                      .++++.+.|++|||++|++++++++++.........                              ......+.+.++++
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999988766443211100                              01123356889999


Q ss_pred             HHHHHHHHhhcCCCCCchHHHHHHhh
Q 012792          421 AGLLINAINSIPAGELDGGRIAFALW  446 (456)
Q Consensus       421 inLvLtafNLLPigPLDGGRIL~All  446 (456)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>TIGR00054 RIP metalloprotease RseP

Probab=99.49  E-value=9.8e-14  Score=144.71  Aligned_cols=81  Identities=26%  Similarity=0.433  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccCC------ccccc--------ccceeeeeEEEEcCcc----c----------
Q 012792          289 PGALVTALVIGVHELGHILAAKSTGVELGV------PYFVP--------SWQIGSFGAITRIRNI----V----------  340 (456)
Q Consensus       289 p~aL~Ll~iL~iHElGHalaAr~~Gvkvs~------P~fIP--------~i~Lg~FGavi~~~s~----~----------  340 (456)
                      .+.+++.+++++||+||+++||++|+++..      |-+.-        .+.+.++|+++++...    .          
T Consensus         8 ~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~   87 (420)
T TIGR00054         8 ASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDL   87 (420)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhh
Confidence            345667778999999999999999999863      21110        1346779999888311    0          


Q ss_pred             ---cCccceeEEEEchHHHHHHHHHHHHHHHH
Q 012792          341 ---SKREDLLKVAAAGPLAGFSLGFVLFLVGF  369 (456)
Q Consensus       341 ---~~R~alf~IAlAGPLanfllAll~lligl  369 (456)
                         .+.++++.|++|||++|+++|++++++.+
T Consensus        88 f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        88 FNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             hccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence               25678899999999999999998877554

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.38  E-value=3.9e-13  Score=129.95  Aligned_cols=128  Identities=26%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCcccc-------CccceeEEEEc-hHH
Q 012792          284 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVS-------KREDLLKVAAA-GPL  355 (456)
Q Consensus       284 l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~~-------~R~alf~IAlA-GPL  355 (456)
                      +..+....+.++..+..||+||...++++|.++.      .+.++.+|++...+....       .|.+...+++| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4445555555777899999999999999999885      333322444443333322       34555666777 888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 012792          356 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGE  435 (456)
Q Consensus       356 anfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigP  435 (456)
                      .|+++++++ ..  ..+...           .                    .......+...+.+|+++++|||+|++|
T Consensus       115 ~ni~la~~~-~~--~~~~~~-----------~--------------------~~~~~~~~~~la~~Nl~L~lFNLiPi~P  160 (230)
T COG1994         115 TNIALAVLG-LL--ALSLFL-----------Y--------------------HSVLFAFLAALALVNLVLALFNLLPIPP  160 (230)
T ss_pred             HHHHHHHHH-HH--hhcccc-----------c--------------------chhHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            887777664 11  111000           0                    0011123456788999999999999999


Q ss_pred             CchHHHHHHhhcccch
Q 012792          436 LDGGRIAFALWGRKVF  451 (456)
Q Consensus       436 LDGGRIL~Allgrr~~  451 (456)
                      |||||++++++.++..
T Consensus       161 LDGg~vlr~~~~~~~~  176 (230)
T COG1994         161 LDGGRVLRALLPRRYG  176 (230)
T ss_pred             CChHHHHHHHccHHHH
Confidence            9999999999887754

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.99  E-value=5.8e-10  Score=117.37  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC------c-cccc--------ccceeeeeEEEEcCcc------------
Q 012792          287 GLPGALVTALVIGVHELGHILAAKSTGVELGV------P-YFVP--------SWQIGSFGAITRIRNI------------  339 (456)
Q Consensus       287 glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~------P-~fIP--------~i~Lg~FGavi~~~s~------------  339 (456)
                      .+.+.+++.+++++||+||+++||++|+++..      | .|=-        .+.+.++|+++++...            
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~   86 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHH   86 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhh
Confidence            44466677788899999999999999999974      2 1100        1345678999876432            


Q ss_pred             ---ccCccceeEEEEchHHHHHHHHHHHHHHHHh
Q 012792          340 ---VSKREDLLKVAAAGPLAGFSLGFVLFLVGFI  370 (456)
Q Consensus       340 ---~~~R~alf~IAlAGPLanfllAll~lligl~  370 (456)
                         ..+.++++.|.+|||++|+++|++++.+.+.
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~~  120 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVFI  120 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence               1235888999999999999999988766553

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.72  E-value=4.4e-09  Score=106.49  Aligned_cols=243  Identities=15%  Similarity=0.079  Sum_probs=133.9

Q ss_pred             ccccceeeeeccccccCceEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEEecCCCCCcEEEEecCCCCCCCCCChh
Q 012792          167 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  246 (456)
Q Consensus       167 ~~Fg~dtF~~t~~~~~~~gvi~rGnLR~~~e~~y~~l~~~l~~~fGd~y~lfl~~~~~~~kPv~~v~P~~~~~p~~~~~~  246 (456)
                      .+++.++|+.....+ ...+++.|.+.......+..+...+  ..|..+         ...|+..   +  ..   .   
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~---~--v~---~---  138 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG---E--VA---P---  138 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee---e--cC---C---
Confidence            588889999999999 9999999999987766655544333  223111         1122221   0  00   0   


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccccc--cccccchHHHH---hhHHHHHHHHHHHHHH--HHHHHHHHHHcCCccCCc
Q 012792          247 EWFAAGAFGLVTVFTLLLRNVPALQSNL--LSTFDNLNLLT---NGLPGALVTALVIGVH--ELGHILAAKSTGVELGVP  319 (456)
Q Consensus       247 ~~~~~~ll~l~Tl~T~~~~~~~~l~~~~--~~~~~~~~~l~---~glp~aL~Ll~iL~iH--ElGHalaAr~~Gvkvs~P  319 (456)
                       .+++.       .+.+..|.-.+..+-  ...+++.....   .+.++.  .+.+.+.|  +..|+.+++.++.....|
T Consensus       139 -~s~a~-------~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~P  208 (375)
T COG0750         139 -KSAAA-------LAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFN--LLTILVIRLDGEAHAVAAEIIKSLGLTP  208 (375)
T ss_pred             -CCHHH-------HcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCccc--ceEEEEEeccceeeeccccceeeEeeec
Confidence             01111       112222222222211  11111111111   122211  34566788  999999999888888889


Q ss_pred             ccccccceeeeeEEEE--cCccccC-----ccceeEEEEchHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhhhhhh
Q 012792          320 YFVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLA  392 (456)
Q Consensus       320 ~fIP~i~Lg~FGavi~--~~s~~~~-----R~alf~IAlAGPLanfllAll~lligl~l~~~~~~~l~v~~~~f~~S~L~  392 (456)
                      +++| ...+..+..++  .....++     ++...++..++++. ..+.-...++.+.+....    ......+..+.+.
T Consensus       209 ~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~-~~v~~~~~~~~~~~~~l~----~~~~~~~~~~~l~  282 (375)
T COG0750         209 VVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVG-LAVEKTGRLVKLTLKMLK----KLITGDLSLKNLS  282 (375)
T ss_pred             ceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHH-HHHHHHHHHHHHHHHHHH----Hheeccccccccc
Confidence            8776 44444544432  2233333     77889999999999 333333333333221000    0001111222233


Q ss_pred             hhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhhcccc
Q 012792          393 GGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKV  450 (456)
Q Consensus       393 g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLDGGRIL~Allgrr~  450 (456)
                      |.+.....+....  .....+++.+++|+|+.++++||+|+++|||||++++++.+..
T Consensus       283 Gpi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         283 GPIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             CceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            2222221221111  1235689999999999999999999999999999999877654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.48  E-value=0.00031  Score=67.09  Aligned_cols=66  Identities=30%  Similarity=0.264  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCccCCcccccccceee-eeEEEEcCccccCccceeEEEEchHHHHHHHHHHHHHHH
Q 012792          295 ALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  368 (456)
Q Consensus       295 l~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~-FGavi~~~s~~~~R~alf~IAlAGPLanfllAll~llig  368 (456)
                      ++...+||+||+++|...|-++.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        22 ~l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   22 LLVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            34588999999999999999998      555544 356666655  5566788999999999999887766655

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.42  E-value=0.00012  Score=77.41  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhh
Q 012792          413 NPLVIWAWAGLLINAINSIPAGELDGGRIAFALW  446 (456)
Q Consensus       413 hpL~~ag~inLvLtafNLLPigPLDGGRIL~All  446 (456)
                      ..+.+++.+++-++++||||+|.|||||++..++
T Consensus       377 ~~l~~~a~iSi~Lgi~NLlPiP~LDGG~l~f~~~  410 (449)
T PRK10779        377 YYLMFLALISVNLGIINLFPLPVLDGGHLLFLAI  410 (449)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHH
Confidence            4677889999999999999999999999998864

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0028  Score=66.70  Aligned_cols=152  Identities=26%  Similarity=0.294  Sum_probs=84.7

Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCcccc---CccceeEEEEchHHHHHHH
Q 012792          285 TNGLPGA-LVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVS---KREDLLKVAAAGPLAGFSL  360 (456)
Q Consensus       285 ~~glp~a-L~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~~---~R~alf~IAlAGPLanfll  360 (456)
                      +.+++|. ..+++...+||+||+|||.+-|+++.-  |=-.+...--||++.+....-   +.-..+.|--||-.=||++
T Consensus       120 l~~I~yf~t~lvi~~vvHElGHalAA~segV~vng--fgIfi~aiyPgafvdl~~dhLqsl~~fr~LrIfcAGIWHNfvf  197 (484)
T KOG2921|consen  120 LSGIAYFLTSLVITVVVHELGHALAAASEGVQVNG--FGIFIAAIYPGAFVDLDNDHLQSLPSFRALRIFCAGIWHNFVF  197 (484)
T ss_pred             cccchhhhhhHHHHHHHHHhhHHHHHHhcCceeee--eEEEEEEEcCchhhhhhhhHHhhcchHHHHHHHhhhHHHHHHH
Confidence            3455554 346678899999999999999999971  100111122366665543211   1234567899999999999


Q ss_pred             HHHHHHHHHhcC----CCC--CCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCC
Q 012792          361 GFVLFLVGFIFP----PSD--GIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAG  434 (456)
Q Consensus       361 All~lligl~l~----~~~--~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPig  434 (456)
                      |+++.+...+++    +..  |.++.+ ...-..|.+.|.. -+..||.+.+-.+..+|-  ..-|.-.+-+.+|+=|-.
T Consensus       198 allc~lal~~lpViLsPfya~g~gV~V-tev~~~Spl~gpr-GL~vgdvitsldgcpV~~--v~dW~ecl~tsl~~~ngy  273 (484)
T KOG2921|consen  198 ALLCVLALFLLPVILSPFYAHGEGVTV-TEVPSVSPLFGPR-GLSVGDVITSLDGCPVHK--VSDWLECLATSLDKENGY  273 (484)
T ss_pred             HHHHHHHHHhhhHhhchhhhcCceEEE-EeccccCCCcCcc-cCCccceEEecCCcccCC--HHHHHHHHHhhcccCCCe
Confidence            998876655432    210  111110 0011123333322 234555544433444442  345666677778887777


Q ss_pred             CCchHHHH
Q 012792          435 ELDGGRIA  442 (456)
Q Consensus       435 PLDGGRIL  442 (456)
                      --|+.-+.
T Consensus       274 cvsas~vq  281 (484)
T KOG2921|consen  274 CVSASLVQ  281 (484)
T ss_pred             eecHHHHh
Confidence            76665443

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.13  E-value=0.017  Score=58.79  Aligned_cols=82  Identities=28%  Similarity=0.404  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcc--ccc-------------ccceeeeeEEEEcCcccc-----------
Q 012792          288 LPGALVTALVIGVHELGHILAAKSTGVELGVPY--FVP-------------SWQIGSFGAITRIRNIVS-----------  341 (456)
Q Consensus       288 lp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~--fIP-------------~i~Lg~FGavi~~~s~~~-----------  341 (456)
                      +.+.+.+...+.+||+||+|.||++|+++....  |-|             .+...+.|+++.+.....           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            345556677889999999999999999997421  001             011233444432211110           


Q ss_pred             -------CccceeEEEEchHHHHHHHHHHHHHHHH
Q 012792          342 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  369 (456)
Q Consensus       342 -------~R~alf~IAlAGPLanfllAll~lligl  369 (456)
                             +-+..+.+.+|||++|++.++...+...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   1133678999999999998877766554

>PF11667 DUF3267: Protein of unknown function (DUF3267); InterPro: IPR021683 This family of proteins has no known function

Probab=84.15  E-value=0.63  Score=40.26  Aligned_cols=68  Identities=22%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCccCCcccccccce-eeeeEEEEcCccccCccceeEEEEchHHHHHHHHHHHHHHHHh
Q 012792          295 ALVIGVHELGHILAAKSTGVELGVPYFVPSWQI-GSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFI  370 (456)
Q Consensus       295 l~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~L-g~FGavi~~~s~~~~R~alf~IAlAGPLanfllAll~lligl~  370 (456)
                      ++.+.+||+-|++..+.+|.+...     .+.. +..+..-...+ .+-.|..+.+...-|+  ++++++.++++..
T Consensus         4 ~~~~~~HEliH~l~~~~~~~~~~~-----~~g~~~~~~~~~~~~~-~~~sk~~~~i~~l~P~--ivl~~~~~~~~~~   72 (111)
T PF11667_consen    4 IVLIPLHELIHGLFFKLFGKKPKV-----KFGFKWKLGPFYATCN-EPISKWRFIIILLAPF--IVLTILPLILGFF   72 (111)
T ss_pred             EeeHHHHHHHHHHHHHHhCCCCce-----EEEEEeeeEEEEEecC-cEEeHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            345689999999999999996531     1111 11122221222 2334456666666675  4555555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 42/176 (23%)

Query: 274 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 333
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 334 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 393
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 394 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRK 449
                                L   +   L++   N IPA  +DGGRI  A+  +K
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKK 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 54/239 (22%)

Query: 123 DTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIR------IPKETIDILKDQVFGFDTFFV 176
           D + G       ++              D ++       +      IL  +    D   +
Sbjct: 8   DFETGEHQYQYKDIL---------SVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIM 56

Query: 177 TNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLL--VNPEDDKPVAVVVP 234
           +         LF   L  +  +  +K    ++      YK FL+  +  E  +P      
Sbjct: 57  SKDAVSGTLRLF-WTLLSKQEEMVQKF---VEEVLRINYK-FLMSPIKTEQRQP-----S 106

Query: 235 RKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNGL 288
             T          +          VF     NV        L+  LL      N+L +G+
Sbjct: 107 MMTRMYIEQRDRLY------NDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 289 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLL 347
            G+  T + + V          S  V+  + + +  W + +         ++   + LL
Sbjct: 159 LGSGKTWVALDV--------CLSYKVQCKMDFKI-FW-L-NLKNCNSPETVLEMLQKLL 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.88

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=2.3e-23  Score=199.28  Aligned_cols=126  Identities=29%  Similarity=0.396  Sum_probs=98.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcccccccceeeeeEEEEcCccccCccceeEEEEchHHHHHHHHHH
Q 012792          284 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFV  363 (456)
Q Consensus       284 l~~glp~aL~Ll~iL~iHElGHalaAr~~Gvkvs~P~fIP~i~Lg~FGavi~~~s~~~~R~alf~IAlAGPLanfllAll  363 (456)
                      +..+ .+++++++++++||+||+++||++|++++.      +.+.+||+++++++.  +++++++|++|||++|+++|++
T Consensus        38 ~~~g-~~~l~l~~~v~~HElgH~~~A~~~G~~~~~------i~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~  108 (224)
T 3b4r_A           38 IFWA-VLFILLFVSVVLHELGHSYVAKKYGVKIEK------ILLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIV  108 (224)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------EEECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCcccc------EEEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHH
Confidence            3444 677888999999999999999999999984      455558888887653  4588999999999999999988


Q ss_pred             HHHHHHhcCCCCCCcccccccchhhhhhhhhhhhhhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHHHH
Q 012792          364 LFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAF  443 (456)
Q Consensus       364 ~lligl~l~~~~~~~l~v~~~~f~~S~L~g~la~l~LG~~l~~g~~i~lhpL~~ag~inLvLtafNLLPigPLDGGRIL~  443 (456)
                      ++++....+..                           .      .. ...+.+++|+|+++++|||+|++|||||||++
T Consensus       109 ~~~~~~~~~~~---------------------------~------~~-~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~  154 (224)
T 3b4r_A          109 LLIVSQFFDIN---------------------------I------NG-YPLLYTLSLLNLMLGGFNLIPAFPMDGGRILR  154 (224)
T ss_dssp             HHHHTTTCCCE---------------------------E------TT-EEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHH
T ss_pred             HHHHHHHccCc---------------------------c------hH-HHHHHHHHHHHHHHHHHHccCCCCCCHHHHHH
Confidence            76653221100                           0      00 12355689999999999999999999999999


Q ss_pred             Hhhcccchh
Q 012792          444 ALWGRKVFH  452 (456)
Q Consensus       444 Allgrr~~~  452 (456)
                      ++++++..+
T Consensus       155 ~ll~~~~~~  163 (224)
T 3b4r_A          155 AILSKKYGY  163 (224)
T ss_dssp             HHHHHHHCH
T ss_pred             HHhcccccH
Confidence            998887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00