Citrus Sinensis ID: 012803
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECP7 | 470 | Sugar transporter ERD6-li | yes | no | 0.938 | 0.910 | 0.717 | 1e-179 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.916 | 0.902 | 0.584 | 1e-151 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.940 | 0.890 | 0.569 | 1e-146 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.938 | 0.910 | 0.540 | 1e-134 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.925 | 0.897 | 0.529 | 1e-130 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.967 | 0.922 | 0.496 | 1e-130 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.975 | 0.897 | 0.481 | 1e-128 | |
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.975 | 0.952 | 0.475 | 1e-126 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.969 | 0.932 | 0.495 | 1e-125 | |
| Q93Z80 | 458 | Sugar transporter ERD6-li | no | no | 0.940 | 0.936 | 0.492 | 1e-124 |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/446 (71%), Positives = 367/446 (82%), Gaps = 18/446 (4%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E+ SA+ T+ ++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILT
Sbjct: 20 ENQDSSATITTTLLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILT 79
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
IGAMIGA MSG+IAD IGRR TMGFS++ CI+GW+ I SK A WLD+GR LVGYGMG+
Sbjct: 80 IGAMIGAAMSGRIADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVF 139
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
S+VVPVYIAEITPK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++
Sbjct: 140 SFVVPVYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMM 199
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
GL IPESPRWLAK GK E E ALQRLRG ADIS E+ EI++YT L LSEG I++L
Sbjct: 200 GLFVIPESPRWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDL 259
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLG 324
FQ +YA SL+VGVGLMVLQQFGGVNGIAFYASSIF SAG S IGMIAMVV+QIPMT LG
Sbjct: 260 FQPQYAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLG 319
Query: 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFSL 366
VLLMDKSGRRPLLL+SA GTC+GC L LSF Q VYTGSFSL
Sbjct: 320 VLLMDKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSL 379
Query: 367 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426
GMGGIPWVIMSE+FPI++KGSAGSLVT+VSW+GSWIISFTFNFLM W+ GTF+ F+ +C
Sbjct: 380 GMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVC 439
Query: 427 SLTVLFVAKLVPETKGRTLEEIQASM 452
TV+FVAKLVPETKGRTLEEIQ S+
Sbjct: 440 GATVIFVAKLVPETKGRTLEEIQYSI 465
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/436 (58%), Positives = 325/436 (74%), Gaps = 18/436 (4%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAVCGS+ FGS GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG
Sbjct: 28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD +GR+G M S C++GW+ I+F+K LDLGRL GYGMG SYVVP++IAEI
Sbjct: 88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RG TT++Q++IC GVS++++IG + WR+LALIG IPC +GL FIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207
Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E EAAL++LRG ADISEEAAEI++Y ETLERL + +L+LFQR+Y S+++
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267
Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL 336
GLMV QQFGG+NGI FY SSIF AGF +GMI V+Q+ +T L ++D++GR+PL
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPL 327
Query: 337 LLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFSLGMGGIPWVIMSE 378
LLVSA G +GCL+AA+SF + VY GSFS GMG +PWV+MSE
Sbjct: 328 LLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMPWVVMSE 387
Query: 379 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 438
+FPIN+KG AG + TLV+W G+W +S+TFNFLM WSS GTF ++AI +L ++FV +VP
Sbjct: 388 IFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVP 447
Query: 439 ETKGRTLEEIQASMNP 454
ETKG+TLE+IQA +NP
Sbjct: 448 ETKGKTLEQIQAIVNP 463
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/448 (56%), Positives = 328/448 (73%), Gaps = 19/448 (4%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E S + + V+ STFVAVCGS+ FGS +GYS+P QS I DL LS+AE+S+FGSILT
Sbjct: 32 EKESENNESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILT 91
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
IGAM+GA+MSGKI+D+ GR+G M S CI GW+ + F+K A LD+GR GYG+G+
Sbjct: 92 IGAMLGAVMSGKISDFSGRKGAMRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVF 151
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
SYVVPVYIAEI+PKNLRGG TT++QLMI IG S+++LIG+ ++W+ LAL G PC+V L
Sbjct: 152 SYVVPVYIAEISPKNLRGGLTTLNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLF 211
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
GLCFIPESPRWLAK G E ALQ+LRG DADI+ EA I+ + LE L + I +L
Sbjct: 212 GLCFIPESPRWLAKAGHEKEFRVALQKLRGKDADITNEADGIQVSIQALEILPKARIQDL 271
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLL 323
+KY S+I+GV LMV QQF G+NGI FYAS F+ AGF SG +G IA+ +Q+P+T+L
Sbjct: 272 VSKKYGRSVIIGVSLMVFQQFVGINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVL 331
Query: 324 GVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFS 365
G +L+DKSGRRPL+++SA G LGC+L SFL + +Y +FS
Sbjct: 332 GTILIDKSGRRPLIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLIYVAAFS 391
Query: 366 LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAI 425
+GMG +PWVIMSE+FPIN+KG AGSLV LV+W G+W +S+TFNFLM WSS GTF+ +SA
Sbjct: 392 IGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAF 451
Query: 426 CSLTVLFVAKLVPETKGRTLEEIQASMN 453
+ T++FVAK+VPETKG+TLEEIQA +
Sbjct: 452 AAATIIFVAKMVPETKGKTLEEIQACIR 479
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/448 (54%), Positives = 314/448 (70%), Gaps = 20/448 (4%)
Query: 25 ESGSG-SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSIL 83
E+GS S A+ V LST +AVCGSY FG+ +GYS+P Q GI +L LS +++S+FGSIL
Sbjct: 22 ENGSDVSEEASWMVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSIL 81
Query: 84 TIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143
+GA++GAI SGKI+D+IGR+G M S ++ IGW+II +K LD GR L GYG G
Sbjct: 82 NMGAVLGAITSGKISDFIGRKGAMRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGT 141
Query: 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQL 203
LS+VVPV+IAEI+P+ LRG T++QL I IG++ +LIGA +NWR LAL G PC+V
Sbjct: 142 LSFVVPVFIAEISPRKLRGALATLNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLF 201
Query: 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263
G FIPESPRWL G+ + E ALQ+LRG A+I+ EA EI+EY +L L + +++
Sbjct: 202 FGTWFIPESPRWLEMVGRHSDFEIALQKLRGPQANITREAGEIQEYLASLAHLPKATLMD 261
Query: 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLL 323
L +K +IVGVGLM QQF G+NG+ FYA IF+SAG S ++G I + Q+ +T L
Sbjct: 262 LIDKKNIRFVIVGVGLMFFQQFVGINGVIFYAQQIFVSAGASPTLGSILYSIEQVVLTAL 321
Query: 324 G-VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------------------VYTGSF 364
G LL+D+ GRRPLL+ SA G +GCLL SFL + VY GSF
Sbjct: 322 GATLLIDRLGRRPLLMASAVGMLIGCLLIGNSFLLKAHGLALDIIPALAVSGVLVYIGSF 381
Query: 365 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSA 424
S+GMG IPWVIMSE+FPIN+KG+AG LVT+V+WL SW++SFTFNFLM WS GTF+ +
Sbjct: 382 SIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGG 441
Query: 425 ICSLTVLFVAKLVPETKGRTLEEIQASM 452
+C L ++F+AKLVPETKGRTLEEIQA M
Sbjct: 442 VCVLAIIFIAKLVPETKGRTLEEIQAMM 469
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/440 (52%), Positives = 313/440 (71%), Gaps = 18/440 (4%)
Query: 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIM 93
T+ V+ STFV+VCGS+ FG A GYSS AQ+GI NDLGLSVA+YS+FGSI+T G MIGAI
Sbjct: 29 TAVVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIF 88
Query: 94 SGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
SGK+AD +GR+GTM F+ I CI GWV + +K + WLD+GRL G+ +GLLSYV+PVYIA
Sbjct: 89 SGKVADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIA 148
Query: 154 EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESP 213
EITPK++RG F +QLM G+S+ Y+IG F++WR LALIG IPC +Q++ L FIPESP
Sbjct: 149 EITPKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESP 208
Query: 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSL 273
R L K G E A+LQ LRG DADISEEA I+E + + +++LFQR+YA S+
Sbjct: 209 RLLGKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSV 268
Query: 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGR 333
++GVGLM+LQQ G +G+ +Y S+F GF SIG + + VI IP LLG++L++K GR
Sbjct: 269 VIGVGLMLLQQLSGSSGLMYYVGSVFDKGGFPSSIGSMILAVIMIPKALLGLILVEKMGR 328
Query: 334 RPLLLVSAAGTCLGC-------------LLAALSFLFQV-----YTGSFSLGMGGIPWVI 375
RPLLL S G C +L L+ +F + SF++GMGG+PW+I
Sbjct: 329 RPLLLASTGGMCFFSLLLSFSFCFRSYGMLDELTPIFTCIGVVGFISSFAVGMGGLPWII 388
Query: 376 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAK 435
MSE+FP+N+K SAG+LVTL +W WI++F +NF+++W+++GTF F IC ++F+
Sbjct: 389 MSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFIYA 448
Query: 436 LVPETKGRTLEEIQASMNPF 455
+VPETKGRTLE+IQAS+ F
Sbjct: 449 MVPETKGRTLEDIQASLTDF 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/469 (49%), Positives = 325/469 (69%), Gaps = 28/469 (5%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E + LL+ K+Q + T+ V+LSTF+AVCGS+ FG ++GY+S A
Sbjct: 10 ERSIEERLLQLKNQ----------NDDSECRITACVILSTFIAVCGSFSFGVSLGYTSGA 59
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
+ GI DL LS+A++S F S+ T+GA IGA+ SGK+A +GRR TM SD++CIIGW I
Sbjct: 60 EIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSI 119
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
F+K WL+ GR+ G G+GL+SYVVPVYIAEI+PK++RG FT +QL+ G++M Y
Sbjct: 120 AFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYF 179
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
G FLNWRILAL+G +PC +Q+IGL F+PESPRWLAK G E E +L RLRG +ADIS
Sbjct: 180 SGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLLRLRGGNADISR 239
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
EA++I T+ +E S+ +LFQRKY ++L+VG+GLM++QQF G + + YAS+I
Sbjct: 240 EASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFSGSSAVLSYASTILRK 299
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ--- 358
AGFS +IG + + IP ++GV+L+DK GRRPLLL S +G C+ +L ++F Q
Sbjct: 300 AGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPLLLTSVSGMCITSMLIGVAFTLQKMQ 359
Query: 359 ---------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
+Y G++++G+GG+PWVIMSE+FP+N+K +AGS+VTLVSW S I+
Sbjct: 360 LLPELTPVFTFICVTLYIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIV 419
Query: 404 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 452
++ FNFL++WS+ GTF+ F A+ L +LF+ LVPETKG +LEEIQAS+
Sbjct: 420 TYAFNFLLEWSTQGTFYVFGAVGGLALLFIWLLVPETKGLSLEEIQASL 468
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 322/471 (68%), Gaps = 26/471 (5%)
Query: 1 MEEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSP 60
+E GLS +E + ++ G T++V LSTFVAV GS+ G +G+SS
Sbjct: 30 LESGLSRKSPREVKK--------PQNDDGECRVTASVFLSTFVAVSGSFCTGCGVGFSSG 81
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK+AD +GR+ TM F + CI GW+
Sbjct: 82 AQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLC 141
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
+ ++ A WLD GRLL+G G+G+ SYV+PVYIAEI PK++RG F +QLM G+S+ +
Sbjct: 142 VALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFF 201
Query: 181 LIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS 240
+IG F+ WR+L ++G +PC+ + L FIPESPRWLAK G+ E ++LQRLRG+D DIS
Sbjct: 202 IIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQRLRGSDVDIS 261
Query: 241 EEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300
EA IR+ + E E + ELFQR+YA+ LI+GVGLM LQQ G +G+ +YASS+F
Sbjct: 262 REANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGVTYYASSLFN 321
Query: 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ-- 358
GF +IG + I +P +L +L+DK GRR LL+ S + L LL ++S+ FQ
Sbjct: 322 KGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTLLMASCSAMGLSALLLSVSYGFQSF 381
Query: 359 --------VYTG--------SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 402
++T SF++GMGG+PW+IM+E+FP+N+K SAG+LVT+ +WL WI
Sbjct: 382 GILPELTPIFTCIGVLGHIVSFAMGMGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWI 441
Query: 403 ISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMN 453
I++TFNF+++W+++G F FS + + +++F+ LVPETKGR+LEEIQA +N
Sbjct: 442 ITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVPETKGRSLEEIQALLN 492
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 318/463 (68%), Gaps = 18/463 (3%)
Query: 9 LLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND 68
+++E+++ G ++ T+ V+LSTFVAVC ++ +G A GY+S A++ I +
Sbjct: 2 VVEEENRSMEEGLLQHQNDRDDRRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKE 61
Query: 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128
L LS+A++S FGS L +G +GA+ SG++A +GRR T+ D C+ GW+ I F+K +
Sbjct: 62 LDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVF 121
Query: 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNW 188
WLDLGR+ +G G+GL+SYVVPVYIAEITPK++RG FT +QL+ GVS+ Y G +NW
Sbjct: 122 WLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINW 181
Query: 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248
R++A+IG IPC++Q IG+ FIPESPRWLAK E E++L RLRG D D+S EAAEI+
Sbjct: 182 RVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQV 241
Query: 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSI 308
T+ LE S+ ++FQ+KY +L+VG+GLM++QQ G +GI +Y+++IF AGFS +
Sbjct: 242 MTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERL 301
Query: 309 GMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ---------- 358
G + V IP L+G++L+D+ GRRPLLL SA G +G LL +SF Q
Sbjct: 302 GSMIFGVFVIPKALVGLILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPELIP 361
Query: 359 --------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410
VY G F+ G+GG+PWVIMSE+FPIN+K SAG++V L SW W +S+ FNF+
Sbjct: 362 IFVFVNILVYFGCFAFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFM 421
Query: 411 MKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMN 453
+WS+ GTF+ F+A+ ++ +F+ LVPETKG++LEE+QAS+
Sbjct: 422 FEWSAQGTFYIFAAVGGMSFIFIWMLVPETKGQSLEELQASLT 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/472 (49%), Positives = 319/472 (67%), Gaps = 30/472 (6%)
Query: 1 MEEGLS--SSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYS 58
MEEG S LL+ K++ + T+ V+LSTFVAVCGS+ FG A GY+
Sbjct: 3 MEEGRSIEEGLLQLKNK----------NDDSECRITACVILSTFVAVCGSFSFGVATGYT 52
Query: 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118
S A++G+ DL LS+A++S FGS T+GA IGA+ G +A IGRRGTM SD +CI GW
Sbjct: 53 SGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGTMWVSDFLCITGW 112
Query: 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM 178
+ I F+K L+ GR++ G G GL SYVVPVYIAEITPK++RG FT +QL+ G++M
Sbjct: 113 LSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTFSNQLLQNAGLAM 172
Query: 179 TYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADAD 238
Y G F+ WR LAL+G +PC +Q+IGL F+PESPRWLAK G E E +L RLRG DAD
Sbjct: 173 IYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELENSLFRLRGRDAD 232
Query: 239 ISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI 298
IS EA+EI+ T+ +E S+ +LFQRKY ++L+VG+GLM++QQF G + YAS+I
Sbjct: 233 ISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFSGSAAVISYASTI 292
Query: 299 FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ 358
F AGFS +IG + + IP ++G++L+DK GRRPLL+ SA G + C+L ++F Q
Sbjct: 293 FRKAGFSVAIGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQ 352
Query: 359 ------------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 400
+Y ++++G+GG+PWVIMSE+FPIN+K +AGS+VTLVS+ S
Sbjct: 353 KMQLLSELTPILSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSS 412
Query: 401 WIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 452
I+++ FNFL +WS+ GTFF F+ I +LF+ LVPETKG +LEEIQ S+
Sbjct: 413 SIVTYAFNFLFEWSTQGTFFIFAGIGGAALLFIWLLVPETKGLSLEEIQVSL 464
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/447 (49%), Positives = 309/447 (69%), Gaps = 18/447 (4%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E+ T+ V+LSTFVAVC S+ +G A GY+S A++ I +L LS+A++S FGS L
Sbjct: 9 ENDRDDRRITACVILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLN 68
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G +GA+ SG++A +GRR T+ D+ CI GW+ I F+K WLDLGR+ +G G+GL
Sbjct: 69 LGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLT 128
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLI 204
SYVVPVYIAEITPK++RG F+ L+ G+S+ Y G +NWR+LA+IG +PC + +I
Sbjct: 129 SYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVI 188
Query: 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILEL 264
G+ FIPESPRWLAK G E E +L RLRG DAD+S+EAAEI+ T+ LE S+ ++
Sbjct: 189 GIYFIPESPRWLAKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDM 248
Query: 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLG 324
FQ+KY +L+VG+GLM++QQ G +GI +Y+++IF AGFS +G + V IP L+G
Sbjct: 249 FQKKYRRTLVVGIGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVG 308
Query: 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFSL 366
++L+D+ GRRPLLL SA G +G LL +SF Q VY G F++
Sbjct: 309 LILVDRWGRRPLLLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINILVYFGFFAI 368
Query: 367 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426
G+GG+PW+IMSE+FPIN+K SAGS+V L SW W +S+ FNF+ +WS+ GTF+ F+ +
Sbjct: 369 GIGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVG 428
Query: 427 SLTVLFVAKLVPETKGRTLEEIQASMN 453
L++LF+ LVPETKG++LEE+QAS+
Sbjct: 429 GLSLLFIWMLVPETKGQSLEELQASLT 455
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| 224125374 | 442 | predicted protein [Populus trichocarpa] | 0.921 | 0.950 | 0.826 | 0.0 | |
| 255542520 | 488 | sugar transporter, putative [Ricinus com | 0.929 | 0.868 | 0.805 | 0.0 | |
| 298205031 | 517 | unnamed protein product [Vitis vinifera] | 1.0 | 0.882 | 0.722 | 0.0 | |
| 225451069 | 488 | PREDICTED: putative ERD6-like transporte | 1.0 | 0.934 | 0.722 | 0.0 | |
| 356504068 | 486 | PREDICTED: sugar transporter ERD6-like 5 | 0.986 | 0.925 | 0.713 | 0.0 | |
| 449435707 | 479 | PREDICTED: sugar transporter ERD6-like 5 | 0.991 | 0.943 | 0.684 | 0.0 | |
| 449485745 | 479 | PREDICTED: sugar transporter ERD6-like 5 | 0.991 | 0.943 | 0.682 | 0.0 | |
| 124361039 | 481 | General substrate transporter; Sugar tra | 0.938 | 0.889 | 0.713 | 0.0 | |
| 357512085 | 495 | Sugar transporter ERD6, putative [Medica | 0.938 | 0.864 | 0.689 | 1e-180 | |
| 356571144 | 478 | PREDICTED: sugar transporter ERD6-like 5 | 0.995 | 0.949 | 0.672 | 1e-180 |
| >gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/438 (82%), Positives = 388/438 (88%), Gaps = 18/438 (4%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
VVLST VAV GSYVFGSAIGYSSP QSGI DLGLSVAEYSLFGSILTIGAMIGAIMSG+
Sbjct: 2 VVLSTLVAVSGSYVFGSAIGYSSPTQSGIMEDLGLSVAEYSLFGSILTIGAMIGAIMSGR 61
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IADYIGRRGTMGFS+I+CIIGW++I FSKA+WWLD+GRLLVGYGMGLLSYV+P+YIAEIT
Sbjct: 62 IADYIGRRGTMGFSEIICIIGWMLITFSKASWWLDVGRLLVGYGMGLLSYVIPIYIAEIT 121
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PKNLRGGFTTVHQLMIC GVS+TYLIGAF++WR LALIGTIPC+VQ++GL FIPESPRWL
Sbjct: 122 PKNLRGGFTTVHQLMICCGVSITYLIGAFMSWRSLALIGTIPCIVQIVGLFFIPESPRWL 181
Query: 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+G E E ALQ LRG +ADIS+EAAEIR+YTET+ +LSE I ELFQ KYAHSLIVG
Sbjct: 182 AKIGQGKECEVALQCLRGHNADISDEAAEIRDYTETILQLSEASIFELFQWKYAHSLIVG 241
Query: 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVV+QIPMT LGV+LMD SGRRPL
Sbjct: 242 VGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVVQIPMTALGVVLMDISGRRPL 301
Query: 337 LLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFSLGMGGIPWVIMSE 378
L+VSAAGTCLGC LAALSFL Q +YTGSFSLGMGGIPWVIMSE
Sbjct: 302 LMVSAAGTCLGCFLAALSFLLQYLNKSVAVSPFLALFGVLIYTGSFSLGMGGIPWVIMSE 361
Query: 379 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 438
VFPIN KGSAGSLVTLVSWLGSWIIS+ FNFLM WSS GTFF FS IC LTVLFVAKLVP
Sbjct: 362 VFPINTKGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICGLTVLFVAKLVP 421
Query: 439 ETKGRTLEEIQASMNPFS 456
ETKGRTLEEIQASMNP S
Sbjct: 422 ETKGRTLEEIQASMNPLS 439
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/442 (80%), Positives = 382/442 (86%), Gaps = 18/442 (4%)
Query: 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAI 92
AT VV+ST +AV GSYVFGSA+GYSSP QSGI DL LSVAEYSLFGSILTIGAMIGAI
Sbjct: 44 ATLVVVMSTLIAVSGSYVFGSAVGYSSPTQSGIMQDLDLSVAEYSLFGSILTIGAMIGAI 103
Query: 93 MSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152
MSG+IADYIGRRGTMGFS+I CIIGW+ I FSK + WLD+GRLLVGYGMGLLSYVVPVYI
Sbjct: 104 MSGRIADYIGRRGTMGFSEIFCIIGWLAIAFSKVSLWLDVGRLLVGYGMGLLSYVVPVYI 163
Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPES 212
AEITPKNLRGGFTTVHQ MIC GVS+TYLIGAF++WR LALIGTIPCL+QL+GL IPES
Sbjct: 164 AEITPKNLRGGFTTVHQFMICCGVSVTYLIGAFISWRTLALIGTIPCLIQLLGLFLIPES 223
Query: 213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272
PRWLAK G+ E EAALQRLRG + DIS EAA+IR+YTE L++ SE I ELFQ KYAHS
Sbjct: 224 PRWLAKIGRLKECEAALQRLRGGNTDISGEAADIRDYTEFLQQHSEASIFELFQWKYAHS 283
Query: 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG 332
LIVGVGLMVLQQFGGVNG+AFYASSIFISAGFSGSIG IAMVV+Q+PMT LGVLLMD SG
Sbjct: 284 LIVGVGLMVLQQFGGVNGVAFYASSIFISAGFSGSIGTIAMVVVQVPMTALGVLLMDISG 343
Query: 333 RRPLLLVSAAGTCLGCLLAALSFLFQ------------------VYTGSFSLGMGGIPWV 374
RRPLLLVSAAGTCLGCLLAA+SFL Q +YTGSFSLGMGGIPWV
Sbjct: 344 RRPLLLVSAAGTCLGCLLAAMSFLLQDLHTWMNFSPFLALTGVLIYTGSFSLGMGGIPWV 403
Query: 375 IMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVA 434
IMSEVFPINMKGSAGSLVTLVSWLGSWIIS+ FNFLM WSS GTF FS+IC LTVLFVA
Sbjct: 404 IMSEVFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMTWSSAGTFLIFSSICGLTVLFVA 463
Query: 435 KLVPETKGRTLEEIQASMNPFS 456
KLVPETKGRTLEEIQASMNP S
Sbjct: 464 KLVPETKGRTLEEIQASMNPVS 485
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/475 (72%), Positives = 392/475 (82%), Gaps = 19/475 (4%)
Query: 1 MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
+EEG LSS L+ G S G G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 35 IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 94
Query: 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 95 PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 154
Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
+VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 155 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 214
Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
+L+G +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+ + E ALQRLRG A I
Sbjct: 215 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 274
Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
S+EAAEI++Y+ETL+RLSE IL+LFQ YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 275 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 334
Query: 300 ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ- 358
+SAGFSG +G IAMV +QIPMT LG +LMDKSGRRPLLL SAAGTCLGC +SFL Q
Sbjct: 335 VSAGFSGRVGSIAMVAVQIPMTTLGTILMDKSGRRPLLLASAAGTCLGCFFVGISFLLQG 394
Query: 359 -----------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 401
+Y G+FSLGMGGIPWVIMSE+FPINMKGSAGSLVTLVSWLGSW
Sbjct: 395 LQGWKELGPIFALLGVLIYDGAFSLGMGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSW 454
Query: 402 IISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
IIS+ FNFLMKWSS GTFF FS+IC +TVLFVAKLVPETKGRTLEEIQASMNP S
Sbjct: 455 IISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGRTLEEIQASMNPLS 509
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/475 (72%), Positives = 392/475 (82%), Gaps = 19/475 (4%)
Query: 1 MEEG-LSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSS 59
+EEG LSS L+ G S G G +SATS +VLST +AVCGSYVFG+A+GYSS
Sbjct: 6 IEEGQLSSPLIVADKPCENGCSGDGHEEMGGSSATSVLVLSTLIAVCGSYVFGTAVGYSS 65
Query: 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV 119
PA+SGI ++LGLS+AEYSLFGSILTIGAM+GAI+SG+IAD IGRRG MGFS++ CI+GW+
Sbjct: 66 PAESGIMDELGLSLAEYSLFGSILTIGAMLGAIVSGRIADLIGRRGAMGFSEVFCIMGWL 125
Query: 120 IIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179
+VFSK AWWLD GRL +G GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC G S+T
Sbjct: 126 AVVFSKDAWWLDFGRLSIGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGSSIT 185
Query: 180 YLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADI 239
+L+G +NWRILALIGTIPCL+Q++GL FIPESPRWLA++G+ + E ALQRLRG A I
Sbjct: 186 FLLGTLVNWRILALIGTIPCLIQIVGLPFIPESPRWLARSGRWQDCEDALQRLRGEGAII 245
Query: 240 SEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299
S+EAAEI++Y+ETL+RLSE IL+LFQ YA SLIVGVGLMVLQQFGGVN I FYAS+IF
Sbjct: 246 SQEAAEIKDYSETLQRLSEATILDLFQWTYARSLIVGVGLMVLQQFGGVNAIVFYASAIF 305
Query: 300 ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ- 358
+SAGFSG +G IAMV +QIPMT LG +LMDKSGRRPLLL SAAGTCLGC +SFL Q
Sbjct: 306 VSAGFSGRVGSIAMVAVQIPMTTLGTILMDKSGRRPLLLASAAGTCLGCFFVGISFLLQG 365
Query: 359 -----------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 401
+Y G+FSLGMGGIPWVIMSE+FPINMKGSAGSLVTLVSWLGSW
Sbjct: 366 LQGWKELGPIFALLGVLIYDGAFSLGMGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSW 425
Query: 402 IISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
IIS+ FNFLMKWSS GTFF FS+IC +TVLFVAKLVPETKGRTLEEIQASMNP S
Sbjct: 426 IISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGRTLEEIQASMNPLS 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504068|ref|XP_003520821.1| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/474 (71%), Positives = 386/474 (81%), Gaps = 24/474 (5%)
Query: 5 LSSSLLKEKSQVHGGGSSGGESGSGSASATSAV----VLSTFVAVCGSYVFGSAIGYSSP 60
SS LL +Q +GG + G + T +V +L+T VAV GSYVFGSA+GYSSP
Sbjct: 12 FSSPLLPIGAQGYGG-NHGNDYEEKRQKETWSVPPILILTTLVAVSGSYVFGSAVGYSSP 70
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
AQ+GI +DL + VAEYSLFGSILTIGAMIGAI+SG+IADY GRR MGFS++ CI+GW+
Sbjct: 71 AQTGIMDDLNVGVAEYSLFGSILTIGAMIGAIISGRIADYAGRRTAMGFSEVFCILGWLA 130
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
I F+K WWL +GRL VG GMGLLSYVVP+YIAEITPKNLRGGFTTVHQLMIC GVS+TY
Sbjct: 131 IAFAKVGWWLYVGRLFVGCGMGLLSYVVPIYIAEITPKNLRGGFTTVHQLMICCGVSLTY 190
Query: 181 LIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS 240
L+GAFLNWRILAL+G IPC+VQL+GL FIPESPRWLAK G SE+ LQRLRG +AD+S
Sbjct: 191 LVGAFLNWRILALLGIIPCIVQLLGLFFIPESPRWLAKFGHWERSESVLQRLRGKNADVS 250
Query: 241 EEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300
+EA EIR++TE L+R +E I+ LFQ +Y SL VGVGLM+LQQFGGVNGIAFYASSIFI
Sbjct: 251 QEATEIRDFTEALQRETE-SIIGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFI 309
Query: 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ-- 358
SAGFSGSIGMIAMV +QIPMT LGVLLMDKSGRRPLLL+SA+GTCLGC LAALSF Q
Sbjct: 310 SAGFSGSIGMIAMVAVQIPMTALGVLLMDKSGRRPLLLISASGTCLGCFLAALSFTLQDL 369
Query: 359 ----------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 402
VYTGSFSLGMGGIPWVIMSE+FPIN+KGSAGSLVTLVSWL SWI
Sbjct: 370 HKWKEGSPILALAGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWI 429
Query: 403 ISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
+S+ FNFLM WSS GTFF FS+IC T+LFVAKLVPETKGRTLEE+QAS+NP+S
Sbjct: 430 VSYAFNFLMSWSSAGTFFIFSSICGFTILFVAKLVPETKGRTLEEVQASLNPYS 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435707|ref|XP_004135636.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/473 (68%), Positives = 384/473 (81%), Gaps = 21/473 (4%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E G L++ + GGSSGG + + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7 ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
++GI DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64 EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG DIS
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
E EI+EYTE L++L E +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ--- 358
AGFSG+IG IA+ +QIPMT LGV+LMD SGRRPLL++SAAGTCLG L ALSFLF+
Sbjct: 304 AGFSGNIGTIALASVQIPMTALGVVLMDVSGRRPLLMISAAGTCLGSLCLALSFLFKDLQ 363
Query: 359 ---------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
VY+GSFSLGMG IPWVIMSE+FPINMKG AGSLVTLVSWLGSWI+
Sbjct: 364 LWQSGSPMMALAGVLVYSGSFSLGMGAIPWVIMSEIFPINMKGLAGSLVTLVSWLGSWIV 423
Query: 404 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
S++FNFL+ WSSTG FF FS+IC TVLFVAK VPETKGRTLEEIQA+MNP S
Sbjct: 424 SYSFNFLLNWSSTGIFFIFSSICGFTVLFVAKFVPETKGRTLEEIQAAMNPLS 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449485745|ref|XP_004157263.1| PREDICTED: sugar transporter ERD6-like 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/473 (68%), Positives = 384/473 (81%), Gaps = 21/473 (4%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
E G L++ + GGSSGG + + SAT +++ ST VAV GSYVFG+AIGYSSP+
Sbjct: 7 ETGQLCPLIETHNHDFHGGSSGGRA---TGSATFSLIFSTLVAVSGSYVFGTAIGYSSPS 63
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
++GI DL L+V+EYS FGSILTIGAMIGAI+SGK+ADYIGRRGTMGF++I C++GW +I
Sbjct: 64 EAGIMTDLDLTVSEYSFFGSILTIGAMIGAIVSGKLADYIGRRGTMGFAEIFCLLGWFLI 123
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSKA WWLD+GR+LVG+GMG++SYVVPV+IAEITPK LRG FTTVHQLMIC GVS+T+L
Sbjct: 124 AFSKAVWWLDIGRILVGFGMGVISYVVPVFIAEITPKELRGAFTTVHQLMICFGVSLTWL 183
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGAF+NWR LALIG IP ++QL+GL F PESPRWL K G+G++ E ALQRLRG DIS
Sbjct: 184 IGAFVNWRTLALIGAIPSVIQLVGLPFTPESPRWLTKNGQGLDCEDALQRLRGKTKDIST 243
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
E EI+EYTE L++L E +L+LFQR+YA SL VG+GLMVLQQFGGVNGIAFY +S+F S
Sbjct: 244 EVLEIQEYTELLKQLPEPSVLDLFQRQYARSLFVGLGLMVLQQFGGVNGIAFYVTSLFTS 303
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ--- 358
AGFSG+IG IA+ +QIPMT LGV+LMD SGRRPLL++SAAGTCLG L ALSFLF+
Sbjct: 304 AGFSGNIGTIALASVQIPMTALGVVLMDVSGRRPLLMISAAGTCLGSLCLALSFLFKDLQ 363
Query: 359 ---------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
VY+GSFSLGMG IPWVIMSE+FPINMKG AGSLVTLVSWLGSWI+
Sbjct: 364 LWQSGSPMMALAGVLVYSGSFSLGMGAIPWVIMSEIFPINMKGLAGSLVTLVSWLGSWIV 423
Query: 404 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
S++FNFL+ WSS+G FF FS+IC TVLFVAK VPETKGRTLEEIQA+MNP S
Sbjct: 424 SYSFNFLLNWSSSGIFFIFSSICGFTVLFVAKFVPETKGRTLEEIQAAMNPLS 476
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124361039|gb|ABN09011.1| General substrate transporter; Sugar transporter superfamily [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/444 (71%), Positives = 364/444 (81%), Gaps = 16/444 (3%)
Query: 29 GSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAM 88
S+ TS ++L+T AV GSYVFGSA+GYSSPAQSGIT+DL L VAEYSLFGSILTIGAM
Sbjct: 19 ASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLNLGVAEYSLFGSILTIGAM 78
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVV 148
+GAI+SG +ADY GRR MGFS++ CI+GW+ I SK AWWL +GRLL+G GMG+LSYVV
Sbjct: 79 VGAIVSGSLADYAGRRAAMGFSELFCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVV 138
Query: 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCF 208
P+YIAEITPK+LRGGFT VHQLMIC GVS+TYLIGAFLNWR+LA+IGTIPCL QL+ L F
Sbjct: 139 PIYIAEITPKDLRGGFTAVHQLMICFGVSLTYLIGAFLNWRLLAIIGTIPCLAQLLSLSF 198
Query: 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268
IPESPRWLAK G+ SE+ LQ LRG + DISEEA EIRE+TE ++ +E I LFQ +
Sbjct: 199 IPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIREFTEASQQQTEANIFGLFQLQ 258
Query: 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLM 328
Y SL VGVGL++LQQFGGVN IAFYASSIF+SAGFS SIG IAMVV+QIPMT LGV+LM
Sbjct: 259 YLKSLTVGVGLIILQQFGGVNAIAFYASSIFVSAGFSRSIGTIAMVVVQIPMTALGVILM 318
Query: 329 DKSGRRPLLLVSAAGTCLGCLLAALSFLFQ----------------VYTGSFSLGMGGIP 372
DKSGRRPLLL+SA+GTCLGC L +LSF Q VYTGSFSLGMGGIP
Sbjct: 319 DKSGRRPLLLISASGTCLGCFLVSLSFYLQDLHKEFSPILALVGVLVYTGSFSLGMGGIP 378
Query: 373 WVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLF 432
WVIMSE+FPIN+KGSAGS VT V WL SWI+S+ FNFLM W+S GTFF FS IC LT+LF
Sbjct: 379 WVIMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGTFFIFSTICGLTILF 438
Query: 433 VAKLVPETKGRTLEEIQASMNPFS 456
VAKLVPETKGRTLEE+QAS+NP+
Sbjct: 439 VAKLVPETKGRTLEEVQASLNPYQ 462
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512085|ref|XP_003626331.1| Sugar transporter ERD6, putative [Medicago truncatula] gi|355501346|gb|AES82549.1| Sugar transporter ERD6, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 316/458 (68%), Positives = 364/458 (79%), Gaps = 30/458 (6%)
Query: 29 GSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAM 88
S+ TS ++L+T AV GSYVFGSA+GYSSPAQSGIT+DL L VAEYSLFGSILTIGAM
Sbjct: 19 ASSVPTSILILTTLAAVSGSYVFGSAVGYSSPAQSGITDDLNLGVAEYSLFGSILTIGAM 78
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVV 148
+GAI+SG +ADY GRR MGFS++ CI+GW+ I SK AWWL +GRLL+G GMG+LSYVV
Sbjct: 79 VGAIVSGSLADYAGRRAAMGFSELFCILGWLAIAVSKVAWWLYVGRLLLGCGMGILSYVV 138
Query: 149 PVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCF 208
P+YIAEITPK+LRGGFT VHQLMIC GVS+TYLIGAFLNWR+LA+IGTIPCL QL+ L F
Sbjct: 139 PIYIAEITPKDLRGGFTAVHQLMICFGVSLTYLIGAFLNWRLLAIIGTIPCLAQLLSLSF 198
Query: 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL--------------E 254
IPESPRWLAK G+ SE+ LQ LRG + DISEEA EIR Y ++L +
Sbjct: 199 IPESPRWLAKVGRLERSESTLQHLRGKNVDISEEATEIRVYNKSLFIRVLTFGLSSKASQ 258
Query: 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMV 314
+ +E I LFQ +Y SL VGVGL++LQQFGGVN IAFYASSIF+SAGFS SIG IAMV
Sbjct: 259 QQTEANIFGLFQLQYLKSLTVGVGLIILQQFGGVNAIAFYASSIFVSAGFSRSIGTIAMV 318
Query: 315 VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ---------------- 358
V+QIPMT LGV+LMDKSGRRPLLL+SA+GTCLGC L +LSF Q
Sbjct: 319 VVQIPMTALGVILMDKSGRRPLLLISASGTCLGCFLVSLSFYLQDLHKEFSPILALVGVL 378
Query: 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGT 418
VYTGSFSLGMGGIPWVIMSE+FPIN+KGSAGS VT V WL SWI+S+ FNFLM W+S GT
Sbjct: 379 VYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGT 438
Query: 419 FFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
FF FS IC LT+LFVAKLVPETKGRTLEE+QAS+NP+
Sbjct: 439 FFIFSTICGLTILFVAKLVPETKGRTLEEVQASLNPYQ 476
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571144|ref|XP_003553740.1| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 318/473 (67%), Positives = 374/473 (79%), Gaps = 19/473 (4%)
Query: 2 EEGLSSSLLKEKSQVHGGGSSGGESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPA 61
+ SS LL + S G+ G S+S + ++++T VAV GSYVFGSAIGYSSP
Sbjct: 4 KTDFSSPLLPTSYGPNDAVDSQGK-GPSSSSIPTTLIITTLVAVFGSYVFGSAIGYSSPT 62
Query: 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121
QS I DL L VA+YS+FGSILTIGAMIGA++SG+IADY GRR MGFS + CI+GW+ I
Sbjct: 63 QSAIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSQVFCILGWLAI 122
Query: 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181
FSK AWWL +GRLLVG G+GLLSYVVPVY+AEITPKNLRG FT VHQLMIC G+S+TYL
Sbjct: 123 TFSKVAWWLYVGRLLVGCGIGLLSYVVPVYVAEITPKNLRGAFTAVHQLMICCGMSLTYL 182
Query: 182 IGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241
IGA++NWRILA IG IPCLVQL+ L FIP+SPRWLAK G+ ES++ALQRLRG +AD+ +
Sbjct: 183 IGAYVNWRILATIGIIPCLVQLLSLPFIPDSPRWLAKAGRLKESDSALQRLRGKNADVYQ 242
Query: 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS 301
EA EIR++TE ++ +E I+ LFQ +Y SL VGVGLM+LQQFGG+NGI FYA+SIFIS
Sbjct: 243 EATEIRDHTEAFQKQTEASIIGLFQMQYLKSLTVGVGLMILQQFGGINGIVFYANSIFIS 302
Query: 302 AGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ--- 358
+GFS SIG IA+V ++IPMT +GVLLMDKSGRRPLLLVSA GTC+GC LAALSF+ Q
Sbjct: 303 SGFSESIGTIAIVAVKIPMTTIGVLLMDKSGRRPLLLVSAVGTCVGCFLAALSFVLQDLH 362
Query: 359 ---------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
VY GS+S+GMG IPWVIMSE+FPIN+KGSAGSLVTLVSWL SWII
Sbjct: 363 KWKGVSPILALVGVLVYVGSYSIGMGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWII 422
Query: 404 SFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNPFS 456
S+ FNFLM WSS GTFF FS IC TVLFVAKLVPETKGRTLEEIQAS+N +S
Sbjct: 423 SYAFNFLMSWSSAGTFFMFSGICGFTVLFVAKLVPETKGRTLEEIQASLNSYS 475
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 456 | ||||||
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.763 | 0.740 | 0.604 | 2.3e-146 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.710 | 0.699 | 0.506 | 1.1e-120 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.666 | 0.635 | 0.493 | 5.6e-109 | |
| TAIR|locus:2092379 | 488 | AT3G20460 [Arabidopsis thalian | 0.710 | 0.663 | 0.435 | 5.1e-106 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.776 | 0.713 | 0.432 | 7.3e-105 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.666 | 0.641 | 0.480 | 2.2e-103 | |
| TAIR|locus:2096234 | 458 | AT3G05160 [Arabidopsis thalian | 0.706 | 0.703 | 0.437 | 5.2e-102 | |
| TAIR|locus:2036009 | 462 | AT1G08900 [Arabidopsis thalian | 0.666 | 0.658 | 0.463 | 2.2e-101 | |
| TAIR|locus:2036039 | 464 | AT1G08890 [Arabidopsis thalian | 0.666 | 0.655 | 0.470 | 2.8e-101 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.666 | 0.658 | 0.463 | 6e-97 |
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
Identities = 214/354 (60%), Positives = 250/354 (70%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++L+TFVAV GS+VFGSAIGYSSP QS +T +L LSVAEYSLFGSILTIGAMIGA MSG+
Sbjct: 32 LLLTTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGR 91
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD IGRR TMGFS++ CI+GW+ I SK A WLD+GR LVGYGMG+ S+VVPVYIAEIT
Sbjct: 92 IADMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEIT 151
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK LRGGFTTVHQL+IC+GVS+TYL+G+F+ WRILALIG IPC+VQ++GL IPESPRWL
Sbjct: 152 PKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWL 211
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK GK E E ALQRLRG YT L LSEG I++LFQ +YA SL+VG
Sbjct: 212 AKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVG 271
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLMVLQQFGGVN MVV+QIPMT LGVLLMDKSGRRPL
Sbjct: 272 VGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPL 331
Query: 337 LLVSXXXXXXXXXXXXXSFLFQVY---TGSFS-LGMGGIPWVIMSEVFPINMKG 386
LL+S SF Q +G S L + G+ ++ + F + M G
Sbjct: 332 LLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGV--LVYTGSFSLGMGG 383
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 164/324 (50%), Positives = 211/324 (65%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAVCGS+ FGS GYSSPAQ+ I NDL L++AE+SLFGS+LT GAMIGAI SG
Sbjct: 28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IAD +GR+G M S C++GW+ I+F+K LDLGRL GYGMG SYVVP++IAEI
Sbjct: 88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RG TT++Q++IC GVS++++IG + WR+LALIG IPC +GL FIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E EAAL++LRG Y ETLERL + +L+LFQR+Y S+++
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
GLMV QQFGG+N V+Q+ +T L ++D++GR+PL
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVDRAGRKPL 327
Query: 337 LLVSXXXXXXXXXXXXXSFLFQVY 360
LLVS SF +V+
Sbjct: 328 LLVSATGLVIGCLIAAVSFYLKVH 351
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 150/304 (49%), Positives = 202/304 (66%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTF+AVCGS+ FG ++GY+S A+ GI DL LS+A++S F S+ T+GA IGA+ SGK
Sbjct: 35 VILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGK 94
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A +GRR TM SD++CIIGW I F+K WL+ GR+ G G+GL+SYVVPVYIAEI+
Sbjct: 95 MAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEIS 154
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ G++M Y G FLNWRILAL+G +PC +Q+IGL F+PESPRWL
Sbjct: 155 PKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWL 214
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ +E S+ +LFQRKY ++L+VG
Sbjct: 215 AKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVG 274
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQF G + + + IP ++GV+L+DK GRRPL
Sbjct: 275 IGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTLLGLFMIPKAMIGVILVDKWGRRPL 334
Query: 337 LLVS 340
LL S
Sbjct: 335 LLTS 338
|
|
| TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 141/324 (43%), Positives = 207/324 (63%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++ +TF A+CG++ +G+A G++SPAQ+GI L LS+AE+S FG++LTIG ++GA MSGK
Sbjct: 53 LLFTTFTALCGTFSYGTAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGAAMSGK 112
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+AD GRRG +G S+ C+ GW++I FS+A W LD+GRL +G G+ SYVVPVYI EI
Sbjct: 113 LADVFGRRGALGVSNSFCMAGWLMIAFSQATWSLDIGRLFLGVAAGVASYVVPVYIVEIA 172
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK +RG F+ ++ L++C V++TYL+G+ ++W+ LALI T+PC+ + +GL FIPESPRWL
Sbjct: 173 PKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTVPCVFEFVGLFFIPESPRWL 232
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
++ G+ ESE +LQRLRG Y + L+ E G +LF +Y+ + VG
Sbjct: 233 SRNGRVKESEVSLQRLRGNNTDITKEAAEIKKYMDNLQEFKEDGFFDLFNPRYSRVVTVG 292
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GL+VLQQ GG++ V+Q ++LG++++DK GRR L
Sbjct: 293 IGLLVLQQLGGLSGYTFYLSSIFKKSGFPNNVGVMMASVVQSVTSVLGIVIVDKYGRRSL 352
Query: 337 LLVSXXXXXXXXXXXXXSFLFQVY 360
L V+ SFLFQ Y
Sbjct: 353 LTVATIMMCLGSLITGLSFLFQSY 376
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| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 160/370 (43%), Positives = 215/370 (58%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V LSTFVAV GS+ G +G+SS AQ+GIT DL LSVAEYS+FGSILT+G +IGA+ SGK
Sbjct: 58 VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGK 117
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+AD +GR+ TM F + CI GW+ + ++ A WLD GRLL+G G+G+ SYV+PVYIAEI
Sbjct: 118 VADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIA 177
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG F +QLM G+S+ ++IG F+ WR+L ++G +PC+ + L FIPESPRWL
Sbjct: 178 PKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL 237
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E ++LQRLRG + E E + ELFQR+YA+ LI+G
Sbjct: 238 AKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIG 297
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
VGLM LQQ G + + I +P +L +L+DK GRR L
Sbjct: 298 VGLMFLQQLCGSSGVTYYASSLFNKGGFPSAIGTSVIATIMVPKAMLATVLVDKMGRRTL 357
Query: 337 LLVSXXXXXXXXXXXXXSFLFQVYTGSFSLGMGGIPWVIMSEVFPI-NMKGSAGSLVTLV 395
L+ S S+ FQ S G I+ E+ PI G G +V+
Sbjct: 358 LMASCSAMGLSALLLSVSYGFQ------SFG-------ILPELTPIFTCIGVLGHIVSFA 404
Query: 396 SWLGS--WII 403
+G WII
Sbjct: 405 MGMGGLPWII 414
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| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 2.2e-103, Sum P(2) = 2.2e-103
Identities = 146/304 (48%), Positives = 195/304 (64%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTFVAVCGS+ FG A GY+S A++G+ DL LS+A++S FGS T+GA IGA+ G
Sbjct: 31 VILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGN 90
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A IGRRGTM SD +CI GW+ I F+K L+ GR++ G G GL SYVVPVYIAEIT
Sbjct: 91 LAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEIT 150
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ G++M Y G F+ WR LAL+G +PC +Q+IGL F+PESPRWL
Sbjct: 151 PKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWL 210
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ +E S+ +LFQRKY ++L+VG
Sbjct: 211 AKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVG 270
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQF G + + IP ++G++L+DK GRRPL
Sbjct: 271 IGLMLIQQFSGSAAVISYASTIFRKAGFSVAIGTTMLGIFVIPKAMIGLILVDKWGRRPL 330
Query: 337 LLVS 340
L+ S
Sbjct: 331 LMTS 334
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| TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
Identities = 141/322 (43%), Positives = 194/322 (60%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
V+LSTFVAVC S+ +G A GY+S A++ I +L LS+A++S FGS L +G +GA+ SG+
Sbjct: 21 VILSTFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQ 80
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
+A +GRR T+ D+ CI GW+ I F+K WLDLGR+ +G G+GL SYVVPVYIAEIT
Sbjct: 81 LAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEIT 140
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG F+ L+ G+S+ Y G +NWR+LA+IG +PC + +IG+ FIPESPRWL
Sbjct: 141 PKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYFIPESPRWL 200
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G E E +L RLRG T+ LE S+ ++FQ+KY +L+VG
Sbjct: 201 AKIGSVKEVENSLHRLRGKDADVSDEAAEIQVMTKMLEEDSKSSFCDMFQKKYRRTLVVG 260
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM++QQ G + V IP L+G++L+D+ GRRPL
Sbjct: 261 IGLMLIQQLSGASGITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLILVDRWGRRPL 320
Query: 337 LLVSXXXXXXXXXXXXXSFLFQ 358
LL S SF Q
Sbjct: 321 LLASAVGMSIGSLLIGVSFTLQ 342
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| TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 141/304 (46%), Positives = 192/304 (63%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++LST V V GS+ +G A+ YSSPAQS I +LGLSVA+YS F S++T+G MI A+ SGK
Sbjct: 25 LLLSTSVVVAGSFCYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAVFSGK 84
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
I+ +GRR TM SD+ CI GW+ + F+ L+ GRL +G+G+GL+SYVVPVYIAEIT
Sbjct: 85 ISALVGRRQTMWISDVCCIFGWLAVAFAHDIIMLNTGRLFLGFGVGLISYVVPVYIAEIT 144
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RGGF+ +QL+ C+G+S+ + G F +WR LAL+ IP Q+I L FIPESPRWL
Sbjct: 145 PKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICLFFIPESPRWL 204
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
A G+ E E +L++LRG E + S+ GI +LF AHSLI+G
Sbjct: 205 AMYGQDQELEVSLKKLRGENSDILKEAAEIRETVEISRKESQSGIRDLFHIGNAHSLIIG 264
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM+LQQF G + VI IP +++ +L +D+ GRRPL
Sbjct: 265 LGLMLLQQFCGSAAISAYAARIFDKAGFPSDIGTTILAVILIPQSIVVMLTVDRWGRRPL 324
Query: 337 LLVS 340
L++S
Sbjct: 325 LMIS 328
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| TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 143/304 (47%), Positives = 191/304 (62%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++LST VAV GS+V+G A+ YSSPAQS I +LGLSVA+YS F S++T+G MI A SGK
Sbjct: 27 LLLSTSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAAFSGK 86
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
IA IGRR TM +D+ CI GW+ + F+ L++GR +G+G+GL+SYVVPVYIAEIT
Sbjct: 87 IAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISYVVPVYIAEIT 146
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK RGGF+ +QL+ G+S+ + G F +WR LAL+ IPC +Q+I L FIPESPRWL
Sbjct: 147 PKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIPESPRWL 206
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
A G+ E E L+RLRG ET R S G+ +LF K AH LI+G
Sbjct: 207 AMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSGLKDLFNMKNAHPLIIG 266
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM+LQQF G + + VI +P +++ + +D+ GRRPL
Sbjct: 267 LGLMLLQQFCGSSAISAYAARIFDTAGFPSDIGTSILAVILVPQSIIVMFAVDRCGRRPL 326
Query: 337 LLVS 340
L+ S
Sbjct: 327 LMSS 330
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| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 141/304 (46%), Positives = 193/304 (63%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
++ STF+ V S+ FG+AIGY++ S I +DL LS+A++SLFGS+ T G MIGAI S K
Sbjct: 26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAK 85
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
A G + T+ +D+ CI GW+ I +K WLD+GR LVG G+GL+SYVVPVYIAEIT
Sbjct: 86 AASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEIT 145
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWL 216
PK++RG FT +QL+ GV++ Y G FL+WR LA+IG+IPC +Q+IGL FIPESPRWL
Sbjct: 146 PKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWL 205
Query: 217 AKTGKGIESEAALQRLRGXXXXXXXXXXXXXXYTETLERLSEGGILELFQRKYAHSLIVG 276
AK G+ E E LQ+LRG E ++ S I LF+++YAH L +G
Sbjct: 206 AKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIG 265
Query: 277 VGLMVLQQFGGVNXXXXXXXXXXXXXXXXXXXXXXXMVVIQIPMTLLGVLLMDKSGRRPL 336
+GLM+LQQ G + +I +P +L+G++L+D+ GRRPL
Sbjct: 266 IGLMLLQQLCGTAGISSYGSTLFKLAGFPARIGMMVLSLIVVPKSLMGLILVDRWGRRPL 325
Query: 337 LLVS 340
L+ S
Sbjct: 326 LMTS 329
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8MKK4 | TRE12_DROME | No assigned EC number | 0.3198 | 0.9144 | 0.8545 | yes | no |
| Q3ECP7 | ERDL5_ARATH | No assigned EC number | 0.7174 | 0.9385 | 0.9106 | yes | no |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3282 | 0.8925 | 0.8532 | yes | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3241 | 0.8925 | 0.8905 | yes | no |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3227 | 0.9166 | 0.8744 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XIII.1134.1 | hypothetical protein (437 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 456 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-85 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-70 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-56 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-26 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-12 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 7e-09 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 1e-07 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-06 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 9e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-04 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 8e-04 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 0.002 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 3e-85
Identities = 146/446 (32%), Positives = 232/446 (52%), Gaps = 36/446 (8%)
Query: 41 TFVAVCGSYVFGSAIGYSSPAQSGI-----------TNDLGLSVAEYSLFGSILTIGAMI 89
VA G ++FG G + I S L SI ++G +I
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 90 GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLLSYV 147
G++ +GK+ D GR+ ++ +++ +IG ++ F+K + L +GR++VG G+G +S +
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN-------WRILALIGTIPCL 200
VP+YI+EI PK LRG +++QL I G+ + +IG LN WRI + +P +
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG 260
+ LIGL F+PESPRWL GK E+ A L +LRG E E ++E
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241
Query: 261 ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIP 319
+ + L++GV L + QQ G+N I +Y+ +IF + G S S+ + I + V+
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301
Query: 320 MTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ---------------VYTGSF 364
T + + L+D+ GRRPLLL+ AAG + L+ ++ L ++ F
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFF 361
Query: 365 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSA 424
+LG G +PWVI+SE+FP+ ++ A ++ T +WL +++I F F + F F+
Sbjct: 362 ALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAG 421
Query: 425 ICSLTVLFVAKLVPETKGRTLEEIQA 450
+ L +LFV VPETKGRTLEEI
Sbjct: 422 LLVLFILFVFFFVPETKGRTLEEIDE 447
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-70
Identities = 136/421 (32%), Positives = 216/421 (51%), Gaps = 36/421 (8%)
Query: 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123
N S + + L SI +G IGA+ +G ++D GR+ ++ ++ +IG +++
Sbjct: 61 TSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGL 120
Query: 124 SKAAW---WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTY 180
+ A L +GR+L+G G+G+ S +VP+Y++EI PK LRG T+++QL I G+ + Y
Sbjct: 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY 180
Query: 181 LIGAF-------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLR 233
G+ L WRI + IP + +GL F+PESPRWL G+ E+ +L RLR
Sbjct: 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR 240
Query: 234 GADADISEEAAE-----IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288
G + E E I+ E G L R+ L +GV L QQF G+
Sbjct: 241 GTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGI 300
Query: 289 NGIAFYASSIFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345
N I +Y+ +IF +AG S I + + T + + L+D+ GRRPLLL+ AAG
Sbjct: 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMA 360
Query: 346 LGCLLAALSFLFQV-----------------YTGSFSLGMGGIPWVIMSEVFPINMKGSA 388
+ + + V + F++G G +PWVI+SE+FP++++
Sbjct: 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420
Query: 389 GSLVTLVSWLGSWIISFTFNFLMKWSSTG-TFFAFSAICSLTVLFVAKLVPETKGRTLEE 447
S+ +WL ++I+ F F +++ G F F + L ++FV +PETKGRTLEE
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480
Query: 448 I 448
I
Sbjct: 481 I 481
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 2e-56
Identities = 118/414 (28%), Positives = 198/414 (47%), Gaps = 57/414 (13%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV------IIVFSKA------AWWLDL 132
IG +IG + G ++ GRR ++ + ++ I + S +
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------- 185
R++ G G+GL S + P+YIAEI P ++RG + +Q I G + Y + F
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 186 -----LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG---ADA 237
WR + IP L+ L+ L F+PE+PR+L GK ++E L+++ G A
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 238 DISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASS 297
+ E + +T +L G+ +++GV L V QQF G+N + +YA
Sbjct: 246 ALQEIKHSLDHGRKTGGKLLMFGVG---------VIVIGVMLSVFQQFVGINVVLYYAPE 296
Query: 298 IFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354
IF + G S I + I + VI + T+L ++ +DK GR+PL ++ A G +G +
Sbjct: 297 IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 356
Query: 355 FLFQ-----------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
F Q Y +F++ G + WV++SE+FP ++G A ++ W+ ++ +
Sbjct: 357 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416
Query: 404 SFTFNFLMKWSSTGTFFA-------FSAICSLTVLFVAKLVPETKGRTLEEIQA 450
S+TF + K S F + + L LF+ K VPETKG+TLEE++A
Sbjct: 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 36/390 (9%)
Query: 78 LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137
L S +G ++G+ + G ++D GR+ + S +V + V+ FS + RLLV
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192
G G+G + V E PK R +I + S+ ++ + +WR L
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIV----GTLIQVFFSLGLVLLPLVAYFIPDWRWLQ 246
Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGAD-ADISEEAAEIREYTE 251
L ++P + + F+PESPRWL G+ E+ LQR+ + + E + +
Sbjct: 247 LAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD 306
Query: 252 TLERLSEGGILELFQ----RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS 307
+ L+LF+ RK +L + + ++Y + + G+
Sbjct: 307 LSSSKKQYSFLDLFRTPNLRK--TTLCLMMLWF-------TTAFSYYGLVLDLG-NLGGN 356
Query: 308 IGMIA--MVVIQIPMTLLGVLLMDKSGRRPLLLVS--AAGTCLGCLLAALSFLFQVYTGS 363
I + ++++P L+ +LL+D+ GRR + S AG L LL L+ + T
Sbjct: 357 IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTAL 416
Query: 364 FSLGMGGIP------WVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTG 417
LG GI ++ +E++P ++ + + ++ +GS IIS +L +
Sbjct: 417 AVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVYLGEKWLFL 475
Query: 418 TFFAFSAICSLTVLFVAKLVPETKGRTLEE 447
F + L + +PETKG L E
Sbjct: 476 PLVLFGGLALLAGILTL-FLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 81/353 (22%), Positives = 143/353 (40%), Gaps = 30/353 (8%)
Query: 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113
A+G+++PA I+ + GL + S IG GA+ G +AD IGRR + +S ++
Sbjct: 35 AMGFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILL 91
Query: 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173
+ ++ + L + R L G G+G L + ++E PK RG +
Sbjct: 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYP 151
Query: 174 IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWL----AKTGKGIE 224
IG ++ + +L WR L +G I P L+ L+ + F+PES +L +T + I
Sbjct: 152 IGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIV 211
Query: 225 SEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284
+ A Q A + + E+ A LFQ K A ++ L +
Sbjct: 212 NAIAPQMQAEAQSALPEQKATQGTKRSVF--------KALFQGKTARITVLLWLLYFMLL 263
Query: 285 FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVL---LMDKSGRRPLLLVSA 341
GV + + + + GFS S+ + + ++ L D+ G R L+
Sbjct: 264 V-GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL 322
Query: 342 AGTCLGCLLAALSF------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSA 388
G L+ + F L G F G + +M+ +P ++ +
Sbjct: 323 LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATG 375
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY 100
+ G ++ G G SPA + DLGLS ++ L S ++G +G++++G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 101 IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL 160
GRR + ++ +G +++ F+ + W L +GR L+G G G L IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 161 RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIP 210
RG + +G + L+G L WR L LI I L+ + L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 84/378 (22%), Positives = 148/378 (39%), Gaps = 50/378 (13%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L+ F+A G + G A+ + DLG+S E L + ++G + ++G+
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLY------LAEDLGISPTEIGLLLTAFSLGYALAQPLAGR 54
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156
++D GRR + ++ +G ++++F+ + W L + R+L G G G L IA+
Sbjct: 55 LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114
Query: 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPE 211
P RG + +G ++ L+G L WR LI I L+ ++ +P
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPR 174
Query: 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271
P + E+ A L +L R
Sbjct: 175 PPPESKRPKPAEEAPAPLV-----------------------------PAWKLLLRDPVL 205
Query: 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS 331
L++ + L F + + Y + +SA +G + +A ++ I LLG L D+
Sbjct: 206 WLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR-LSDRL 264
Query: 332 GRRPLLLVSAAGTCLGCLLAALSFLFQ----VYTGSFSLGMG-----GIPWVIMSEVFPI 382
GRR LL++ L L AL L + + LG G ++S++ P
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324
Query: 383 NMKGSAGSLVTLVSWLGS 400
+G+A L LG
Sbjct: 325 EERGTASGLYNTAGSLGG 342
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 22/225 (9%)
Query: 25 ESGSGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILT 84
E G G VL + G VF +G+ P+ DL + + + G I+
Sbjct: 158 ECGHGRFQWALFFVLGLALMADGVEVF--VVGFVLPSAE---KDLCIPDSGKGMLGLIVY 212
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G M+GA G +AD +GR+ + V F + + RLL G+G+G
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIG----VSMTYLI----------GA---FLN 187
+V Y AE + RG + + IG +M + I G+ F +
Sbjct: 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHS 332
Query: 188 WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
WR+ ++ PC+ + L F+PESPR+ + GK E+ L+ +
Sbjct: 333 WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 7e-09
Identities = 97/445 (21%), Positives = 152/445 (34%), Gaps = 93/445 (20%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW--------WLDLGRLL 136
IG + G + G +AD +GR+ G I+ II V S L R
Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFW 124
Query: 137 VGYGMGLLSYVVPVYI-AEITPKNLRGGFTTVHQLM-----ICIGVSMTYLIGAFLN--- 187
+G G+G Y + I +E K RG M + + ++ F +
Sbjct: 125 LGVGIGG-DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLE 183
Query: 188 -------------------WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAA 228
WRIL G +P L+ L IPE+PR+ A K +E A+
Sbjct: 184 AAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS 243
Query: 229 LQR--LRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286
L+ +E + E + F+ ++ L+ G L
Sbjct: 244 DMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLD-- 301
Query: 287 GVNGIAFYASSIFISAGFSGSIGMIA-------------MVVIQIPMTLLG--------V 325
IAFY ++ S +IG V + + L G V
Sbjct: 302 ----IAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356
Query: 326 LLMDKSGRRPLLLVSAAGTCLGCLLAALSF---------LFQVYTGSF---SLGMGGIPW 373
L+D GR+P+ L L L L F +Y + + G +
Sbjct: 357 FLVDIIGRKPIQL--MGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTF 414
Query: 374 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM------KWSSTGTFFAFS---- 423
++ EVFP + +A + G+ I F F +L K TG +
Sbjct: 415 IVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474
Query: 424 AICSLTVLFVAKLVPETKGRTLEEI 448
A+ + L+PETKG++LEE+
Sbjct: 475 ALFMFLGILFTLLIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 78/391 (19%), Positives = 148/391 (37%), Gaps = 97/391 (24%)
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV----FSKAAWW----LDLGRLLVGYG 140
+GAI+ G D IGR+ T+ + ++ IG ++I ++ W L L RL+ G+
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLN------------W 188
+G +Y+AE P RG + + Q+ +G+ + L L+ W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248
RI L+ + L+ L + E+P + K
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH-------------------------- 203
Query: 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SA 302
+ G I E K+ ++G+GL++ FY + ++ +
Sbjct: 204 ------KKKRGPIAETL-TKHRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTL 250
Query: 303 GFSGSIGMIAMVVIQIPMTL---LGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQV 359
G S + ++ +++ I + L L D+ GRRP+L+ T L LLA + +
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI---IFTVLAALLAVPLLMALL 307
Query: 360 YTGSFSLGMGGIPWV-------------IMSEVFPINMKGSAGSLV---------TLVSW 397
+GSF+L + + + E+FP ++ + SL +
Sbjct: 308 DSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY 367
Query: 398 LGSWIISFTFNFLMKWSSTGTFFAFSAICSL 428
+ + +++ T W + G + A A+ L
Sbjct: 368 IAAALVAMT----GDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 87/410 (21%), Positives = 148/410 (36%), Gaps = 70/410 (17%)
Query: 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118
S A + DLGLS A+Y S + G ++G G + D G R T+ V I+ W
Sbjct: 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLA----VFIVIW 69
Query: 119 VIIV----FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMI-- 172
+ F+ A L + R+L+G + + +A P + R ++
Sbjct: 70 GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL 129
Query: 173 --CIGVSMTYLIGAFLNWRILALIGTIPCLV-QLIGLCFI---PESPRWLAKTGKGIESE 226
IG + I +W+ +I + ++ ++ L FI P+ +WL + K I
Sbjct: 130 GGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVG 189
Query: 227 AALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK-------YAHSLIVGVGL 279
L E T ++ E L R+ I
Sbjct: 190 GLL-----------AEQQGKGPSTPKKYQIKEL----LKDRRVWGLALGQFLVNIGLGFF 234
Query: 280 MV-----LQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR 334
+ L Q G++ + AGF + + +V I M L G L R
Sbjct: 235 LTWFPTYLVQERGLS---------ILEAGF---MASLPGIVGFIGMILGGRLSDLLLRRG 282
Query: 335 PLLLVSAAGTCLGCLLAALSF------------LFQVYTGSFSLGMGGIPWVIMSEVFPI 382
L+ + + L+ +L L V G F LG G I W ++S+ P
Sbjct: 283 KSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPG 342
Query: 383 NMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTF-FAFSAICSLTVL 431
N+ G G L+ + LG + + ++TG+F A + +L ++
Sbjct: 343 NIAGLTGGLINSLGNLGGIVGPIVIGAIA--ATTGSFAGALMVVAALALI 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
A + + GL VA+ S +G + GA++ G++AD IGR+ + S V + G
Sbjct: 37 AAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS--VALFG--- 91
Query: 121 IVFSKA---AWWLD---LGRLLVGYGMGLLSYVVPVYIA---EITPKNLRGGFTTVHQLM 171
+FS A AW + RLL G G+G +P IA E LRG T LM
Sbjct: 92 -LFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRG---TAVSLM 144
Query: 172 IC---IGVSMTYLIGAFL----NWRILALIGTI-PCLVQLIGLCFIPESPRWLAKTGKGI 223
C G ++ +IG WR + +G + P L+ + + ++PES + G G
Sbjct: 145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK 204
Query: 224 ESEAALQRLRG 234
+ L+ L G
Sbjct: 205 QRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 40/177 (22%), Positives = 61/177 (34%), Gaps = 11/177 (6%)
Query: 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG----SIGMIAMVVIQIPMTLLGVLLM 328
L++ + L G G+ Y + + + I LLG LL
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 329 DKSGRRP-LLLVSAAGTCLGCLLAALSFLFQVYTGSFSL------GMGGIPWVIMSEVFP 381
D+ GRR LLL+ LG LL AL+ + + L + SE+ P
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295
Query: 382 INMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 438
+G+A L LG + L+ G F A +L + L+P
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
I DLGL+ E + + IG G + G +AD GR+ M +S + +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIG-VSMTYLIG 183
L L R +VG GM Y E PK+L+ + IG + Y +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 184 AF---LNWRILALIGTIPCLVQLIGLCFIPESPRWLAK--TGKGIESEAA 228
+F WR +G +P L+ + PES W +GKG S++A
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSA 213
|
Length = 426 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 85 IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144
+G +I + +SG + D GR+ + + ++ + S L + R L G+G
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200
IA+I P RG + I +G + +G L WR L I L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 201 VQLIGLCFIPE 211
I L F+
Sbjct: 129 AAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 4/172 (2%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
+ + GL+ + + S I G ++ G + D GRR M S ++ +G + F+
Sbjct: 46 VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA 105
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
W L + RL++G GM Y+ E PK+LR + IG + + +
Sbjct: 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165
Query: 185 FL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRL 232
+ WR L IG +P + L +PE+ W K + L
Sbjct: 166 LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
++L S+ + + Y + LGLS AE L S+ +G ++GA++ G
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLY---LQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 96 KIADYIGRR-GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE 154
++D +GRR + ++ +G +++ + + L + LL+G+G+G + +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292
Query: 155 ITPKNLRGG----FTTVHQLMICIGVSMTYLIGAFLNWRILALIGTIPCLVQLIGLCFIP 210
+ P RG F T L +G + L+ + + LI L+ + L +P
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 9e-05
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 30 SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMI 89
A+A + L+ ++ G+ I DLG+S + +G +
Sbjct: 4 PATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVAL 63
Query: 90 GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP 149
GA + + + RR + + I+ ++ + + L L R L G G+ +
Sbjct: 64 GAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA 123
Query: 150 VYIAEITPKNLRG--------GFTTVHQLMICIGVSMTYLIGAFLNWR----ILALIGTI 197
A + P RG G T L +GV + +G WR +A++ +
Sbjct: 124 ALAARLVPPGKRGRALALVFTGLT----LATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179
Query: 198 PCLVQLI 204
L+
Sbjct: 180 ALLLLWK 186
|
Length = 394 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSG 95
++L + V + Y T LG + +S+ I TI A++GA +
Sbjct: 226 ILLLLYLLNALAMAVRNGLLLYY------FTYVLG-NAGLFSVLLLIGTIAAILGAPLWP 278
Query: 96 KIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153
+A G++ T ++ IG V++ F + W + +L G G+GL + + +A
Sbjct: 279 WLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLA 338
Query: 154 EI 155
++
Sbjct: 339 DV 340
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 30/140 (21%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI 101
+ +FG A LGLS L + + IG ++ G+++D +
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264
Query: 102 GRRGTMGFSDIVCII---GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPK 158
GRR + + ++ I+ G ++ ++++ WL + LL+G+G GL+ + ++++ PK
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324
Query: 159 NLRGGFTTVHQLMICIGVSM 178
RG + ++ +G ++
Sbjct: 325 EERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 73/377 (19%), Positives = 132/377 (35%), Gaps = 32/377 (8%)
Query: 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120
A + ++GLS + L S +I I + G ++D R + I+C I +
Sbjct: 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76
Query: 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF----TTVHQLMICIGV 176
FS + W + L G G+ + + ++ RG + H + +
Sbjct: 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136
Query: 177 SMTYLIGAFLN-WR-ILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRG 234
+ A L W + + G I +V LI + +SP+ G+ A
Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ-----SCGL-PPAEEMPNEE 190
Query: 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY 294
D D ++ E+ + L+ + L + + + V + V+ + G ++ Y
Sbjct: 191 PDGDAEKKEEELTKKQIFLQYV-------LLNKVLWYISLGYVFVYVV-RTGILDWSPLY 242
Query: 295 ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK---SGRRPLLLVSAAGTCLGCLL- 350
+ + S + + TLL L DK R PL + A + L+
Sbjct: 243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY 302
Query: 351 ---AALSFL----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403
A + L G G + VI SE+ P G+A V ++LG +
Sbjct: 303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILA 362
Query: 404 SFTFNFLMK-WSSTGTF 419
+L + G F
Sbjct: 363 GLPLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 89 IGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD------LGRLLVGYGMG 142
GA+M G D GRR M + I+ + + + + RL++G GMG
Sbjct: 62 FGALMFGLWGDRYGRRLPM----VTSIVLFSAGTLACG--FAPGYITMFIARLVIGIGMG 115
Query: 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------LNWRILA 192
Y+ E PK+LR + + G ++ ++ A WR L
Sbjct: 116 GEYGSSAAYVIESWPKHLRNKASGLLIS----GYAVGAVVAAQVYSLVVPVWGDGWRALF 171
Query: 193 LIGTIPCLVQLIGLCFIPESPRWLAK 218
I +P + L IPE+ W K
Sbjct: 172 FISILPIIFALWLRKNIPEAEDWKEK 197
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.98 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.92 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.86 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.83 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.78 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.77 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.76 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.76 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.68 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.6 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.49 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.49 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.48 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.48 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.46 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.45 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.45 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.41 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.33 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.32 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.31 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.3 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.29 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.28 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.28 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.27 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.26 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.25 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.24 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.24 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.23 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.23 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.23 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.21 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.19 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.19 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.18 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.17 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.17 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.16 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.16 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.15 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.15 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.13 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.13 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.13 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.13 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.12 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.12 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.12 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.11 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.11 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.1 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.1 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.1 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.1 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.09 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.09 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.08 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.05 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.04 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.03 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.03 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.03 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.01 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.99 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.99 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.98 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.98 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.97 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.96 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.95 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.92 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.88 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.87 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.87 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.83 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.83 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.83 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.8 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.8 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.79 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.71 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.69 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.65 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.6 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.6 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.58 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.58 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.55 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.54 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.53 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.51 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.43 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.43 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.41 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.4 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.35 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.33 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.3 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.28 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.23 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.22 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.2 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.01 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.95 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.91 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.9 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.81 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.77 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.66 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.65 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.6 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.28 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.21 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.95 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.83 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.82 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.81 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.64 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.63 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.49 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.03 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.03 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.02 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.65 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.5 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.01 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.84 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.42 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.56 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 91.91 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.83 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 90.87 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.61 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 90.55 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 90.42 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.36 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 87.6 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 85.15 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 82.23 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 81.9 | |
| PF04346 | 354 | EutH: Ethanolamine utilisation protein, EutH; Inte | 81.53 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=315.65 Aligned_cols=423 Identities=34% Similarity=0.574 Sum_probs=354.2
Q ss_pred chhHHHHHHHHHHHhhhhhhccccceecccccccc--------cccC--CChhh----HHHHHHHHHHHHHHHHHHHhhh
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGIT--------NDLG--LSVAE----YSLFGSILTIGAMIGAIMSGKI 97 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~~~~~----~~~~~s~~~~~~~~~~~~~G~l 97 (456)
+..++....+....++.+-+|++.+.+++..+.+. +.+| .++++ .+.+.+++.+|.++|+...|.+
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888999999999888755443 3344 34433 5667899999999999999999
Q ss_pred hcccCchHHHHHHHHHHHHHHHHHHH---hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH
Q 012803 98 ADYIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI 174 (456)
Q Consensus 98 ~dr~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (456)
+||+|||..+.++.++..++.++..+ .+++..++++|++.|+..|........++.|..|++.||....+.+.+..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 99999999999999888888777765 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc------cchHHHHHhHHHHHHHHHHhhccCCChhHHHh-cCCcHHHHHHHHHHhCCCCCchHHHHHHH
Q 012803 175 GVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPRWLAK-TGKGIESEAALQRLRGADADISEEAAEIR 247 (456)
Q Consensus 175 G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (456)
|.+++..++.-- .|++.+....+++++..+...++||+|||+.. +++.++|++.+++.++.+++..+..+..+
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 999997766322 79999999999999999999999999999988 78889999999999887755444444333
Q ss_pred HHHHHH-hhcChhhHHHHhhhhhh-hHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHH
Q 012803 248 EYTETL-ERLSEGGILELFQRKYA-HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTL 322 (456)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 322 (456)
+.++++ .++++.+++++++++.. +...+...+....++.+.+...+|...++.+.|.+.. ......++..++.++
T Consensus 244 e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~ 323 (485)
T KOG0569|consen 244 EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL 323 (485)
T ss_pred HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333332 23367789999998654 4566667777888888999999999999999988765 777888889999999
Q ss_pred HHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccccccceeeecccCCccchh
Q 012803 323 LGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF----------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKG 386 (456)
Q Consensus 323 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
++.++.||.|||++++.+..++.+..+++.... ....+...+..|.+|+.+.+.+|++|++.|.
T Consensus 324 ~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~ 403 (485)
T KOG0569|consen 324 VSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS 403 (485)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH
Confidence 999999999999999999999888877766531 1114455677788999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhcCC
Q 012803 387 SAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 454 (456)
Q Consensus 387 ~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
.+.++....+.+...+-...+..+.+.-+...++.+.+.+.+..+..++.+||+|+|+..|+.++.++
T Consensus 404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999999555588889999999999999999999999999888766543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=343.57 Aligned_cols=409 Identities=20% Similarity=0.278 Sum_probs=312.0
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.+..|.+++++.++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45667777777888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-------
Q 012803 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------- 186 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------- 186 (456)
+++++++++++++++.++++|++.|++.++..+...+++.|++|+++|++.+++...++.+|.++++.++..+
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999888755221
Q ss_pred ----------cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCch---HHH---HHHHHHH
Q 012803 187 ----------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADIS---EEA---AEIREYT 250 (456)
Q Consensus 187 ----------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~ 250 (456)
+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.... ... ...+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 699999998888888888888999999999999999999999999877653211 110 0001000
Q ss_pred HHH-----h-hcC-----------------hhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc-----
Q 012803 251 ETL-----E-RLS-----------------EGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA----- 302 (456)
Q Consensus 251 ~~~-----~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 302 (456)
+.. + +.. ...++++++.+..+..++ ..+.++.....++.+..|+|.++...
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~ 480 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK-LMGVWFTLSFGYYGLSVWFPDMIKHLQADDY 480 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 013455665544444443 33334444445666666666553220
Q ss_pred -------------------------------------CC-----------------------------------------
Q 012803 303 -------------------------------------GF----------------------------------------- 304 (456)
Q Consensus 303 -------------------------------------~~----------------------------------------- 304 (456)
+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 560 (742)
T TIGR01299 481 AALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTD 560 (742)
T ss_pred Hhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccc
Confidence 00
Q ss_pred -----------------------------------CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHH
Q 012803 305 -----------------------------------SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (456)
Q Consensus 305 -----------------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 349 (456)
.......+..++.+++.++.++++||+|||+++..+.++.+++.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~l 640 (742)
T TIGR01299 561 FEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCF 640 (742)
T ss_pred hhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 001234556688899999999999999999999988888888777
Q ss_pred HHHHHH------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012803 350 LAALSF------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 423 (456)
Q Consensus 350 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 423 (456)
++.+.. ...++.+++..+..+...++++|++|++.|++++|+.+...++|.+++|++.+.+.+.....++++.+
T Consensus 641 l~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a 720 (742)
T TIGR01299 641 FLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFAS 720 (742)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 665431 11233344444556778889999999999999999999999999999999999988865555566666
Q ss_pred HHHHHHHHHHHhcccCCCCCC
Q 012803 424 AICSLTVLFVAKLVPETKGRT 444 (456)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~ 444 (456)
++.+++++ ..+++||++++.
T Consensus 721 ~~lll~~l-l~~~LPET~~~~ 740 (742)
T TIGR01299 721 AALACGGL-LALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHH-HHHhCCCCcccc
Confidence 55555444 444568887653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=326.66 Aligned_cols=416 Identities=20% Similarity=0.282 Sum_probs=298.8
Q ss_pred CchhHHHHHHHHHHHhhhhhhccccceecccccccccc-----cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchH
Q 012803 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND-----LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG 105 (456)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~ 105 (456)
.+..+..+.+++++.++.+.++++.+..+...|.+.++ .+.+..+.+++.+.+.++..++++++|+++||+|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~ 87 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR 87 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 45566777788888889999999999888888877664 2455667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhch------hhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHH
Q 012803 106 TMGFSDIVCIIGWVIIVFSKA------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179 (456)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 179 (456)
++.++.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.+++
T Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g 167 (502)
T TIGR00887 88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 78899999999999999999999999999999999999999999999998888
Q ss_pred HHHhcc---------------------------ccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcH-HHHHHHHH
Q 012803 180 YLIGAF---------------------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGI-ESEAALQR 231 (456)
Q Consensus 180 ~~l~~~---------------------------l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~ 231 (456)
+.++.. .+||++|.+.+++.++..+..+++||+|+|+..+++.+ ++.+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 876532 16999999888888887777889999999998877764 35555555
Q ss_pred HhCCCCC-chHHHHHHHHHHHHHhhcChhhHHHHhhhh---hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch
Q 012803 232 LRGADAD-ISEEAAEIREYTETLERLSEGGILELFQRK---YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS 307 (456)
Q Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (456)
....+.+ ..++.++.+ + +++..+.+++++++++ +.++..+.....++.....++....|.|.+++..+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~ 323 (502)
T TIGR00887 248 VLQVKIEAEPDEVEKAS---T-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP 323 (502)
T ss_pred HhccccccCcccccchh---c-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC
Confidence 4432211 111111100 0 0111123567776542 222222222222222211222334445555544444211
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-------HHH--HH-HH
Q 012803 308 ---------------IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-------LFQ--VY-TG 362 (456)
Q Consensus 308 ---------------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~-~~ 362 (456)
.......++.+++.++.++++||+|||+.+..+..+.+++..++.... ... .+ ..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 403 (502)
T TIGR00887 324 AATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQF 403 (502)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 123344456777889999999999999998887777666655544321 011 11 12
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHH
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS-----------STGTFFAFSAICSLTVL 431 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-----------~~~~~~~~~~~~~~~~~ 431 (456)
.+..+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.. ....++++++++++..+
T Consensus 404 ~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 404 FANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 2234556777888999999999999999999999999999999999998832 13355666666665544
Q ss_pred HHHhcccCCCCCCHHHHHhh
Q 012803 432 FVAKLVPETKGRTLEEIQAS 451 (456)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (456)
..+++||+++++.||+++|
T Consensus 484 -~~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 484 -FTLLIPETKGKSLEELSGE 502 (502)
T ss_pred -HheEeccCCCCCHHhhhCC
Confidence 4467799999988877653
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=316.44 Aligned_cols=414 Identities=29% Similarity=0.525 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHhhhhhhccccceeccccccccccc--------CCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHH
Q 012803 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGT 106 (456)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~ 106 (456)
+.....+.+..++.+.++++.+.+++..|.+++++ +.+..+.+++.+.+.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34555666667788999999999999988888877 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH
Q 012803 107 MGFSDIVCIIGWVIIVFS------------KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI 174 (456)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (456)
++++.++++++.+.++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 23567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc------------ccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHH
Q 012803 175 GVSMTYLIGAF------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEE 242 (456)
Q Consensus 175 G~~~~~~l~~~------------l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (456)
|.++++.++.. .+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.+.. ...
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHH
Confidence 99988776532 28999999988888777666788999999988777777766665555432211 111
Q ss_pred HHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHH
Q 012803 243 AAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIP 319 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 319 (456)
.++.++..++.+ ......+. ..............+......+...+|.+.+.+..+.+. .......++..++
T Consensus 247 ~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 111111100000 00011111 111111222222233333334455667777766666543 3555667788899
Q ss_pred HHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-------HH---H-HHHHHhcccccccceeeecccCCccchhhH
Q 012803 320 MTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-------LF---Q-VYTGSFSLGMGGIPWVIMSEVFPINMKGSA 388 (456)
Q Consensus 320 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
+.++.++++||+|||+.+..+.++.+++.+++.... .. . .+...+..+..+..+.+++|.+|+++|+++
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 401 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 401 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHH
Confidence 999999999999999999999888888776654321 00 1 111222233457778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH------h-hhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhcCC
Q 012803 389 GSLVTLVSWLGSWIISFTFNFLM------K-WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 454 (456)
Q Consensus 389 ~g~~~~~~~~g~~i~~~~~g~l~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
.|+.+...+++.++++.+.+.+. + .+....+++.++++++.+++.+++.+|+|+++.+|.++++++
T Consensus 402 ~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 99999999999999988877665 2 344455666676777777777777889998888887776543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=310.98 Aligned_cols=414 Identities=33% Similarity=0.605 Sum_probs=308.2
Q ss_pred hhHHHHHHHHHHHhhhhhhccccceecccccccccccCCC--------hhhHHHHHHHHHHHHHHHHHHHhhhhcccCch
Q 012803 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLS--------VAEYSLFGSILTIGAMIGAIMSGKIADYIGRR 104 (456)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r 104 (456)
..++.+...++..++.+..+++.....+..|.+.++++.+ ..+.+++.+.+.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 4466666677777788888888888899999888888877 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHH
Q 012803 105 GTMGFSDIVCIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181 (456)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (456)
++++.+.+++.++.+++.+.. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999986644 45589999999999999999999999999999999999999999999999999999
Q ss_pred Hh---ccc----cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHH---HHHH
Q 012803 182 IG---AFL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIR---EYTE 251 (456)
Q Consensus 182 l~---~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 251 (456)
++ ... +||+.|++.++..++..+..+++||+|++...+++.++..+..++....+....+...... ...+
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 443 9999999977777777777788899998877766666655555444333322221111110 0111
Q ss_pred HHhhcChhhHHHHhhhh--hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHH
Q 012803 252 TLERLSEGGILELFQRK--YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVL 326 (456)
Q Consensus 252 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~ 326 (456)
.+.+..+..+.+.++.. ..+...+...+..+...........+.+.+.+..+.+. +.......++.+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112233333321 23444455555555555555666777777777766655 46677778888999999999
Q ss_pred HHhhcCCcchhhhhhHHHHHHHHHHHHH-----------------HHHHHHHHHhcccccccceeeecccCCccchhhHh
Q 012803 327 LMDKSGRRPLLLVSAAGTCLGCLLAALS-----------------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAG 389 (456)
Q Consensus 327 l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
++||++||+.+..+..+.+++.+.+... ....++...+..+..+....+..|.+|++.|+++.
T Consensus 342 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (481)
T TIGR00879 342 LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421 (481)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHH
Confidence 9999999999888877777766655421 11112333344445577778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 012803 390 SLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETKGRTLE 446 (456)
Q Consensus 390 g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
|+.+...++|.+++|.+.+.+.+. +....+++.++++++.+++..++.+|+++++.+
T Consensus 422 ~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 422 SIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999884 555556677777777777666677777665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=314.72 Aligned_cols=381 Identities=22% Similarity=0.307 Sum_probs=295.2
Q ss_pred ccccccccccCCC---hhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 60 PAQSGITNDLGLS---VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 60 ~~~~~i~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
+..|.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5678899999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHhHHHHHHHHHHhhccCCChhH
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-~w~~~f~~~~~~~l~~~~~~~~~~~~p~~ 215 (456)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.|++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998776 89999999998888777777889999999
Q ss_pred HHhcCCcHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHh
Q 012803 216 LAKTGKGIESEAALQRLRGADADISEE-AAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY 294 (456)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (456)
+..+++.+++.+..++..+.+.....+ ........+..++.++.+.+++++++.++...+...+.++.....+...+.+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999888888777665443322111 1111111111111223577888988888777766655555433333333333
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--------HHHHHHHHhcc
Q 012803 295 ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF--------LFQVYTGSFSL 366 (456)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 366 (456)
.+ ..+.+........++..+++.++.+++.||+|||+.+..+.++.+++.+++.... ...++..++..
T Consensus 350 ~~----~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (505)
T TIGR00898 350 LG----NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT 425 (505)
T ss_pred cc----ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 32 2233444556667788899999999999999999999888888777766655421 11122223333
Q ss_pred cccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 012803 367 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLE 446 (456)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
+.++..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.+....+++++++.++.+++ .++++|+++++.+
T Consensus 426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~ 503 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCC
Confidence 445677788999999999999999999999999999999999 65665666677766666665554 4567888776543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=300.54 Aligned_cols=423 Identities=36% Similarity=0.609 Sum_probs=346.9
Q ss_pred chhHHHHHHHHHHHhhhhhhccc--cceeccccccccccc-----CCCh--hhHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSA--IGYSSPAQSGITNDL-----GLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIG 102 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~-----~~~~--~~~~~~~s~~~~~~~~~~~~~G~l~dr~G 102 (456)
..........+....+.+..+++ .+...+..+.+.++. ..+. .+.+|+.+.+.++..++++++|+++|++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777777888888886 667777777666643 2222 35599999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012803 103 RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI 182 (456)
Q Consensus 103 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 182 (456)
||+.++++.+.+.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..+
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hccc-----cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCC-CCCchHHHHHHHHHH-HHH-h
Q 012803 183 GAFL-----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA-DADISEEAAEIREYT-ETL-E 254 (456)
Q Consensus 183 ~~~l-----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~-~ 254 (456)
+... +||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++.+. +++.+.+....+... .+. .
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEV 277 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhc
Confidence 7776 6999999999998887777888999999999999999999999999883 444444444444111 111 1
Q ss_pred hcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCc--hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012803 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG--SIGMIAMVVIQIPMTLLGVLLMDKSG 332 (456)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g 332 (456)
...+..+.++++....++..+...+..+.++.+.+...+|.+.+++..+... .......++..+++..++..+.||+|
T Consensus 278 ~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~g 357 (513)
T KOG0254|consen 278 AEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFG 357 (513)
T ss_pred ccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1222246667765567778888899999999999999999999999988774 46677777888888899999999999
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHH-------------------HHHHHHHhcccccccceeeecccCCccchhhHhHHHH
Q 012803 333 RRPLLLVSAAGTCLGCLLAALSFL-------------------FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT 393 (456)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 393 (456)
||+.++.+...+.++.++++.... ..++...+..+.+++.+.+.+|.+|.+.|+++.++..
T Consensus 358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~ 437 (513)
T KOG0254|consen 358 RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV 437 (513)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence 999999999999998888765421 1155566777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHH-HHHhcccCCCCCCHHHHHhhcCC
Q 012803 394 LVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLTVL-FVAKLVPETKGRTLEEIQASMNP 454 (456)
Q Consensus 394 ~~~~~g~~i~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
..+++...+-......+.+... ...+..+++++.+... ..+...||+|+++.+|+++.+++
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 9999888887777766666443 5667777777777766 78888999999999998875543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=287.15 Aligned_cols=386 Identities=20% Similarity=0.231 Sum_probs=297.1
Q ss_pred CchhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHH
Q 012803 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS 110 (456)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 110 (456)
++.+++....+++-+.+.++.+-++ +...|.+.+|.++|.+|.|++.+.+.+.|.++..+.|.++||.++|..+.+|
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF---~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNF---NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 4455666677777777777777777 4566679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh--ccc--
Q 012803 111 DIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG--AFL-- 186 (456)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l-- 186 (456)
+++.++.+++++++++.+.+.++.+++|+.+|.-.|++...++.|++++|||+..++++++-++|..+.|++. +++
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888887 554
Q ss_pred --cchHHHHHhHHHHHH-HHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhc-----Ch
Q 012803 187 --NWRILALIGTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERL-----SE 258 (456)
Q Consensus 187 --~w~~~f~~~~~~~l~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 258 (456)
+||..|++.++++++ +++.++..+|+|+..--. +.++..++..+..+++++. .+
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP------------------~ie~~~~d~~e~~~~~~~~~~ls~~~ 242 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP------------------PIEEYRGDPLEIYEEEKENEGLTAWQ 242 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC------------------CHHHhhcCchhhhhhhccCCCccHHH
Confidence 899999999998876 556667788888421100 0000000000000111111 12
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhc--CCcch
Q 012803 259 GGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS--GRRPL 336 (456)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 336 (456)
.-.+-+++||..|.+.++..+.+..-++...+.|.|+.+..+.+..+++.....+-.++++|+++.|+++||+ |||..
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 2344567899999999999999999999999999999887666666777899999999999999999999997 56655
Q ss_pred hhhhh-HHHHHHHHHHHHH--------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHH-HHHHHHHH
Q 012803 337 LLVSA-AGTCLGCLLAALS--------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFT 406 (456)
Q Consensus 337 ~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~ 406 (456)
..+.+ +...++.+.+... .......+++..|..-+.-....|..|.+..|++.|+...++++ |.+.+...
T Consensus 323 ~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 323 MALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 44333 3333333333322 12224455555555555566788999999999999999999998 99999999
Q ss_pred HHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcc
Q 012803 407 FNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 407 ~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
.|++.|. ++...+.++.+.++++.++.....
T Consensus 403 ~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 403 LGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred ceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999885 555566666555555554444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=284.62 Aligned_cols=361 Identities=17% Similarity=0.131 Sum_probs=283.0
Q ss_pred HHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHH
Q 012803 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (456)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 117 (456)
+...+.+.++.|..+.+..+....+|++.+|+|+|..+.|+..|.|.+++.++.|+...+.||+.||++++..+.++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 34455566777778888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHH
Q 012803 118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILAL 193 (456)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~ 193 (456)
++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++ |||+.|+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888776 9999999
Q ss_pred HhHHHHHHHHHH-hhccC-CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhh
Q 012803 194 IGTIPCLVQLIG-LCFIP-ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271 (456)
Q Consensus 194 ~~~~~~l~~~~~-~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (456)
..+.++++..+. +..+| .+++ +.++.+..+..+++|++..+
T Consensus 172 ~ia~l~ll~~~~~~~~lP~~~~~-------------------------------------~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 172 AIAVLALLALLLLWKLLPPSEIS-------------------------------------GSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCccCC-------------------------------------CCCCcchhHHHHHhcCchHH
Confidence 999998876544 46778 1110 00111222345678888888
Q ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHH
Q 012803 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLA 351 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 351 (456)
..+....+.+..++..++++..++.+..+.+....++....++++.++|+.++|++.|| +.|+.+.....+.++.++.+
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l 293 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLAL 293 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence 88888888877766666555555554444444445588999999999999999999999 88888888877777777766
Q ss_pred HHHHH----HHHHHHHhcccccccceeeecccCC--ccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 012803 352 ALSFL----FQVYTGSFSLGMGGIPWVIMSEVFP--INMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAI 425 (456)
Q Consensus 352 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~ 425 (456)
.+... .............+....+..+..+ ++.++.+.+++....++|..+|..++|.+.|+.++......++.
T Consensus 294 ~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~ 373 (394)
T COG2814 294 TFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAA 373 (394)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 55411 1111112233333444444433333 58899999999999999999999999999996555555555555
Q ss_pred HHHHHHHHHhc
Q 012803 426 CSLTVLFVAKL 436 (456)
Q Consensus 426 ~~~~~~~~~~~ 436 (456)
..+.+......
T Consensus 374 l~~~a~~~~~~ 384 (394)
T COG2814 374 LLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=302.41 Aligned_cols=357 Identities=18% Similarity=0.103 Sum_probs=242.2
Q ss_pred HHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH
Q 012803 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (456)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 121 (456)
.+..++.+....+....++..|.+.+|+|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..
T Consensus 32 ~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 111 (467)
T PRK09556 32 LVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGF 111 (467)
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHH
Confidence 33333333333344455677888999999999999999999999999999999999999999999999988888877776
Q ss_pred HH-----hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-------cch
Q 012803 122 VF-----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------NWR 189 (456)
Q Consensus 122 ~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-------~w~ 189 (456)
++ ++|++.+++.|+++|++.+...|...++++||+|+++|+++++++..+.++|.++++.+..++ +||
T Consensus 112 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~ 191 (467)
T PRK09556 112 GASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVI 191 (467)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcch
Confidence 65 589999999999999999999999999999999999999999999999999999998876432 589
Q ss_pred HHHHHhHHHHHHH-HHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhh-HHHHhhh
Q 012803 190 ILALIGTIPCLVQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG-ILELFQR 267 (456)
Q Consensus 190 ~~f~~~~~~~l~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 267 (456)
..|.+.+++.++. ++.+++.+++|+.... .++ ++. ..+. ..++.+ ..+..+...... .+..+++
T Consensus 192 ~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~---~~~-~~~---~~~~---~~~~~~----~~~~~~~~~~~~~~~~~l~~ 257 (467)
T PRK09556 192 GMFIFPSIIALIIGFIGLRYGSDSPEELGW---GKA-EEI---FGEP---ISEEDK----ETESTDMTKWQIFVEYVLKN 257 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCChhhcCC---CCh-hhc---ccCc---cchhhh----ccccccCcHHHHHHHHHHcC
Confidence 8888877776654 4444556776642110 000 000 0000 000000 000000000011 1235677
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHH
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLG 347 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 347 (456)
+.+|...+..++..........+.|.|+.+.++.+....+.......++.+++.++.|+++||++||+..........++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII 337 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 77777766666555554444445555554433322223346667778889999999999999999988766544333332
Q ss_pred HHHHHHH----H----HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHH-HHHHHHHHHHHHHh
Q 012803 348 CLLAALS----F----LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFTFNFLMK 412 (456)
Q Consensus 348 ~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~g~l~~ 412 (456)
...+... . ...+..+.+..+..........|.+|++.+|++.|+.+...++ |.+++|.+.|++.|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 2221111 0 1111122222222222235566999999999999999999997 77999999999999
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=296.58 Aligned_cols=378 Identities=16% Similarity=0.148 Sum_probs=251.7
Q ss_pred HHHHHHhhhhhhccccceecccccccccccCCChhh-HHH-----HHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAE-YSL-----FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-----~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
......++++++.++...++...|.+.++++.+.++ .++ +.++.++++.++++++|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345556788889999999888999999998644322 122 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhH--------HHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhc-
Q 012803 114 CIIGWVIIVFSKAAWW--------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA- 184 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~- 184 (456)
++++++++++++|+++ ++++|+++|++.|...+...+++.|++|+++|+++.++...+..+|..+++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8999999999999999999999999999999999999999888888877764432
Q ss_pred -----------cccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 012803 185 -----------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL 253 (456)
Q Consensus 185 -----------~l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
..|||+.|++.+++.++..+....+||+|++...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccc
Confidence 2389999999877777666666778999986543221110000 000
Q ss_pred hhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHH-cCCCc---hHHHHHHHHHHHHHHHHHHHHHh
Q 012803 254 ERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMD 329 (456)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 329 (456)
++.++.++++++++. .+.......... .....++....|.+.++.. .+.+. ........++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATKH-WRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHHh-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122345555431 122222111111 1111223334445554432 24332 34556667788889999999999
Q ss_pred hcCCcchhhhhhHHHHHHHHH-HHHHH---H-----HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHH
Q 012803 330 KSGRRPLLLVSAAGTCLGCLL-AALSF---L-----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 400 (456)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~-~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 400 (456)
|+|||+.+..+.++..++... +.... . ..++.+++.....+....+..|.+|++.|+++.|+.+....+++
T Consensus 312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 312 RFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA 391 (490)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence 999999877766543322221 11110 0 11112222222234455677789999999999998777788888
Q ss_pred HHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 012803 401 WIISFTFNFLMKWS--STGTFFAFSAICSLTVLFVAKLVPETKGR 443 (456)
Q Consensus 401 ~i~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
.++|.+.+++.+.. ....++...+.+++.. +..++.||++++
T Consensus 392 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~pes~~~ 435 (490)
T PRK10642 392 GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHhccccCC
Confidence 99999999998732 2333343343333333 334445665443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=286.07 Aligned_cols=349 Identities=13% Similarity=0.097 Sum_probs=250.4
Q ss_pred hhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhh
Q 012803 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128 (456)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 128 (456)
+....+.....+.+|.+.+|+|.++++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 98 (390)
T PRK03545 19 FIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFT 98 (390)
T ss_pred HHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33333444456778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~ 204 (456)
+++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+ |||+.|++.+++.++..+
T Consensus 99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 9999999999999988899999999999999999999999999999999999988765 999999998887766544
Q ss_pred H-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHH
Q 012803 205 G-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (456)
Q Consensus 205 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (456)
. ...+||+|+ +++ ....+.++.+|++.++......++....
T Consensus 179 ~~~~~~~~~~~-----~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (390)
T PRK03545 179 LLIKLLPLLPS-----EHS---------------------------------GSLKSLPLLFRRPALVSLYLLTVVVVTA 220 (390)
T ss_pred HHHHhCCCCCC-----CCc---------------------------------chHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3 344566432 000 0001134566777666555444444433
Q ss_pred HhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHH-HHH------H
Q 012803 284 QFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA-LSF------L 356 (456)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~------~ 356 (456)
........+.+.....+.+....+.......++.++++++.+++.||+++|.. ..+..+..++...+. ... .
T Consensus 221 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (390)
T PRK03545 221 HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSV 299 (390)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 33333333333332222222234466777888999999999999999998764 344444333333222 111 1
Q ss_pred HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHh
Q 012803 357 FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS-STGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 435 (456)
..++.++......+.......+..| +.++++.|+++...++|..+||.+.|.+.|.. ....++..+.+.++..++.+.
T Consensus 300 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 300 LSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 1122333333334545566677766 68899999999999999999999999999944 444455555544444444444
Q ss_pred cc
Q 012803 436 LV 437 (456)
Q Consensus 436 ~~ 437 (456)
..
T Consensus 379 ~~ 380 (390)
T PRK03545 379 IF 380 (390)
T ss_pred Hc
Confidence 33
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=292.89 Aligned_cols=384 Identities=19% Similarity=0.191 Sum_probs=254.4
Q ss_pred HhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 012803 45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124 (456)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 124 (456)
.++.+....+....++.+|.+.+++|++.++.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 33334434444445677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHH
Q 012803 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (456)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l 200 (456)
++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+ |||+.|++.+++.+
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~ 188 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAI 188 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999887765 99999999887766
Q ss_pred HH-HHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhH-HHHhhhhhhhHHHHHHH
Q 012803 201 VQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGI-LELFQRKYAHSLIVGVG 278 (456)
Q Consensus 201 ~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 278 (456)
+. ++..++++|+|++...+...++..+ ..+.. ++ .+..+.+.+..+ ...++++.++.......
T Consensus 189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (434)
T PRK11663 189 VVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------ALELA---QQ-QEGAGLSRKEILTKYVLLNPYIWLLSFSYV 253 (434)
T ss_pred HHHHHHHHHcCCCHhhcCCCCccccccc-----------ccccc---hh-ccccCCChhhhHHHHHhcChHHHHHHHHHH
Confidence 54 4444567887753211110000000 00000 00 000000000111 12445666666555554
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcC--Ccchh-hhhhHHHHHHHHH---HH
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSG--RRPLL-LVSAAGTCLGCLL---AA 352 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~-~~~~~~~~~~~~~---~~ 352 (456)
+....+.....+++.|+....+......+.......++.++++++.|+++||+. +|+.. ........+.... +.
T Consensus 254 ~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK11663 254 LVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc
Confidence 444443333333444433222222223346677788899999999999999983 33332 1111111111111 11
Q ss_pred HH-H----HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHH
Q 012803 353 LS-F----LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAIC 426 (456)
Q Consensus 353 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~ 426 (456)
.. . ...+..+.+..+..........|..|++.++++.|+.+...++|.+++|.+.|++.| .+....+...+++.
T Consensus 334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~ 413 (434)
T PRK11663 334 FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAA 413 (434)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHH
Confidence 10 0 001111222222222233456789999999999999999999999999999999999 44455556666666
Q ss_pred HHHHHHHHhcccCCCCC
Q 012803 427 SLTVLFVAKLVPETKGR 443 (456)
Q Consensus 427 ~~~~~~~~~~~~~~~~~ 443 (456)
++.++..+...++++++
T Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 414 GISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHHhhhchh
Confidence 66665555555544443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=286.38 Aligned_cols=343 Identities=20% Similarity=0.253 Sum_probs=256.0
Q ss_pred HHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHH
Q 012803 36 AVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI 115 (456)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 115 (456)
+.+....+.++..+.++++....++..|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 45556666666677777777777888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHH
Q 012803 116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRIL 191 (456)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~ 191 (456)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 171 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI 171 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887554 89999
Q ss_pred HHHhHHHHHHHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhh---h
Q 012803 192 ALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ---R 267 (456)
Q Consensus 192 f~~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 267 (456)
|++.++..++.. +...++||+|++..++++.++.++ .....++ .
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~ 219 (406)
T PRK11551 172 FYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP--------------------------------VLRALFGEGRA 219 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh--------------------------------hHHHHhhhhhh
Confidence 998877655544 344667888754322111000000 0000111 1
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHH
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 344 (456)
+..+......++.... ......|.+.+.++.+.+ .+.......++.++++++.|++.||+++|+.+..+....
T Consensus 220 ~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~ 295 (406)
T PRK11551 220 TATLLLWISYFFTLIV----LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGI 295 (406)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111222222222222 222334455555555543 347777788899999999999999999999887766655
Q ss_pred HHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012803 345 CLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS 414 (456)
Q Consensus 345 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 414 (456)
+++...+... ....++.+.+..+..+..+++..|.+|+++|+++.|+.+...++|..++|.+.|.+.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 296 LASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 5554444322 111233333344445667788899999999999999999999999999999999999853
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=283.06 Aligned_cols=362 Identities=18% Similarity=0.170 Sum_probs=240.0
Q ss_pred HHHHHHHHHhhhhhhccccceecccccccccccC---CChhhHHHHH---HHHHHHHHHHHHHHhhhhcccCchHHHHHH
Q 012803 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLG---LSVAEYSLFG---SILTIGAMIGAIMSGKIADYIGRRGTMGFS 110 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~---s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 110 (456)
++.......++.+.+.++...++...|.+.++++ .+..+.+... +..+++..++++++|+++||+|||+++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3334455556677777888887888888999984 5555544444 444555559999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhh--------HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012803 111 DIVCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI 182 (456)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 182 (456)
.++++++++++++++++. .++++|+++|++.|...+...++++|++|+++|+++.++.+.+...|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 589999999999999999999999999999999999999988888887777654
Q ss_pred hc------------cccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 012803 183 GA------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYT 250 (456)
Q Consensus 183 ~~------------~l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (456)
.. ..|||++|++.+++.++.......+||+|++..+
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~-------------------------------- 227 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR-------------------------------- 227 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--------------------------------
Confidence 32 2389999999888877766555667776542100
Q ss_pred HHHhhcChhhHHHHhhhhhhhHHHHHHHHH-HHHHhccchhhHHhHHHHHHH-cCCCc---hHHHHHHHHHHHHHHHHHH
Q 012803 251 ETLERLSEGGILELFQRKYAHSLIVGVGLM-VLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGV 325 (456)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g 325 (456)
++++..+++++++++..+...+...+. .... +.+..|.+.++.+ .+.+. +.......+...++.++.|
T Consensus 228 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 228 ---ALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCF----YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred ---hhcccccHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112356677766655444433322 2222 2233445554432 34433 3455555667778888889
Q ss_pred HHHhhcCCcchhhhhhHHHHHHHHHHHH--H----HHH--H-HHHHHhccc-ccccceeeecccCCccchhhHhHHHHHH
Q 012803 326 LLMDKSGRRPLLLVSAAGTCLGCLLAAL--S----FLF--Q-VYTGSFSLG-MGGIPWVIMSEVFPINMKGSAGSLVTLV 395 (456)
Q Consensus 326 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~--~----~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 395 (456)
+++||++||+.+..+..+.++....+.. . ... . .....+..+ ..+..+.+.+|.+|++.|+++.|+.+..
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 9999999998876655543332221111 0 010 0 111111111 2244567789999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 012803 396 SWL-GSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 396 ~~~-g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
.++ .+...|.+.+.+.+.+.+...+++.+...+.+.+..+++
T Consensus 381 g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 381 ANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 775 344578888866444434433333333333333333333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=281.64 Aligned_cols=350 Identities=13% Similarity=0.090 Sum_probs=250.4
Q ss_pred ceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 012803 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (456)
Q Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (456)
...++.+|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~ 105 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL 105 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHhhcc-
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFI- 209 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~~~~- 209 (456)
++|++.+...+...+++.+++| ++|+++++.+..+...|..+++.++..+ +||+.+.+.++..++..+.++..
T Consensus 106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T PRK09705 106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS 184 (393)
T ss_pred HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997 7799999999988888877777776553 79998877666555444333332
Q ss_pred CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccch
Q 012803 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (456)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (456)
++.|+ +++ + ++....+.++++..+.......+....+.....
T Consensus 185 ~~~~~----~~~---------------------------------~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 226 (393)
T PRK09705 185 AREVA----SSH---------------------------------K-TTTTPVRVVFTPRAWTLGVYFGLINGGYASLIA 226 (393)
T ss_pred cCCCc----ccc---------------------------------C-CCcCCcccccCHhHHHHHHHHHHHHHHHHHHHH
Confidence 22221 000 0 000112234455555555544444444433444
Q ss_pred hhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHh
Q 012803 290 GIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSF 364 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 364 (456)
+.+.|+.+ .+......+.......++.++++++.+++.||++||+....+..+.+++..++... .....+.+..
T Consensus 227 ~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g 305 (393)
T PRK09705 227 WLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLG 305 (393)
T ss_pred HHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 44444432 22222234477788889999999999999999999998888777766665544321 1111222333
Q ss_pred cccccccceeeecccC-CccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhh-HHHHHHHHHHHHHHHHHhcccCCC
Q 012803 365 SLGMGGIPWVIMSEVF-PINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTG-TFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 365 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
..+..+.......+.. |++++++..|+.+...+++..++|.+.|++.|. +.+. .+.+.+.++++..+..+.+.+|++
T Consensus 306 ~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 306 LGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred ccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3333454444555555 467899999999999999999999999999994 3333 344445555555555566667766
Q ss_pred CCCH
Q 012803 442 GRTL 445 (456)
Q Consensus 442 ~~~~ 445 (456)
++.+
T Consensus 386 ~~~~ 389 (393)
T PRK09705 386 PQLW 389 (393)
T ss_pred cchh
Confidence 5543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=283.90 Aligned_cols=351 Identities=20% Similarity=0.201 Sum_probs=253.5
Q ss_pred HHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHH
Q 012803 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (456)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 120 (456)
.....++.+.++++.....+..|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34455555666777777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhH
Q 012803 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (456)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~ 196 (456)
++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+.++|.++++.+...+ +||+.|++..
T Consensus 100 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 100 SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877554 9999998865
Q ss_pred HHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHH
Q 012803 197 IPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276 (456)
Q Consensus 197 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (456)
+..++........||++++..++.+. .++.. +...+.....++++++++.++.....
T Consensus 180 ~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
T PRK12307 180 LPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS-----------QSAWSVFSLSMKGLFNRAQFPLTLCV 236 (426)
T ss_pred HHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc-----------ccchhhhhHHHHHHHhhchHHHHHHH
Confidence 44443333333446654332111000 00000 00000112245667777766654443
Q ss_pred HHHHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH
Q 012803 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL 353 (456)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 353 (456)
...... .+.....+..+.+.++...+.+. +.......++.++++++.+++.||++||+....+.++.++..+.+..
T Consensus 237 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 315 (426)
T PRK12307 237 FIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFR 315 (426)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 332222 12222223344555555555543 35566777889999999999999999999888777666555443332
Q ss_pred HH-----HH-HHHHHH--hcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012803 354 SF-----LF-QVYTGS--FSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 354 ~~-----~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
.. .. ....+. ...+..+..+.++.|.+|++.||++.|+.+...++++.++|.+.|++.+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 316 IPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 10 11 111111 1223344556778899999999999999999999999999999999998544
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=282.07 Aligned_cols=370 Identities=18% Similarity=0.149 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHH
Q 012803 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (456)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~ 114 (456)
++.+.......++.+.++++....++..|.+++++|++..+.+++.+.+.++..+++++.|.++||+|||+++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444555566666777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c--c
Q 012803 115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--W 188 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~--w 188 (456)
+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++..+ + |
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887665 4 9
Q ss_pred hHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhh
Q 012803 189 RILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268 (456)
Q Consensus 189 ~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (456)
|+.|++.++..++..+....+||++++..++++.++..+..++..+....... . .++.....++..+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~ 236 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN---I--------VMTLAAAMVQSAGKR 236 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh---h--------hhhhhHHhhhhhhhh
Confidence 99999877766666666677888775443222211111111111110000000 0 000000011100111
Q ss_pred h--hhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHH
Q 012803 269 Y--AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCL 346 (456)
Q Consensus 269 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 346 (456)
. +.....................+.|.....+......+.......++.+++.++.+++.||++||+.+..+....++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 237 WPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHH
Confidence 0 11111111122222222233344444332222222334667778889999999999999999999988777665433
Q ss_pred HHHHHHHH------HHH-HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012803 347 GCLLAALS------FLF-QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 347 ~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
........ ... ..+.+.+..+..+....+++|..|+++|+++.|+.+...++|..++|.+.|.+.|..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 317 LIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22221111 111 1223344445556677888999999999999999999999999999999999999544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=282.97 Aligned_cols=368 Identities=15% Similarity=0.159 Sum_probs=247.2
Q ss_pred hhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHH
Q 012803 33 ATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDI 112 (456)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~ 112 (456)
.+|+....+++.++..+.++.+. +...|.+.+|+|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINI---GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhH---HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 34555555555555555555555 556667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc-------
Q 012803 113 VCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------- 185 (456)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------- 185 (456)
+++++++++++++|++++++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++.+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999888999999999999999999999999999999888753
Q ss_pred ---ccchHHHHHhHHHHHHH-HHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhH
Q 012803 186 ---LNWRILALIGTIPCLVQ-LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGI 261 (456)
Q Consensus 186 ---l~w~~~f~~~~~~~l~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (456)
.|||+.|++.+++.++. .+.++++||+|+.... -+.++.+...+..+....+.++..... ++.+...+..+
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 236 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQLTLEQPEGAF----AHAAMPQRSML 236 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhcccccccccccc----ccccccHHHHH
Confidence 28999999988887664 4455678888742100 001111111111111100000000000 00000011123
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc--CC---CchHHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q 012803 262 LELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--GF---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL 336 (456)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 336 (456)
++++ ++.++......++.... ...+..|.|.++++. +. ..+.......++.+++.++.|+++||+++|+.
T Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 237 REIF-TPAIMLYTLAYFCLTNT----LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHhc-ChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 3333 34444444433333333 333445555555542 22 23466788888999999999999999997764
Q ss_pred h-hhhhHHHHHHHHHHHHH---HHH--HHHHH-HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHH
Q 012803 337 L-LVSAAGTCLGCLLAALS---FLF--QVYTG-SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNF 409 (456)
Q Consensus 337 ~-~~~~~~~~~~~~~~~~~---~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 409 (456)
. ........++.++.... ... .+... .......+..+....|.+|+++|+++.|+.+...++|++++|.+.|.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 312 HTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 3 33333333332221111 000 01111 11111123344556778899999999999999999999999999999
Q ss_pred HHhh
Q 012803 410 LMKW 413 (456)
Q Consensus 410 l~~~ 413 (456)
+.|.
T Consensus 392 i~~~ 395 (412)
T TIGR02332 392 LKDA 395 (412)
T ss_pred cccc
Confidence 9994
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=252.50 Aligned_cols=406 Identities=20% Similarity=0.241 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHH
Q 012803 35 SAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (456)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~ 114 (456)
+.++...+....+...+..-.-..+-+.|.+.+.+|.+..|..++......+..+++..+|..+|++|||+.+.+..+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 44455555555555544433333344556688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchH
Q 012803 115 IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRI 190 (456)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~ 190 (456)
++...+.+.++|+.++.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++... ||||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999998 888888999999999998776666 77888888887776544 9999
Q ss_pred HHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchH--------------HHHHHHHHHHHHhhc
Q 012803 191 LALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISE--------------EAAEIREYTETLERL 256 (456)
Q Consensus 191 ~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 256 (456)
.....+.+..+.....+++||+||+...+++++++.+.++++...|..... +..+..+...+..++
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke 311 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE 311 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence 988888888888888899999999999999999999999888765542211 111111111122233
Q ss_pred ChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc--------------------CCCc---hHHHHHH
Q 012803 257 SEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--------------------GFSG---SIGMIAM 313 (456)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~---~~~~~~~ 313 (456)
......+++..+..+..+......+...+ .++.........++.. ..+. -.-..+.
T Consensus 312 ~rg~~~nLlsp~lrkttlllw~iwfgnaf-syyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllit 390 (528)
T KOG0253|consen 312 VRGGTTNLLSPKLRKTTLLLWRIWFGNAF-SYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLIT 390 (528)
T ss_pred cccchHhhcChHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHH
Confidence 45566667655444443333322222111 1222222222222111 0111 1345677
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccchhh
Q 012803 314 VVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGS 387 (456)
Q Consensus 314 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
.+..++|.++.+++.||+|||+.+..+.+++++..+++... ....+..-++..+.+.+.+.|..|++|+..|++
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 88999999999999999999999999999998887777654 223344556677778899999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 012803 388 AGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPETKGRT 444 (456)
Q Consensus 388 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
+.|.+...+++|+++.|.++ ...+.....+..++++++++.++...++-.|+|+|.
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 99999999999999999999 555566667788888888888888888777888875
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=271.48 Aligned_cols=338 Identities=15% Similarity=0.097 Sum_probs=234.5
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
.++|.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++++++.|++
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999988765555544443333334799999999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHH-HHHhhccCC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQ-LIGLCFIPE 211 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~-~~~~~~~~~ 211 (456)
+|++.+. .+.....++|++|+++|++++++.+.+.++|.+++++++..+ |||+.|++.++++++. ++.++++||
T Consensus 89 ~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 89 AALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999986 455556669999999999999999999999999999888777 9999999988777664 445567899
Q ss_pred ChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhh
Q 012803 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI 291 (456)
Q Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (456)
+|++.. +. .+.+ + ...+++++++++.++...+..++.....+...+
T Consensus 168 ~p~~~~---~~----------------~~~~--------~-----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-- 213 (368)
T TIGR00903 168 LPFQAA---EG----------------FGFK--------D-----AVKEFGALAGRKDLWIIGAILGFGVALFDNLAI-- 213 (368)
T ss_pred CCCCCC---CC----------------cchH--------H-----HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH--
Confidence 875311 00 0000 0 001356788888888887777776666554444
Q ss_pred HHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc---chhhh-hhHHHHHHHHHHHHH------HHHHHHH
Q 012803 292 AFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR---PLLLV-SAAGTCLGCLLAALS------FLFQVYT 361 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~------~~~~~~~ 361 (456)
|+|.++++.+.+.. ......+..+.+.+..++++||..|| +.... ...+.++....+... .....+.
T Consensus 214 --wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 290 (368)
T TIGR00903 214 --WLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIA 290 (368)
T ss_pred --HHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 45555544444332 22223333344444457788887653 22222 233333333232221 1111222
Q ss_pred HHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012803 362 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
+++..+..+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +....+..+++..++.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 291 GLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 233333445677889999999999999999999999999999999988874 44455666666666655554
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=276.62 Aligned_cols=375 Identities=16% Similarity=0.139 Sum_probs=241.5
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGR 134 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r 134 (456)
...+|.+.++ |++..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+++++++ +++.+++.|
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 127 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 4566778888 99999999999999999999999999999999999999999999999999888763 788899999
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHH-HHHHHhcc----ccchHHHHHhHHHHHHH-HHHhhc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGAF----LNWRILALIGTIPCLVQ-LIGLCF 208 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~----l~w~~~f~~~~~~~l~~-~~~~~~ 208 (456)
++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+|+++.. .+||+.|++.+++.++. ++..++
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~ 207 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAM 207 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888889999999999999999999998864 45554322 29999999988776664 455567
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhh-HHHHhhhhhhhHHHHHHHHHHHHHhcc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGG-ILELFQRKYAHSLIVGVGLMVLQQFGG 287 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
+||+|+....+++ ++.++ +... +.+ + .++++.+.+.. ...+++++.+|...+..++.....+..
T Consensus 208 ~~~~~~~~~~~~~-~~~~~---~~~~-------~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (452)
T PRK11273 208 MRDTPQSCGLPPI-EEYKN---DYPD-------DYN---E-KHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI 272 (452)
T ss_pred ccCCHhhcCCCCh-hhhhh---cccc-------ccc---c-ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 7887753211100 00000 0000 000 0 00000000111 123556777777666666655544444
Q ss_pred chhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhc--CCcchh-hhhhHHHHHHHHHHHHH----H----H
Q 012803 288 VNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLL-LVSAAGTCLGCLLAALS----F----L 356 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~----~----~ 356 (456)
..++|.|+.+..+......+.......++.+++.++.|+++||+ +||+.. .....+..++...+... . .
T Consensus 273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PRK11273 273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA 352 (452)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 44445544433222222334566677788899999999999999 444332 22222222222222111 0 0
Q ss_pred HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHH-HHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHH
Q 012803 357 FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI-ISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVA 434 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i-~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~ 434 (456)
.....+....+.......+..|.+|++.+|++.|+.+...++|+.+ +|.+.|.+.|. ++...+++.+++++++.+...
T Consensus 353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 0111111111112222345679999999999999999999998765 79999999994 444555555555555544443
Q ss_pred hcccCCCCCCHHHHHh
Q 012803 435 KLVPETKGRTLEEIQA 450 (456)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (456)
. ..+.++|++||.-+
T Consensus 433 ~-~~~~~~~~~~~~~~ 447 (452)
T PRK11273 433 V-VMIGEKRHHEELLQ 447 (452)
T ss_pred H-HhccccchHHHHHh
Confidence 3 33444445555433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=272.40 Aligned_cols=366 Identities=15% Similarity=0.115 Sum_probs=239.9
Q ss_pred HHHHHHhhhhhhccccceecccccc-ccccc--CCChhhHHHHH-----HHHHHHHHHHHHHHhhhhcccCchHHHHHHH
Q 012803 40 STFVAVCGSYVFGSAIGYSSPAQSG-ITNDL--GLSVAEYSLFG-----SILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (456)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~-----s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 111 (456)
......++.+.+.++....+...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+.
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~ 101 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence 4455556777777888776766653 45555 56665 45543 3556778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhh--------HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 012803 112 IVCIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG 183 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 183 (456)
+++++++++++++++++ .++++|+++|++.|...+...+++.|++|+++|++..+....+..+|.+++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 102 WMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 5889999999999999999999999999999999999999999999988886554
Q ss_pred c------------cccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 012803 184 A------------FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTE 251 (456)
Q Consensus 184 ~------------~l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (456)
. ..|||++|++.+++.++........||+|++..++++.++.
T Consensus 182 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-------------------------- 235 (438)
T PRK09952 182 SLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-------------------------- 235 (438)
T ss_pred HHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc--------------------------
Confidence 2 23899999998877666555556678887653322110000
Q ss_pred HHhhcChhhHHHHhhhhhhhHHHHH-HHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHH
Q 012803 252 TLERLSEGGILELFQRKYAHSLIVG-VGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLL 327 (456)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l 327 (456)
+.+....+.++++++.+..... .+...+..+....+.+.|... ..+.+.. ......++..+++.++.|++
T Consensus 236 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~---~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l 309 (438)
T PRK09952 236 ---KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQ---NLGLPRELFLNIGLLVGGLSCLTIPCFAWL 309 (438)
T ss_pred ---cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011123344444333322 222222222223333443332 2333333 33444566677888899999
Q ss_pred HhhcCCcchhhhhhHHHHHHHHHHHHHH-----HH----H-HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHH
Q 012803 328 MDKSGRRPLLLVSAAGTCLGCLLAALSF-----LF----Q-VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW 397 (456)
Q Consensus 328 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 397 (456)
+||++||+.+..+.++.+++...+.... .. . ++.++......+..+++..|.+|++.|+++.|+.+....
T Consensus 310 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~ 389 (438)
T PRK09952 310 ADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVAS 389 (438)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHH
Confidence 9999999988777665544332221110 00 1 111222222345567888999999999999999776655
Q ss_pred -HHHHHHHHHHHHHHh-h-hhh-hHHHHHHHHHHHHHHHHHhcccC
Q 012803 398 -LGSWIISFTFNFLMK-W-SST-GTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 398 -~g~~i~~~~~g~l~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
+++.++|.+.+++.+ . +.+ ..+...+++.++. .+..+..++
T Consensus 390 ~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~-~v~~~~~~~ 434 (438)
T PRK09952 390 VVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLIS-AMTALLMKD 434 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-HHHHHHccc
Confidence 899999999999988 2 223 3333344433333 333444454
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=285.82 Aligned_cols=374 Identities=16% Similarity=0.070 Sum_probs=273.1
Q ss_pred HHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHH
Q 012803 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 116 (456)
.+.....++++.++...+.++++..+|.+.+|+|.+.++.+|+.+.|.+++.++++++|+++||+|||++++.+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44567777788888888898999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeecc-CCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHH
Q 012803 117 GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRIL 191 (456)
Q Consensus 117 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~ 191 (456)
+++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++....++|..+||.+++.+ +|||.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999998888887777766 678899999999999999999999999877 99999
Q ss_pred HHHhHHHHHHHHH-HhhccCCChhHHHhcCCcHHHHHHH---------HHHhC--CCCCch-HHHHH-------H-HHHH
Q 012803 192 ALIGTIPCLVQLI-GLCFIPESPRWLAKTGKGIESEAAL---------QRLRG--ADADIS-EEAAE-------I-REYT 250 (456)
Q Consensus 192 f~~~~~~~l~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~---------~~~~~--~~~~~~-~~~~~-------~-~~~~ 250 (456)
|++...+.++.++ ..+++||+|+.. +++.+...... ..... .+.... ..... . ....
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~ 241 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR 241 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998877766544 445677765321 11111111100 00000 000000 00000 0 0001
Q ss_pred HHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 251 ETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK 330 (456)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 330 (456)
.+.+..++.-..+++|++.+.......++...........++.|++...+.+....+....+..++..++.++.|++.||
T Consensus 242 ~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r 321 (495)
T PRK14995 242 TQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR 321 (495)
T ss_pred HHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112223333567888877666665555555444444455555555555555556688888899999999999999999
Q ss_pred cCCcchhhhhhHHHHHHHHHHHHH---------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHH
Q 012803 331 SGRRPLLLVSAAGTCLGCLLAALS---------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSW 401 (456)
Q Consensus 331 ~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 401 (456)
+|+|+.+..+..+.+++..++... ....++.++......+.......+..|+++++.+.++.++..++|+.
T Consensus 322 ~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 322 LGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 999998888877777666554432 11112223333333445556677888999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 012803 402 IISFTFNFLMK 412 (456)
Q Consensus 402 i~~~~~g~l~~ 412 (456)
+|+.+.|.+.+
T Consensus 402 ~G~ai~g~i~~ 412 (495)
T PRK14995 402 LGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=324.97 Aligned_cols=406 Identities=35% Similarity=0.636 Sum_probs=313.6
Q ss_pred Hhhhhhhccccceecccccccc--cccCC---------ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 45 VCGSYVFGSAIGYSSPAQSGIT--NDLGL---------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~---------~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.++.+.++++....+...+... .+++. +..+.++..+...+|..+|++++|.++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3445666777666655444333 12211 234578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----
Q 012803 114 CIIGWVIIVFSK---AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (456)
Q Consensus 114 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---- 186 (456)
..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++...
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999998888776543
Q ss_pred c---chHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHH
Q 012803 187 N---WRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (456)
Q Consensus 187 ~---w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (456)
+ ||+.+++..+++++..+..+++||+|+|+..++|.+++++..++.++.+...++..+...+.++ .++.+..+++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE--SQESKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc--ccccceeeee
Confidence 4 9999999999988877777899999999999999999999888855442222221111111111 1111255677
Q ss_pred Hhhhhh-hhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhh
Q 012803 264 LFQRKY-AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS-IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA 341 (456)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 341 (456)
+++++. .++......+..+...........|.+.+.+..+.+.. .......+..+++.+++.++.||+|||+.++.+.
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777654 44555555555555555566677777777777766665 5555666777788888889999999999999888
Q ss_pred HHHHHHHHHHH--HH---HH-----------HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHH
Q 012803 342 AGTCLGCLLAA--LS---FL-----------FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISF 405 (456)
Q Consensus 342 ~~~~~~~~~~~--~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~ 405 (456)
.+++++.+.+. .. .. .......+..+.++..+.+..|.+|++.|+++.|+....++++++++|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred ccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88877776664 11 00 0022233444567888899999999999999999999999999999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhc
Q 012803 406 TFNFLMKWSS-TGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASM 452 (456)
Q Consensus 406 ~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (456)
+...+.+..+ ...+.++++++++..++.++++||+++++.+|+++++
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 9988887444 6777888888888888888999999999999998763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=273.30 Aligned_cols=364 Identities=20% Similarity=0.194 Sum_probs=258.1
Q ss_pred ceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 012803 56 GYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (456)
Q Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (456)
...+...|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++..++++++|++.+++.|+
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV 90 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33456667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccC
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIP 210 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~ 210 (456)
++|++.+...+...+++.|++|+++|++++++.+...++|..+++.+++.+ +||+.|++.+++.++..+.. ++.|
T Consensus 91 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 91 LLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence 999999999999999999999999999999999999999999999988765 99999999888777654444 4566
Q ss_pred CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchh
Q 012803 211 ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNG 290 (456)
Q Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (456)
|+|+... ...++.++...+ ....+ ...++.++.++...++.++++..+......++..........+
T Consensus 171 ~~~~~~~--~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (399)
T TIGR00893 171 DPPQKAK--WLTEEEKYIVVG--GLLAE---------QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW 237 (399)
T ss_pred CCCCccc--cCCHHHHhhcch--hhccc---------cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6553110 001110000000 00000 0001111223345667778887777776666666655444455
Q ss_pred hHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhh-hhHHHHHH-----HHHHHH-------HHHH
Q 012803 291 IAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLV-SAAGTCLG-----CLLAAL-------SFLF 357 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~-----~~~~~~-------~~~~ 357 (456)
.+.|..+..+......+.......++.+++.++.+++.||++||+.... ......++ ...... ....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (399)
T TIGR00893 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALA 317 (399)
T ss_pred HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 5555544433333344577778888899999999999999999862111 11111111 111100 0111
Q ss_pred HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHH
Q 012803 358 QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS--TGTFFAFSAICSLTVLF 432 (456)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~ 432 (456)
....+.+..+..+..+++..|..|++.|+++.|+.+...++|..++|.+.|.+.|..+ ...+...+.+.++..+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 318 LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 1223333444567888899999999999999999999999999999999999999433 44444444444444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=275.27 Aligned_cols=349 Identities=15% Similarity=0.123 Sum_probs=224.6
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
...+.+|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|++
T Consensus 54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 133 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF 133 (476)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh----c---------cccchHHHHHhHHHHHHHH
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----A---------FLNWRILALIGTIPCLVQL 203 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~----~---------~l~w~~~f~~~~~~~l~~~ 203 (456)
+|++.+... ....+++|++|+++|++++++.....++|..+++.+. . ..|||+.|++.+++.++..
T Consensus 134 ~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~ 212 (476)
T PLN00028 134 IGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG 212 (476)
T ss_pred HHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 999987643 4556789999999999999998766666665554332 2 1379999999888877755
Q ss_pred HHhhccC-CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHH
Q 012803 204 IGLCFIP-ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (456)
Q Consensus 204 ~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (456)
+..++++ +.|+ ++.++..+ .. + .++.+....+++.++++..|...+..+....
T Consensus 213 l~~~~~~~~~p~-----~~~~~~~~-------~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (476)
T PLN00028 213 ILVLTLGQDLPD-----GNYRELKK-------SG-T-------------MPKDSFSKVLRYGVTNYRTWILALTYGYSFG 266 (476)
T ss_pred HHHHHHcCcCCC-----CchhhHHh-------cC-c-------------cccccHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 5554444 3332 00000000 00 0 0000011234455666666655555444433
Q ss_pred HHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcc-------hhhhhhHHHHHHHHHHHHH-
Q 012803 283 QQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRP-------LLLVSAAGTCLGCLLAALS- 354 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~- 354 (456)
.......+.+.|+....+......+.......++.++++++.|+++||++||+ .......+.++..+++...
T Consensus 267 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~ 346 (476)
T PLN00028 267 VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN 346 (476)
T ss_pred HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc
Confidence 33333334444443222222222346777788899999999999999998652 1112222222222222111
Q ss_pred -----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Q 012803 355 -----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSL 428 (456)
Q Consensus 355 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~ 428 (456)
....++.+.+.....+..+++..+..| +.+|++.|+.+..+++|+.++|.+.+ ..+ .++...+++.+++.++
T Consensus 347 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i 424 (476)
T PLN00028 347 SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIA 424 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHH
Confidence 111112222222233445566666654 78999999998888888888887765 212 2344556666555555
Q ss_pred HHHHHH
Q 012803 429 TVLFVA 434 (456)
Q Consensus 429 ~~~~~~ 434 (456)
++++.+
T Consensus 425 ~~~~~~ 430 (476)
T PLN00028 425 CTLPVA 430 (476)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=270.75 Aligned_cols=386 Identities=17% Similarity=0.162 Sum_probs=253.9
Q ss_pred HHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHH
Q 012803 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118 (456)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~ 118 (456)
.....++++.+.+.++.....+.+|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34444555556666677777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHH
Q 012803 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALI 194 (456)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~ 194 (456)
++.++++|++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|..+++.+++.+ +||+.|++
T Consensus 100 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 100 LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888765 89999987
Q ss_pred hHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHH---HHHHHhhcChhhH----------
Q 012803 195 GTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE---YTETLERLSEGGI---------- 261 (456)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------- 261 (456)
..+..++.+.....+||++++..++++.++..+..+.....+............ ............+
T Consensus 180 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (496)
T PRK03893 180 GILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCA 259 (496)
T ss_pred HHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 655555444445567777654332222111111111110000000000000000 0000000000000
Q ss_pred ---HHH-h-hhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHH-HcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012803 262 ---LEL-F-QRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI-SAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSG 332 (456)
Q Consensus 262 ---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g 332 (456)
... . .++..+..........+..+........+++.+++ ..+.+ .+.......++.+++.++.|+++||++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g 339 (496)
T PRK03893 260 AIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLG 339 (496)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0 00011111111111111111111123344455543 33443 347778888899999999999999999
Q ss_pred CcchhhhhhHHHHHHHHHHHHH---H-----HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHH
Q 012803 333 RRPLLLVSAAGTCLGCLLAALS---F-----LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 404 (456)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 404 (456)
||+.+..+..+..+..+.+... . ...+..+....+..+...++++|.+|+++|++++|+.+....+|..++|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 340 TRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHH
Confidence 9998877766555544332221 0 0111122233344556667888999999999999999999999999999
Q ss_pred HHHHHHHhhh-hhhHHHHHHH
Q 012803 405 FTFNFLMKWS-STGTFFAFSA 424 (456)
Q Consensus 405 ~~~g~l~~~~-~~~~~~~~~~ 424 (456)
.+.|.+.|.. ....+...+.
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHHhccCChHHHHHHHHH
Confidence 9999999943 3334434333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=261.01 Aligned_cols=325 Identities=14% Similarity=0.118 Sum_probs=233.0
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
...+.+|.+.+++|+++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|++
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 33567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE 211 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~ 211 (456)
+|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+ +||+.|++.+++.++..+.. ..+||
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~ 197 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPS 197 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999998776 99999999887766544433 34566
Q ss_pred ChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhh
Q 012803 212 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI 291 (456)
Q Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (456)
+|++ ++ +...+.++.++++.++......++.....+......
T Consensus 198 ~~~~----~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T PRK10213 198 LPGE----PS----------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYI 239 (394)
T ss_pred CCcc----cc----------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4320 00 000112345667777665554444433332222222
Q ss_pred HHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHH
Q 012803 292 AFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTG 362 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 362 (456)
.+.+.++.+.+. +......+++.+++.++.+++.||.+++.......+..+....+.... ....++.+
T Consensus 240 ---~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 ---RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG 316 (394)
T ss_pred ---HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233333334433 466777888999999999999999644433333222222222222211 11112233
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 423 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 423 (456)
+......+...+++++..| ++++...+......++|..+||.+.|++.|..+....+..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~ 376 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLS 376 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHH
Confidence 3333334555557777777 55778888888888999999999999999954444433333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=266.62 Aligned_cols=363 Identities=16% Similarity=0.087 Sum_probs=258.4
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.++.++..+.+.+..+....+.+...|.+|.+.+++|.+..+.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45566666667777777677777778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cch
Q 012803 114 CIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWR 189 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~ 189 (456)
.+++.+.+.++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999888888889999999999999999998888888888888887665 899
Q ss_pred HHHHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhh
Q 012803 190 ILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRK 268 (456)
Q Consensus 190 ~~f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (456)
+.|++.++..++..+.. ...||+++.. +++ . .. ++...+.+++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----------------~--~~-----------~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRV---GEK----------------L--SL-----------KELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccc---ccc----------------c--cH-----------HHHHHHHHHHHcCc
Confidence 99998888776655433 4567654210 000 0 00 00112234566777
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHH
Q 012803 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC 348 (456)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 348 (456)
.++.......+............+.+....++......+.......++.+++.++.+++.||+++|+.+..+.++.+++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 77665555544443333222333444433222222222344555667788899999999999999998888877776666
Q ss_pred HHHHHHH------H----H-HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012803 349 LLAALSF------L----F-QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTG 417 (456)
Q Consensus 349 ~~~~~~~------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~ 417 (456)
.++.... . . ..+.+.......+........ .+++++|++.++.+....++..+|+.+.+.+.+..+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 374 (406)
T PRK15402 296 LLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG 374 (406)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH
Confidence 6554321 0 0 111222222222333333333 34488999999999999999999999999998855444
Q ss_pred HHHHHHHHHHHH
Q 012803 418 TFFAFSAICSLT 429 (456)
Q Consensus 418 ~~~~~~~~~~~~ 429 (456)
.+....+++.+.
T Consensus 375 ~~~~~~~~~~~~ 386 (406)
T PRK15402 375 LFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=266.01 Aligned_cols=345 Identities=19% Similarity=0.171 Sum_probs=236.4
Q ss_pred ccccceecccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh------
Q 012803 52 GSAIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS------ 124 (456)
Q Consensus 52 ~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------ 124 (456)
..+.++..|.+|. +.+++|.|+.+.|++.+++.+++.+++++.|+++||+||||++..+.++++++.+.++++
T Consensus 28 ~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW 107 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3344555777775 678999999999999999999999999999999999999999999999988877766553
Q ss_pred --chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHH
Q 012803 125 --KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (456)
Q Consensus 125 --~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~ 198 (456)
.+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ |||+.+++..+.
T Consensus 108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~ 187 (399)
T PRK05122 108 PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL 187 (399)
T ss_pred chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 25678999999999999999999999999999999999999999999999999988888765 899988876666
Q ss_pred HHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 199 CLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 199 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
.++........|++++ ++.+ +.+.++.+++ .+.......
T Consensus 188 ~~~~~~~~~~~~~~~~-----~~~~----------------------------------~~~~~~~~~~--~~~~~~~~~ 226 (399)
T PRK05122 188 ALLGLLLARPRPAVPP-----VKGE----------------------------------RLPFRRVLGR--VWPYGMGLA 226 (399)
T ss_pred HHHHHHHHhcCCCCCC-----CCcc----------------------------------chhHHHHHHH--HHHHHHHHH
Confidence 5544433332333211 0000 0001111111 111111111
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-- 355 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 355 (456)
+..+.......+.+.| +.+.+. ..+.......++.+++.++.+++.||+++|+.+..+..+.+++..++....
T Consensus 227 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (399)
T PRK05122 227 LASIGFGTIATFITLY----YAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSP 302 (399)
T ss_pred HHHHHHHHHHHHHHHH----HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH
Confidence 2222222222233333 333332 234556677888899999999999999999988877777776665554431
Q ss_pred ----HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHH
Q 012803 356 ----LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTV 430 (456)
Q Consensus 356 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~ 430 (456)
...++.+++.....+.......|..|+++|+++.|+++....+|..++|.+.|.+.+. ++...+...++++++..
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 382 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGL 382 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 1112233333333455555667888999999999999999999999999999999984 44444555555444444
Q ss_pred HHHHhcccCCCC
Q 012803 431 LFVAKLVPETKG 442 (456)
Q Consensus 431 ~~~~~~~~~~~~ 442 (456)
++ ....+++++
T Consensus 383 ~~-~~~~~~~~~ 393 (399)
T PRK05122 383 AL-TWLLYRRAP 393 (399)
T ss_pred HH-HHHhccccc
Confidence 33 333444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=268.56 Aligned_cols=365 Identities=14% Similarity=0.054 Sum_probs=264.3
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH-----hchhhHHH
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLD 131 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ 131 (456)
...+.+|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.++
T Consensus 35 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (417)
T PRK10489 35 LLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIY 114 (417)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3456777788899999999999999999999999999999999999999999998888877665543 56789999
Q ss_pred HHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhh
Q 012803 132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~ 207 (456)
+.|+++|++.+...++..+++.|++|+++|+++.++.....++|..+||.+++.+ +|++.|++.++..++..+..+
T Consensus 115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 115 LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888899999999999999999999999999999999998776 899999988877777666666
Q ss_pred ccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhcc
Q 012803 208 FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 287 (456)
Q Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
.+|++++.. ++++ + ..+ +....++..++++.++...+...+... ....
T Consensus 195 ~l~~~~~~~---~~~~--------------~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (417)
T PRK10489 195 RLPALPPPP---QPRE--------------H---PLR-----------SLLAGFRFLLASPVVGGIALLGGLLTM-ASAV 242 (417)
T ss_pred hCCCCCCCC---cccc--------------c---chH-----------HHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence 777654210 0000 0 000 001123345556665544443333222 1222
Q ss_pred chhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------HHHHH
Q 012803 288 VNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------FQVYT 361 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 361 (456)
..+.+.|.....+......+.......++.+++.++.+++.||.++++.+..+..+.+++.+++..... ..++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 334444444433333333456777788899999999999999977777777777766666655543211 11122
Q ss_pred HHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 362 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
+.......+...+++.|..|++.||++.|+++...++|..++|.+.|++.+. +....++..+++.++.+++.+...++.
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 2222222345567888999999999999999999999999999999999994 555666667777677777777777888
Q ss_pred CCCCHHHHHhhcC
Q 012803 441 KGRTLEEIQASMN 453 (456)
Q Consensus 441 ~~~~~~~~~~~~~ 453 (456)
|+++++|.|++..
T Consensus 403 ~~~~~~~~~~~~~ 415 (417)
T PRK10489 403 RRFRQTPPEVDAS 415 (417)
T ss_pred cccccccccCCCC
Confidence 8887777765543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=265.06 Aligned_cols=340 Identities=20% Similarity=0.205 Sum_probs=224.4
Q ss_pred HHHHHHhhhhhhccccceecccccccccccCCChhhHHHH-HHHH-----HHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 40 STFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF-GSIL-----TIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~s~~-----~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.....+++.+.+.++...+++..|.+.+|++.++.+.+.. .+.. .++..+++++.|+++||+|||++++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 4566667788888888888999999999999988776543 3322 233357899999999999999999999999
Q ss_pred HHHHHHHHHHhchhh--------HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 012803 114 CIIGWVIIVFSKAAW--------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (456)
Q Consensus 114 ~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 185 (456)
+++++++++++++++ .++++|+++|++.+...+...++++|++|+++|++++++...+.++|..+++.++..
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 468999999999999988888999999999999999999888877777666655443
Q ss_pred ------------ccchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 012803 186 ------------LNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETL 253 (456)
Q Consensus 186 ------------l~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
.|||++|++..+...+........||++++..+++
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--------------------------------- 222 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--------------------------------- 222 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh---------------------------------
Confidence 38999998755443222222222333321110000
Q ss_pred hhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHH-cCCCc---hHHHHHHHHHHHHHHHHHHHHHh
Q 012803 254 ERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMD 329 (456)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d 329 (456)
+.+.+..+++..+++..+.... ...+........+..|.+.++++ .+.+. ........++.+++.++.|+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 223 RPSMREIFRSLAANWRIVLAGM---LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred ccccccHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111112222222221111 11111122233455556655544 34433 35566777888999999999999
Q ss_pred hcCCcchhhhhhHHHHHHHH-HHHHH-----H--H-H-HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHH-H
Q 012803 330 KSGRRPLLLVSAAGTCLGCL-LAALS-----F--L-F-QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW-L 398 (456)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~-~~~~~-----~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~ 398 (456)
|++||+....+..+.++... .+... . . . ..+.+.+.....+..+.+..|.+|++.|+++.|+.+.+.. +
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAI 379 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHH
Confidence 99999987765444332211 11110 0 0 1 1122222223344555778999999999999999766665 4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 012803 399 GSWIISFTFNFLMKWSS 415 (456)
Q Consensus 399 g~~i~~~~~g~l~~~~~ 415 (456)
++.++|.+.|++.|..+
T Consensus 380 ~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 380 FGGFTPAISTWLIHVTG 396 (434)
T ss_pred HhhhHHHHHHHHHHhcC
Confidence 68899999999998433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=267.81 Aligned_cols=331 Identities=13% Similarity=0.053 Sum_probs=241.8
Q ss_pred ecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
.++..|.+.+++|++.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA 101 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCCC
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPES 212 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~~ 212 (456)
|++.+...+.....+.+++| ++|+++.++...+.++|..+++++...+ +||+.|++.+++.++..+.. ++++++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999888888888889987 5699999999999999987755554333 89999999888877755444 445554
Q ss_pred hhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhH
Q 012803 213 PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIA 292 (456)
Q Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (456)
|+.. .+++. +. ++++...++.++++..+......++....... ..
T Consensus 181 ~~~~-~~~~~---------------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 225 (377)
T TIGR00890 181 PGQL-IKTNI---------------EV---------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLL----LI 225 (377)
T ss_pred chhc-cccCc---------------cc---------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHH----HH
Confidence 3210 00000 00 00011234456666666555444443332221 22
Q ss_pred HhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH---H-----HHHHH
Q 012803 293 FYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF---L-----FQVYT 361 (456)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~ 361 (456)
.+.+.+.++.+.+. +.......++.++++++.+++.||++||+.+..+..+.+++.+.+.... . .....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 22233333334333 3667778888999999999999999999998888777777766554321 0 11222
Q ss_pred HHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHH
Q 012803 362 GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTG-TFFAFSA 424 (456)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~-~~~~~~~ 424 (456)
+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..++. .+...++
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~ 369 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGA 369 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Confidence 33333334555677889999999999999999999999999999999999844433 3444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=265.23 Aligned_cols=352 Identities=13% Similarity=0.094 Sum_probs=247.1
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 123 (456)
.+++.+..+......++.+|++.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++++
T Consensus 12 ~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~ 91 (394)
T PRK03699 12 SFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF 91 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHH
Q 012803 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIP 198 (456)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~ 198 (456)
+++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+...++|..++|.+.+.+ +||+.|++.+++
T Consensus 92 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~ 171 (394)
T PRK03699 92 SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLV 171 (394)
T ss_pred cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999999988888899999999999999999998888888888888776543 899999988877
Q ss_pred HHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 199 CLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 199 ~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
.++..+..++ .+.|+. ++++.+ + + ++..+ +. .++..+...+..+
T Consensus 172 ~~~~~~~~~~-~~~p~~--~~~~~~------------~-~---------------~~~~~----~~-~~~~~~~~~~~~~ 215 (394)
T PRK03699 172 YVAIFILTLF-SEFPAL--GKHAPK------------A-D---------------KPVAK----EK-WGIGVLFLAIAAL 215 (394)
T ss_pred HHHHHHHHHh-cCCccc--cccCcc------------c-c---------------Ccccc----cc-CChHHHHHHHHHH
Confidence 6665444333 222210 000000 0 0 00000 00 1233333333334
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH----
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS---- 354 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---- 354 (456)
+....+.....+.|.|..+.++.+....+.......++.++++++.++++||+++|+.+.....+.++...++...
T Consensus 216 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (394)
T PRK03699 216 LYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPS 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 4333333333444444433333222334566777788899999999999999999998877666655544444321
Q ss_pred --HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHH
Q 012803 355 --FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVL 431 (456)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~ 431 (456)
....+..+++..+..+...++..|..| +.+++..|......++|..++|.+.|++.| .+....++..++++.++.+
T Consensus 296 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 296 HLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 111223333334445555566667665 456778899999999999999999999998 4555555555555544444
Q ss_pred H
Q 012803 432 F 432 (456)
Q Consensus 432 ~ 432 (456)
.
T Consensus 375 ~ 375 (394)
T PRK03699 375 M 375 (394)
T ss_pred H
Confidence 3
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=261.87 Aligned_cols=351 Identities=15% Similarity=0.148 Sum_probs=239.7
Q ss_pred HhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 012803 45 VCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124 (456)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 124 (456)
.+..+..+.......+.+|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~ 88 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS 88 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555566888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHH
Q 012803 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (456)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l 200 (456)
+|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|++++.+ +||+.|++.++..+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~ 168 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNI 168 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHH
Confidence 99999999999999999988888888899999999999999999999999999998887665 89999999888766
Q ss_pred HHHH-HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHH
Q 012803 201 VQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (456)
Q Consensus 201 ~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (456)
+..+ ...++||.++ +.+. +. + ...+.++++..+.......+
T Consensus 169 ~~~~~~~~~lp~~~~----~~~~---------------~~-------~------------~~~~~~~~~~~~~~~~~~~~ 210 (382)
T PRK10091 169 AVLASIYFWVPDIRD----EAKG---------------GL-------R------------EQFHFLRSPAPWLIFAATMF 210 (382)
T ss_pred HHHHHHHHhCCCCCc----cccc---------------CH-------H------------HHHHHhcChHHHHHHHHHHH
Confidence 5443 3455777532 0000 00 0 00122344444443333322
Q ss_pred HHHHHhccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-H
Q 012803 280 MVLQQFGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-F 355 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-~ 355 (456)
.....+......+.|. .+..+.+ .+.......++.++++++.+++.||+++|+.+..+..+.+++.+++... .
T Consensus 211 ~~~~~~~~~~~~~~~~---~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (382)
T PRK10091 211 GNAGVFAWFSYIKPYM---MFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG 287 (382)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 2222111112222222 2223443 3467778888999999999999999999998888877777666544321 1
Q ss_pred --HHH----HHHHHhcccccccce-eeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhh-hHHHHHHHHH
Q 012803 356 --LFQ----VYTGSFSLGMGGIPW-VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SST-GTFFAFSAIC 426 (456)
Q Consensus 356 --~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~-~~~~~~~~~~ 426 (456)
... ...+....+..+... ....+..|++.++.+ ..+...++|.++||.+.|.+.|. .++ ..+...++++
T Consensus 288 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~ 365 (382)
T PRK10091 288 MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLS 365 (382)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHH
Confidence 111 111111112222212 233444444555544 34677889999999999999993 334 3444444444
Q ss_pred HHHHHHHHhccc
Q 012803 427 SLTVLFVAKLVP 438 (456)
Q Consensus 427 ~~~~~~~~~~~~ 438 (456)
.+.........+
T Consensus 366 ~~~~~~~~~~~~ 377 (382)
T PRK10091 366 FAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHHHHhh
Confidence 443333333333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=267.47 Aligned_cols=380 Identities=13% Similarity=0.059 Sum_probs=255.9
Q ss_pred chhHHHHHHHHHHHhhhhhhccccceeccccccccc----------------------ccCCChhhHHHHHHHHHHHHHH
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITN----------------------DLGLSVAEYSLFGSILTIGAMI 89 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~~~s~~~~~~~~ 89 (456)
+.++.....+++....++.++.+.+...+ .+.+ |++++..+.|++.+.+.+++.+
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMV---AMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEE---EcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 34455555556666666778777765544 3444 7899999999999999999999
Q ss_pred HHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh--chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHH
Q 012803 90 GAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV 167 (456)
Q Consensus 90 ~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (456)
++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887554 5688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchH
Q 012803 168 HQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISE 241 (456)
Q Consensus 168 ~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
...+..+|.++++++++.+ +||+.|++.+++.++..+.+ .+.+|+|+... ...++.++..++..
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~~-------- 241 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSSL-------- 241 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhhc--------
Confidence 9999999999998887654 89999999988877765555 44566664211 01111000000000
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 012803 242 EAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMT 321 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (456)
..+..+.+.+.+++++++++..+...+..+...........++|.|+.+.++......+.......++.+++.
T Consensus 242 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~ 314 (465)
T TIGR00894 242 -------QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCS 314 (465)
T ss_pred -------ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHH
Confidence 0000011123457788888888877776666666544444555555544444444445577777888999999
Q ss_pred HHHHHHHhhcCCcchh--------hhhhHHHHHHHHHHHHH--------HHHHHHH-HHhcccccccceeeecccCCccc
Q 012803 322 LLGVLLMDKSGRRPLL--------LVSAAGTCLGCLLAALS--------FLFQVYT-GSFSLGMGGIPWVIMSEVFPINM 384 (456)
Q Consensus 322 ~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 384 (456)
++.|+++||+++|+.. ..+......+...+... ....+.. +.+..+..+.......|..| +.
T Consensus 315 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 393 (465)
T TIGR00894 315 IFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RF 393 (465)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hH
Confidence 9999999998654321 11111111111111111 0011111 11222223334445556766 58
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHHHHH
Q 012803 385 KGSAGSLVTLVSWLGSWIISFTFNFLMKW---S-STGTFFAFSAICSLTVLF 432 (456)
Q Consensus 385 ~~~~~g~~~~~~~~g~~i~~~~~g~l~~~---~-~~~~~~~~~~~~~~~~~~ 432 (456)
+|.+.|+.+..+.+++.++|.+.|.+.+. + +...+.+.++..++..++
T Consensus 394 ~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 445 (465)
T TIGR00894 394 LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF 445 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998763 2 233444444444444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=264.69 Aligned_cols=399 Identities=21% Similarity=0.221 Sum_probs=291.3
Q ss_pred HHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH
Q 012803 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 122 (456)
..+...+....+....++..+ .+.++.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+..+
T Consensus 89 ~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a 166 (521)
T KOG0255|consen 89 VICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA 166 (521)
T ss_pred ccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333334322 356677888999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHhHHHHH
Q 012803 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCL 200 (456)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--~w~~~f~~~~~~~l 200 (456)
+++|++.+++.|+++|++.+........++.|++++++|+.+..+ ......+..+++++++++ +||+.+++..++.+
T Consensus 167 ~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~ 245 (521)
T KOG0255|consen 167 FAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSG 245 (521)
T ss_pred HhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 555666666666666555 89999999999998
Q ss_pred HHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCC---CchHHHHHH--HHHHHHHhhcChhhHHHHhhhhhhhHHHH
Q 012803 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADA---DISEEAAEI--REYTETLERLSEGGILELFQRKYAHSLIV 275 (456)
Q Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (456)
+.++.+++.||+|+|+..+++.+++.+..++..+.|. ...+..... .+..+.....++..+.++++.++.+...+
T Consensus 246 ~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 325 (521)
T KOG0255|consen 246 LFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTL 325 (521)
T ss_pred HHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHH
Confidence 8877777778999999999999999999888866542 221111111 11111112223356888888876555555
Q ss_pred HHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH
Q 012803 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 355 (456)
...+.++.....++.+.... ...+.+........+.....+....+...|+.|||.....+..+..++++...+..
T Consensus 326 ~~~~~~~~~~~~y~gl~~~~----~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~ 401 (521)
T KOG0255|consen 326 YLLFIWFVFSLVYYGLSLNV----SGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLP 401 (521)
T ss_pred HHHHHHHHHhHHHHhhhhhh----hhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554433222222222222 23344455666666668888888889999999999999999999888888877652
Q ss_pred H------HH---HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012803 356 L------FQ---VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426 (456)
Q Consensus 356 ~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 426 (456)
. .. .+..++........+.+..|++|+..|..+.+..+....+|.+++|.+.-..........+..++...
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~ 481 (521)
T KOG0255|consen 402 DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLA 481 (521)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 1 11 12222222224455888999999999999999999999999999999886555533333333346666
Q ss_pred HHHHHHHHhcccCCCCCCHHHH
Q 012803 427 SLTVLFVAKLVPETKGRTLEEI 448 (456)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~ 448 (456)
.+.+.+...++||++++...+.
T Consensus 482 ~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 482 LLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HHHHHHHHhcCcccCCCCCchh
Confidence 6666677688999988765443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=268.36 Aligned_cols=365 Identities=18% Similarity=0.130 Sum_probs=259.5
Q ss_pred hhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc
Q 012803 46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK 125 (456)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 125 (456)
++.+....+.+..++.+|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 96 (471)
T PRK10504 17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG 96 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555666667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHH
Q 012803 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV 201 (456)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~ 201 (456)
+++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +||+.|++.....++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l 176 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGII 176 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988766 999999998877666
Q ss_pred HHHHh-hccCCChhHHHhcCCcHHHHHHH-------HH--HhCCCC-C-chHHHHH---------HHHHHHHHhhcChhh
Q 012803 202 QLIGL-CFIPESPRWLAKTGKGIESEAAL-------QR--LRGADA-D-ISEEAAE---------IREYTETLERLSEGG 260 (456)
Q Consensus 202 ~~~~~-~~~~~~p~~~~~~~~~~~~~~~~-------~~--~~~~~~-~-~~~~~~~---------~~~~~~~~~~~~~~~ 260 (456)
..+.. ...|+.+. ++.+.+...... .. ..+.+. . ....... .....++.+..++..
T Consensus 177 ~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (471)
T PRK10504 177 GAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF 253 (471)
T ss_pred HHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 54444 44454432 111222111100 00 011100 0 0000000 000001111112222
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhh
Q 012803 261 ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVS 340 (456)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 340 (456)
..++++++.++......++............++|.+...+......++......++.+++.++.+++.||+++|+.+..+
T Consensus 254 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~ 333 (471)
T PRK10504 254 SLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVAT 333 (471)
T ss_pred CHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 23578888887776666666555444444556665554433333445677777788888889999999999999998888
Q ss_pred hHHHHHHHHHHHHH---H-----H-HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 012803 341 AAGTCLGCLLAALS---F-----L-FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 411 (456)
Q Consensus 341 ~~~~~~~~~~~~~~---~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 411 (456)
..+.+++..++... . . ..+..+.......+.......+..|++.++.+.|+.++...+|..+|+.+.|.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 334 TLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665554432 1 0 0111222222234555677778899999999999999999999999999999998
Q ss_pred hh
Q 012803 412 KW 413 (456)
Q Consensus 412 ~~ 413 (456)
+.
T Consensus 414 ~~ 415 (471)
T PRK10504 414 GL 415 (471)
T ss_pred HH
Confidence 83
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=256.44 Aligned_cols=342 Identities=15% Similarity=0.102 Sum_probs=242.5
Q ss_pred HHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH
Q 012803 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 122 (456)
.+.++.+..+.+.+..++.+|.+.+++|.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHH
Q 012803 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPC 199 (456)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~ 199 (456)
+++|++.+++.|+++|++.+...+...+.+.+..++++|+++++.+..+.++|..+||.+++.+ .++...+..+...
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 9999999999999999999988888877778888999999999999999999999999999877 1222333333222
Q ss_pred HHHHHHhh-ccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 200 LVQLIGLC-FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 200 l~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
...+...+ ..+++++ + +++..+.++.++++.++.......
T Consensus 170 ~~~~~~~~~~~~~~~~------~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 170 AAILPLLFTRILNQQA------E---------------------------------NHDSTSIWPMLKLRQARLGVNGCI 210 (381)
T ss_pred HHHHHHHHhcccCCCC------C---------------------------------CCCCCCHHHHHHhcchHHHHHHHH
Confidence 22111111 1222100 0 000112334556665554333233
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS- 354 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~- 354 (456)
.........+.. .+.+.++.+.+. +.......++.+++++..+++.||+++|+.+..+....+++.+.+...
T Consensus 211 ~~~~~~~~~~~~----lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~ 286 (381)
T PRK03633 211 ISGIVLGSLYGL----MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQA 286 (381)
T ss_pred HHHHHHHHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhH
Confidence 322222222333 344444445443 356667778889999999999999999998877777666655443211
Q ss_pred --HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Q 012803 355 --FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST-GTFFAFSAICS 427 (456)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~-~~~~~~~~~~~ 427 (456)
.....+.+.......|...+.+.|..|+++++...+..+...++|..++|.+.|++.|..+. ..+...+.+.+
T Consensus 287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l 362 (381)
T PRK03633 287 AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSF 362 (381)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 11112333333344677777788888888888888888888999999999999999995443 44444444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=255.49 Aligned_cols=336 Identities=16% Similarity=0.144 Sum_probs=229.4
Q ss_pred ccceecccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH--------h
Q 012803 54 AIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--------S 124 (456)
Q Consensus 54 ~~~~~~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~--------~ 124 (456)
..++..|.+|. +.+|+|.|.++.|++.+.+.+++.++++++|+++||+||||+++.+.+...++.+.... .
T Consensus 30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAP 109 (392)
T ss_pred HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 34555777775 67899999999999999999999999999999999999999999998887776543322 3
Q ss_pred chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHH
Q 012803 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (456)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l 200 (456)
++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|++++.+ |||+.+.+..+..+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 58899999999999999988888888999999999999999999999999999999988765 89987766555443
Q ss_pred HHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHH
Q 012803 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLM 280 (456)
Q Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (456)
+........||.++. +++ +.+.++.++. .+.......+.
T Consensus 190 ~~~~~~~~~~~~~~~---~~~------------------------------------~~~~~~~~~~--~~~~~~~~~l~ 228 (392)
T PRK12382 190 LAWAFNGTVRKVPAH---AGE------------------------------------RPSLWSVVGL--IWKPGLGLALQ 228 (392)
T ss_pred HHHHHHHhccCCCCC---ccc------------------------------------CchHHHHHHH--HHHhHHHHHHH
Confidence 333222223332110 000 0000111111 11111111111
Q ss_pred HHHHhccchhhHHhHHHHHHHcCCC-chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH----
Q 012803 281 VLQQFGGVNGIAFYASSIFISAGFS-GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF---- 355 (456)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---- 355 (456)
..... ....+.+.++.+.+.+ .+.......++.++++++.|++.||+++|+.+..+..+.+++..++....
T Consensus 229 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (392)
T PRK12382 229 GVGFA----VIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWV 304 (392)
T ss_pred HHHHh----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHH
Confidence 11111 1223333333333433 33555566777888999999999999999998888777777666554421
Q ss_pred --HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHH
Q 012803 356 --LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLF 432 (456)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~ 432 (456)
....+.+.......+...+...|..|+++||++.|+.+....+|..++|.+.|.+.|. ++...+...+.+.++..++
T Consensus 305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 1112222222223455556778889999999999999999999999999999999994 4444455555544444444
Q ss_pred HH
Q 012803 433 VA 434 (456)
Q Consensus 433 ~~ 434 (456)
.+
T Consensus 385 ~~ 386 (392)
T PRK12382 385 TI 386 (392)
T ss_pred HH
Confidence 33
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=253.36 Aligned_cols=417 Identities=21% Similarity=0.257 Sum_probs=303.2
Q ss_pred CCchhHHHHHHHHHHHhhhhhhccccceeccccccccccc--------CCChhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 012803 30 SASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDL--------GLSVAEYSLFGSILTIGAMIGAIMSGKIADYI 101 (456)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 101 (456)
.....|+.+..+.+..++.+.++++...++.+.|-+...+ +.++...+.+..+..+|..++|+++|++.||+
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~ 111 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF 111 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455789999999999999999999999888877665443 24566788999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhc-------hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH
Q 012803 102 GRRGTMGFSDIVCIIGWVIIVFSK-------AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI 174 (456)
Q Consensus 102 G~r~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 174 (456)
|||+++...++++.+++++++++. -.+++.+.|+++|+|.|+-+|...++.+|...+++||...+...+..+.
T Consensus 112 GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 112 GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 999999999999999999888753 2567899999999999999999999999999999999988887777777
Q ss_pred HHHHHHHHhccc-------------------cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCc-HHHHHHHHHHhC
Q 012803 175 GVSMTYLIGAFL-------------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKG-IESEAALQRLRG 234 (456)
Q Consensus 175 G~~~~~~l~~~l-------------------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~ 234 (456)
|...|.+++-.+ -||..+.+.+++.+......+.+||++++..-..++ +.+.+..++...
T Consensus 192 GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~ 271 (538)
T KOG0252|consen 192 GILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLS 271 (538)
T ss_pred hHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccc
Confidence 776666555333 399999999999998888889999999886332222 222211111110
Q ss_pred CCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch-------
Q 012803 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS------- 307 (456)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (456)
. +.+++... +...+.+++....+...+..+ .-..++.....++..-...+....+...+++..+...+
T Consensus 272 ~--~~~~~~~~--~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~ 346 (538)
T KOG0252|consen 272 V--DIEAESTA--ESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL 346 (538)
T ss_pred c--ccchhhcc--ccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence 0 00000000 000000111112233444334 33556666677776666677777788888876554332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHhccccccc
Q 012803 308 -----IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL-----------FQVYTGSFSLGMGGI 371 (456)
Q Consensus 308 -----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 371 (456)
.-..+.....++|..+...++|++|||+..+.++.++.+..+.++..+. ..+...+...|....
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~t 426 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNAT 426 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCce
Confidence 1223333444557777778999999999999999999998888776532 224445556677788
Q ss_pred ceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-----h-hhhhHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 012803 372 PWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-----W-SSTGTFFAFSAICSLTVLFVAKLVPETKGRTL 445 (456)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
...+.+|.+|++.|+++.|+....+-.|++++...+.++.+ . +....++++++++.+ ..+..++++|+++++.
T Consensus 427 tfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 427 TFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETKGKSL 505 (538)
T ss_pred eEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeecccccCH
Confidence 88999999999999999999999999999999999999988 2 233445555555444 4555667789999998
Q ss_pred HHHHhhc
Q 012803 446 EEIQASM 452 (456)
Q Consensus 446 ~~~~~~~ 452 (456)
+|++++.
T Consensus 506 eei~~e~ 512 (538)
T KOG0252|consen 506 EEISNEE 512 (538)
T ss_pred HHhcChh
Confidence 8876543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=263.89 Aligned_cols=361 Identities=20% Similarity=0.244 Sum_probs=247.4
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 123 (456)
..+..+..+.+.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 101 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL 101 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556677888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHH
Q 012803 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (456)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~ 199 (456)
+++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.|++.++..
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999888665 8999999886555
Q ss_pred HH-HHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 200 LV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 200 l~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
++ ..+...++||++++..++ +.++..+..++.........++ ..++ .+..++..+...+.+++++..+.......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T TIGR00895 182 LLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTARITVLLWL 257 (398)
T ss_pred HHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhHHHHHHHHH
Confidence 44 445556788887665444 2222222222221111100000 0000 00000011111222332222222211111
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH-H
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL-S 354 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~ 354 (456)
..+...........+.+.+.+..+.+. +.......++.+++.++.+++.||+++|+... ...+.++...++.. .
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 335 (398)
T TIGR00895 258 -LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL 335 (398)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh
Confidence 111111223334444554444444443 36677778899999999999999999984433 33333332222222 1
Q ss_pred ------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 355 ------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 355 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
....++.+.+..+..+...++..|.+|++.|+++.|+.+....+|..++|.+.|++
T Consensus 336 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11223344444445677788999999999999999999999999999999999875
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=251.36 Aligned_cols=361 Identities=15% Similarity=0.104 Sum_probs=250.6
Q ss_pred hHHHHHHHHHHHhhhhhhccccceeccccccccc-ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITN-DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDI 112 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~ 112 (456)
.++......+.....|.. ....+|+.+.+.+ |+|+|++|.+++.+++.+++.+++++.|++.||+|+|+++.++.+
T Consensus 32 a~r~l~~s~~~f~~~F~~---w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~l 108 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCV---WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344443344334444443 3344666777766 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHH----HHHh
Q 012803 113 VCIIGWVIIVFS-----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----YLIG 183 (456)
Q Consensus 113 ~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~l~ 183 (456)
++++.++..+++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++ |.+.
T Consensus 109 l~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999987 8999999999999998 66888999999999999999999999976666666544 4322
Q ss_pred c------------------cccchHHHHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHH
Q 012803 184 A------------------FLNWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAA 244 (456)
Q Consensus 184 ~------------------~l~w~~~f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (456)
. ..+||..+++..++.++..+.. ++.++.|+
T Consensus 188 ~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------ 237 (462)
T PRK15034 188 FVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------ 237 (462)
T ss_pred HHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------------------------------
Confidence 1 1147888878777776655444 44444321
Q ss_pred HHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Q 012803 245 EIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLG 324 (456)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (456)
++.+.....+.+|+++.|...+..++.+..+.+...++|+|....+. ............+...+.++++
T Consensus 238 ---------~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplg 306 (462)
T PRK15034 238 ---------SRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVG 306 (462)
T ss_pred ---------cccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhh
Confidence 01122334567888988888887777766655555566666544331 1111222344567788888999
Q ss_pred HHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccc-cccceeeecccCCc----------
Q 012803 325 VLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-----------LFQVYTGSFSLGM-GGIPWVIMSEVFPI---------- 382 (456)
Q Consensus 325 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------- 382 (456)
|+++||+|+++++..+.+.+.++...+.... ...++..+...|. ....+-++.+.+|+
T Consensus 307 G~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~ 386 (462)
T PRK15034 307 GAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKG 386 (462)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccc
Confidence 9999999999998888776666553322111 1111111122232 23444455555553
Q ss_pred -----------cchhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 383 -----------NMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 383 -----------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
++.|.+.|+....+.+|+.+-|.+.|...+ .++...++.+.+..+++.++.+....+
T Consensus 387 ~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 387 GSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred cchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 257889999999999999999999999888 234445666666667777776665433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=263.51 Aligned_cols=368 Identities=16% Similarity=0.138 Sum_probs=241.3
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh----chhhHHHHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS----KAAWWLDLGR 134 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r 134 (456)
....|.+++ +|+++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLL 125 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 344565665 59999999999999999999999999999999999999999999999998887764 4677888999
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc-----ccchHHHHHhHHHHHHH-HHHhhc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-----LNWRILALIGTIPCLVQ-LIGLCF 208 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~-----l~w~~~f~~~~~~~l~~-~~~~~~ 208 (456)
++.|++.+...+.....+.|++|+++|++++++.+.+.++|..+++.+... .+||+.|++.+++.++. ++.+++
T Consensus 126 ~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 126 FLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888888899999999999999999999999999888766543 28999999988887764 445566
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
+||+|+....+. .+.. ++...+...+ + .+.+.+.++...+.+++++.++...+...+.....+...
T Consensus 206 ~~~~~~~~~~~~--~~~~------~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T TIGR00712 206 MRDTPQSCGLPP--IEEY------RNDYPDDYNE--K----AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVL 271 (438)
T ss_pred ccCCHHhcCCCC--chhc------cccccccccc--c----cccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 788765321000 0000 0000000000 0 000000001111235677777776665555554444444
Q ss_pred hhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHH---HHHHHHHH-----H---HH
Q 012803 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCL---GCLLAALS-----F---LF 357 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~---~~~~~~~~-----~---~~ 357 (456)
.+.|.|+....+......++...+..+.++++.++.|+++||+++++....+.....+ +...+... . ..
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC 351 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 4445555443222333345677778889999999999999999654332223222211 11111110 0 00
Q ss_pred HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHH-HHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHh
Q 012803 358 QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS-WIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
.+..+....+..........|.+|++.|+++.|+.+...++|+ +++|.+.|.+.|. ++...+.+..++.+++.+....
T Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 1111111112112222456789999999999999999988875 6899999999994 4445555666666666666666
Q ss_pred cccCCC
Q 012803 436 LVPETK 441 (456)
Q Consensus 436 ~~~~~~ 441 (456)
+.+|.|
T Consensus 432 ~~~~~~ 437 (438)
T TIGR00712 432 VMIGEK 437 (438)
T ss_pred HHhhcc
Confidence 666544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=265.82 Aligned_cols=379 Identities=17% Similarity=0.116 Sum_probs=247.4
Q ss_pred chhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHH
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 111 (456)
...|..+..+++.....+.+. ...+..+|.+.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFP---KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhh---cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 444555555444433333332 23356778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhhHHHH-HHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----
Q 012803 112 IVCIIGWVIIVFSKAAWWLDL-GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---- 186 (456)
++.++++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999998865 5799999998776777788889996 7899999999999999999998888765
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhh
Q 012803 187 NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266 (456)
Q Consensus 187 ~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (456)
|||+.|++.+++.++..+..+++.+.+.... +.+.++ . ......+ +.++. . .. ...++..+....++++
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~-~~~~~-~--~~--~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKS-K---EGLPPDG-STKKL-S--KK--STAEKINRFLDFSLFT 239 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-cccccc-c---ccCCCCC-ccccc-c--cc--chhhhhhhhcchHHhc
Confidence 9999999998887765544444332221000 000000 0 0000000 00000 0 00 0000001111124667
Q ss_pred hhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhc--CCcchhhhh-
Q 012803 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLLLVS- 340 (456)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~- 340 (456)
++.++......++..........+++.|. ++.+.+ .+......+++.++++++.+++.||. ++|+.....
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~----~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 315 (455)
T TIGR00892 240 HRGFLVYLSGNVIMFLGFFAPIIFLVPYA----KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF 315 (455)
T ss_pred CchHHHHHHHHHHHHHHccchHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence 77777666655555554443334444444 333443 34667777888889999999999974 333333222
Q ss_pred -hHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 341 -AAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 341 -~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
.+..+++.++.... ....++.++......+...+.+.|.+|+++++++.|+++...++|.+++|.+.|.+.|.
T Consensus 316 ~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 316 ALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 22222322222221 11123333333344566678888999999999999999999999999999999999884
Q ss_pred -h-hhhHHHHHHHHHHHH
Q 012803 414 -S-STGTFFAFSAICSLT 429 (456)
Q Consensus 414 -~-~~~~~~~~~~~~~~~ 429 (456)
+ +...+++.+++.++.
T Consensus 396 ~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 396 TKNYKYIFYASGSIVVSA 413 (455)
T ss_pred cCCcchHHHHhhHHHHHH
Confidence 3 334455544444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.28 Aligned_cols=371 Identities=16% Similarity=0.144 Sum_probs=270.5
Q ss_pred HHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHH
Q 012803 41 TFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI 120 (456)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~ 120 (456)
...++++.+...++.+..++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34445566666777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhH
Q 012803 121 IVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGT 196 (456)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~ 196 (456)
+++++|++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988776 9999999988
Q ss_pred HHHHHHHHHh-hccCCChhHHHhcCCcHHHHHH--------HH-H-HhCCCCC--chHHHHHH---------HHHHHHHh
Q 012803 197 IPCLVQLIGL-CFIPESPRWLAKTGKGIESEAA--------LQ-R-LRGADAD--ISEEAAEI---------REYTETLE 254 (456)
Q Consensus 197 ~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~--------~~-~-~~~~~~~--~~~~~~~~---------~~~~~~~~ 254 (456)
++.++..+.. +++||+++. ++++.+..... .. . ..+...+ .+...... .....+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred HHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 7776654443 556664331 11111111100 00 0 0111111 11000000 00001111
Q ss_pred hcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 012803 255 RLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR 334 (456)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 334 (456)
++++....++++++.++...+..++..+..+......|.|.....+......+....+..++.+++.++.|++.||++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~ 321 (485)
T TIGR00711 242 DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR 321 (485)
T ss_pred CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH
Confidence 22222334677888877777666666666555555566666554444444455777888889999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHH----------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHH
Q 012803 335 PLLLVSAAGTCLGCLLAALS----------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 404 (456)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 404 (456)
+.+..+..+.+++...+... .....+.++......+.......+..|+++++++.|+.+....+|+.+|+
T Consensus 322 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~ 401 (485)
T TIGR00711 322 KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT 401 (485)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99888888777777665521 11112223322222334445566778999999999999999999999999
Q ss_pred HHHHHHHhh
Q 012803 405 FTFNFLMKW 413 (456)
Q Consensus 405 ~~~g~l~~~ 413 (456)
.+.+.+.+.
T Consensus 402 ~i~g~~~~~ 410 (485)
T TIGR00711 402 ALITTILTN 410 (485)
T ss_pred HHHHHHHHH
Confidence 999999873
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=258.50 Aligned_cols=336 Identities=13% Similarity=0.034 Sum_probs=253.5
Q ss_pred hhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc---
Q 012803 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--- 125 (456)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--- 125 (456)
+......+...+.+|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG 88 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344445556777888899999999999999999999999999999999999999999999999999998888887
Q ss_pred --hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHH
Q 012803 126 --AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (456)
Q Consensus 126 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~ 199 (456)
+++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+ +||+.|++.++..
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 168 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGF 168 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776 8999999887776
Q ss_pred HHHHHHhhcc--CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 200 LVQLIGLCFI--PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 200 l~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
++..+..+.+ ||+++ +++++ .++ +. .++.....+.+++++.++......
T Consensus 169 ~~~~~~~~~~~~~~~~~----~~~~~---------------~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T TIGR00900 169 AISALLIVSVRIPELAA----SEIQA---------------LSN--AV--------LRDTREGIKFVLKNPLLRTLLLLA 219 (365)
T ss_pred HHHHHHHHhcccccCCC----ccccc---------------cch--hH--------HHHHHhHHHHHHcCcHHHHHHHHH
Confidence 6655444333 22211 00000 000 00 000112345566777777666665
Q ss_pred HHHHHHHhccc-hhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-
Q 012803 278 GLMVLQQFGGV-NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF- 355 (456)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~- 355 (456)
.+......... ...+.|..+.++......+.......++.+++.++.+++.||.+||+....+..+.+++...+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (365)
T TIGR00900 220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP 299 (365)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch
Confidence 55555443333 5556666554444444455777778889999999999999999999988877666666555544322
Q ss_pred -H-----HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 356 -L-----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 356 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
. ..++.++......+...++..|..|+++|+++.|+.+...+++..++|.+.|.+.|.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112333333334566778889999999999999999999999999999999999874
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=236.60 Aligned_cols=345 Identities=19% Similarity=0.184 Sum_probs=271.8
Q ss_pred ecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhh---HHHHHH
Q 012803 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---WLDLGR 134 (456)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~r 134 (456)
.+++.+.+.+|+|+|++|.+++.++..+...+..++.|.+.||||.|++..++.++..+-++..+++.+.+ ++++.+
T Consensus 33 ~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 33 FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 36777778899999999999999999999999999999999999999999999999999999999986555 999999
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHH----HHHHhcccc---chHHHHHhHHHHHH-HHHHh
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM----TYLIGAFLN---WRILALIGTIPCLV-QLIGL 206 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~----~~~l~~~l~---w~~~f~~~~~~~l~-~~~~~ 206 (456)
++.|++. ..+.....++++||||+++|.++|++. ..|+|..+ +|.+....+ ||....+..+..++ .+..+
T Consensus 113 ll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 113 LLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred HHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999984 577889999999999999999999999 77777554 555555557 99998888877777 45555
Q ss_pred hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhc
Q 012803 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (456)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (456)
+.+.|.|....+.+ +..+...+.++++++.|.+.+.+...+..+.+
T Consensus 191 ~~~~d~p~~r~~~~----------------------------------~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvg 236 (417)
T COG2223 191 LGMNDVPEHRASVK----------------------------------PQLPAQLKAVFSNKDTWLLSLLYFATFGGFVG 236 (417)
T ss_pred HHhCCChhhhcccc----------------------------------ccchhHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 66777663211000 00113455677889999999988888888777
Q ss_pred cchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-----------
Q 012803 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF----------- 355 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----------- 355 (456)
...+++.|+...+.....+++.......+.+.+.++++|+++||+|.+|.+......++++..++....
T Consensus 237 fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (417)
T COG2223 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV 316 (417)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence 778888888887777777888888888889999999999999999999998888888887777665431
Q ss_pred --HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHH
Q 012803 356 --LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS--STGTFFAFSAICSLTVL 431 (456)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~ 431 (456)
...+....+...-....+-.+..++| ++.|.+.|+...++.+|+..-|...|...+.. ....++.+..+.+++.+
T Consensus 317 ~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v 395 (417)
T COG2223 317 FVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395 (417)
T ss_pred HHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 11122233333334566777777777 57899999999999999999999999999933 34456666666666666
Q ss_pred HHHhcccC
Q 012803 432 FVAKLVPE 439 (456)
Q Consensus 432 ~~~~~~~~ 439 (456)
..+....+
T Consensus 396 ~~~~~y~r 403 (417)
T COG2223 396 LTWALYAR 403 (417)
T ss_pred HHHHHHHh
Confidence 66554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=257.13 Aligned_cols=335 Identities=13% Similarity=0.093 Sum_probs=238.2
Q ss_pred hhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH---H
Q 012803 46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---V 122 (456)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---~ 122 (456)
...+..+.......+..|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++++++ .
T Consensus 33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~ 112 (438)
T PRK10133 33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666788999999999999999999999999999999999999999999999999999999999875 4
Q ss_pred HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc-----------------
Q 012803 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----------------- 185 (456)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~----------------- 185 (456)
++++++.++++|+++|+|.+...+..++++.|+.|+++|.+.+++.+..+.+|..+++.++..
T Consensus 113 ~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l 192 (438)
T PRK10133 113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhcc
Confidence 688999999999999999999999999999998777777778999999999999988877531
Q ss_pred -------------ccchHHHHHhH-HHHHHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 012803 186 -------------LNWRILALIGT-IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYT 250 (456)
Q Consensus 186 -------------l~w~~~f~~~~-~~~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (456)
.+||++|+... +..++..+. ...+||.+. +++.
T Consensus 193 ~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~---------------------------- 240 (438)
T PRK10133 193 TPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS---------------------------- 240 (438)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc----------------------------
Confidence 14666665433 333332222 233444221 0000
Q ss_pred HHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 012803 251 ETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYAS-SIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMD 329 (456)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 329 (456)
++.+.+.....++++++|.++...+..++..........+.+.|+. +..+.+....+.......++.++++++.+++.|
T Consensus 241 ~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~ 320 (438)
T PRK10133 241 DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS 320 (438)
T ss_pred cccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011123456677887776665555555544443444444421 112222223347788889999999999999999
Q ss_pred hcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHH
Q 012803 330 KSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 404 (456)
Q Consensus 330 ~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 404 (456)
|+++|+.+..+..+.++++.+.... .....+.+++.....|..++...|..|+ +.+++.++.. ...+|+.++|
T Consensus 321 r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~ 398 (438)
T PRK10133 321 RFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHH
Confidence 9999998887766665554443322 1122345556666678888888888774 4678888876 4557899999
Q ss_pred HHHHHHHhhh
Q 012803 405 FTFNFLMKWS 414 (456)
Q Consensus 405 ~~~g~l~~~~ 414 (456)
.+.|.+.|..
T Consensus 399 ~i~G~l~~~~ 408 (438)
T PRK10133 399 PVMGFVSDAA 408 (438)
T ss_pred HHHHHHHHhc
Confidence 9999998853
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=254.14 Aligned_cols=328 Identities=15% Similarity=0.181 Sum_probs=240.9
Q ss_pred hccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHH
Q 012803 51 FGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWL 130 (456)
Q Consensus 51 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (456)
...+.....|.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+++++++.+
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34456667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHH-
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG- 205 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~- 205 (456)
++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.|++.++..++..+.
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888765 8999999888776665444
Q ss_pred hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHh
Q 012803 206 LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (456)
Q Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (456)
.++.||+++.. +++ + . ++.....++.++++.++...+...+......
T Consensus 177 ~~~~~~~~~~~----~~~--------------~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T TIGR00710 177 FFILPETLPYE----ARI--------------Q---I------------STYFETFLLLLKSKMFWGYALIYGASFGGFF 223 (385)
T ss_pred HHhCCCCCCCc----ccC--------------C---H------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 35566654210 000 0 0 0011123455667776665555444444333
Q ss_pred ccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHH-
Q 012803 286 GGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQ- 358 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~- 358 (456)
......+.+.....+......+.......++.+++.++.+++.||+++|+.+..+..+..++.+++.... ...
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3333344444333322222334667777888999999999999999999988877766666555443321 111
Q ss_pred ----HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 359 ----VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 359 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.+.+.......+.......|..| ++++++.++.+.....++.+.+.+.+.+.+
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11222222334555566677776 679999999999988766676667775444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=251.61 Aligned_cols=353 Identities=12% Similarity=0.106 Sum_probs=242.5
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 123 (456)
..+..+....+.....|.+|.+.+++|.+.++.++..+++.+++.++++++|+++||+|||++++.+.++++++++++++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34455555667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHH
Q 012803 124 SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (456)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~ 199 (456)
++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ |||+.|++.++..
T Consensus 101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999998876667778889999999999999999999999999999988765 8999999988887
Q ss_pred HHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 200 LVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 200 l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
++..+. ++.+||+++. +++.. + .+.....++++++++.++...+...
T Consensus 181 ~i~~~~~~~~lp~~~~~---~~~~~--------------~---------------~~~~~~~~~~ll~~~~~~~~~l~~~ 228 (413)
T PRK15403 181 LIAFVGLLLAMPETVKR---GAVPF--------------S---------------AKSVLRDFRNVFRNRLFLTGAATLS 228 (413)
T ss_pred HHHHHHHHHhCCCCccc---cCCCC--------------C---------------hHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 776544 4567876421 00000 0 0001123456778888887766665
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH----
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS---- 354 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---- 354 (456)
+.....+......|.++.+..+......++.......+.+++..+.+++.++..+++.......+..++..++...
T Consensus 229 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~ 308 (413)
T PRK15403 229 LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW 308 (413)
T ss_pred HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555444333444555443332222223355555666777777777776655444443322222222222222111
Q ss_pred --HH--HHHHHHHhccc---ccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 012803 355 --FL--FQVYTGSFSLG---MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICS 427 (456)
Q Consensus 355 --~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 427 (456)
.. .......+..+ ..+......- .-....+|++.++.+.....+..+++...+++.+.+....+.....++.
T Consensus 309 ~~~~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 309 PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred cccHHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 01111111122 2233332111 1122347999999999999999999999999988766666666555544
Q ss_pred HH
Q 012803 428 LT 429 (456)
Q Consensus 428 ~~ 429 (456)
+.
T Consensus 388 ~~ 389 (413)
T PRK15403 388 VI 389 (413)
T ss_pred HH
Confidence 44
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=251.37 Aligned_cols=352 Identities=16% Similarity=0.166 Sum_probs=236.3
Q ss_pred hhhhccccceecccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHH-HHHHHHHHHHHHHHHhc
Q 012803 48 SYVFGSAIGYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-FSDIVCIIGWVIIVFSK 125 (456)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~ 125 (456)
++..+...+...|.+|. +++++|.++.+.|++.+.+.+...+.+++.|+++||+||||.++ .+.++..++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 44445556666777775 67899999999999999999999999999999999999988765 46666677788889999
Q ss_pred hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhH--HHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHH
Q 012803 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF--TTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPC 199 (456)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~ 199 (456)
+++.+++.|+++|.+.+...|...++..|+.|+++|++. .+....+.++|..++|.+++.+ +||+.|++.++..
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988887888888888898887777644 5777778888999988887765 8999999988877
Q ss_pred HHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 200 LVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 200 l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
++..+. ++++||+|++..++. ++.+.++.++++.++......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 209 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPRGAPGAL------------------------------------TRLEVRGLLASRDTRLLFVACT 209 (375)
T ss_pred HHHHHHHHHhCCCcccCccccc------------------------------------CcchhhhhhcCcchHHHHHHHH
Confidence 665544 455788663210000 0001122344555554444333
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH--
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL-- 356 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 356 (456)
+............+.|....++......+..........+++.++.+++.||++||+.+..+.++..+....+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T TIGR00899 210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLW 289 (375)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222334444443333222222334445555567778889999999999999887766655444433332211
Q ss_pred ----HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHH
Q 012803 357 ----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLTVL 431 (456)
Q Consensus 357 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~ 431 (456)
...+.+.......+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..+ ...++..+++.++. .
T Consensus 290 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~-~ 367 (375)
T TIGR00899 290 ALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVA-L 367 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-H
Confidence 11122222222345556677888875 56799999999999999999999999998544 44444444444333 3
Q ss_pred HHHhcc
Q 012803 432 FVAKLV 437 (456)
Q Consensus 432 ~~~~~~ 437 (456)
+.....
T Consensus 368 ~~~~~~ 373 (375)
T TIGR00899 368 FCLLLI 373 (375)
T ss_pred HHHhee
Confidence 333433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=251.08 Aligned_cols=346 Identities=13% Similarity=0.015 Sum_probs=241.4
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Q 012803 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (456)
Q Consensus 60 ~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (456)
...+.+.+|+|.+..+.+++.+.+.+++.+.++++|+++||+|||++++.+.++.+++++.++++++. ++.|+++|+
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~ 100 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGI 100 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33445678999999999999999999999999999999999999999999999999999888877664 788999999
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHhhccCCChhHH
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESPRWL 216 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~ 216 (456)
+.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++..+..+.+||+|++.
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 180 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999999999888 455555555544444555556778765311
Q ss_pred HhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHH
Q 012803 217 AKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYAS 296 (456)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (456)
.++ +.++ . ...++ .....+.+++++..+.......+.+..........+.|.+
T Consensus 181 ~~~-~~~~-~-----------------~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (393)
T PRK11195 181 PGQ-SWNP-I-----------------ALLRD--------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAP 233 (393)
T ss_pred ccc-CCCH-H-----------------HHHHH--------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0 00000 0111245566666655554444444443344455666777
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--H---H-HHHHHHhcccccc
Q 012803 297 SIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF--L---F-QVYTGSFSLGMGG 370 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~~~~ 370 (456)
..++......+......+++.++++++.+++.||.++++.+..+.. .++....+.... . . ..+.+.+.....+
T Consensus 234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~ 312 (393)
T PRK11195 234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVV 312 (393)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 7666555566688888899999999999999999988887766643 333333222221 1 1 1122232222344
Q ss_pred cceeeecccCCccc-hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Q 012803 371 IPWVIMSEVFPINM-KGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 371 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
...+..++..|++. +|++.++.+...+++..++..+.+.+...+-...+.+.+...++...+.+.+
T Consensus 313 ~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 313 PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766554 7999999999999999999999997755555555554444444444444333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=256.45 Aligned_cols=331 Identities=24% Similarity=0.315 Sum_probs=243.5
Q ss_pred hhhccccceeccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchh
Q 012803 49 YVFGSAIGYSSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA 127 (456)
Q Consensus 49 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~ 127 (456)
+....+.....+.+| .+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 85 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNF 85 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhH
Confidence 334444455577788 8999999999999999999999999999999999999999999999999999997777777888
Q ss_pred hHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH
Q 012803 128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL 203 (456)
Q Consensus 128 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~ 203 (456)
+.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+ +||+.|++.+++.++..
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA 165 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999877 89999999999888866
Q ss_pred HH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHH
Q 012803 204 IG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (456)
Q Consensus 204 ~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (456)
++ ..+++++|+....+++.++. ++.+++....++.+++++..|.......+..+
T Consensus 166 il~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (352)
T PF07690_consen 166 ILFILFLPEPPPPRERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFF 220 (352)
T ss_dssp HHHHCCC---STTTT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHH
T ss_pred hhHhhhhhhcccccccccccccc-------------------------cccccccccccccccccchhhhhhhhhhHHHH
Confidence 54 34555544211111110000 00011111135566666766644444444444
Q ss_pred HHhccchhhHHhHHHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-------
Q 012803 283 QQFGGVNGIAFYASSIFISA-GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------- 354 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------- 354 (456)
.........+.|+...++.. ....+.......+..+++.++.+++.||+++++..........+..+.+...
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44444555555544444444 1334466777888888889999999999999877766666655555444321
Q ss_pred --HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHH
Q 012803 355 --FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS 404 (456)
Q Consensus 355 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~ 404 (456)
.....+.+.+.....+...++..|..|++++|++.|+.+...++|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 11223344444445677889999999999999999999999999999998
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=260.80 Aligned_cols=347 Identities=16% Similarity=0.136 Sum_probs=242.8
Q ss_pred cceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 012803 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR 134 (456)
Q Consensus 55 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 134 (456)
....++..|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALW 90 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34446677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHH-Hhccc----cchHHHHHhHHHHHHH-HHHhhc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL-IGAFL----NWRILALIGTIPCLVQ-LIGLCF 208 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~-l~~~l----~w~~~f~~~~~~~l~~-~~~~~~ 208 (456)
++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++. ++..+ +||+.|++.+++.++. ++..++
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999999999983 44433 8999999888776654 444566
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
.+|+|+....+++.++. +++.+++ ++..++..+..+...+++++++.++...+..++.........
T Consensus 171 ~~~~~~~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (379)
T TIGR00881 171 LRDSPQSCGLPPAEEMP----------NEEPDGD----AEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL 236 (379)
T ss_pred eCCCccccccCccccCc----------ccccccc----cccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 67765421111000000 0000000 000000011122334566777777777666666655544444
Q ss_pred hhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhH---HHHHHHHHHHH----H----HHH
Q 012803 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAA---GTCLGCLLAAL----S----FLF 357 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~---~~~~~~~~~~~----~----~~~ 357 (456)
.+.+.|..+..+......+.......++.+++.++.+++.||..+++....... ...++...... . ...
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (379)
T TIGR00881 237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC 316 (379)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 455555544333333344577778888999999999999998643332221111 11111111111 0 111
Q ss_pred HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012803 358 QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
....+.+..+..+....+..|..|++.|+++.|+.+....+|..++|.+.|.+.|..+
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 1223333333344455678899999999999999999999999999999999998443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=251.34 Aligned_cols=355 Identities=14% Similarity=0.061 Sum_probs=244.7
Q ss_pred hhhhhccccceecccccccccccCCChhh-----HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH
Q 012803 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAE-----YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (456)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 121 (456)
+.+..+...+...+.+|.+.+++|++..+ .|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 33444555566688899999999988654 4889999999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHH
Q 012803 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTI 197 (456)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~ 197 (456)
.++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.++
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999865 4577778889999999999999999999999999999888765 89999999888
Q ss_pred HHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHH
Q 012803 198 PCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276 (456)
Q Consensus 198 ~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (456)
+.++..+.. ++++|+++.. ++++ .. +.....+.++++..+.....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~----~~~~------------------~~------------~~~~~~~~~~~~~~~~~~~~ 226 (408)
T PRK09874 181 VLFLCFLVTLFCIRENFQPV----SKKE------------------ML------------HMREVVTSLKNPKLVLSLFV 226 (408)
T ss_pred HHHHHHHHHHHHhccCcccc----cchh------------------hh------------HHHHHHHhCcCCchHHHHHH
Confidence 776654443 4556543110 0000 00 00011223344443332222
Q ss_pred -HHHHHHHHhccchhhHHhHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHH
Q 012803 277 -VGLMVLQQFGGVNGIAFYASSIFISAGF---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (456)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 352 (456)
..............++.|.....+.... ..+......+++.+++.+..|++.||++||+.+..+..+.+++.+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 227 TTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 2222222222223334444332221111 112344455677788888999999999999998888777666555443
Q ss_pred HHH------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Q 012803 353 LSF------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAI 425 (456)
Q Consensus 353 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~ 425 (456)
... ...++.+.+.....+...+...+..|++.+|+..++.+....+|..++|.+.|.+.+. ++...+...+++
T Consensus 307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~ 386 (408)
T PRK09874 307 FVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGV 386 (408)
T ss_pred HhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHH
Confidence 321 1112233333334555566677888889999999999999999999999999999884 444555555555
Q ss_pred HHHHHHHHHhc
Q 012803 426 CSLTVLFVAKL 436 (456)
Q Consensus 426 ~~~~~~~~~~~ 436 (456)
.++.+++.+..
T Consensus 387 ~l~~~~~~~~~ 397 (408)
T PRK09874 387 VLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=254.67 Aligned_cols=338 Identities=18% Similarity=0.140 Sum_probs=237.1
Q ss_pred ecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
..+.+-.+.+|.+....+.+.+.++|+++++++++++|.+.||++..+.+....+++++..++....+|++.+++.|++.
T Consensus 65 ~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 65 VNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLL 144 (495)
T ss_pred hhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455567899999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc-------c---cchHHHHHhHHHHHH-HHHHh
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF-------L---NWRILALIGTIPCLV-QLIGL 206 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~-------l---~w~~~f~~~~~~~l~-~~~~~ 206 (456)
|+.++..+|....+++.|+.+++|++.++++.+..++|.++|++++.. . ||||.|++.++++++ +++.+
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 999999999999999999999999999999999999999999999866 2 999999999988877 55666
Q ss_pred hccCCChh--HHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 012803 207 CFIPESPR--WLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (456)
Q Consensus 207 ~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (456)
+++|++|. +..++.+++-. .++.+..+... ..++.+...+++.++++..|...+..++.....
T Consensus 225 ~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~~------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~ 289 (495)
T KOG2533|consen 225 FFLPDNPSKAWFLTDEEKELV---VERLRESPSGG------------IENKFKWKGFKEALKDPGVWPFSLCYFFLKLVN 289 (495)
T ss_pred EEecCChhhccccchHHHHHH---HHHHHhccCCC------------cccccCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence 88999985 11111111000 11111100000 001135567788899999999888888887765
Q ss_pred hccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhc----CCcchhhhhhHHHH-HHHHHHHHHHHHH-
Q 012803 285 FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS----GRRPLLLVSAAGTC-LGCLLAALSFLFQ- 358 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~-~~~~~~~~~~~~~- 358 (456)
.+..++.|.|+....+.+..+++.+.++..++++++.++.|+++||+ .+|........+.. ++.+.+.......
T Consensus 290 ~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~ 369 (495)
T KOG2533|consen 290 YGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPG 369 (495)
T ss_pred ccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 55555555555441112233455888999999999999999999995 44444333333322 2223322221111
Q ss_pred ----HHHHHh-cccccccceeeecccCCc-cchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 359 ----VYTGSF-SLGMGGIPWVIMSEVFPI-NMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 359 ----~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
.+.+.+ .....++.....++.... .++-+..+......+.+++++|.+.-..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~ 427 (495)
T KOG2533|consen 370 AYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSL 427 (495)
T ss_pred HhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccc
Confidence 111111 111234445555555543 4445555555556666776766665443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-31 Score=248.41 Aligned_cols=319 Identities=15% Similarity=0.126 Sum_probs=230.8
Q ss_pred ccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 012803 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (456)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (456)
..+...|.+|.+.+++|.++++.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.+++.
T Consensus 21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (401)
T PRK11043 21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL 100 (401)
T ss_pred HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..+++
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998877777788899999999899999988888888888888887765 99999999888877766555555
Q ss_pred CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccch
Q 012803 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (456)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (456)
+|+++. ++. ++++.+++++++++.++...+...+.........
T Consensus 181 ~~~~~~----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (401)
T PRK11043 181 KPSKKA----RKQ--------------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWL- 223 (401)
T ss_pred CCCCCc----ccc--------------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH-
Confidence 554320 000 0011234455666665544443333332222222
Q ss_pred hhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-------H----
Q 012803 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-------F---- 355 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~---- 355 (456)
.+.+.+.++.+.+.. .......++.+++.++.+++.||+++|+.........+++.+.+... .
T Consensus 224 ---~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (401)
T PRK11043 224 ---TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLL 300 (401)
T ss_pred ---HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 233444444455433 44555667888889999999999998886655544444433322111 0
Q ss_pred HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 356 LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
....+.+.......+.......|..| +++|++.|+.+.....++..++.+.|.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 301 IPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 01122222233334555555556666 6799999999999999999999999999874
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-31 Score=245.72 Aligned_cols=351 Identities=15% Similarity=0.118 Sum_probs=264.8
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHhhhcc
Q 012803 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGL 143 (456)
Q Consensus 66 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~ 143 (456)
..+++++..|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457999999999999999999999999999999999999999999999999999998875 556789999999999999
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHh-hccCCChhHHH
Q 012803 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL-CFIPESPRWLA 217 (456)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~-~~~~~~p~~~~ 217 (456)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+ ||+++|++.++.+++..+++ ++..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999999988877766 99999999999998866666 566777742
Q ss_pred hcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhc--ChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhH
Q 012803 218 KTGKGIESEAALQRLRGADADISEEAAEIREYTETLERL--SEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA 295 (456)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (456)
++. -.++|.+.+++...+++.+ .+.+++++++++.+|...+..+...........+.|.|+
T Consensus 223 -h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 223 -HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred -CCC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 110 1112222222221111111 477899999999999999999988888888888888888
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc--------c-hhhhhhHHHHHHHHHHHHHH-------HHHH
Q 012803 296 SSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--------P-LLLVSAAGTCLGCLLAALSF-------LFQV 359 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~-------~~~~ 359 (456)
.+.++..-.+.++...+..+...+..++.|.++||+.+| | .-.++....++.++.+.+.. ...+
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l 365 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL 365 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH
Confidence 888877777788999999999999999999999998653 1 12233333344444433321 1111
Q ss_pred HHHHhccccccc-ceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHH
Q 012803 360 YTGSFSLGMGGI-PWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK----WSSTGTFFAFSAICSLTVLFVA 434 (456)
Q Consensus 360 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~~~~~~~~~~~~~~~~~ 434 (456)
.......|.... .+....+.. ++..+..+|+.+....+.+.++|.+.|.+.. ..+...|++.+++.++..++..
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred HHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence 122222222222 222223334 4789999999999999999999999999984 2344556666666666665444
Q ss_pred hc
Q 012803 435 KL 436 (456)
Q Consensus 435 ~~ 436 (456)
++
T Consensus 445 ~f 446 (466)
T KOG2532|consen 445 FF 446 (466)
T ss_pred Ee
Confidence 44
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=248.13 Aligned_cols=319 Identities=18% Similarity=0.166 Sum_probs=219.4
Q ss_pred ccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 012803 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (456)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (456)
+.....+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 97 (392)
T PRK10473 18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAG 97 (392)
T ss_pred HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33444578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH-Hhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-GLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~-~~~~ 208 (456)
|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++..+ ..++
T Consensus 98 ~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 98 RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999999999887664 899999998877766444 3456
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
+||+++.. ++++ . ......++.++++.++.......+.........
T Consensus 178 ~~~~~~~~--~~~~----------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (392)
T PRK10473 178 LKETRPAR--APAA----------------S----------------SKPRENSESLLNRFFLSRLVITTLSVTVILTFV 223 (392)
T ss_pred cCCCCCcc--cCCc----------------c----------------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 67654210 0000 0 000111234455554443333333222222222
Q ss_pred hhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH---HHHH
Q 012803 289 NGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ---VYTG 362 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 362 (456)
...+.+... ..+.+. +.......++.+++.++.+++.||+++|+.+..+..+..++.+.+....... ....
T Consensus 224 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK10473 224 NTSPVLLME---QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGIT 300 (392)
T ss_pred HhCHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333322 234433 3566777888899999999999999999998888777776666555432111 1111
Q ss_pred Hhccccc-ccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 363 SFSLGMG-GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 363 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....+.. ........+..|.++|+ |..+....++..+++.+.+++.+
T Consensus 301 l~~~g~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 301 LICAGFSVGFGVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHhHHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11112334444544443 44445556677777777777776
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-31 Score=247.13 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=247.9
Q ss_pred HHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH
Q 012803 42 FVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII 121 (456)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~ 121 (456)
.+++...+..++..+...|.+|.+++++|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34455566667777788899999999999999999999999999999999999999999999999999999999999886
Q ss_pred HH---hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc------------
Q 012803 122 VF---SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------------ 186 (456)
Q Consensus 122 ~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------------ 186 (456)
.. .++++.+++.|++.|+|.|...+..+.++.+..|+++|++.+++.+...++|..++|.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 468999999999999999999999999999999999999999999999999999998876533
Q ss_pred ------------------cchHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHH
Q 012803 187 ------------------NWRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEI 246 (456)
Q Consensus 187 ------------------~w~~~f~~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (456)
+||++|++.+++.++..+...+ .||.++ ++ +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~----------------------- 216 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-A----------------------- 216 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-c-----------------------
Confidence 4999999888776665444333 333110 00 0
Q ss_pred HHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc--CCCc---hHHHHHHHHHHHHHH
Q 012803 247 REYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--GFSG---SIGMIAMVVIQIPMT 321 (456)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~ 321 (456)
++.+...+.++++|++.++...+..+++...+.... .|++.+..+. +.+. .........+..+|+
T Consensus 217 ------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~----s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 217 ------KQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCW----TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred ------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000011123456677777776666666666554433 3344433322 2222 234445557788999
Q ss_pred HHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHH
Q 012803 322 LLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS 396 (456)
Q Consensus 322 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 396 (456)
++++++.||+++|+.+.++..+.++..++.... .......+++..+++|..++...+..+++.+..+.++....
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~- 365 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI- 365 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-
Confidence 999999999999998877777776666655542 23335566777777899999999999876655455555543
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012803 397 WLGSWIISFTFNFLMKW 413 (456)
Q Consensus 397 ~~g~~i~~~~~g~l~~~ 413 (456)
+|+++.|++.|.+.|.
T Consensus 366 -~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 366 -IGGGIVPPLQGFIIDM 381 (410)
T ss_pred -hccchHHHHHHHHHHH
Confidence 9999999999999994
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=244.00 Aligned_cols=319 Identities=13% Similarity=0.106 Sum_probs=226.5
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 59 ~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
.|.+| .+++++|++..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45544 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHH-hhccCCCh
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIG-LCFIPESP 213 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~-~~~~~~~p 213 (456)
|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+ +||+.|++.++..++..+. .++.||.+
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 9999888888899999999999999999999999999999999998877 9999999988776654433 34455421
Q ss_pred hHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHH
Q 012803 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (456)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (456)
. ++.+ ++.+.+++++++++.++...................+|.
T Consensus 190 ~-----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (400)
T PRK11646 190 L-----STVR-------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPI 233 (400)
T ss_pred c-----cccc-------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0000 001112445566666554444333332222222233444
Q ss_pred hHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH-hhcCCcchhhhhhHHHHHHHHHHHHHHHHH------HHHHHhcc
Q 012803 294 YASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLM-DKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------VYTGSFSL 366 (456)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 366 (456)
|..+..+ .....+.......+....+....+++. ||++.++.+..+..+.+++..++....... .+.+....
T Consensus 234 ~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~ 312 (400)
T PRK11646 234 MVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSI 312 (400)
T ss_pred hHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4433222 112223444445555554444445555 456656666666666666665554331111 11222222
Q ss_pred cccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012803 367 GMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS 414 (456)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 414 (456)
...+...++..+..|+++||++.|+.+....+|..+||.+.|.+.|.+
T Consensus 313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 313 IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 234566788889999999999999999999999999999999999953
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=244.47 Aligned_cols=352 Identities=17% Similarity=0.136 Sum_probs=251.1
Q ss_pred HHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHH
Q 012803 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 116 (456)
....+.+.++.+.+...+...+..+.+.+++.+|++++..|++.+.+.+.+.+++|++|+++|||.||+++..|..+|.+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 34445555556666666666667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHH
Q 012803 117 GWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRIL 191 (456)
Q Consensus 117 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~ 191 (456)
+.+.+++++.||+++++|.+.|+|.+...|.++++++|.+|.++|++++++++.+.++|..+|.+.+..+ .|||.
T Consensus 111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a 190 (493)
T KOG1330|consen 111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA 190 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998888766 49999
Q ss_pred HHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhh
Q 012803 192 ALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYA 270 (456)
Q Consensus 192 f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (456)
|+..++++++..++. ++++|++|- ..++. .+++.. .......-.+.+.+.+++.+
T Consensus 191 f~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~~~------------~~~~ts~~kDl~~l~~~~v~ 246 (493)
T KOG1330|consen 191 FRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGENKM------------VKPFTSVWKDLKVLAKIKVF 246 (493)
T ss_pred EEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCCcC------------CCCccchHHHHHHHHccCce
Confidence 999999998866555 566665431 00000 000000 00000111223334444666
Q ss_pred hHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCC----cchhhhhhHH
Q 012803 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGR----RPLLLVSAAG 343 (456)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~----~~~~~~~~~~ 343 (456)
....+......+...+...+.|.+.+..+...+.+.. ....+...++.+|.+++|.++||+.| -.......+.
T Consensus 247 v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~ 326 (493)
T KOG1330|consen 247 VLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLS 326 (493)
T ss_pred eeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHH
Confidence 6666666666666666667777777766666654333 66777778899999999999999532 1222333222
Q ss_pred HHHHHHHHHH-------H----HH---HHHHHHHhcccc-cccceeeecccCCccchhhHhHHHHHHHHH-HHHHHHHHH
Q 012803 344 TCLGCLLAAL-------S----FL---FQVYTGSFSLGM-GGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFTF 407 (456)
Q Consensus 344 ~~~~~~~~~~-------~----~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~ 407 (456)
.+.+...... . .. ..++++...... .....-+..|++|++.|.++.++-..+..+ |.+-+|++.
T Consensus 327 ~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~iv 406 (493)
T KOG1330|consen 327 AALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIV 406 (493)
T ss_pred HhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCccee
Confidence 2222221111 0 01 112222222222 234445667888999999999999988774 555566699
Q ss_pred HHHHh
Q 012803 408 NFLMK 412 (456)
Q Consensus 408 g~l~~ 412 (456)
|.+.|
T Consensus 407 Gilsd 411 (493)
T KOG1330|consen 407 GILSD 411 (493)
T ss_pred hhHHH
Confidence 99998
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=242.49 Aligned_cols=339 Identities=17% Similarity=0.129 Sum_probs=226.7
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH---H-hchhhHHHHHHHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---F-SKAAWWLDLGRLL 136 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l 136 (456)
.++.+.+|+|.++++.|++.+.+.+++.+++++.|+++||+||||++..+.++++++++++. + .++++.+++.|++
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 114 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI 114 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence 44556688999999999999999999999999999999999999999999999998877653 3 3578888999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHH-HHHHHHhccc----cchHHHHHhHHHHHHHHH-HhhccC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGV-SMTYLIGAFL----NWRILALIGTIPCLVQLI-GLCFIP 210 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l----~w~~~f~~~~~~~l~~~~-~~~~~~ 210 (456)
+|++.+...+...+.+.+++|+++|++++++.+.+.++|. .++|.+++.+ ||+..++......++..+ ..++.+
T Consensus 115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999888777777888899999999999999999999997 5788887654 766655554433333322 233344
Q ss_pred CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchh
Q 012803 211 ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNG 290 (456)
Q Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (456)
+.++. ++++++ ++. ++....+++++++|.++...+..++.....+....
T Consensus 195 ~~~~~--~~~~~~-----------------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (402)
T TIGR00897 195 DIFTP--QHMQTR-----------------EKF-----------SELGKAATILFTNPNVLLGGMVRIINTIGLFGFAV- 243 (402)
T ss_pred CCCCc--ccccCC-----------------cch-----------hhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH-
Confidence 43210 000000 000 00011234567777777666555554444333333
Q ss_pred hHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-hhhHHHHHHHHHHHHH-----------H
Q 012803 291 IAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-VSAAGTCLGCLLAALS-----------F 355 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~-----------~ 355 (456)
|.|.+.++.+.+. +.......++.+++.+..|+++||++||+... .+.+..+++...+... .
T Consensus 244 ---~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 320 (402)
T TIGR00897 244 ---FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL 320 (402)
T ss_pred ---HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence 4444444444433 35556677889999999999999999887653 2222232222222110 1
Q ss_pred HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHH
Q 012803 356 LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVA 434 (456)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~ 434 (456)
...+..+.+..+..+. .....|..| ++|+++.|+.+...++|+.++|.+.|.+.| .+....+++.+++.++..++..
T Consensus 321 ~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 321 IIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 1112223322222232 344556544 689999999999999999999999999999 4555666666666555555444
Q ss_pred h
Q 012803 435 K 435 (456)
Q Consensus 435 ~ 435 (456)
+
T Consensus 399 ~ 399 (402)
T TIGR00897 399 F 399 (402)
T ss_pred H
Confidence 3
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=242.44 Aligned_cols=323 Identities=19% Similarity=0.232 Sum_probs=226.0
Q ss_pred ccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 012803 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (456)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (456)
+.+...|.+|.+.+++|+++++.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH-HHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL-IGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~-~~~~~ 208 (456)
|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.+++.++.. ...++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998899999999999999999999999999999999999988765 89999998887776654 34456
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
+||+++.. ++. +.+. ++...+.++.++++..+...+...+.........
T Consensus 166 ~~~~~~~~---~~~---------------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (377)
T PRK11102 166 IPETLPKE---RRQ---------------PFHL-------------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFL 214 (377)
T ss_pred CCccCccc---ccC---------------CCCh-------------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 67754210 000 0000 0001123445666665554444433333222222
Q ss_pred hhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHH-HH--
Q 012803 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLF-QV-- 359 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~-~~-- 359 (456)
...+.+..+..+......+.......++.+++.++.+++.||+|+|+.+..+..+..+..+.+... ... ..
T Consensus 215 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (377)
T PRK11102 215 TAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV 294 (377)
T ss_pred HcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 233333332222222233467778888899999999999999999998887766543332222111 000 01
Q ss_pred -HHHHhcccccccceeeecccCCccchhhHhHHHHHHHH-HHHHHHHHHHH
Q 012803 360 -YTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW-LGSWIISFTFN 408 (456)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~g~~i~~~~~g 408 (456)
..........+.......|..| +.++++.++.+.... +|..+++.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111112233345567666 789999999887654 66666666543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=239.55 Aligned_cols=329 Identities=27% Similarity=0.372 Sum_probs=258.7
Q ss_pred hhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc
Q 012803 46 CGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK 125 (456)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 125 (456)
+..+....+.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS 85 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence 34445555666668888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHH
Q 012803 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV 201 (456)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~ 201 (456)
+++.+++.|++.|++.+...+...+++.|++|+|+|++.+++......+|..++|.+++.+ +||+.+++.++..++
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877 799999998887777
Q ss_pred HHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHH
Q 012803 202 QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMV 281 (456)
Q Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (456)
..+...+++ |..+......++..
T Consensus 166 ~~~~~~~~~---------------------------------------------------------~~~~~~~~~~~~~~ 188 (352)
T cd06174 166 LALLLLFLL---------------------------------------------------------RLLLLLALAFFLLS 188 (352)
T ss_pred HHHHHHHHH---------------------------------------------------------HHHHHHHHHHHHHH
Confidence 655544322 22233333333333
Q ss_pred HHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcc-hhhhhhHHHHHHHHHHHHHH-----
Q 012803 282 LQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRP-LLLVSAAGTCLGCLLAALSF----- 355 (456)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~----- 355 (456)
..........+.+..+..+......+.......++.+++.++.+++.||++||+ .+..+..+..++.+.+....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 333222333333333222222223347778888999999999999999999999 88888888877777665532
Q ss_pred -HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHH
Q 012803 356 -LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVL 431 (456)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~ 431 (456)
....+.+.......+...++..|..|+++|++..|+.+...+++..++|.+.|.+.+. +....+...+++.++..+
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 2224445555556788889999999999999999999999999999999999999974 444445555555444443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=242.57 Aligned_cols=328 Identities=15% Similarity=0.125 Sum_probs=238.1
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 59 ~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
.|.+| .+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALI 106 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45444 46788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHh-hccCCCh
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL-CFIPESP 213 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~-~~~~~~p 213 (456)
|.+.+...+...++..|.+|+++|++++++.....++|..++|.+++.+ +|+..|++.++..++..+.. +++||++
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9888877888889999999999999999999999999999999998877 89999998887777654443 4455543
Q ss_pred hHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHH
Q 012803 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (456)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (456)
+. ++.+ + . +..+.++.++++.++......++..+.........+.
T Consensus 187 ~~----~~~~-----------------~--------~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (395)
T PRK10054 187 KA----IATE-----------------T--------G------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ 231 (395)
T ss_pred cc----cccc-----------------h--------h------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence 10 0000 0 0 0011244567777776666655555444333345555
Q ss_pred hHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH--HH--HH---HHHHH
Q 012803 294 YASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--FL--FQ---VYTGS 363 (456)
Q Consensus 294 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~---~~~~~ 363 (456)
|.+... +.+.+. +.......+..+......+++.||.++|+.+..+..+.+++...+... .. .. ...+.
T Consensus 232 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (395)
T PRK10054 232 YVMVVA-DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTV 310 (395)
T ss_pred HHHHhc-ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 554432 222222 244444555555666788899999999998888877777666555432 11 11 11222
Q ss_pred hcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012803 364 FSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 423 (456)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~ 423 (456)
......|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.+...++.+.
T Consensus 311 g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 311 GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHH
Confidence 222224566677888899999999998765 67799999999999999966555444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=241.42 Aligned_cols=324 Identities=20% Similarity=0.203 Sum_probs=217.6
Q ss_pred ccccccccccC--CChhhHHHHHHH-----HHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhh----
Q 012803 60 PAQSGITNDLG--LSVAEYSLFGSI-----LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW---- 128 (456)
Q Consensus 60 ~~~~~i~~~~~--~~~~~~~~~~s~-----~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~---- 128 (456)
+..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence 33344445533 445566554443 3344457899999999999999999999999999999999999875
Q ss_pred ----HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc------------ccchHHH
Q 012803 129 ----WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------------LNWRILA 192 (456)
Q Consensus 129 ----~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------------l~w~~~f 192 (456)
.+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|.++++.++.. .+||+.|
T Consensus 94 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~ 173 (394)
T TIGR00883 94 WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPF 173 (394)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHH
Confidence 488999999999999999999999999999999999999999999999998876532 3899999
Q ss_pred HHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhh--h
Q 012803 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY--A 270 (456)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 270 (456)
++.+++.++........+|+|++..++++ +++.+.+.++.++++. +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 221 (394)
T TIGR00883 174 LVSAVLVLIGLYLRRNLEETPVFEKAQEK--------------------------------HKKKRGPIRETLTKHRKPF 221 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHhc--------------------------------cccccCCHHHHHHhchHHH
Confidence 98877776666555666776542111100 0111223444555443 3
Q ss_pred hHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHH-H
Q 012803 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC-L 349 (456)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~ 349 (456)
+.......+............+.|.....+......+.......++.+++.++.++++||++||+.+.....+..+.. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 301 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 333333333333322222333444332222222233466677778889999999999999999987765444333322 1
Q ss_pred HHH-HH--------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 012803 350 LAA-LS--------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 350 ~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
.+. .. .......+.......+...++..|.+|++.|+++.++.+ ....+|..++|.+.|++.|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 111 11 111122233333445667788999999999999999854 4456888899999999999544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=238.61 Aligned_cols=322 Identities=14% Similarity=0.075 Sum_probs=223.9
Q ss_pred cceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 012803 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGR 134 (456)
Q Consensus 55 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 134 (456)
.+...|.+|.+.+++|.++.+.+++.+.+.+++.++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS 103 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH-HHhhcc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL-IGLCFI 209 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~-~~~~~~ 209 (456)
++.|++.+...+....+..|.+++++|+++.+....+..+|..++|.+++.+ +||+.|++.++..++.. +..+++
T Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 183 (394)
T PRK11652 104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWM 183 (394)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998887777788889999999999999999999999999999888765 89999999877666543 344567
Q ss_pred CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccch
Q 012803 210 PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN 289 (456)
Q Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (456)
||+++.. +++ ++....+++.++++..+..................
T Consensus 184 ~~~~~~~---~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T PRK11652 184 PETRPAD---ARR--------------------------------TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEA 228 (394)
T ss_pred CccCccc---cch--------------------------------hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7764210 000 00112234455666655544433333222211122
Q ss_pred hhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----------HHHH
Q 012803 290 GIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-----------FLFQ 358 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 358 (456)
..+.+..+.++......+.......++.+++..+.+++.||.+++... ......++.+.+... ....
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGVMNVWTLLVPA 306 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 233333332222222233555566677778888888888888733222 222222221111110 1111
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS 414 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~ 414 (456)
.+.+.......+...++..|..| ++++++.++.+....+|..+++.+.+.+.+..
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 22222223335666677778877 67899999999999999999999999887643
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=234.35 Aligned_cols=321 Identities=17% Similarity=0.178 Sum_probs=229.7
Q ss_pred cccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 012803 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDL 132 (456)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (456)
......+|.+|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+||||++.++.++..++.+.+ .+++++.+++
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 334556889999999999999999999999999999999999999999999999999999988888877 7889999999
Q ss_pred HHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc------cchHHHHHhHHHHHHHHHHh
Q 012803 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~ 206 (456)
.|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.++..+ +||+.|...++..++...
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-- 169 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-- 169 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 9999999999888888888889886 5799999999999999999888776554 399988776655444322
Q ss_pred hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhc
Q 012803 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (456)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (456)
.++|+.++ +++. + ++..+...++.+|++..+...+..++....+..
T Consensus 170 ~~~~~~~~----~~~~-------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T TIGR00896 170 AWIPQVRR----RVAA-------------N-----------------QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS 215 (355)
T ss_pred HHhhhhcc----ccCC-------------C-----------------CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence 23343321 0000 0 000112234566777766655544444444333
Q ss_pred cchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhhhhHHHHHHHHHHHHHH-----HH
Q 012803 287 GVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSG-RRPLLLVSAAGTCLGCLLAALSF-----LF 357 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~-----~~ 357 (456)
...+++.|. ++.+.+ .+.......++.++++++.|++.||++ ||+.+..+..+.+++.+.+.... ..
T Consensus 216 ~~~~lp~~~----~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (355)
T TIGR00896 216 LIGWLPAIL----ISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAW 291 (355)
T ss_pred HHHHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444444 444443 346777888999999999999999995 55566666666666555444321 11
Q ss_pred HHHHHHhcccccccceeeeccc-CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012803 358 QVYTGSFSLGMGGIPWVIMSEV-FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
..+.+++.....+...+...+. .++++++...++.+...+++..++|.+.|++.|+.+
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233333333345544555444 345677999999999999999999999999998443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=241.47 Aligned_cols=353 Identities=13% Similarity=0.144 Sum_probs=237.2
Q ss_pred hccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-----CchHH-HHHHHHHHHHHHHHHHHh
Q 012803 51 FGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MGFSDIVCIIGWVIIVFS 124 (456)
Q Consensus 51 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~ 124 (456)
.+.......+.+|...++.|.+.++++.. +.....+ ++.+++|+++||+ ||||. +..+.+..+++..+.++.
T Consensus 24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~ 101 (491)
T PRK11010 24 SGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL 101 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 34445566778888889999999999997 4444444 5889999999999 99885 667777777777777775
Q ss_pred ---chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhH
Q 012803 125 ---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGT 196 (456)
Q Consensus 125 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~ 196 (456)
++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ |||..|++.+
T Consensus 102 ~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a 181 (491)
T PRK11010 102 EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMA 181 (491)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999988665443 8999999988
Q ss_pred HHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHH
Q 012803 197 IPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVG 276 (456)
Q Consensus 197 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (456)
+..++..+..+++||+++.. ++ ++ +. ++....++++.++++..+.....
T Consensus 182 ~l~ll~~l~~~~~~e~~~~~---~~-~~----------------~~-----------~~~~~~~l~~~~~~~~~~~~ll~ 230 (491)
T PRK11010 182 ALLIPCIIATLLAPEPTDTI---PV-PK----------------TL-----------EQAVVAPLRDFFGRNNAWLILLL 230 (491)
T ss_pred HHHHHHHHHHHhcCCCcccc---cc-cc----------------ch-----------hhhHHHHHHHHHcCcCHHHHHHH
Confidence 88777666656677764210 00 00 00 00011234456666655555444
Q ss_pred HHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHH-HHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHH
Q 012803 277 VGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGM-IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (456)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 352 (456)
..+..........+.+.|+. +..+.+.. ... ....++.+++.+++|+++||+++|+.+..+.++.++..+.+.
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~---~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~ 307 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLI---RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYW 307 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44443333323333343432 23454444 333 344568889999999999999998877665555444332221
Q ss_pred ---HH--HH-H---HHHH-HHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 012803 353 ---LS--FL-F---QVYT-GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAF 422 (456)
Q Consensus 353 ---~~--~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 422 (456)
.. .. . ..+. .+......+..+++..+..+++.+++..|+.+....+|..+++.+.|++.|..++..++.+
T Consensus 308 ~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~ 387 (491)
T PRK11010 308 LLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLF 387 (491)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 11 00 0 0111 1111112344567778888988999999999999999999999999999995444444444
Q ss_pred HHHHHHHHHHHHhcccC
Q 012803 423 SAICSLTVLFVAKLVPE 439 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~~~ 439 (456)
..++.+.+++.....++
T Consensus 388 ~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 388 SVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=231.20 Aligned_cols=341 Identities=16% Similarity=0.168 Sum_probs=210.4
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHH-HHHHHHHHHhhhhcccCchHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 012803 59 SPAQSG-ITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (456)
Q Consensus 59 ~~~~~~-i~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~G~r~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (456)
.|.+|. +.+++|+++++.|++.+...+ ++.++.+++|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.
T Consensus 35 ~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (393)
T PRK15011 35 TPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGV 113 (393)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 565554 678999999999999877655 55555555555 9999999875 5666666788888889999998876665
Q ss_pred HHHhhhcccccccceeeeeccCCCCc--hhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH-Hhhc
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-GLCF 208 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~-~~~~ 208 (456)
+.|...+...|...+++.|+.++++| +...++.+.+.++|.+++|++++.+ |||..|++.++..++..+ .+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 55544556778888888888776655 4556788889999999999998766 999999998887766544 4456
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
+||+++. +++.+ + + .+..++ +.+..+.................
T Consensus 194 ~~~~~~~---~~~~~------------~-~-----------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
T PRK15011 194 LPSMRKE---LPLAT------------G-T-----------LEAPRR----------NRRDTLLLFVICTLMWGTNSLYI 236 (393)
T ss_pred cCccCCC---Ccccc------------c-c-----------cccccc----------ccccHHHHHHHHHHHHHHHHHHH
Confidence 7776421 00000 0 0 000000 01111222222222222222222
Q ss_pred hhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH------HHHH
Q 012803 289 NGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------VYTG 362 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 362 (456)
...+.|..+.++.+....+.......++.+++.++.|+++||++||+.+..+.....+....+....... .+.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 316 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA 316 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444433322222333555555667788899999999999999877666554444333322211110 1111
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.......+....+..|..| ++++++.++++...++|..++|.+.|.+.|..++...+.....+.+.+.+..+..|
T Consensus 317 ~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111112333456678888 46999999999999999999999999999954444443434444444444444444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=232.02 Aligned_cols=340 Identities=14% Similarity=0.039 Sum_probs=241.8
Q ss_pred hhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHH----HHHHHHHHHHHHHHHHh
Q 012803 49 YVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM----GFSDIVCIIGWVIIVFS 124 (456)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~----~~~~~~~~~~~~~~~~~ 124 (456)
+.+....+...|.+|.+.+|+|.|.+++|++.+.+.+...++++++|+++||+|||+.. ..+..+..+ ..+..+
T Consensus 14 ~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 91 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA 91 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 33334456678899999999999999999999999999999999999999999985433 222222222 244567
Q ss_pred chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHH
Q 012803 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCL 200 (456)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l 200 (456)
++++.+++.|+++|.+.+...|...++..++ +++|++..+......++|.+++|++++.+ |||..|++.....+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~ 169 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA 169 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 8999999999999999888888888887654 46788999999999999999999988776 99999988665533
Q ss_pred HHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHH
Q 012803 201 VQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLM 280 (456)
Q Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (456)
+..+.. .++|+++. +++.++ .++.+..+.++++|+|+++...+..++.
T Consensus 170 ~~~~~~-~~~~~~~~---~~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~~l~~~~l~ 217 (382)
T TIGR00902 170 FMLIGF-LIKPTIPP---KDAIPE----------------------------DESQGDSAFIALLKNPMNLRFLAAVCLI 217 (382)
T ss_pred HHHHHH-HcCCCCCC---Cccccc----------------------------cccccchhHHHHHcChHHHHHHHHHHHH
Confidence 333333 33333210 000000 0001122356778888888887777766
Q ss_pred HHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH-
Q 012803 281 VLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL- 356 (456)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~- 356 (456)
...........+.|. ++.+.+. +.......++.+++.++.+++.||+++|+.+..+.+...+....+.....
T Consensus 218 ~~~~~~~~~~~~~~l----~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 293 (382)
T TIGR00902 218 QGAHAAYYGFSAIYW----QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF 293 (382)
T ss_pred HHHHHHHHHHHHHHH----HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 665544444444444 3444443 35666777888888999999999999999999999988888777764321
Q ss_pred -----HHHHHHHhcccccccceeeecccCCccchhhHhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 012803 357 -----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTL-VSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLT 429 (456)
Q Consensus 357 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~ 429 (456)
...+.+.......+....++++. |+++++++.++++. ...+|..++|.+.|++.|..+...++..+.+.++.
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22333433344455566777877 88899999999875 56799999999999999965555566666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=236.04 Aligned_cols=320 Identities=19% Similarity=0.174 Sum_probs=218.8
Q ss_pred ceecccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHH
Q 012803 56 GYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLG 133 (456)
Q Consensus 56 ~~~~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 133 (456)
....+..|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+++++++ +++.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL 97 (366)
T ss_pred HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334788884 9999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh----cc----------ccchHHH-HHhHHH
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AF----------LNWRILA-LIGTIP 198 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~----~~----------l~w~~~f-~~~~~~ 198 (456)
|+++|++.+. .+...+++.|++|+++|++++++.....++|..+++.++ .. .+||+.| +..++.
T Consensus 98 ~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 98 RLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176 (366)
T ss_pred HHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 9999998664 466778999999999999999999866666665555443 21 2699999 444544
Q ss_pred HHH-HHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
..+ ..+...+.+|+|+.. ++++ +. ...+..... ++.......+.++++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~----~~~~-~~-----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 234 (366)
T TIGR00886 177 LLLPALLIFFVGADTPPGK----PATG-KL-----SFKGARWSV------------GTGALGDQLKVFRDRHTWILALLY 234 (366)
T ss_pred HHHHHHHHHHhcccCCccc----ccch-hc-----ccccccccc------------cchhHHHHHHHHhccchhhHHHHH
Confidence 443 444445566665311 0000 00 000000000 000111345566777776666655
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-- 355 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 355 (456)
.+............+.|..+.++......+.......+..++++++.+++.||+++|+....+....+.+..++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T TIGR00886 235 SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 555554444445555555544433333445667777888899999999999999998877766665555544443211
Q ss_pred --H-----HHHH-HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHH
Q 012803 356 --L-----FQVY-TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG 399 (456)
Q Consensus 356 --~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 399 (456)
. .... ...+.....+..+....+..| +++|++.|+.+...++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 315 PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 0 1111 122222234556677788877 68999999999888765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=228.95 Aligned_cols=354 Identities=14% Similarity=0.073 Sum_probs=219.4
Q ss_pred ccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH---Hhchhh-HHHHH
Q 012803 59 SPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FSKAAW-WLDLG 133 (456)
Q Consensus 59 ~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~-~l~~~ 133 (456)
.|.+| .+.+++|+++.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++..... .++... .....
T Consensus 30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLG 109 (420)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 35666999999999999999999999999999999999999999887666655433221 111111 01122
Q ss_pred HHHHHhhhcccccccceeeeeccC--CCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITP--KNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.++.++..+.........+.++.+ .+++++..+......++|..++|.+++.+ +|++.|++.++..++..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 110 AIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhc
Confidence 222233333223332223333332 24467788888888889999999888877 8999999988887776655555
Q ss_pred cC-CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhcc
Q 012803 209 IP-ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 287 (456)
Q Consensus 209 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (456)
.+ |+++....+++ + .++.++.+....++.+|++.++...+............
T Consensus 190 ~~~~~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 190 AKPDAPSTAKVANA--L-------------------------GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred ccccccchhhhccc--h-------------------------hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence 43 33221000000 0 00000111123345667777665555443433333333
Q ss_pred chhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--H-H---H
Q 012803 288 VNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF--L-F---Q 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~-~---~ 358 (456)
....+.|..+.....+.+. +.......+..+++.++.|++.||+++|+.+..+..+.+++..++.+.. . . .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 322 (420)
T PRK09528 243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILK 322 (420)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3456667666554434332 3556666778889999999999999999998888777777666655431 1 1 1
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHH-HHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhc
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL-VTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
.+.+.......+....+..|..|++.+++..+. .+....+|.+++|.+.|++.|. ++...+...+++.++..++....
T Consensus 323 ~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 323 LLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 111111111123344677888899999888766 6778889999999999999994 55555665666655555555544
Q ss_pred ccC
Q 012803 437 VPE 439 (456)
Q Consensus 437 ~~~ 439 (456)
.++
T Consensus 403 ~~~ 405 (420)
T PRK09528 403 LSG 405 (420)
T ss_pred hcC
Confidence 444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=224.69 Aligned_cols=344 Identities=13% Similarity=0.031 Sum_probs=230.2
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCc-hHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-RGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
.+..+.+.+++|++.+|.|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344456778899999999999999999999999999999999965 8888999999989898999999999999999999
Q ss_pred Hhhhcccccccceeee--------eccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHH
Q 012803 138 GYGMGLLSYVVPVYIA--------EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~ 205 (456)
|++.+...+...++.. |......|.+..| .+|.+++|.+++.+ .|+ +|++.++..++..+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF 175 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH
Confidence 9987766665554421 2222233445444 24566666666544 243 455666655555555
Q ss_pred hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHh
Q 012803 206 LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (456)
Q Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (456)
.+++||+|+. +++++. + . ++..+.+.++++|++.++...+..++......
T Consensus 176 ~~~~~e~~~~---~~~~~~-------------~-------~-------~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 176 ALTLPDIPVA---KSTAKM-------------S-------I-------KVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred HhcCCCCCCC---cccccc-------------C-------H-------HHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH
Confidence 6677887531 000000 0 0 00011123456677777666665555444322
Q ss_pred ccchhhHHhHHHHHHHcCC-----------CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH
Q 012803 286 GGVNGIAFYASSIFISAGF-----------SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (456)
. ...+.+.+.++.+. ..+.......+..+++.+..++++||+|+|+.+..+.++.+++..++...
T Consensus 226 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 226 I----TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred H----HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 2 22333333333221 22467777778888999999999999999999999988887776555431
Q ss_pred H------H----HHHHHHHhcccccccceeeecccCCccchhhHhHHHH-HHHHHHHHHHHHHHHHHHhhh-------hh
Q 012803 355 F------L----FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFTFNFLMKWS-------ST 416 (456)
Q Consensus 355 ~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~~~-------~~ 416 (456)
. . ..++.+.......+....++.|.+|++.|+++.|+.+ ....+|.++||.+.|++.|.. +.
T Consensus 302 ~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 302 DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 0 1 1122222222334555677899999999999999997 567899999999999999842 23
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCC
Q 012803 417 GTFFAFSAICSLTVLFVAKLVPETKGR 443 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
..+...+++.++.+++.+++.++++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 455666666677777777777766443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=209.84 Aligned_cols=351 Identities=17% Similarity=0.131 Sum_probs=266.7
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH-
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV- 122 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~- 122 (456)
.+...++.+.......+.+|++++.++++..|.+++...++.++.+.+++.|++.+|+|+|+.++.|+.++++++.+..
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~p 97 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWP 97 (422)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3344455566666778899999999999999999999999999999999999999999999999999999999999984
Q ss_pred --HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--------------
Q 012803 123 --FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------------- 186 (456)
Q Consensus 123 --~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-------------- 186 (456)
...++..++++-++.|.|.+....+++.+++...++++..+.+.+.+..+++|.+++|++++.+
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~ 177 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQI 177 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence 5678999999999999999999999999999999998889999999999999999999998655
Q ss_pred ---------cchHHHHHhHHHHHHHHHHhhcc--CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhh
Q 012803 187 ---------NWRILALIGTIPCLVQLIGLCFI--PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLER 255 (456)
Q Consensus 187 ---------~w~~~f~~~~~~~l~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
.||++|...+...++..+..... |+.+.. .++..+
T Consensus 178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------------------------~~~~~~ 223 (422)
T COG0738 178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------------------------APSLGA 223 (422)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc----------------------------------cccccc
Confidence 37788877776666555544433 333210 000011
Q ss_pred cChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 012803 256 LSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRP 335 (456)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 335 (456)
.+.....+++++|+.+.-.+..+++...+.....+++.|+.+..+....+.....+....+.++|++++.++.+|+...+
T Consensus 224 ~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k 303 (422)
T COG0738 224 SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK 303 (422)
T ss_pred cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 11115678889999999888888888877666666666655442112223347788888999999999999999999888
Q ss_pred hhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 336 LLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
.+....++..+.++...+. .......+.+...++|..++...+..| + .....|..-....+|+++.|++.|++
T Consensus 304 ~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 304 YLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHH
Confidence 8777665554444444332 344467788888889999999999998 3 33444455567789999999999999
Q ss_pred Hhhhhh-hHHHHHHHHHHHHH
Q 012803 411 MKWSST-GTFFAFSAICSLTV 430 (456)
Q Consensus 411 ~~~~~~-~~~~~~~~~~~~~~ 430 (456)
.|..+. ..+......|.+..
T Consensus 382 ~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 382 ADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 994443 33333455555444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=222.84 Aligned_cols=332 Identities=14% Similarity=0.063 Sum_probs=225.9
Q ss_pred ccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCch----HHHHHHHHHHHHHHHHHHHhchhhH
Q 012803 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR----GTMGFSDIVCIIGWVIIVFSKAAWW 129 (456)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r----~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (456)
+.+...|.+|.+.+|+|.|.++.|++.+++.++..++++++|+++||+||| +.+.++..+. .......++++|.
T Consensus 19 ~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 96 (382)
T PRK11128 19 AYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWL 96 (382)
T ss_pred HHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHH
Confidence 345568888889999999999999999999999999999999999999984 3333222222 2233444688999
Q ss_pred HHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHH
Q 012803 130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 130 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~ 205 (456)
+++.|++.|++.+...|...++..++ +++|++..+......++|..+||++++.+ |||..|++.++..++..+.
T Consensus 97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~ 174 (382)
T PRK11128 97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG 174 (382)
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 99999999999888888888777776 35577878888888889999999988876 9999998877655544444
Q ss_pred hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHh
Q 012803 206 LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (456)
Q Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (456)
.++.||+++ +++.++ ..++...++++++|+|.++......++......
T Consensus 175 ~~~~~~~~~----~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 222 (382)
T PRK11128 175 QLLRPTIMP----QGESRQ----------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHA 222 (382)
T ss_pred HHccCCCCC----cccccc----------------------------ccccccchHHHHHcChhHHHHHHHHHHHHHHhH
Confidence 444454321 000000 000112346778888888877776666555443
Q ss_pred ccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------
Q 012803 286 GGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------ 356 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 356 (456)
......+.|. .+.+.+. +.......++.++..++.+++.||+++|+.+..+.+..+++.+++.....
T Consensus 223 ~~~~~~~~~~----~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T PRK11128 223 AYYGFSAIYW----QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIV 298 (382)
T ss_pred hHHHHHHHHH----HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344444444 3344443 35555666788888889999999999999988888887776665543321
Q ss_pred HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012803 357 FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLV-SWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 426 (456)
..++.++......+....+..+. +++++++..+..+.. ..+|..++|.+.|.+.|..+...++..+++.
T Consensus 299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~ 368 (382)
T PRK11128 299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVA 368 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222222222234455566665 556678889988744 5678899999999999965545455444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=234.39 Aligned_cols=398 Identities=18% Similarity=0.175 Sum_probs=264.5
Q ss_pred chhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHH
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 111 (456)
.+.|-.....++..+.......+. +...+.++++++.+.++++|+.++..-...+..|+.+.+.||+|.|++.+.|.
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~---Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~ 118 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSF---GLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG 118 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchhee---hhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence 334444444444443333332333 46778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhhHHHHH-HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----
Q 012803 112 IVCIIGWVIIVFSKAAWWLDLG-RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---- 186 (456)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---- 186 (456)
++.+++.++.++++++|++++. -++.|+|.|+.+.....++..+|+ ++|+.+.|+..++.++|.++-|.+...+
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~ 197 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence 9999999999999999988776 578899999999999999998885 6699999999999999999888888776
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCC-ChhHHHh---cCCc-----HHHHHH-HHHHhCCCC-Cch---HHHHHHHHHHHH
Q 012803 187 NWRILALIGTIPCLVQLIGLCFIPE-SPRWLAK---TGKG-----IESEAA-LQRLRGADA-DIS---EEAAEIREYTET 252 (456)
Q Consensus 187 ~w~~~f~~~~~~~l~~~~~~~~~~~-~p~~~~~---~~~~-----~~~~~~-~~~~~~~~~-~~~---~~~~~~~~~~~~ 252 (456)
|||+.+++.+.+.+-.++....+++ .+..... +.+. +..... .++....+. ... .+....++..++
T Consensus 198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (509)
T KOG2504|consen 198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDK 277 (509)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcc
Confidence 9999999988877665555444433 2211000 0000 000000 000000000 000 001111111111
Q ss_pred Hh--hcChhh---HHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHH
Q 012803 253 LE--RLSEGG---ILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLG 324 (456)
Q Consensus 253 ~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 324 (456)
.. ..+... ..++++++.+..+.+...+.... +.....+++.+....+.+ ......+.++..++++++.
T Consensus 278 ~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g----~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~ 353 (509)
T KOG2504|consen 278 WRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG----FNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIIL 353 (509)
T ss_pred ccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhh
Confidence 11 111111 25778887777666666666665 344455555555555554 3488889999999999999
Q ss_pred HHHHhhcCCcc--hhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHH
Q 012803 325 VLLMDKSGRRP--LLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS 396 (456)
Q Consensus 325 g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 396 (456)
|+++|+...++ ...++.+..+++.+.+... ....++.+.............+.|+.+.++-..+.|+...+.
T Consensus 354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred hhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 99999988443 3444444444444344332 122244444444445555568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hh-hhhHHHHHHHHHHHHHHHHHhccc
Q 012803 397 WLGSWIISFTFNFLMK-WS-STGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 397 ~~g~~i~~~~~g~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.++..+||++.|++.| .+ +...++..+...+++ ...++..+
T Consensus 434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s-~~~~~~~~ 476 (509)
T KOG2504|consen 434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLS-AVLLLILR 476 (509)
T ss_pred HHHHHcCcccceeeeeccCCeeeehhhcChHHHHH-HHHHHHhH
Confidence 9999999999999999 44 334444444444444 43344333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=251.10 Aligned_cols=321 Identities=13% Similarity=0.030 Sum_probs=232.7
Q ss_pred ccccccCCCh-hhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHH---HHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Q 012803 64 GITNDLGLSV-AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGF---SDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (456)
Q Consensus 64 ~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (456)
.+.++.+.+. ...++..+++.+++.++++++|+++||+|||+++.. ..++..+..+.....+++++++++|+++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGI 120 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555443 457889999999999999999999999999997633 333333333344445899999999999999
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCChhH
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~ 215 (456)
+.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++ +|++.|+..++..++.++..+++|+++..
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA 200 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999999999999999999999999999999887 89999855556566666666677765420
Q ss_pred HHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhH
Q 012803 216 LAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYA 295 (456)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (456)
.++...+ . ... ++....++.+.+++.++...+..++.++.......+++.|.
T Consensus 201 --~~~~~~~--------------~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 252 (1140)
T PRK06814 201 --APDLKID--------------R----NII--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA 252 (1140)
T ss_pred --CCCCeec--------------c----chH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0000000 0 000 00112355667778888877777776666555556677777
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH---------------------
Q 012803 296 SSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--------------------- 354 (456)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------------------- 354 (456)
...++......+......+++.+++.++.++++|+..+++.+..+.++.+++.+.+.+.
T Consensus 253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 66555444455688888899999999999999988877766655555544444332221
Q ss_pred -----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 -----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....++.+++.....+...+++++..|++.+|+++|+.+++..++..+++.+.|.+.+
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111233333333445677888999999999999999999999999999999999986
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=219.88 Aligned_cols=356 Identities=18% Similarity=0.150 Sum_probs=233.3
Q ss_pred ccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 012803 54 AIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (456)
Q Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (456)
.....+..++.+.+|+| +.....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|+++++.++|...++++
T Consensus 59 ~~~~~a~~l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag 137 (599)
T PF06609_consen 59 VLVLPASILPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAG 137 (599)
T ss_pred HHhccHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHH
Confidence 34444567788999998 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
..+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||.|++..+...+.++..++.
T Consensus 138 ~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 138 MVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999876654 455689999999998877777665555555666666544 89999999988776655443222
Q ss_pred CCChhHHHhcCCc---HHHHHHHHHH------------------hC---CCCCchHHHHHHH---------HHHHHH-hh
Q 012803 210 PESPRWLAKTGKG---IESEAALQRL------------------RG---ADADISEEAAEIR---------EYTETL-ER 255 (456)
Q Consensus 210 ~~~p~~~~~~~~~---~~~~~~~~~~------------------~~---~~~~~~~~~~~~~---------~~~~~~-~~ 255 (456)
-.+|++...++++ .+..+.++.+ .+ ...+..+.....- -.-|.. ..
T Consensus 217 Y~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~ 296 (599)
T PF06609_consen 217 YFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAP 296 (599)
T ss_pred hCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccC
Confidence 2223322222221 1111222111 01 1112222111110 001111 12
Q ss_pred cChhhHHHHhhh-hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHhhc
Q 012803 256 LSEGGILELFQR-KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF---SGSIGMIAMVVIQIPMTLLGVLLMDKS 331 (456)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~ 331 (456)
+++.-..+++|+ |.+...+++.++....++......|.....++..... ..+......+++...+..+.+.+..++
T Consensus 297 ~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i 376 (599)
T PF06609_consen 297 KDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI 376 (599)
T ss_pred CCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc
Confidence 344455678877 4454444555555444443333334433333433332 234667778888888999999999988
Q ss_pred CCcch-hhhhhHHHHHHHHHHHHH--------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHH
Q 012803 332 GRRPL-LLVSAAGTCLGCLLAALS--------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 402 (456)
Q Consensus 332 g~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i 402 (456)
++-|. ++++..++.+++.++... ....++.+++..+........++-..|++.-|++.|+..+++.+|+.+
T Consensus 377 r~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI 456 (599)
T PF06609_consen 377 RHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI 456 (599)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH
Confidence 87544 455655555544444432 223344444444444445566667789999999999999999999999
Q ss_pred HHHHHHHHH
Q 012803 403 ISFTFNFLM 411 (456)
Q Consensus 403 ~~~~~g~l~ 411 (456)
|..+...+.
T Consensus 457 g~aIy~~I~ 465 (599)
T PF06609_consen 457 GYAIYNAIF 465 (599)
T ss_pred HHHHHHHHH
Confidence 999886654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=248.75 Aligned_cols=324 Identities=12% Similarity=0.015 Sum_probs=228.2
Q ss_pred cccccccCCCh--hhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH---HHhchhhHHHHHHHHH
Q 012803 63 SGITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFSKAAWWLDLGRLLV 137 (456)
Q Consensus 63 ~~i~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~ 137 (456)
+.+.++++.+. ...+++.+++.+++.++++++|+++||+|||++++.+.++..+..++. ...++++.++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33555566543 457999999999999999999999999999999999887766555544 3457899999999999
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-c------------chHHHHHhHH-HHHHHH
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-N------------WRILALIGTI-PCLVQL 203 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-~------------w~~~f~~~~~-~~l~~~ 203 (456)
|++.+...++..+++.|++|+++|++++++...+.++|.++|+.+++++ . |++.+.+..+ ..++.+
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL 193 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988765 1 3333333332 233344
Q ss_pred HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHH
Q 012803 204 IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQ 283 (456)
Q Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (456)
+..+.+||.|+....+.+.+ .. .. .+.....++.+++++.++...+..++.++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~--------------~~-~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (1146)
T PRK08633 194 IFAYRLPKVPAAAPEVFDKK--------------KY-LF-----------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFI 247 (1146)
T ss_pred HHHhcCcCCCCCCccccccc--------------cc-cc-----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44556677653211100000 00 00 000112345566777777666665555554
Q ss_pred HhccchhhHHhHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------H
Q 012803 284 QFGGVNGIAFYASSIFISAGF-SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------L 356 (456)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~ 356 (456)
.......++.|....++.... ..++......++.+++.++.+++.||+++++.+.++.++.+++.+++.... .
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLV 327 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444455566666554444443 455777888889999999999999999998888777777766665554431 1
Q ss_pred HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 357 FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
..++.+++.....+...+++.+..|++.||+++|+.+.+.++|..+++.+.+.+..
T Consensus 328 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 328 LFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333445667888899999999999999999999999888887776654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=219.74 Aligned_cols=369 Identities=12% Similarity=0.085 Sum_probs=236.3
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhchhhH-HHHHHHHHHh
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWW-LDLGRLLVGY 139 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~ 139 (456)
...+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++.+.++++++++.++++++... ++++|+++|+
T Consensus 38 ~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 38 AVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 335678899999999999999998899999999999999 99999999999999999999999877554 5589999999
Q ss_pred hhcccccccceeeeeccCCCC--chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCCh
Q 012803 140 GMGLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~p 213 (456)
|.|...|...+++.|.+|+++ |+++.+++..+.++|..++|.+++++ |||+.|++.++..++.++.+.+.++..
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~ 197 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMV 197 (489)
T ss_pred ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999999999999998874 47789999999999999998888776 999999986554444444443333221
Q ss_pred hHHHhc--CCcHHHHHHH-------------HHHhCCCCCchHHHHHH----H--HHHHHHhhcChhhHHHHhhhhhhhH
Q 012803 214 RWLAKT--GKGIESEAAL-------------QRLRGADADISEEAAEI----R--EYTETLERLSEGGILELFQRKYAHS 272 (456)
Q Consensus 214 ~~~~~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (456)
+....+ ++..+..... ....+ ........... . .....+.+. .+.+|+|.+..
T Consensus 198 ~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r~~~~ 271 (489)
T PRK10207 198 KDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH-NVEVANLVLIVLSIVVTIIFFREAFKL-----DKTGRNKMFVA 271 (489)
T ss_pred cccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHH
Confidence 100000 0000100000 00000 00000000000 0 000000111 13445554433
Q ss_pred HHH--HHHHHHHHHhccchhhHHhHHHHHHHc--CC--CchHHHHHHHHHHHHHHHHHHHHHhhcCCcch-------hhh
Q 012803 273 LIV--GVGLMVLQQFGGVNGIAFYASSIFISA--GF--SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPL-------LLV 339 (456)
Q Consensus 273 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~ 339 (456)
..+ ...+.+..+....+.++.|.+...+.. +. ..........+..++.+++.+++.||+++|+. +.+
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 222 233344444445566677766433221 21 22345555666677778888999999998863 666
Q ss_pred hhHHHHHHHHHHHHH----------------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHH
Q 012803 340 SAAGTCLGCLLAALS----------------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~ 403 (456)
+.++.+++++.+... ....++.+.......+...+.+.+..|++.+|.++|+.+...++|+.++
T Consensus 352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg 431 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766665433210 1111333444444567778888899999999999999999999999999
Q ss_pred HHHHHHHHh-----------hhhhhHHHHHHHHHHHHHHHHHhc
Q 012803 404 SFTFNFLMK-----------WSSTGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 404 ~~~~g~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
..+.+.... ......+..++...++++++.+..
T Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 432 GYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888865521 112344555555555555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=217.39 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=225.1
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH---Hh-----chhhH
Q 012803 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV---FS-----KAAWW 129 (456)
Q Consensus 59 ~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~-----~~~~~ 129 (456)
.|.+|. +.+++|.++.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++..... +. +....
T Consensus 22 ~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (396)
T TIGR00882 22 FPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVG 101 (396)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 566654 4567999999999999999999999999999999999999999887776655443321 11 22334
Q ss_pred HHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHh
Q 012803 130 LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 130 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~ 206 (456)
+++.|++.|++.+...+....+..|.. ++++...+......++|.+++|.+++.+ +||.+|++.+++.++..+..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 567788899988888887777666643 2334566777777788888888888766 99999999888877755444
Q ss_pred hc-cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHh
Q 012803 207 CF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (456)
Q Consensus 207 ~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (456)
+. .+|+|+.. +.++. .+ ++.++.+..+.++++|+|.++...+..........
T Consensus 180 ~~~~~~~~~~~----~~~~~-------~~----------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 232 (396)
T TIGR00882 180 MFAKPKAPSSA----TVANA-------LG----------------ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYD 232 (396)
T ss_pred HHhCCCCchhh----hhhcc-------cc----------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 44 34433210 00000 00 00011122345677788777665554444433333
Q ss_pred ccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--H----
Q 012803 286 GGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF--L---- 356 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~---- 356 (456)
......+.|.+...+..+.+ .+.......+...++.+..+++.||+++|+.+..+..+.++...+..... .
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~ 312 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVI 312 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 33345666666655433322 23556666677788889999999999999998888877777665544321 1
Q ss_pred HHHHHHHhcccccccceeeecccCCccchhhHhHH-HHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHH
Q 012803 357 FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL-VTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~ 433 (456)
...+.+............+..+..|++.++++.+. .+....+|++++|.+.|++.|. ++...+.+.+++.++.+++.
T Consensus 313 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 313 LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 11111111111112223355666777888887776 6788899999999999999994 55556666666655555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=219.32 Aligned_cols=346 Identities=17% Similarity=0.172 Sum_probs=228.7
Q ss_pred hhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-----CchH-HHHHHHHHHHHHHHHH
Q 012803 48 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRG-TMGFSDIVCIIGWVII 121 (456)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----G~r~-~~~~~~~~~~~~~~~~ 121 (456)
.+..+...+.....+|.+.++.|++.+++|++..+... .+..+++|+++||+ |||| ++..+.++.+++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 34556667777788888888999999999999777665 58899999999999 8875 7888888888888887
Q ss_pred HHh---chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHH
Q 012803 122 VFS---KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILAL 193 (456)
Q Consensus 122 ~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~ 193 (456)
++. ++++.+++..++.++..+...++..+++.|++|+++|+++.++...+.++|.++++.++..+ |||..|+
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 776 35777888888888888888999999999999999999999999999999999988766443 8999999
Q ss_pred HhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHH
Q 012803 194 IGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSL 273 (456)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (456)
+.++..++..+..+++||+++. +++.++ . +++....+++++|+|.++..
T Consensus 166 i~a~~~l~~~l~~~~~~e~~~~---~~~~~~-----------------~-----------~~~~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 166 LMAGLMLAGALTTLWAPEPEVP---ARPPRS-----------------L-----------GEAVVGPLRDFFSRRGAWAL 214 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCccc---ccccch-----------------h-----------HHHHHHHHHHHHhCcCHHHH
Confidence 9888777665555667775431 000000 0 00012235567788887776
Q ss_pred HHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHH-HHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHH
Q 012803 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAM-VVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 349 (456)
.....+............+.+ ..+..+.+.. ...... .++.+++.++.+++.||+++|+.+..+..+.++..+
T Consensus 215 l~~~~l~~~~~~~~~~~~~~~---l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 215 LLLIVLYKLGDAFAGSLSTTF---LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 665555443322211222222 2233455444 333222 345788999999999999998887766655544433
Q ss_pred HHH---HH--HHHHHH---------HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012803 350 LAA---LS--FLFQVY---------TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS 415 (456)
Q Consensus 350 ~~~---~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~ 415 (456)
.+. .. ....+. .+............++++..|.+ ..++.+....++..+++.+.|.+.|..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 292 GYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 221 11 001111 11111222344455666666644 4566666777888877789999999555
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 012803 416 TGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (456)
+..++..+.++.+.+++.
T Consensus 368 ~~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 368 WPGFYLMTVVIALPGLAL 385 (402)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 554444444444333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=219.51 Aligned_cols=363 Identities=17% Similarity=0.159 Sum_probs=260.7
Q ss_pred chhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHH
Q 012803 32 SATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSD 111 (456)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~ 111 (456)
+..+..|..-.+..++..+.. ..++.+..++.-|+...+++..+..+...+.++++|.++||++|||+++.+.
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~-------va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQT-------VALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 444556666666667766653 3344455666778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 112 IVCIIGWVIIVFS-----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 112 ~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
++.++..+..++. .+.+.+++.-++.|++.+...|+.++++.|..|+++...++++.+...++..++||.+++.+
T Consensus 83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 8887666555432 37888999999999999999999999999999999999999999999999999999999886
Q ss_pred ----cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHH
Q 012803 187 ----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGIL 262 (456)
Q Consensus 187 ----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (456)
|-.+.|.+.++..++.+......+++++ +++..+ ++..+.-+..++
T Consensus 163 va~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~---------------------------e~~~~~l~~G~r 212 (524)
T PF05977_consen 163 VAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPR---------------------------ERFFSALREGLR 212 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccch---------------------------hhhhhhHHHHHH
Confidence 7778888887766655544444433211 000000 000011122333
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhH
Q 012803 263 ELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAA 342 (456)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 342 (456)
-+.+++..+..+...++..+........+|.+....++......+++....+++.++|+++.+++.+|+++++.+..+.+
T Consensus 213 yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~ 292 (524)
T PF05977_consen 213 YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL 292 (524)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence 34445555555554444444433334556666666555555556688999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012803 343 GTCLGCLLAALSFLF------QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST 416 (456)
Q Consensus 343 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 416 (456)
..+++.+.+.+.... .++.+.+.........+..++..|++.||++++++++....+..+|..+.|.+.+..+.
T Consensus 293 ~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~ 372 (524)
T PF05977_consen 293 LFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV 372 (524)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 888777776654211 12223333333455567888999999999999999999999999999999999995444
Q ss_pred hHHHHHHHHHHHHHH
Q 012803 417 GTFFAFSAICSLTVL 431 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~ 431 (456)
...+..++++++.+.
T Consensus 373 ~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 373 RTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444443333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=235.63 Aligned_cols=293 Identities=16% Similarity=0.152 Sum_probs=210.3
Q ss_pred hhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc-
Q 012803 47 GSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK- 125 (456)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~- 125 (456)
..+......++.++.++.++++|+++.++.|++.+.+.++++++.++.|++.||+|||+++.++.++++++++++++.+
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 3444445557778899999999999999999999999999999999999999999999999999999999999998763
Q ss_pred --------------------------------------------------hhhHHHHHHHHHHhhhcccccccceeeeec
Q 012803 126 --------------------------------------------------AAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (456)
Q Consensus 126 --------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (456)
.+..++++|+++|+|.+...+...+++.|+
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~ 200 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF 200 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence 245678999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----c---------------------chHHHHHhHHHHHHHHHHhhcc
Q 012803 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----N---------------------WRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~---------------------w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
+|+++|+++++++..+..+|..+|+++++.+ + ||..|++.+++.++..+.++++
T Consensus 201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999887653 1 6677888887777765556666
Q ss_pred CCC-hhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 210 PES-PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 210 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
|++ |+... +.+.+..++ +.. ....+.. ... .....++.....+++++++.++...+..++.........
T Consensus 281 p~~lp~~~~-~~~~~~~~~--~~~-~~~~~~~--~~~----~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~ 350 (633)
T TIGR00805 281 PKALPKEGK-RVNVDVHET--EKL-EKSEDKS--RKK----NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI 350 (633)
T ss_pred ccccCCccc-ccchhhhhh--hcc-ccccccc--chh----hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 654 32100 000000000 000 0000000 000 000011123456778899998888888877777766666
Q ss_pred hhhHHhHHHHHHHcCCCchHHHHHHHH-HHHHHHHHHHHHHhhcCC--cchhhhhhHHHHHHHH
Q 012803 289 NGIAFYASSIFISAGFSGSIGMIAMVV-IQIPMTLLGVLLMDKSGR--RPLLLVSAAGTCLGCL 349 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~ 349 (456)
.++|.|+...++......+.......+ +.+++.+++|+++||++. |+.+..+.++..++.+
T Consensus 351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 777777766555544444555555454 567899999999999984 4555555555555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=211.24 Aligned_cols=334 Identities=13% Similarity=0.047 Sum_probs=251.9
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccc
Q 012803 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (456)
Q Consensus 66 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (456)
.++++-.++++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|+.++...++++++.++++.++++|.+||+|.++..
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 34566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeeccCCCC-chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcC
Q 012803 146 YVVPVYIAEITPKNL-RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTG 220 (456)
Q Consensus 146 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~ 220 (456)
.+..++++|.||+++ |++++|+...+.++|..+||+.|+.+ |.+.+|++.+++.++...+.+++-|+.+
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~------ 251 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE------ 251 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc------
Confidence 999999999998875 69999999999999999999999988 9999999999999997777666544321
Q ss_pred CcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHH
Q 012803 221 KGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI 300 (456)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (456)
.+++...+..+++++++++..+...................++.|..+.+.
T Consensus 252 -----------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 252 -----------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF 302 (464)
T ss_pred -----------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc
Confidence 000012244557788888888776666665555555566777777776666
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHH--HHHHHHH-HHH-----HHHHh----cccc
Q 012803 301 SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL--LAALSFL-FQV-----YTGSF----SLGM 368 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-----~~~~~----~~~~ 368 (456)
..+...++.+....+...++..+.|.+.||++..+.+.....+..++.. ...+... ..+ ..++. ....
T Consensus 303 ~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl 382 (464)
T KOG3764|consen 303 TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASL 382 (464)
T ss_pred CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666777888999999999999999999999954443333333333322 2222211 111 11111 1111
Q ss_pred cccceeeecccCCcc---chhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHh
Q 012803 369 GGIPWVIMSEVFPIN---MKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 369 ~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
.|... +..|....+ .-|...++......+|.++||.++|.+.+ .+..+...+.+...++.+-++.+
T Consensus 383 ~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 383 IPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred hhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222222223 67899999999999999999999999998 66666667777777766555444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=218.85 Aligned_cols=319 Identities=18% Similarity=0.110 Sum_probs=222.1
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc----cCch-HHHHHHHHHHHHHHHHHHHhch------hhHH
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRR-GTMGFSDIVCIIGWVIIVFSKA------AWWL 130 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~------~~~l 130 (456)
.+.+.+++|+++.+.|++.++..+..++..|+.|+++|| +||| +.++.+.+..+++.+++.+.++ ...+
T Consensus 23 ~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 102 (437)
T TIGR00792 23 LFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA 102 (437)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 345778899999999999999999999999999999998 6774 5677888888888888877654 4566
Q ss_pred HHHHHHHHhhhcccccccceeeeecc-CCCCchhHHHHHHHHHHHHHHHHHHHhc-----------cccchHHHHHhHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGA-----------FLNWRILALIGTIP 198 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~-----------~l~w~~~f~~~~~~ 198 (456)
++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.. ..+||+.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 77888899988887778788888887 4688999999988888887665443321 22799999988888
Q ss_pred HHHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++..+. .+..+|+++. .+.++ +++.+....+++++++|.++......
T Consensus 183 ~~~~~~~~~~~~~e~~~~----~~~~~---------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (437)
T TIGR00792 183 GVVSLIICFFGTKERYSE----IPKNI---------------------------EKKLSLKQIFKALFKNDQLLILCLAY 231 (437)
T ss_pred HHHHHHHHHcCCEecCCC----CCccc---------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence 7765444 4566765410 00000 00001122345667788777766666
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-- 355 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 355 (456)
++............++|.....+ .....+.......++.+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSN 310 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchh
Confidence 65555444333334444433322 111223455666788899999999999999999998888877777666554321
Q ss_pred --H---HHHHHHHhcccccccceeeecccCC-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 356 --L---FQVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 356 --~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
. ...+.++......+..+++.+|..+ ++.+|.+.|+.+....+|..+++.+.|.+.+
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 311 LPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122222223334556677777654 4567999999999999999999999999987
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-25 Score=210.59 Aligned_cols=381 Identities=13% Similarity=0.066 Sum_probs=243.5
Q ss_pred eccccccc-ccc--cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 012803 58 SSPAQSGI-TND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLG 133 (456)
Q Consensus 58 ~~~~~~~i-~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (456)
..+.+|.+ .++ +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++
T Consensus 29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 108 (475)
T TIGR00924 29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYG 108 (475)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 35555544 445 89999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCC---chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~ 206 (456)
|++.|+|.|...+...++++|++|+++ |+++.+++..+.++|..+||.+++.+ |||+.|++.++..+++.+.+
T Consensus 109 ~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 109 LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 88899999999999999999998876 89999999876655554444
Q ss_pred hccCCChhHHH-hcCC-cHHHHHHHHH---------------HhCCCCCchHHHHHH-----HHHHHHHhhcChhhHHHH
Q 012803 207 CFIPESPRWLA-KTGK-GIESEAALQR---------------LRGADADISEEAAEI-----REYTETLERLSEGGILEL 264 (456)
Q Consensus 207 ~~~~~~p~~~~-~~~~-~~~~~~~~~~---------------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 264 (456)
++.++..+... ++++ .++..+..++ ....+.......... .........++.....+-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (475)
T TIGR00924 189 FAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVAR 268 (475)
T ss_pred HHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 33332110000 0000 0000000000 000000000000000 000000000000011111
Q ss_pred hhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc--C--CCchHHHHHHHHHHHHHHHHHHHHHhhcCC-----cc
Q 012803 265 FQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA--G--FSGSIGMIAMVVIQIPMTLLGVLLMDKSGR-----RP 335 (456)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~ 335 (456)
.|......+++...+.+..+....+.++.+..+..+.. + ...+.......+..++..++..++..|.+| +.
T Consensus 269 ~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~ 348 (475)
T TIGR00924 269 NKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTT 348 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 12222333444445555555555565666665543322 1 224577777777777777665544333333 33
Q ss_pred hh--hhhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHH
Q 012803 336 LL--LVSAAGTCLGCLLAALS---------------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL 398 (456)
Q Consensus 336 ~~--~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 398 (456)
.. .++.++.++++..+.+. ....++.+.......|...++..+..|++.||+++|+......+
T Consensus 349 ~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 349 PLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33 56777777777665531 11124444555556788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 399 GSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 399 g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
|..+++.+.....+. +....+...+..+++.+++.++..|
T Consensus 429 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 429 GSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877664 3334445555555555555444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=215.61 Aligned_cols=306 Identities=15% Similarity=0.086 Sum_probs=212.9
Q ss_pred cceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-----CchHH-HHHHHHHHHHHHHHHHHh---c
Q 012803 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGT-MGFSDIVCIIGWVIIVFS---K 125 (456)
Q Consensus 55 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~---~ 125 (456)
.+..++.+|.+.+|+|+|.++.|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3445678888999999999999999766 555555 89999999998 89887 467788888877777777 4
Q ss_pred hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c--------chHHHH
Q 012803 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N--------WRILAL 193 (456)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~--------w~~~f~ 193 (456)
+.+.+....++.+++.+...++..+++.|++|+++|+++.++...+.++|.++++.++..+ + ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 6666777788888888888899999999999999999999999999999999999888655 6 999999
Q ss_pred HhHHHHHHHHHHhhc-cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhh---
Q 012803 194 IGTIPCLVQLIGLCF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKY--- 269 (456)
Q Consensus 194 ~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 269 (456)
+.++..++..+..++ .||+++. ++. + +++ +++.+..++++++++.
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~----~~~-~---------------~~~-----------~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED----ASV-P---------------KPL-----------TQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc----ccc-c---------------hhH-----------HHHHHHHHHHHHHhcCchH
Confidence 988877776555443 4554210 000 0 000 0001123455566654
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhhhhHHHH
Q 012803 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMV-VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345 (456)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 345 (456)
.+......++............+.|.. +.+.+.. ......+ +..+++.++++++.||+|+|+.+..+.++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLL----DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444444444444443333444555543 3455444 3333333 5677899999999999999998888877776
Q ss_pred HHHHHHHHHH------------HHH-----HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHH
Q 012803 346 LGCLLAALSF------------LFQ-----VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW 397 (456)
Q Consensus 346 ~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 397 (456)
++..++.+.. ... ++.++......+...++.+|.+|+++||+..|+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6655443320 011 112233334467778999999999999999999987764
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=188.43 Aligned_cols=333 Identities=20% Similarity=0.213 Sum_probs=260.5
Q ss_pred HHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHH
Q 012803 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (456)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 117 (456)
++....+.+..+-.+...+.++|+++++++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444555666888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHH
Q 012803 118 WVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILA 192 (456)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f 192 (456)
.++-... +.+.++.+-.+.|.|.+......+.++.+.||++ -+..+++|....++|..+++.+.-.+ +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 7788999999999999999999999999999755 69999999999999877776555433 799999
Q ss_pred HHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhH
Q 012803 193 LIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS 272 (456)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (456)
..-+.+++++++.|+.-...++ . ...+.+..+...++|++.-|.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~-~-----------------------------------~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ-A-----------------------------------ASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc-c-----------------------------------cccccccccccccccCchhHH
Confidence 9999998888777754321110 0 001112223345778888888
Q ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcC-CcchhhhhhHHHHHHH
Q 012803 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSG-RRPLLLVSAAGTCLGC 348 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~ 348 (456)
..+.+.+..+. ++....|+|.++.+.|.++. .......+..++.++....+.+|.. +|+.......++.++.
T Consensus 213 vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 88877777765 45566777777888887654 7778888899999999999999764 5666666667777777
Q ss_pred HHHHHH-----HHHHHHHHHhcccccccceeeecccCC-ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 349 LLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFP-INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 349 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+.+.+. ....++.+....+.++...+.+.+..+ +++.+.-.|+.+.++++-.++||.+.|++.|
T Consensus 289 ~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 289 VGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 766543 122345555555667776666665544 5667889999999999999999999999999
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=204.01 Aligned_cols=350 Identities=11% Similarity=0.100 Sum_probs=213.5
Q ss_pred hhccccceecccccccccccCCChhh-HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhh
Q 012803 50 VFGSAIGYSSPAQSGITNDLGLSVAE-YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAW 128 (456)
Q Consensus 50 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~ 128 (456)
-.+.+.+. ..|.+.+|+|+|++| .|.+.+.+..+|++++++.|+++||+|.|+++.++.+.+++.+++.+++++++
T Consensus 40 e~R~n~s~---a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~ 116 (511)
T TIGR00806 40 QFRPGESF---ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW 116 (511)
T ss_pred HhhchHHH---HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556644 455699999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHh---HHHHHHH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIG---TIPCLVQ 202 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~---~~~~l~~ 202 (456)
.+.+.|++.|+++|... +...++..|+|+++|+++.++..++..+|.++++++++.+ |||+.+.+. .....++
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999998777 898766543 3333445
Q ss_pred HHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHH-HHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHH
Q 012803 203 LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAE-IREYTETLERLSEGGILELFQRKYAHSLIVGVGLMV 281 (456)
Q Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (456)
.+..+++|..++.+--+++.+.......+.+...++...+... .+......-+.-...+++..+++......+-..+..
T Consensus 196 ~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~ 275 (511)
T TIGR00806 196 VFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS 275 (511)
T ss_pred HHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence 5666888866654332222111000000001110010000000 000000000011122333444443332222222222
Q ss_pred HHHhccchhhHHhHHHHHHHcCC----CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhh--HHHHHHHHHHHHH-
Q 012803 282 LQQFGGVNGIAFYASSIFISAGF----SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSA--AGTCLGCLLAALS- 354 (456)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~~~~~~~~~~- 354 (456)
+ ++..+..|.+.+.+...- -.+..-.+..+.+.+.++..|++-.+..+..-+.++. .+.+..++++...
T Consensus 276 ~----g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~ 351 (511)
T TIGR00806 276 A----GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSH 351 (511)
T ss_pred h----HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhccc
Confidence 2 344555666665544311 2335555566667777788888755443322222222 2222222222222
Q ss_pred -----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHH
Q 012803 355 -----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 407 (456)
Q Consensus 355 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 407 (456)
+...++.........++...-+++....+.-|...|+.+++.-+-..+-..+.
T Consensus 352 ~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 352 DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 11111111111111233333444555667779999998888777766655444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=202.89 Aligned_cols=374 Identities=15% Similarity=0.081 Sum_probs=246.2
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh------chhhHHHHH
Q 012803 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS------KAAWWLDLG 133 (456)
Q Consensus 60 ~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~ 133 (456)
...|.+++++|+|..+.+++.+.. .....++++.|++.||+|||+++.++.+++++++++++++ ++++.+++.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~ 126 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY 126 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 445569999999999999998874 4556778899999999999999999999999999999997 689999999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHH-HHHHhccc--cchHHHHHhHHHHHHHH-HHhhcc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSM-TYLIGAFL--NWRILALIGTIPCLVQL-IGLCFI 209 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l--~w~~~f~~~~~~~l~~~-~~~~~~ 209 (456)
|++.|+|.+...+.....+.+||| ++||++.++...+.++|.++ +++...++ +|+..|++.+++.++.. +...++
T Consensus 127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhe
Confidence 999999999888888889999997 67899999999999999975 55555555 89988888877766644 444444
Q ss_pred CCC--hhHHHhcCCcHHHHHHHHHH-------------------------------------------------------
Q 012803 210 PES--PRWLAKTGKGIESEAALQRL------------------------------------------------------- 232 (456)
Q Consensus 210 ~~~--p~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 232 (456)
++. |++..++++.++.++..++.
T Consensus 206 r~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~ 285 (591)
T PTZ00207 206 RLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIV 285 (591)
T ss_pred eCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 433 33332222222222210000
Q ss_pred ---------------hCCCC--CchHHHHHH-H---H--HHHH-----H-h---hcChhhHHHHhhhhhhhHHHHHHHHH
Q 012803 233 ---------------RGADA--DISEEAAEI-R---E--YTET-----L-E---RLSEGGILELFQRKYAHSLIVGVGLM 280 (456)
Q Consensus 233 ---------------~~~~~--~~~~~~~~~-~---~--~~~~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (456)
+..++ +.+.+..+. + + ..+. + + +....++++.+++.++|.+++..++.
T Consensus 286 lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg 365 (591)
T PTZ00207 286 LTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCC 365 (591)
T ss_pred HHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHh
Confidence 00000 000000000 0 0 0000 0 0 11123778888889999998888887
Q ss_pred HHHHhccchhhHHhHHHHHHHcCC--Cc--h-HHHHHHHHHHHHHHHHHHHHHhhcCCcc--------h-hhhhhHHHHH
Q 012803 281 VLQQFGGVNGIAFYASSIFISAGF--SG--S-IGMIAMVVIQIPMTLLGVLLMDKSGRRP--------L-LLVSAAGTCL 346 (456)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~-~~~~~~~~~~ 346 (456)
........+.+.......- +. +. . ....+.++++.+|++..|.++....+|+ . +.+..+ +.+
T Consensus 366 ~g~gl~~~~N~~qI~~sl~---g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~ 441 (591)
T PTZ00207 366 VGAHFVIIFNARFIYTALA---GEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CII 441 (591)
T ss_pred hCchheeeecHHHHHHHhc---CCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHH
Confidence 7765555444444333321 33 12 2 2678889999999999998773222221 1 222222 444
Q ss_pred HHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHH-HHHHHHHHhhh-----
Q 012803 347 GCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII-SFTFNFLMKWS----- 414 (456)
Q Consensus 347 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~-~~~~g~l~~~~----- 414 (456)
+.+++... +...++.+++.+...++....++|++. ++-|+-.-+.....-+|..+- -.++|.++|..
T Consensus 442 ~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~ 520 (591)
T PTZ00207 442 TMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLG 520 (591)
T ss_pred HHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44444332 223355556656667888889999999 888888888887777877776 56788888721
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 415 ---------STGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 415 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
...++++.++++.++.++...+..++
T Consensus 521 ~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 521 QDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred CCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 13467777787777777655544343
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-26 Score=197.27 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=196.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
..++.+.+..-.|.+.+.|++...+.++.+|.++||+|||+++++|++..++..++.+.++|+..+++.|++.|+..| .
T Consensus 59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-n 137 (451)
T KOG2615|consen 59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-N 137 (451)
T ss_pred hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-c
Confidence 334444455668999999999999999999999999999999999999999999999999999777777999999987 5
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccccc------hHHHHHhH----HHHHH-HHHHhhccCCCh
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNW------RILALIGT----IPCLV-QLIGLCFIPESP 213 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~w------~~~f~~~~----~~~l~-~~~~~~~~~~~p 213 (456)
.....++++|.+++|+|++.++..++++++|.++||.+|+++.- +.+|.... ++... .....+++||+-
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 56788999999999999999999999999999999999998721 22233322 12222 223346788873
Q ss_pred hHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhH---HHHHHHHHHHHHhccchh
Q 012803 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHS---LIVGVGLMVLQQFGGVNG 290 (456)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 290 (456)
.. +++.+++. +..+..++. ++..+.....--..+|++.... ..-...+..+.+...+..
T Consensus 218 ~~---rk~~~~~~-----------~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~ 279 (451)
T KOG2615|consen 218 PL---RKRNDEHS-----------TLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSG 279 (451)
T ss_pred cc---hhhccccc-----------chhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 21 11110000 000000000 0000000000011122211111 111112222222112222
Q ss_pred hHHhHHHHH-HHcCC---CchHHHHHHHHHHHHHHHHHHHHHhhcC--CcchhhhhhHHHHHHHHHHHHH------HHHH
Q 012803 291 IAFYASSIF-ISAGF---SGSIGMIAMVVIQIPMTLLGVLLMDKSG--RRPLLLVSAAGTCLGCLLAALS------FLFQ 358 (456)
Q Consensus 291 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~------~~~~ 358 (456)
...+...+. +..++ +.+.+....++.+.+......+..||.+ .+..+..+..++.-.++++... ....
T Consensus 280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s 359 (451)
T KOG2615|consen 280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGS 359 (451)
T ss_pred HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHH
Confidence 222222221 22333 3344444455555544444444445443 2223333333333333333221 1111
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.+-.+......+.....+....|+++||+++|+....+.++.++||.+.|.+..
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 222233333345566778889999999999999999999999999999999887
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=198.08 Aligned_cols=348 Identities=14% Similarity=0.013 Sum_probs=224.0
Q ss_pred HHHhhhhhhccccceecccccccccccCCChhhHHHH--HHHHHHHHHHHHHHHh-hhhcccCchHHHHHHHHHH-HHHH
Q 012803 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLF--GSILTIGAMIGAIMSG-KIADYIGRRGTMGFSDIVC-IIGW 118 (456)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~G-~l~dr~G~r~~~~~~~~~~-~~~~ 118 (456)
.+....+..|...+...|.+|.+.+|.|.|.+++|+. .+.+.+...+.+|+.+ +..||+||||..++...+. ++..
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 3444456778888888999999999999999999997 4677888888888885 4799999999975555332 2222
Q ss_pred HHHH-H--hch-hhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchH
Q 012803 119 VIIV-F--SKA-AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRI 190 (456)
Q Consensus 119 ~~~~-~--~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~ 190 (456)
...+ + ..+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++++...+.+ |||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~ 164 (390)
T TIGR02718 85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP 164 (390)
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 2222 1 222 334455556666777777788888888888888888888888888889999988655443 9999
Q ss_pred HHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhh
Q 012803 191 LALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYA 270 (456)
Q Consensus 191 ~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (456)
.|++.+++.++..+..++++|+++. +++.+ +.+..+.++.+|+|..
T Consensus 165 ~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~~~~~~~~~l~~~~~ 210 (390)
T TIGR02718 165 AFLLVACVPLASLVCVLWLKDRAVA---SPEAP-------------------------------LARRASLFRFFRRPLA 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcC---ccccc-------------------------------hhhHHHHHHHHcCcCH
Confidence 9999988877755555555443210 00000 0011234567777777
Q ss_pred hHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHH-HHHHHHHHHHHHHHhhcCCcchhhhhhHHHHH
Q 012803 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMV-VIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCL 346 (456)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 346 (456)
+......++........+...+. +..+.+.+.. ......+ ...+++.++.|++.||+|+|+.+..+..+.++
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~----~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKL----YLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH----HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 76666555555544433443333 3344566554 3333333 35667788999999999999988776655533
Q ss_pred HHHHHHH-HH-------HH-HH--HHH-HhcccccccceeeecccCCc-cchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 347 GCLLAAL-SF-------LF-QV--YTG-SFSLGMGGIPWVIMSEVFPI-NMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 347 ~~~~~~~-~~-------~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
..+.... .. .. .. ... +......+...+...+..++ +.+++..++.+...++|..++|.+.|.+.|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 287 LALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 00 00 00 111 11122234445555555555 7899999999999999999999999999995
Q ss_pred hhhhHHHHHHHHHHH
Q 012803 414 SSTGTFFAFSAICSL 428 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (456)
.++...+..+..+.+
T Consensus 367 ~G~~~~f~~~~~~~l 381 (390)
T TIGR02718 367 FGYAGGFLSGTVLAV 381 (390)
T ss_pred HccHHHHHHHHHHHH
Confidence 554344433333333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=199.19 Aligned_cols=340 Identities=14% Similarity=0.086 Sum_probs=206.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHhhh
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGM 141 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~ 141 (456)
.+.+++|++.++.+++.+.+........+++|+++|| +|||+++..+.++.+++..++++++ +.+.++++|+++|++.
T Consensus 47 yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 47 YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 4678999999999999888887777777899999999 5999999999999999999998874 5667778899999999
Q ss_pred cccccccceeeeeccCCCC--chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh----hccCC
Q 012803 142 GLLSYVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL----CFIPE 211 (456)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~----~~~~~ 211 (456)
|...+...+++.|++|+++ |..+.++++.+.++|..++|.+++++ |||+.|++.++..+++.+.+ ..++|
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 9999998899999998654 45678888999999999999998877 89999999876555443322 22333
Q ss_pred ChhHHHhcCCcHHHHHH-----------HHHHhCCCCCchHHHHHHH---HHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 212 SPRWLAKTGKGIESEAA-----------LQRLRGADADISEEAAEIR---EYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 212 ~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++. .++++.+..... .......+.+......... ......+... ...+.-++|.... +..
T Consensus 207 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~ 281 (500)
T PRK09584 207 YGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVA--FIL 281 (500)
T ss_pred CCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHH--HHH
Confidence 2110 000001100000 0000000000000000000 0000000000 0001111121111 111
Q ss_pred HHHHHHHhccchhhHHhHHHHHHH------cCC--CchHHHHHHHHHHHHHHHHHHHHHhh----cCCcchhhhhhHHHH
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFIS------AGF--SGSIGMIAMVVIQIPMTLLGVLLMDK----SGRRPLLLVSAAGTC 345 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~~~~ 345 (456)
++....++..+...+.++...... .+. ..+.......+..++..++..++-+| .+..+.+.++.++.+
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~ 361 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHH
Confidence 122222222333334443332111 122 24466667776666666666444444 444466777888888
Q ss_pred HHHHHHHHHH---------------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHH
Q 012803 346 LGCLLAALSF---------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFN 408 (456)
Q Consensus 346 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g 408 (456)
++++.+.... ...++.+.......|...+++.+..|++.||+++|+......+|..++..+.+
T Consensus 362 l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 362 GAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877754431 11234455555567888899999999999999999887777777777766664
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=190.75 Aligned_cols=364 Identities=15% Similarity=0.094 Sum_probs=236.9
Q ss_pred cceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhc----ccCchHHHHHH-HHHHHHHHHHHHHhchhh-
Q 012803 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGTMGFS-DIVCIIGWVIIVFSKAAW- 128 (456)
Q Consensus 55 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~G~r~~~~~~-~~~~~~~~~~~~~~~~~~- 128 (456)
.+...+.++.+.+++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++.+ .+...++.++.+++++++
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 333455555677899999999999999999999999999999999 59999998774 666667767777776643
Q ss_pred ----------------HHHHHHHHHHhhhcccccccceeeeeccCCCCc--hhHHHHHHHHHHHHHHHHHHHhccc----
Q 012803 129 ----------------WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSMTYLIGAFL---- 186 (456)
Q Consensus 129 ----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l---- 186 (456)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~ 179 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK 179 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 223333344457777778888999999998865 6799999999999999999888653
Q ss_pred ---------------cchHHHHHhHHHHHHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 012803 187 ---------------NWRILALIGTIPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYT 250 (456)
Q Consensus 187 ---------------~w~~~f~~~~~~~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (456)
+.|+.|++.++..++..+. .+.++|.|....++.+.++ .++ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-------~~~-~-------------- 237 (477)
T TIGR01301 180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-------AAP-P-------------- 237 (477)
T ss_pred hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-------ccc-c--------------
Confidence 4577888888777765544 4667886521100000000 000 0
Q ss_pred HHHhhcChhhHHHHhh-----hhhhhHHHHHHHHHHHHHhccchhhHHhHHH-HHHHcC-----CCc-----hHHHHHHH
Q 012803 251 ETLERLSEGGILELFQ-----RKYAHSLIVGVGLMVLQQFGGVNGIAFYASS-IFISAG-----FSG-----SIGMIAMV 314 (456)
Q Consensus 251 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~-----~~~~~~~~ 314 (456)
++......++++++ .+..+.+.+..++.++..+....+.+.|..+ +++... ++. .+......
T Consensus 238 --~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s 315 (477)
T TIGR01301 238 --SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNS 315 (477)
T ss_pred --cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 00000111222322 2556677777777777655544444444432 222111 111 14555666
Q ss_pred HHHHHHHHHHHHHHhhcCC-cchhhhhhHHHHHHHHHHHHHHH----------------------HH-----HHHHHhcc
Q 012803 315 VIQIPMTLLGVLLMDKSGR-RPLLLVSAAGTCLGCLLAALSFL----------------------FQ-----VYTGSFSL 366 (456)
Q Consensus 315 ~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~----------------------~~-----~~~~~~~~ 366 (456)
+...+.+++..++.+|+|+ |+....+.++.++++....+... .. ...|+...
T Consensus 316 ~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A 395 (477)
T TIGR01301 316 VVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA 395 (477)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH
Confidence 6666777888899999985 66667777777777766653221 11 12222223
Q ss_pred cccccceeeecccCCc--cchhhHhHHHHHHHHHHHHHHHHHHHHHHh--h-hhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 367 GMGGIPWVIMSEVFPI--NMKGSAGSLVTLVSWLGSWIISFTFNFLMK--W-SSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 367 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
....+.++++++..|+ +..|..+|+.|.+..+.+.+.....|.+.+ . +....+.+-++..++.+++.++.+|+.+
T Consensus 396 ~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 396 ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3356667888888884 566999999999999999999998888665 2 2233344445555566666777777665
Q ss_pred C
Q 012803 442 G 442 (456)
Q Consensus 442 ~ 442 (456)
.
T Consensus 476 ~ 476 (477)
T TIGR01301 476 V 476 (477)
T ss_pred C
Confidence 3
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=181.69 Aligned_cols=353 Identities=16% Similarity=0.113 Sum_probs=237.6
Q ss_pred CchhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHH
Q 012803 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGF 109 (456)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~ 109 (456)
+....++......+|+..|...+++...+....+...|.+++.++..++.+.|.....+.+.++|++.|| +|-|..-++
T Consensus 36 PS~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii 115 (459)
T KOG4686|consen 36 PSALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII 115 (459)
T ss_pred chhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence 3445566777778888888887888877777888889999999999999999999999999999999997 788877766
Q ss_pred HHHHHHHHHHHHH---HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 110 SDIVCIIGWVIIV---FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 110 ~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
-+....++.++++ ..+.+|.+.++|++.|+|.-....+.+++...||..|+.+.++|+.....-+|..+-..+..++
T Consensus 116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 6666677777765 4689999999999999998888888899999999999999999999988888866543333332
Q ss_pred ----------------cchHHHHH-hHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 012803 187 ----------------NWRILALI-GTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY 249 (456)
Q Consensus 187 ----------------~w~~~f~~-~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
|-...+-. .....+++....-+. ++++++...+-++.-
T Consensus 196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~------------D~rAerilh~e~g~~------------- 250 (459)
T KOG4686|consen 196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS------------DDRAERILHLEEGFL------------- 250 (459)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHhhhcCcc-------------
Confidence 10000000 011111111111111 111111111110000
Q ss_pred HHHHhhcChhhHHHHh-hhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 012803 250 TETLERLSEGGILELF-QRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLM 328 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 328 (456)
.+.....+.. -.+.+|.+.+.+.++....+-....-+.+.+..++.+..+++.+....-....+.+++.|.++
T Consensus 251 ------Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~ 324 (459)
T KOG4686|consen 251 ------GEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAIS 324 (459)
T ss_pred ------cCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhH
Confidence 0000001110 135667777777777666555556666666666666666666666666666777788899999
Q ss_pred hhcCCcchhhhhhHHHHH-HHHHHHHH----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHH
Q 012803 329 DKSGRRPLLLVSAAGTCL-GCLLAALS----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWII 403 (456)
Q Consensus 329 d~~g~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~ 403 (456)
||.|++...+.+..+..+ +-..+.+. +....+.+..........|..++.+.|+++.|++.|.++.+.++|-++.
T Consensus 325 Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i 404 (459)
T KOG4686|consen 325 DKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI 404 (459)
T ss_pred hhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence 999998776655444333 22333332 1222333333333344567788889999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 012803 404 SFTFNFLMKWS 414 (456)
Q Consensus 404 ~~~~g~l~~~~ 414 (456)
|.+.|.+.|..
T Consensus 405 ~Iiag~i~d~~ 415 (459)
T KOG4686|consen 405 PIIAGFIADGD 415 (459)
T ss_pred hhhhheeecCC
Confidence 99999999933
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=174.12 Aligned_cols=321 Identities=17% Similarity=0.205 Sum_probs=220.7
Q ss_pred ecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccC-chHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 58 SSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
..|.+|..-++.|.|.+|+|.+.+...+...++++++|.++||++ +||++.+..++.++........++++.+++.-++
T Consensus 21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l 100 (400)
T PF03825_consen 21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLL 100 (400)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466777788889999999999999999999999999999999986 5788888888888877777888899988888888
Q ss_pred HHhhhcccccccceeeeeccCCCCc--hhHHHHHHHHHHHHHHH-HHHHhcccc---chHHHHHhHHHHHHHHHHhhccC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLR--GGFTTVHQLMICIGVSM-TYLIGAFLN---WRILALIGTIPCLVQLIGLCFIP 210 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~-~~~l~~~l~---w~~~f~~~~~~~l~~~~~~~~~~ 210 (456)
..+......|...++..+...++++ |+.-.+-+.++.++... +..+.+..+ ..+.+++.+...++.....+.+|
T Consensus 101 ~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp 180 (400)
T PF03825_consen 101 FSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLP 180 (400)
T ss_pred HHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 8888777778777777776653322 44444444444444322 223333332 23456666665555555556678
Q ss_pred CChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchh
Q 012803 211 ESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNG 290 (456)
Q Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (456)
+.|+....++ +.++....+..+++|+|++...++..++........+..
T Consensus 181 ~~~~~~~~~~-------------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f 229 (400)
T PF03825_consen 181 KTPPKRSAKE-------------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTF 229 (400)
T ss_pred CCccccccCC-------------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7762100000 001111223356888888877777766666654444444
Q ss_pred hHHhHHHHHHHcC-C---CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH----HH---HHH
Q 012803 291 IAFYASSIFISAG-F---SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS----FL---FQV 359 (456)
Q Consensus 291 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~ 359 (456)
.+.| +++.+ . ..+.......+..++.-...+++.+|+|.++.+.++.+..++=..++... .. ...
T Consensus 230 ~~~y----l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~ 305 (400)
T PF03825_consen 230 FSIY----LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQL 305 (400)
T ss_pred HHHH----HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4444 44444 2 23355566777888998999999999999999999988888777666554 11 111
Q ss_pred H----HHHhcccccccceeeecccCCccchhhHhHHHHHHH-HHHHHHHHHHHHHHHhh
Q 012803 360 Y----TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS-WLGSWIISFTFNFLMKW 413 (456)
Q Consensus 360 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~i~~~~~g~l~~~ 413 (456)
+ -+............++.+..|++.|+++.++++... .+|..+|..+.|++.|.
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 222222334566788999999999999999998875 59999999999999993
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=186.97 Aligned_cols=316 Identities=12% Similarity=0.079 Sum_probs=206.4
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc----cCc-hHHHHHHHHHHHHHHHHHHHhch------hhHH
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWL 130 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~G~-r~~~~~~~~~~~~~~~~~~~~~~------~~~l 130 (456)
...+.+++|+++.++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..++...+....++ ++.+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 345778899999999999999999999999999999998 777 56666787777777766555543 4556
Q ss_pred HHHHHHHHhhhcccccccceeeeecc-CCCCchhHHHHHHHHHHHHHHHHHHHh----ccc-------cchHHHHHhHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIG----AFL-------NWRILALIGTIP 198 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~----~~l-------~w~~~f~~~~~~ 198 (456)
++..++.+.+......+-.++.+|+. ++++|++..++...+..+|..+++.+. ..+ +|+..+.+.+++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 66667777777777777778999988 457799888888877777766665432 211 678777777776
Q ss_pred HHHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++..+. ++..+|.++. ++ +++.+.....+++++++.++......
T Consensus 193 ~~v~~~~~~~~~~e~~~~----~~------------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~ 238 (444)
T PRK09669 193 GVVLFFCCFFMTKERYTP----EV------------------------------DNSSSVWKDLKLLLGNSQWRIMFIFN 238 (444)
T ss_pred HHHHHHHHhCCeEEecCC----CC------------------------------cCCCCHHHHHHHHhCCchHHHHHHHH
Confidence 6554433 3444543210 00 00011223456667788877766655
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH---
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--- 354 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--- 354 (456)
++.............+|.....+.. ...........+..+++.++.+++.||+|+|+....+..+.+++...+...
T Consensus 239 ~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~ 317 (444)
T PRK09669 239 VVLLTAVVTRGGATLYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPS 317 (444)
T ss_pred HHHHHHHHHHhhhhheeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5444433222233333333332211 111234445556777888899999999999998887766554433222211
Q ss_pred -----HHHHHHHHHhcccccccceeeecccCC-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 -----FLFQVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....++.+.......+..+++.+|..+ .+..|...|..+....+|.++++.+.|.+.+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123344444445677788887765 2345778899999999999999999999988
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=184.90 Aligned_cols=338 Identities=15% Similarity=0.039 Sum_probs=215.8
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccC-----chHHHHHHHHHHH-HHHHHHHHhchhhHH-H
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTMGFSDIVCI-IGWVIIVFSKAAWWL-D 131 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----~r~~~~~~~~~~~-~~~~~~~~~~~~~~l-~ 131 (456)
.+..|.+.+++|++.++++...+...+...+-.+ +|.++||++ ||+.++++.++.+ +.....+..++.... .
T Consensus 46 ~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~ 124 (468)
T TIGR00788 46 LPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAA 124 (468)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 4555668889999999999999999999998655 999999998 7888888877763 333333333554444 4
Q ss_pred HHHHHHHhhhcccccccceeeeeccCCCCchhH---HHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH
Q 012803 132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGF---TTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~ 204 (456)
+.+++.+++.+...++..++..|..+ +++... .+......++|.++++.+++.+ +||..|++.+.+.++..+
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 48899999999999999999999998 444332 3333333446777777777665 899999998888777666
Q ss_pred HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 012803 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (456)
Q Consensus 205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (456)
..++++|+++....+.+.++ . .... ..........++.....++.+++|..+......++.+...
T Consensus 204 ~~~~~~E~~~~~~~~~~~~~-~-----------~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~ 268 (468)
T TIGR00788 204 VSNLSKERRAFVRPRIGTYL-E-----------MNMA---LLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL 268 (468)
T ss_pred HHHhcccccccccccccccc-h-----------hhhh---hhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc
Confidence 66777886311000000000 0 0000 0000000000111223444566677666555444411111
Q ss_pred hccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH----------
Q 012803 285 FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS---------- 354 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 354 (456)
........++.+..++......+......+++.+++..+.+++.+|++.|+.+.++.++.+++.......
T Consensus 269 ~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi 348 (468)
T TIGR00788 269 PGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI 348 (468)
T ss_pred CCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC
Confidence 1111111113333334444455577778889999999999999999999999888888887766443210
Q ss_pred ------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 355 ------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 355 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
.....+..............++++..|++.+|+..++.+.+.++|..+++.+.|.+.+.
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122222222344467888999999999999999999999999999999999883
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-20 Score=172.99 Aligned_cols=344 Identities=14% Similarity=0.099 Sum_probs=208.4
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-CchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHhhh
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGM 141 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~ 141 (456)
.+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.++|.
T Consensus 35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~ 114 (493)
T PRK15462 35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY 114 (493)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 35677999999999999999999999999999999999 999999999999999988776543 2233444445555667
Q ss_pred cccccccceeeeeccCCC--CchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCChhH
Q 012803 142 GLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPESPRW 215 (456)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~p~~ 215 (456)
|...+...++++|.+|++ +|..+.++...+.++|..++|.+.+++ |||+.|.+.++..+++++.++...+....
T Consensus 115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~ 194 (493)
T PRK15462 115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194 (493)
T ss_pred ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 777787888999999876 688899999999999999999999887 89999998766555444443322111000
Q ss_pred -HHhcCCcHHHHHHHHHHhC------------CCCCchHHHHH-HHH--H-HH-----HHhhcChhhHHHHhhhh--hhh
Q 012803 216 -LAKTGKGIESEAALQRLRG------------ADADISEEAAE-IRE--Y-TE-----TLERLSEGGILELFQRK--YAH 271 (456)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~--~-~~-----~~~~~~~~~~~~~~~~~--~~~ 271 (456)
...+++..+.++....... ......++... .-. . .. .... ++.+..| |+| ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e--r~r~~~~~ 271 (493)
T PRK15462 195 TRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYR-KAENQKQ--RKELGLIV 271 (493)
T ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHH--HhhHHHHH
Confidence 0000000000000000000 00000000000 000 0 00 0000 0000000 111 122
Q ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHc--C--CCchHHHHHHHHHHHHHHHHHHHHHhhcCC--cc-----hhhhh
Q 012803 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISA--G--FSGSIGMIAMVVIQIPMTLLGVLLMDKSGR--RP-----LLLVS 340 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~-----~~~~~ 340 (456)
.+.+...+++..+....+.+..|.....+.. + ..+.+....+.+..++.+++..++-.|..| |. -...+
T Consensus 272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g 351 (493)
T PRK15462 272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALG 351 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 2333334444444444556666665443322 2 345577788888888878777776555532 21 15667
Q ss_pred hHHHHHHHHHHHHHH---------------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHH-HHHHHHHH
Q 012803 341 AAGTCLGCLLAALSF---------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVS-WLGSWIIS 404 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~i~~ 404 (456)
.++++++++.+.... ...++....-....|+..+.++++.|++.+|..+|+..... .+|..++.
T Consensus 352 ~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g 431 (493)
T PRK15462 352 LGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAG 431 (493)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665421 11133344445567899999999999999999999986643 56666666
Q ss_pred HHHHHH
Q 012803 405 FTFNFL 410 (456)
Q Consensus 405 ~~~g~l 410 (456)
.+.+..
T Consensus 432 ~~~~~~ 437 (493)
T PRK15462 432 VIADQT 437 (493)
T ss_pred HHHHHh
Confidence 665554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=162.38 Aligned_cols=380 Identities=16% Similarity=0.107 Sum_probs=266.4
Q ss_pred CchhHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHH
Q 012803 31 ASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFS 110 (456)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 110 (456)
.+...++|++++..++.++..+...-.++++.....+.+| +.+..-|..-+|++.+....+++-|+.||+|-|...+++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3566777888888888888887777777777777778888 888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc------hhh--HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 012803 111 DIVCIIGWVIIVFSK------AAW--WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLI 182 (456)
Q Consensus 111 ~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l 182 (456)
..+.++++.+-..+. .++ ....+..+.+.++-........+..-||+++||..+..+-..+..+|.+++.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999987753 344 666888888888877777767888899999999999999999999999998888
Q ss_pred hccc----------cchH--HHHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 012803 183 GAFL----------NWRI--LALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY 249 (456)
Q Consensus 183 ~~~l----------~w~~--~f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
...+ .|.. .|+....+..+.+++. +..++.|+...+. ++
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~-----s~----------------------- 247 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA-----SQ----------------------- 247 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-----hH-----------------------
Confidence 7666 4654 3444444433332322 3334433210000 00
Q ss_pred HHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcC---CCchHHHHHHHHHHHHHHHHHHH
Q 012803 250 TETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAG---FSGSIGMIAMVVIQIPMTLLGVL 326 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ 326 (456)
....+.+...+.++.++++++....++........ +.++..+...+...+ ..++.......+++++++++.|.
T Consensus 248 ~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F----~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 248 AALQDASFPKSIKSCFKNRQFIILAICYGIGLGLF----NSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHH----HHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 00001224556778888888877777766665543 334444443333333 45678888889999999999999
Q ss_pred HHhhcCCc-chhhhhhHHHHHHH-HHHHHH---------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHH
Q 012803 327 LMDKSGRR-PLLLVSAAGTCLGC-LLAALS---------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLV 395 (456)
Q Consensus 327 l~d~~g~~-~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 395 (456)
+.||.++- .++.+......++. .+.... +......+.+..+..|+..-+..|..=|..-++..|+.+..
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEee
Confidence 99998764 44444444443332 221111 33446778888888999999999987778889999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hh----hhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 012803 396 SWLGSWIISFTFNFLMK-WS----STGTFFAFSAICSLTVLFVAKLVPETKGR 443 (456)
Q Consensus 396 ~~~g~~i~~~~~g~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
+++-+.+-.++.+...+ .+ ....-+.....+.+..++..++.++.+++
T Consensus 404 gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 404 GQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 99999999999988887 33 23333444444555555555544443333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=175.91 Aligned_cols=318 Identities=19% Similarity=0.212 Sum_probs=238.4
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhc----ccCchHHH-HHHHHHHHHHHHHHHHh-c-------hhh
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGRRGTM-GFSDIVCIIGWVIIVFS-K-------AAW 128 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~G~r~~~-~~~~~~~~~~~~~~~~~-~-------~~~ 128 (456)
.+.+.+.+|+++...|.+.....+..++..|+.|.++| |+||||.. +.|.+..+++..+.... + ...
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 34577888999999999999999999999999999999 89976555 67888888888777765 4 233
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccC-CCCchhHHHHHHHHHHHHHHHHHHHhccc-----------cchHHHHHhH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------NWRILALIGT 196 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----------~w~~~f~~~~ 196 (456)
.+.+..++..++......+-.++..|..+ +++|.+..+....+..+|..+...+...+ +|++..++.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 45677777789989888888999999997 46899999998888888876544443322 4888888888
Q ss_pred HHHHHHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHH
Q 012803 197 IPCLVQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (456)
Q Consensus 197 ~~~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (456)
++.++.... .+..+|+++.. ..++++.+.+..+++++++|.++....
T Consensus 185 iv~~v~~~i~~~~~ke~~~~~--------------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~ 232 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKERSVEV--------------------------------TEQEKKISLRDSLRSLFRNRPFRILLL 232 (428)
T ss_pred HHHHHHhhhhhheeeeccccc--------------------------------cccccccccccchhhhcccchHHHHHH
Confidence 777765444 45567621100 001112233455677888888888888
Q ss_pred HHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH
Q 012803 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 355 (456)
...+............++|.....+... ..+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence 8888777777666777777777776663 334666677888899999999999999999999999999888887766542
Q ss_pred --------HHHHHHHHhcccccccceeeecccCCc-------cchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 356 --------LFQVYTGSFSLGMGGIPWVIMSEVFPI-------NMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 356 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....+.+..........+++.+|..+. +..|...|+.+....++..+++.+.+.+.+
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 111333444444567778888887763 346999999999999999999999998877
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=183.25 Aligned_cols=319 Identities=13% Similarity=0.041 Sum_probs=203.0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhc----ccCc-hHHHHHHHHHHHHHHHHHHHhch------hhHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD----YIGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWLDL 132 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 132 (456)
.+.+.+|+++.++|.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..+....++ +..+++
T Consensus 32 yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~ 111 (473)
T PRK10429 32 YYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCV 111 (473)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 466778999999999999999999999999999999 6698 66777788888877666644332 334556
Q ss_pred HHHHHHhhhcccccccceeeeecc-CCCCchhHHHHHHHHHHHHHHHHHHHhcc----c-------cchHHHHHhHHHHH
Q 012803 133 GRLLVGYGMGLLSYVVPVYIAEIT-PKNLRGGFTTVHQLMICIGVSMTYLIGAF----L-------NWRILALIGTIPCL 200 (456)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~----l-------~w~~~f~~~~~~~l 200 (456)
..++.+++.....+.-.++..|.. ++++|.+..++...+.++|..+.+.+... + +|+....+.+++.+
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~ 191 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 667778888888888889999998 58889998888666666664444332211 1 46666666666655
Q ss_pred HHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHH
Q 012803 201 VQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (456)
Q Consensus 201 ~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (456)
+.. +..+..+|.+.....+. .++++.+.+..++.+++++.++..+...++
T Consensus 192 ~~~~~~~~~~~e~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 192 VSTIITLRNVHEVYSSDNQVS-----------------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALA 242 (473)
T ss_pred HHHHHHHcCceecCCcccccc-----------------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence 533 33344666431000000 000001112233445567776666665555
Q ss_pred HHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----
Q 012803 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS----- 354 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----- 354 (456)
............++|.....+. ....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+...
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP 321 (473)
T ss_pred HHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 5544333333333333332221 1112244455567888899999999999999999887776655544443221
Q ss_pred ------HHHHHHHHHhcccccccceeeecccCC-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 ------FLFQVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....++.+.......+..+++.+|..+ .+..|...|..+....++..+++.+.|.+.+
T Consensus 322 ~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 322 HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222233334556677777755 3345679999999999999999999999987
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-19 Score=167.59 Aligned_cols=342 Identities=16% Similarity=0.149 Sum_probs=228.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHH-HHHHHHHHHHHHHHh-c-hhhHHHHHHHHHHhhhcccccccce
Q 012803 74 AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGF-SDIVCIIGWVIIVFS-K-AAWWLDLGRLLVGYGMGLLSYVVPV 150 (456)
Q Consensus 74 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (456)
+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++....+. + +++...+.-++.-++.+.....-.+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999987766644 445555566666664 3 3444444455555677777778889
Q ss_pred eeeeccCCCCc--------------------------hhHHHHHHHHHHHHHHHHHHHhccc------------cchHHH
Q 012803 151 YIAEITPKNLR--------------------------GGFTTVHQLMICIGVSMTYLIGAFL------------NWRILA 192 (456)
Q Consensus 151 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~l------------~w~~~f 192 (456)
++.|..+++++ ++..+.-.....+|.++.-.+.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 8999888888888887766554332 247777
Q ss_pred HHhHHHHHH-HHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhh
Q 012803 193 LIGTIPCLV-QLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAH 271 (456)
Q Consensus 193 ~~~~~~~l~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (456)
.+.++.-++ .+...+++||.|+....+......... -++-...++++.|.|...
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~l~~t~k~~~~~~~~~ 284 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFG-------------------------FKRLWRTFKEIRKLRQLF 284 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHH-------------------------HHHHHHHHHHHHhChHHH
Confidence 777776554 556667888876420000000000000 011122344444556666
Q ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhhhhHHHHH-HH
Q 012803 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--PLLLVSAAGTCL-GC 348 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~-~~ 348 (456)
..+++.++..-...........|....++....+.....+...+.+++|+++.+++.||+|.| +.+..+.....+ ..
T Consensus 285 ~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 285 LFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 666666666555444445555555554444444444777888899999999999999999998 666665555422 22
Q ss_pred HHHH-------------HHHHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 012803 349 LLAA-------------LSFLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS- 414 (456)
Q Consensus 349 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~- 414 (456)
..+. -.+...++.+.+..+..+..-++.+|+.|+++.+...|++.......+.+||.+.|.+.+..
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2221 12445567777778888889999999999999999999999999999999999999999933
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 415 -STGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
....+..+.++.++..++ +..++..|
T Consensus 445 ~~r~g~~~l~~lf~~gl~l-l~~v~~~~ 471 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLIL-LFFVDVEK 471 (477)
T ss_pred CchhHHHHHHHHHHHHHHH-Hhhccchh
Confidence 344455555544444443 34444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=178.51 Aligned_cols=315 Identities=14% Similarity=0.136 Sum_probs=195.8
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc----CchHHH-HHHHHHHHHHHHHHHHhc-------hhhHH
Q 012803 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI----GRRGTM-GFSDIVCIIGWVIIVFSK-------AAWWL 130 (456)
Q Consensus 63 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~----G~r~~~-~~~~~~~~~~~~~~~~~~-------~~~~l 130 (456)
+.+.+.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++....+ ..+.+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 357788899999999999999999999999999999996 776644 566655554444432111 12334
Q ss_pred HHHHHHHHhhhcccccccceeeeeccCC-CCchhHHHHHHHHH-----HHHHHHHHHHhccc------cchHHHHHhHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQLMI-----CIGVSMTYLIGAFL------NWRILALIGTIP 198 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~~~~~l~~~l------~w~~~f~~~~~~ 198 (456)
++..++.+++.+...++..++..+..++ ++|.+..++...+. .++..++|.++... +|.....+.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 4555677888888887777777766644 56887766655433 34555666665443 121111222222
Q ss_pred HHHHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++.. +.....||+++ +++ ++...+..+++++++|.+....+..
T Consensus 193 ~~~~~~~~~~~~~e~~~----~~~-------------------------------~~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVV----RIV-------------------------------AQPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccC----CCc-------------------------------cCCCHHHHHHHHhCCchHHHHHHHH
Confidence 22222 22233455421 000 0001122356678888887777766
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-- 355 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-- 355 (456)
++............++|....++.......+......++.+++.++.+++.||+++|+.+..+.++.+++.+.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~ 317 (448)
T PRK09848 238 LCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVW 317 (448)
T ss_pred HHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCch
Confidence 666665554445555565544433222222333334566778889999999999999999988887777766554321
Q ss_pred --H----HHHHHHHhcccccccceeeecccCCcc-------chhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 356 --L----FQVYTGSFSLGMGGIPWVIMSEVFPIN-------MKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 356 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
. ...+.+.......+...+...|..|.+ .+|...|+.+....+|..+++.+.+.+.+
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222222333455566667776543 45999999999999999999999999876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=166.67 Aligned_cols=357 Identities=17% Similarity=0.166 Sum_probs=209.2
Q ss_pred eccccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHH--HHHH-HHHHh----chhh-
Q 012803 58 SSPAQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCI--IGWV-IIVFS----KAAW- 128 (456)
Q Consensus 58 ~~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~--~~~~-~~~~~----~~~~- 128 (456)
..|..| .+.++.|++.+++|.+.++..+...+.+|+.|.++||.|.||-++..+.+.. .+.. ...+. .|.+
T Consensus 26 ~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~l 105 (412)
T PF01306_consen 26 FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWL 105 (412)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HH
T ss_pred HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 3555689999999999999999999999999999999997776544433222 2222 22222 2322
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~ 205 (456)
..+++-+..|+......|...+++.++... .+.=.|-.-...++|.+++..+++.+ +-+..||+....+++..++
T Consensus 106 g~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~ll 183 (412)
T PF01306_consen 106 GAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLL 183 (412)
T ss_dssp HHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHH
Confidence 222333333444444445555555444321 12223333344555555565555555 5567788776666554444
Q ss_pred hhcc-CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 012803 206 LCFI-PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (456)
Q Consensus 206 ~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (456)
.+.. |+.++....++..+ .++++.+.....+++|+|++|.+.+........+
T Consensus 184 l~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y 236 (412)
T PF01306_consen 184 LLLLKPDVPPQAEVADALG---------------------------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIY 236 (412)
T ss_dssp HHSS---SSSSS-SSTTSS---------------------------S------HHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcCchhhhhhcccc---------------------------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4333 33322100000000 0001112233567888999988777665555554
Q ss_pred hccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------
Q 012803 285 FGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------ 355 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------ 355 (456)
......++.|...+++..+.. .+...+...+..++.-.+.+++.+|+|.|+.++++..++++=..+.++..
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~ 316 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVIS 316 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 444444555555544333222 23556666778888888999999999999999999888887777665431
Q ss_pred HHHHHHHHhcccccccceeeecccCCccchhhHhHHH-HHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHH
Q 012803 356 LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMKWS-STGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~ 433 (456)
....+-+.-.........-|+++.+|++..++...+. +...++|.++.+.+.|.+.|.- ....+++.+.+.+...++.
T Consensus 317 ~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 317 LIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 1112222222222333457888999999999999885 5778899999999999999944 4567778888777777777
Q ss_pred HhcccCCCCC
Q 012803 434 AKLVPETKGR 443 (456)
Q Consensus 434 ~~~~~~~~~~ 443 (456)
.+.++++++.
T Consensus 397 ~f~l~~~~~~ 406 (412)
T PF01306_consen 397 AFTLKKDKKQ 406 (412)
T ss_dssp HHHS--SSST
T ss_pred eeeecCCCcc
Confidence 7777665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=167.33 Aligned_cols=313 Identities=12% Similarity=0.039 Sum_probs=198.3
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc----cCch-HHHHHHHHHHHHHHHHHHHhch------hhHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRR-GTMGFSDIVCIIGWVIIVFSKA------AWWLDL 132 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 132 (456)
.+.+.+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++-..++ ...+.+
T Consensus 35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 4667889999999999999999999999999999996 7885 5556777888887776655543 344566
Q ss_pred HHHHHHhhhcccccccceeeeeccC-CCCchhHHHHHHHHHHHHHHHHHHHhcc----c-------cchHHHHHhHHHHH
Q 012803 133 GRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAF----L-------NWRILALIGTIPCL 200 (456)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~----l-------~w~~~f~~~~~~~l 200 (456)
.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+... + +|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 6667788888888888888899886 6789999999999988887766554322 1 47766666666655
Q ss_pred HHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHH
Q 012803 201 VQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (456)
Q Consensus 201 ~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (456)
++.... ...+|.++. +. ++.+.+...+..++++.++.......+
T Consensus 195 i~~~i~~~~~kE~~~~-----~~------------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~ 239 (460)
T PRK11462 195 MMLAFCFFTTKERVEA-----PP------------------------------TTTSMREDLRDIWQNDQWRIVGLLTIF 239 (460)
T ss_pred HHHHHHHhcceeccCC-----Cc------------------------------cCCCHHHHHHHHhCChHHHHHHHHHHH
Confidence 544333 334553210 00 000012234456667766655544444
Q ss_pred HHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----
Q 012803 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS----- 354 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----- 354 (456)
.............+|.....+... ..+.......++.+++.+++++++||+++|+....+..+.++..+++.+.
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS 318 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 444333333344444444433211 22345566778888899999999999999887664444333322222111
Q ss_pred ---HHHHHHHHHhcccccccceeeecccCC-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 ---FLFQVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
....++.++......+..+++..|..+ .+..|...+..+....+|.++++.+.|.+.+
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222222223444556666554 2334666677778899999999999999887
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=157.85 Aligned_cols=319 Identities=17% Similarity=0.165 Sum_probs=231.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc----cCc-hHHHHHHHHHHHHHHHHHHHhch------hhHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGR-RGTMGFSDIVCIIGWVIIVFSKA------AWWLDL 132 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~G~-r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~ 132 (456)
.+.+.+|+++..+|.+..+--+--++.-|+.|.++|| +|| |+.++.+.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 3678899999999999999999999999999999995 787 56668888999998888888774 344667
Q ss_pred HHHHHHhhhcccccccceeeeeccC-CCCchhHHHHHHHHHHHHHHHHHHHhc----cc-------cchHHHHHhHHHHH
Q 012803 133 GRLLVGYGMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGA----FL-------NWRILALIGTIPCL 200 (456)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~----~l-------~w~~~f~~~~~~~l 200 (456)
.-.+.+++.......-.++.+|..+ ++||.+..++.+.+.++|..+...+.. .+ ||+..-.+.++++.
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7788899999988888899999874 567999999999998888665433332 22 67777777666666
Q ss_pred HHHHH-hhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHH
Q 012803 201 VQLIG-LCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGL 279 (456)
Q Consensus 201 ~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (456)
+..+. ++-.+|.+.. ..+. .+..+++.+..+..+++|+.+........+
T Consensus 198 i~~l~~~~~v~ER~~~---~~~~---------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVE---TQPT---------------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCc---cccC---------------------------cccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 54433 3445665420 0000 000111222334456778877777776666
Q ss_pred HHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH----
Q 012803 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF---- 355 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---- 355 (456)
.......-.....+|....++...............+.+.+.++..++.+|+|+|++...+.++.+++.+++.+..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~ 327 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 6655555556667777766666555555677777778888899999999999999999999999888888776642
Q ss_pred ----HHHHHHHHhcccccccceeeecccCC-------ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 356 ----LFQVYTGSFSLGMGGIPWVIMSEVFP-------INMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 356 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
...++.+.......+..+++++|..+ .+..|...|...++.-+|.+++..+.|+..+
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233334444456788888887764 3445889999999999999999999999887
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=158.06 Aligned_cols=264 Identities=14% Similarity=0.060 Sum_probs=181.1
Q ss_pred HHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---------------
Q 012803 122 VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------- 186 (456)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--------------- 186 (456)
+..++|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+..+++|..++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999998732
Q ss_pred -----cchHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChh
Q 012803 187 -----NWRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEG 259 (456)
Q Consensus 187 -----~w~~~f~~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (456)
+|+++|++.+.+.++..+.+.+ +||.++ ++.++. .+ + +..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~------------------------~~--~--~~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV------------------------SS--G--DTT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc------------------------cc--c--ccc
Confidence 5889998766655444334333 344211 000000 00 0 000
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHH--HHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchh
Q 012803 260 GILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI--FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLL 337 (456)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 337 (456)
..++.++++..+...+..+++...+.+...+++.|+.+. ++......+........+.++|+++++++.||+++|+.+
T Consensus 132 ~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l 211 (310)
T TIGR01272 132 QKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL 211 (310)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 112345566666655656665555555556666666432 122222344778888899999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 338 LVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 338 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
..+..+.+++.++.... .......+++....+|...+...+..|+ +.+++.++. ....+|+++.|.+.|.+.|
T Consensus 212 ~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad 289 (310)
T TIGR01272 212 AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLAD 289 (310)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence 87777766665444331 2222345555566678888888887774 456677775 6778999999999999999
Q ss_pred h-hhhhHHH
Q 012803 413 W-SSTGTFF 420 (456)
Q Consensus 413 ~-~~~~~~~ 420 (456)
. +....++
T Consensus 290 ~~g~~~a~~ 298 (310)
T TIGR01272 290 CLGIQLAFA 298 (310)
T ss_pred hccchHHHH
Confidence 4 4333333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-18 Score=149.49 Aligned_cols=313 Identities=15% Similarity=0.146 Sum_probs=215.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHH-HHHHHHHHHHHHHHHHhch--hh-HHHHHHHHHHhhhcccccccc
Q 012803 74 AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTM-GFSDIVCIIGWVIIVFSKA--AW-WLDLGRLLVGYGMGLLSYVVP 149 (456)
Q Consensus 74 ~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~-~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~~~ 149 (456)
+..+...++..+..++.+|..|.++|+.|+||.. -....+..+...+..++++ ++ ..++...+..++.......-.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 4578889999999999999999999999976555 4555555566666666655 44 445556777888888888889
Q ss_pred eeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh------c----------------cccchHHHHHhHHHHHH-HHHHh
Q 012803 150 VYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG------A----------------FLNWRILALIGTIPCLV-QLIGL 206 (456)
Q Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~------~----------------~l~w~~~f~~~~~~~l~-~~~~~ 206 (456)
+++.+..++++-++..+.-.....+|..+.-+.. + ..+=|..+.+.++..++ .+..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999998878877776666666655443332 1 00457777777776655 44555
Q ss_pred hccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhc
Q 012803 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (456)
Q Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (456)
+.+++.++-. .+. . +...+.-++-..+++++.++++...++++.++..-....
T Consensus 218 ~~v~~~~~~~---~~~--------------------~----~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~t 270 (438)
T COG2270 218 LNVHDAEKIS---SPP--------------------P----TALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNT 270 (438)
T ss_pred hccccccccc---ccc--------------------h----HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHH
Confidence 6666654200 000 0 000011112234456666667666666666665544333
Q ss_pred cchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHH
Q 012803 287 GVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVY 360 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 360 (456)
....-..|....++....+..+......+..++|+++.|++.||+|.|+++..+.++..+..+...+. +...++
T Consensus 271 il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll 350 (438)
T COG2270 271 ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLL 350 (438)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 33333333333333333333366777788999999999999999999988888877766555444432 445577
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~ 413 (456)
.+.+..+.....-++..+.+|+++.++..|+++..++.....||.+.+.+.+.
T Consensus 351 ~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 351 VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999983
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=156.12 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=138.8
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhccccceecccccccccc--cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCc-h
Q 012803 28 SGSASATSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGR-R 104 (456)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~-r 104 (456)
.++++.+|+...+..+. +++.....+++.+..-...++ .+.+.+..|++.++..++.+++++.+|++..|.+. |
T Consensus 26 ~~~~~t~wrsi~l~~~~---sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k 102 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLN---SFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK 102 (488)
T ss_pred ccccCCchHhHHHHHHH---HHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence 33444455554444333 444455566555544444444 77788889999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHHHHHHH-HHh---c-hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHH
Q 012803 105 GTMGFSDIVCIIGWVII-VFS---K-AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT 179 (456)
Q Consensus 105 ~~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 179 (456)
+.++.|.++..+++++. ++. + ..+.++++|++.|+|.| .....-+++++....++|.++++....+..+|.++|
T Consensus 103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 88999999999999988 332 3 67889999999999977 456777899998888999999999999889999999
Q ss_pred HHHhccc------c-----------chHHHHHhHHHHHHHHHHh-hccCCChh
Q 012803 180 YLIGAFL------N-----------WRILALIGTIPCLVQLIGL-CFIPESPR 214 (456)
Q Consensus 180 ~~l~~~l------~-----------w~~~f~~~~~~~l~~~~~~-~~~~~~p~ 214 (456)
|.++..+ | +..+-|+.+++.++.++.. .+++|.++
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 8887554 1 3456677788877765554 56677654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-20 Score=179.01 Aligned_cols=365 Identities=18% Similarity=0.170 Sum_probs=3.0
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF 123 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 123 (456)
.++..+......++....++.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33344444666677788889999999999999999999999999999999999999988889999999999999998875
Q ss_pred hc--------------------------------------------------hhhHHHHHHHHHHhhhcccccccceeee
Q 012803 124 SK--------------------------------------------------AAWWLDLGRLLVGYGMGLLSYVVPVYIA 153 (456)
Q Consensus 124 ~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 153 (456)
-+ -+..++++.++.|+|.+..++...+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 1355788899999999999999999999
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--------------------------cchHHHHHhHHHHHHHHHHhh
Q 012803 154 EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------------------NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 154 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--------------------------~w~~~f~~~~~~~l~~~~~~~ 207 (456)
|..++++-+.++|+..+...+|.++|.++++.. .|..-|++.+.+.++..+.++
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888654 266666667777766666666
Q ss_pred ccCCC-hhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhc
Q 012803 208 FIPES-PRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFG 286 (456)
Q Consensus 208 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (456)
++|++ |+. .+ ..++.+...++..+.+.+..++ ++..+......++.....+++++|+.+....++.........+
T Consensus 248 ~FPk~lp~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G 323 (539)
T PF03137_consen 248 FFPKKLPGT-SE--RQEEKESSERKEEDSDKDSFKD-PKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG 323 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCCCc-cc--ccchhhhhhcchhhhhhhcccc-cccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 66665 322 00 0000000000000000000000 0000001112234456677888888888777777777776666
Q ss_pred cchhhHHhHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHhhcC--CcchhhhhhHHHHHHHHHHHHH---------
Q 012803 287 GVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIPMTLLGVLLMDKSG--RRPLLLVSAAGTCLGCLLAALS--------- 354 (456)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~--------- 354 (456)
..+..|-|++..++.....+++.. .+...+..+|.+++|++.+|++ .|.......+...++.+.....
T Consensus 324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~ 403 (539)
T PF03137_consen 324 FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPP 403 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCc
Confidence 667777777776666655555443 3333477788899999999985 3444444444333333321110
Q ss_pred -------HH---------------------------HH-----------HHHHH-----hccc-ccccceeeecccCCcc
Q 012803 355 -------FL---------------------------FQ-----------VYTGS-----FSLG-MGGIPWVIMSEVFPIN 383 (456)
Q Consensus 355 -------~~---------------------------~~-----------~~~~~-----~~~~-~~~~~~~~~~~~~~~~ 383 (456)
+. .. .+... +..+ .........-+.+|++
T Consensus 404 ~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~ 483 (539)
T PF03137_consen 404 IAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPE 483 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChh
Confidence 00 00 01000 0000 1122233445788999
Q ss_pred chhhHhHHHHHHHH-HHHHHHHHHHHHHHh
Q 012803 384 MKGSAGSLVTLVSW-LGSWIISFTFNFLMK 412 (456)
Q Consensus 384 ~~~~~~g~~~~~~~-~g~~i~~~~~g~l~~ 412 (456)
+|+.+.|+...+.+ +|.+-+|.++|.+.|
T Consensus 484 ~rs~AlGv~~~~~rllg~IPgPIifG~iiD 513 (539)
T PF03137_consen 484 QRSFALGVQWLIIRLLGFIPGPIIFGAIID 513 (539)
T ss_dssp ------------------------------
T ss_pred hcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence 99999999998877 688889999999998
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=145.23 Aligned_cols=367 Identities=16% Similarity=0.095 Sum_probs=240.1
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHhhhcccc
Q 012803 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLLS 145 (456)
Q Consensus 69 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~ 145 (456)
+|.|+++..-+.+.|..-.-+...++|+++|| .|+|+++..|.++..+|.++.+.++ +...++++-.+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 45999998888888888888889999999999 7999999999999999999999984 78889999999999999999
Q ss_pred cccceeeeeccCCCC--chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCC-------
Q 012803 146 YVVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES------- 212 (456)
Q Consensus 146 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~------- 212 (456)
+...++++|.+|+++ |-..++++..+.++|..++|++.+++ ||+..|.+.++-..++++.++..++.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 999999999998754 57788899999999999999988877 99999999888777776666554322
Q ss_pred --hhHHHhcCCcHHHHHHHHHHhCCC---CCchHHHHHHH----HHHH-----HHhhcChhhHHHHhhhhhhhHHHHHHH
Q 012803 213 --PRWLAKTGKGIESEAALQRLRGAD---ADISEEAAEIR----EYTE-----TLERLSEGGILELFQRKYAHSLIVGVG 278 (456)
Q Consensus 213 --p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (456)
|..+..+............+.... ....+...... -..+ +....++.. .+--|-....++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~ 294 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAV 294 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHH
Confidence 111100000000000000000000 00000000000 0000 000000100 11111223344555566
Q ss_pred HHHHHHhccchhhHHhHHHHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----hhhhhhHHHHHH
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISA----GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--P-----LLLVSAAGTCLG 347 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~-----~~~~~~~~~~~~ 347 (456)
+++..+....+.+..|.....+.. ....++..+...+.-++.+++..++..+.+++ . -+.++..+++.+
T Consensus 295 iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~ 374 (498)
T COG3104 295 IFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLG 374 (498)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHH
Confidence 666666677788888887766554 13455788888888888888777777774432 1 234556666666
Q ss_pred HHHHHHHH----------------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHH--
Q 012803 348 CLLAALSF----------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNF-- 409 (456)
Q Consensus 348 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~-- 409 (456)
++++.... ...++..+.-....|+..+++....|+...+..+++.......|+.++..+.+.
T Consensus 375 fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~ 454 (498)
T COG3104 375 FLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTA 454 (498)
T ss_pred HHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccccc
Confidence 66655431 111444455556678888999999999999999999998888888888888773
Q ss_pred -----HHhhhhhhHHHHHHHHHHHHHHHHHhc
Q 012803 410 -----LMKWSSTGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 410 -----l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
.........+..++...++........
T Consensus 455 ~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 455 VTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 222333444555555555555544433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=159.16 Aligned_cols=300 Identities=17% Similarity=0.184 Sum_probs=212.4
Q ss_pred HHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHH
Q 012803 38 VLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIG 117 (456)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 117 (456)
.....+.++..+..++..+++...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 34455566666777777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-------------------h--------------------------------hh-HHHHHHHHHHhhhcccc
Q 012803 118 WVIIVFSK-------------------A--------------------------------AW-WLDLGRLLVGYGMGLLS 145 (456)
Q Consensus 118 ~~~~~~~~-------------------~--------------------------------~~-~l~~~r~l~G~~~~~~~ 145 (456)
++++++-+ + ++ .++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 99998720 0 22 56788999999999999
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----------------------cchHHHHHhHHHHHHH
Q 012803 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----------------------NWRILALIGTIPCLVQ 202 (456)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----------------------~w~~~f~~~~~~~l~~ 202 (456)
+...+|+-|...+++-+.++|+..+...+|.++|.+++++. .|+.-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 3777788888888888
Q ss_pred HHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHH
Q 012803 203 LIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (456)
Q Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (456)
.+.++++|++.+.. +++.++++ .+..+.++...++.. .....-++.+...+++++|+.+....+...+...
T Consensus 336 a~p~f~fPk~lp~~---~~~~~~~~-~~~~k~~~~~~~~~~-----~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~ 406 (735)
T KOG3626|consen 336 AVPLFFFPKELPKS---QKRKRARD-LHVLKTESGGAKSDK-----TFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESL 406 (735)
T ss_pred HHHHHhCcccCccc---cccchhhh-hcccccccccccCCc-----chhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 88888887664211 11000000 000000000000000 0001112344566778888887777777777766
Q ss_pred HHhccchhhHHhHHHHHHHcCCCchHHH-HHHHHHHHHHHHHHHHHHhhcCC--cchhhhhhHHHHH
Q 012803 283 QQFGGVNGIAFYASSIFISAGFSGSIGM-IAMVVIQIPMTLLGVLLMDKSGR--RPLLLVSAAGTCL 346 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~ 346 (456)
...+..+.+|-|+.+.++.....+..+. .+...+..+|.+++|++.+|+.. |.......+...+
T Consensus 407 ~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 407 AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 6666666666666665555544444444 33334556778899999999854 3333333333333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-17 Score=156.29 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=131.5
Q ss_pred cccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHH---HHHhchhhHHHHHHHH
Q 012803 61 AQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI---IVFSKAAWWLDLGRLL 136 (456)
Q Consensus 61 ~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l 136 (456)
.+|. +.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...+++++++
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM 351 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444 44678999888888888999999999999999999999999998887654443332 2234567778888999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHhhccCC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPE 211 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~~~~~~ 211 (456)
.|++.+........++.|.+|++.|+++.++......++..++|.+.+.+ +|+.++++..+++++.++..+++||
T Consensus 352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pe 431 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKE 431 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 98877766666777888999999999999974444445556677666654 5787777777777777666777899
Q ss_pred ChhHHHhc-----CCcHHHHHHHHHHh
Q 012803 212 SPRWLAKT-----GKGIESEAALQRLR 233 (456)
Q Consensus 212 ~p~~~~~~-----~~~~~~~~~~~~~~ 233 (456)
+|+|+.++ ++.+|+++.+++++
T Consensus 432 s~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 432 TANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccCCCCCCccccccchhhHHHHhhccc
Confidence 99987754 77788888888776
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=127.28 Aligned_cols=318 Identities=15% Similarity=0.064 Sum_probs=219.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccC-----chHHH-HHHHHHHHHHHHHHHHh-----c-------h
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-----RRGTM-GFSDIVCIIGWVIIVFS-----K-------A 126 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G-----~r~~~-~~~~~~~~~~~~~~~~~-----~-------~ 126 (456)
+..|++++....+.+.+...+... ..+.+|+.+|+.+ ||..+ ..|.++...+..+..++ . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 667899999999999999988766 5899999999998 77555 56666666666555542 2 2
Q ss_pred h--h--HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--c---chHHHHHh--
Q 012803 127 A--W--WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--N---WRILALIG-- 195 (456)
Q Consensus 127 ~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--~---w~~~f~~~-- 195 (456)
. + ...+...+.|+|.+....+..++++|..|+++|+++.++.....-+|.+++..+.+.+ + -|..-.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2 2 2344567789998888889999999999999999999999999999999998887765 2 22222222
Q ss_pred HHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHH
Q 012803 196 TIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV 275 (456)
Q Consensus 196 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (456)
+++.++..+...+=.|+++... .. ..++++......++++..+++.++++.
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~-~~----------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRR-AA----------------------------AAERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHhcccCCccc-cc----------------------------CCCCCCccHHHHHHHHHhCCChhHHHH
Confidence 2222221122222223211000 00 000111223445666777888888888
Q ss_pred HHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh-hcCCcchhhhhhHHHHHHHHHHHHH
Q 012803 276 GVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMD-KSGRRPLLLVSAAGTCLGCLLAALS 354 (456)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (456)
..++....++.-...+-.|--+.++.+..+...+....+.+.++|-.+.+++.. |.++++....++...++++.++...
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666777777777666555667788888888999888888766 6777787778888887777766554
Q ss_pred H--------HHHHHHHHhccccc-ccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 F--------LFQVYTGSFSLGMG-GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 ~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
. ....+...+..|.+ ....+.+.+..++++.|..+|.-...+.+...++..+.|.+.|
T Consensus 296 ~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 296 GPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233333333333 3344666788888999999999999999999999999999998
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-14 Score=130.99 Aligned_cols=308 Identities=18% Similarity=0.199 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhh--hcccccccceeeeeccCCC
Q 012803 82 ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG--MGLLSYVVPVYIAEITPKN 159 (456)
Q Consensus 82 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~i~~~~~~~ 159 (456)
...+...+.++..|.++||+|||..+....+...+..++..+.. |++++ +.|+. .+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 33678888999999999999999999999999888888777766 33333 44442 3346677789999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCCChhHHHhcCCcHHHHHHHHHHhC
Q 012803 160 LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESPRWLAKTGKGIESEAALQRLRG 234 (456)
Q Consensus 160 ~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (456)
+|....++....+..+..++|.+++.+ |.-..|.+..+..++..+.. .++||+-....++ + ....+...
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~---~~~~~~~~ 218 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---D---ATLRELTP 218 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---c---ccccccCC
Confidence 999999999999999999999998876 67778888887777765544 6778874211111 0 00000000
Q ss_pred CCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccch-hhHHhHHHHHHHcCCCchHHHHHH
Q 012803 235 ADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVN-GIAFYASSIFISAGFSGSIGMIAM 313 (456)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 313 (456)
...+..+..+.. ......-.+|....+.....+.......... ...+|+...++......+......
T Consensus 219 ~~~~~~~~~~~~------------~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~ 286 (463)
T KOG2816|consen 219 GSLDSSHVADAF------------QSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLV 286 (463)
T ss_pred Ccccchhhhhhh------------hhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHH
Confidence 000000000000 0000000123333333333333333332222 445555544443333344555666
Q ss_pred HHHHHHHHHHHH-HHHhhcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhh
Q 012803 314 VVIQIPMTLLGV-LLMDKSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGS 387 (456)
Q Consensus 314 ~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
.....++.++.. .+...++.|+....+.....+......+. .........+.....+...+..+...+++++|+
T Consensus 287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~ 366 (463)
T KOG2816|consen 287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGK 366 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccc
Confidence 666666766555 67788888888888888887777777765 233344555555667788888899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 388 AGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 388 ~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+.++...+..+...++|.+.+.+..
T Consensus 367 v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 367 VFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999999999999999998865
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-15 Score=117.93 Aligned_cols=132 Identities=24% Similarity=0.349 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCC
Q 012803 80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN 159 (456)
Q Consensus 80 ~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 159 (456)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCC
Q 012803 160 LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE 211 (456)
Q Consensus 160 ~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~ 211 (456)
+|++..++.+....+|..+++.+++.+ +|++.+++.+...++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999888776 89999998887777655544 44444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=130.26 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcc
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 143 (456)
.+++++|.++.+.+++.+...+...++.++.|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI 321 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35677899999999998888888888999999999999999988887766666555555677888888899988887777
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCC
Q 012803 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE 211 (456)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~ 211 (456)
..+....+..|.+|+ +|++++++++...++|..++|.+++.+ ||+..|++.+++.++..+..+++||
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666667777888875 589999999988999999999988876 8999999888888887777777665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=124.55 Aligned_cols=334 Identities=17% Similarity=0.133 Sum_probs=193.6
Q ss_pred ccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-----CchHHHHHHHHHHHHHHHHHHHhc----hhhHH
Q 012803 60 PAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-----GRRGTMGFSDIVCIIGWVIIVFSK----AAWWL 130 (456)
Q Consensus 60 ~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~----~~~~l 130 (456)
+..|.+.+++|+++++.....+...+...+ -++.|.++|.+ .||+-++++.++..++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 345568999999999999999999999886 67899999976 356666777777766666565533 56666
Q ss_pred HHHHHHHHhhhcccccccceeeeeccCCC--CchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKN--LRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~ 204 (456)
.+.-++..+|......++.+++.|...++ .||...+.......+|.+++..+++.+ ++|..|.+.+++.++..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 77778888899999999999999887333 367888888888888999888888776 888889888777666554
Q ss_pred HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHH-HHHHHHHH
Q 012803 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIV-GVGLMVLQ 283 (456)
Q Consensus 205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 283 (456)
..+++.|+.+ +.+.++... ...+ +.+. .....++.....++.++.+..+...+ ..++....
T Consensus 170 ~~~~~~~e~~----~~~~~~~~~-------~~~~---~~~~----~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 231 (433)
T PF03092_consen 170 VALFLLEERK----VRPADEVFS-------FGKE---EVPC----LFGSFREQLSELWRALQQRAIWQPILFFIFFFNLP 231 (433)
T ss_pred HHHHhhhhcc----ccccchhhc-------cccc---ccch----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4444433211 000000000 0000 0000 00001122334455666666665555 22222222
Q ss_pred HhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------
Q 012803 284 QFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------ 354 (456)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------ 354 (456)
.........++.....+...++.. ....+..++.++|..+..+...+..-|+++....++.++..+.-...
T Consensus 232 ~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~ 311 (433)
T PF03092_consen 232 PSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNL 311 (433)
T ss_pred cCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEee
Confidence 111111011222222222223433 22333444445555554444444455555544444433322211000
Q ss_pred -H---------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 355 -F---------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 355 -~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
. ....+......-..-......+|+.|+...|+.+++...+.++|..++..+...+.+
T Consensus 312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000111111111112223567899999999999999999999999999999988877
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=136.64 Aligned_cols=138 Identities=15% Similarity=0.075 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeec
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (456)
..+...+..++..++.++.|+++||+|||++++.+.++++++.++.+++++...+++.+++.|++.++..+...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777899999999999999999999999999999999999999999888888889999998888888899999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHhhccCCCh
Q 012803 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~~~~~~~p 213 (456)
+|.++|++++|+......+|.+++|.+++.+ +...+|++.+++.+++.++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999998765 445677777777777777777778864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=112.92 Aligned_cols=237 Identities=14% Similarity=0.021 Sum_probs=152.8
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (456)
+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-+...++.+++++ +-..++++.++++|++.|
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHH
Confidence 4544445578999999999999999999999999999999999999999999999999886 445689999999999999
Q ss_pred hhhcccccccceee-eec----cCCCCchhHHHHHH-HHHHHHHHHHHHHhccc------cchHHHHHhHHHHHHHHHHh
Q 012803 139 YGMGLLSYVVPVYI-AEI----TPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 139 ~~~~~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~ 206 (456)
++.+..+.+-.++. .|. +|++..+..++... ...++-.+++.+++..+ |-..+|.....+.+++.+..
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 99999888877655 343 22222233333222 22233334444444443 34778888887777765555
Q ss_pred h-ccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHh
Q 012803 207 C-FIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQF 285 (456)
Q Consensus 207 ~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (456)
. .-+|+.... .+.. + ..+..+..++.++++++...+-++ ..+...
T Consensus 213 ~~~W~ENyg~~---~~~~-----------------~-----------~~~~~~~a~~~i~~d~ril~LG~~---qslFE~ 258 (354)
T PF05631_consen 213 LKTWPENYGDT---SSSS-----------------S-----------LSGSFREAWRAILSDPRILLLGLI---QSLFEG 258 (354)
T ss_pred HhcccccCCCc---cccc-----------------c-----------hHHHHHHHHHHHHcCchhHHHHHH---HHHHHH
Confidence 4 345543100 0000 0 000111223445555655444443 333444
Q ss_pred ccchhhHHhHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 012803 286 GGVNGIAFYASSIFIS-AGFSGSIGMIAMVVIQIPMTLLGVLLMDK 330 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 330 (456)
..+.....|.|.+-.. .....++++....+..++|+.+..++..+
T Consensus 259 smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 259 SMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555666655422 24456788998999999999888665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-14 Score=135.50 Aligned_cols=146 Identities=13% Similarity=0.072 Sum_probs=123.2
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccc
Q 012803 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV 147 (456)
Q Consensus 68 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 147 (456)
+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999999999999899999999999999999999998887777
Q ss_pred cceeeeeccCCCCchhHHHH-HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCCCh
Q 012803 148 VPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP 213 (456)
Q Consensus 148 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~~p 213 (456)
...++.|.+|++.|+...+. ++....+|.++++.+.+++ ||+..|.+.+++.++..+.. +.++++|
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88899999999988877655 5677888999998888776 99999998887776644443 4445443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=128.49 Aligned_cols=142 Identities=19% Similarity=0.118 Sum_probs=121.7
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHh
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGY 139 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~ 139 (456)
.+.+.+++|.+..+.+++.+.+.++..+++++.|++.||+|||+.+..+.++.+++.++..+.++. ..+++..++.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF 307 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence 344567889999999999999999999999999999999999999999999998888887777643 334566788888
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL 203 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~ 203 (456)
+.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|++.+++.+++.
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 88887777788899999999999999999999999999999988766 89999988887766543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=130.93 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHhhhccccccc
Q 012803 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK----AAWWLDLGRLLVGYGMGLLSYVV 148 (456)
Q Consensus 73 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~ 148 (456)
.++.+...++..++..++.++.|+++||+|+|+++..+.++.+++..+..... +++.+++.+++.|++.+...+..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999988877666632 24567788999999999888888
Q ss_pred ceeeeeccCCCCchhHHHHHH-HHHHHHHHHHHHHhccc----------cchHHHHHhHHHHHHHHH-HhhccCCCh
Q 012803 149 PVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI-GLCFIPESP 213 (456)
Q Consensus 149 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l----------~w~~~f~~~~~~~l~~~~-~~~~~~~~p 213 (456)
..++.|++|+++|+++.++.+ ...++|..+||++++.+ ||+..|++.++..++..+ ..++++|+.
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 899999999999999999997 67889999999998765 389999988877766544 446667653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-13 Score=129.73 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=126.4
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhh
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM 141 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (456)
.|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.
T Consensus 243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 322 (406)
T PRK11551 243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFV 322 (406)
T ss_pred HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 45567778999999999999999999999999999999999999998887777777777777788888888888899888
Q ss_pred cccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHhhccCCC
Q 012803 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCFIPES 212 (456)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~~~~~~~ 212 (456)
+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+ +|...++......+++.+..+++.++
T Consensus 323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777888888999999999999999999999999999999998877 45666666666666555555444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-13 Score=124.21 Aligned_cols=146 Identities=18% Similarity=0.248 Sum_probs=123.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
+.+++|.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999988888888888999999999999999998888777666666667788888888999999998888
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCC
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE 211 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~ 211 (456)
.+....++.|..|+ +++++.++++....+|..++|.+++.+ ||+..|++.++..+++.+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888888898875 467999999999999999999988776 8999999988888887777666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=125.62 Aligned_cols=146 Identities=15% Similarity=0.256 Sum_probs=122.7
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+..
T Consensus 242 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 319 (399)
T PRK05122 242 YYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV 319 (399)
T ss_pred HHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence 3344555 34566778888999999999999999999999999999988888888888888888889999999999988
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCC
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES 212 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~ 212 (456)
.+.....+.|.+|+++|+++.++++....+|..+++.+.+.+ ||++.|++.+...+++.+..++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 887777788999999999999999999999988888777666 89999999888877776666555544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=123.45 Aligned_cols=152 Identities=22% Similarity=0.381 Sum_probs=136.5
Q ss_pred ecccccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchH-HHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 012803 58 SSPAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG-TMGFSDIVCIIGWVIIVFSKAAWWLDLGRL 135 (456)
Q Consensus 58 ~~~~~~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 135 (456)
.....|.+.++ +|.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+.+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (352)
T cd06174 194 LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273 (352)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34455555555 4899999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
+.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+ +|+..+++.+++.++..+..+++
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 999999999999999999999999999999999999999999999998776 89999999998888876665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=122.33 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=126.0
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhh
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYG 140 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (456)
..|...+|+|.++.+.|++.+...++..+..++.+++.||+|+|+.+.++.+..++..++.+++++.+.+++.++++|+.
T Consensus 227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 34445577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeeeccCCCCchhHHHHHH-HHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhh
Q 012803 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~ 207 (456)
.+...+....++.+. |+++|++..++++ ...++|..+++.+++.+ |+ ..|+..+.+.+++.+...
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8889999999986 56788999999998887 54 456666666666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=122.73 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=121.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
..++.+.+ +.++..+.+.++..+++++.|++.||+|+||.+..+..+.+++.++..+.++.+.+++..++.|++.+..
T Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 319 (392)
T PRK12382 242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI 319 (392)
T ss_pred HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence 44455554 3566677788888999999999999999999999999999998888888888888889999999999888
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.+...+.+.|.+|+++|+++.++++....+|..++|.+.+.+ ||+..|.+.+.+.++..+..++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 888888888999999999999999999999999999888876 8999999988887776655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.6e-13 Score=126.84 Aligned_cols=144 Identities=12% Similarity=0.095 Sum_probs=119.5
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc--cCchHHHHH--HHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY--IGRRGTMGF--SDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr--~G~r~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
.+|.+.+++|.+..+.+++.+...++..+++++.|+++|| +++|+...+ +.++.+++.++..+.++++.+++.+++
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~ 342 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF 342 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 4455667789999999999999999999999999999998 344443333 344445555666778899999999999
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHH
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~ 204 (456)
.|++.+...+...+++.|.+|++++++..++++....+|..+||.+++.+ +|++.|++.+++.+++.+
T Consensus 343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999988888899999999999999999999999999999999999876 599999988877665443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=119.29 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=114.6
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHH
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLG 347 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 347 (456)
+.++.+.+..++...........++.|+.+.++.+....++......++.+++.+..|+++||+|||+.+..+.++.+++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~ 86 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 34455555555555544444444555554433333334457777777888999999999999999999998888877777
Q ss_pred HHHHHHHHHHH------HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 012803 348 CLLAALSFLFQ------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFA 421 (456)
Q Consensus 348 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~ 421 (456)
.+.+.+..... .+.+.......+....+..|..|+++|+++.|+.+...++|.+++|.+.+.+.+.+....++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~ 166 (395)
T PRK10054 87 FIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWL 166 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH
Confidence 76665432111 111112122345566778899999999999999999999999999999999887666666666
Q ss_pred HHHHHHHHHHHHHhcccC
Q 012803 422 FSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~ 439 (456)
.+.+.++..++..+..++
T Consensus 167 ~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555555544444443433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=117.34 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=118.8
Q ss_pred ccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhh
Q 012803 62 QSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM 141 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (456)
+|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+++..+..+..++.+... + ........++.|++.
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~ 299 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAG 299 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999999999999999888888777665443 2 233445677888877
Q ss_pred cccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
....|...+.+.|..|+++++...+......++|..++|.+++.+ +|++.|.+.+.+.++.....+..
T Consensus 300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 777888888899999888888888888888999999999998877 89999998888777665555544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-12 Score=118.26 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=122.2
Q ss_pred ccccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Q 012803 61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (456)
Q Consensus 61 ~~~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (456)
..|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||++||+.+.....+..+...+....++.+.+.+..++.|+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 306 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGF 306 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34434 46789999999999999999999999999999999999999988888777777777777888777778888999
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCC
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPE 211 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~ 211 (456)
+.+...+...++..|..| +++++..+.......+|..++|.+.+.+ ||+..+++.+++.+++.+....+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 307 FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 888777777777777665 4467788888888899999999988776 8999998888877776655555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=123.91 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeec
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (456)
.+.+.+.+.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 46667778888899999999999999999999999988888888888888888899999999999999888888888888
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 156 TPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.|+++|++.+++......+|..+||.+++.+ ||++.|++.+++.++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876 8999999988887776555433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=117.38 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=128.3
Q ss_pred cccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Q 012803 61 AQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (456)
Q Consensus 61 ~~~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (456)
..|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|+
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY 324 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 34545555 89999999999999999999999999999999888888888888888888888888888888888999999
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHH-HHHHhhccCCCh
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLIGLCFIPESP 213 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~-~~~~~~~~~~~p 213 (456)
+.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+ |++..++..+...++ +++....++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 88877777788899999999999999999999999999999988877 677777776655544 555556666654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-10 Score=104.57 Aligned_cols=150 Identities=16% Similarity=0.247 Sum_probs=123.5
Q ss_pred ccccc-cCCChhhHH-HHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhh
Q 012803 64 GITND-LGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGM 141 (456)
Q Consensus 64 ~i~~~-~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (456)
.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++.+.+-+..++-|++.
T Consensus 29 yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~ 108 (412)
T PF01770_consen 29 YLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT 108 (412)
T ss_pred HHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 35554 789888864 5667777778888899999999999999999999999999999999999999999999999987
Q ss_pred cccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc------cchHHHHHhHHHHHHHHHHhhccCCChh
Q 012803 142 GLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPR 214 (456)
Q Consensus 142 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~~~~~~~p~ 214 (456)
+. ..+-.+++-...|+++-.++.+...++.-+|..++.++|..+ +++...++......++.+..+++|..++
T Consensus 109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 75 667778888888888888999999998888988888888766 5566666666656666667778887665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=118.18 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=111.9
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH---h-chhhHHHHHHHHHHh
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---S-KAAWWLDLGRLLVGY 139 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 139 (456)
.+.+++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 356778888877666666677777888999999999999999998887766555443322 2 234444556677788
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHH-HHHHHHHHHHHHHhccc------cchHHHHHhHHHHHHHHHHhhccCCC
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPES 212 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~~~~~~~ 212 (456)
+.+...+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+ +|+..+...++..+++.+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 877777788899999999999988888854 44557888888887765 48888888777777777666666664
Q ss_pred h
Q 012803 213 P 213 (456)
Q Consensus 213 p 213 (456)
+
T Consensus 436 ~ 436 (438)
T PRK09952 436 Q 436 (438)
T ss_pred c
Confidence 3
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=116.00 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=113.8
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHH-HHHHhchhhHHHHHHHHHHhhhc
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV-IIVFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~ 142 (456)
.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+... +..+..++.. +....++.+.+.+..++.|++.+
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~ 309 (390)
T PRK03545 231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIM 309 (390)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 356668999999999999999999999999999999999887544 4444444433 34556788888888999999887
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhh
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~ 207 (456)
...+...+.+.+..| ++|+++++++.....+|..+||.+++.+ |++..|+..+.+.+++.+...
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 777777777778766 5789999999988888988888888776 899999998888877655543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-12 Score=120.42 Aligned_cols=140 Identities=20% Similarity=0.168 Sum_probs=109.4
Q ss_pred ccccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHH--HHHHH--hchhhHHHHHHH
Q 012803 61 AQSGI-TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW--VIIVF--SKAAWWLDLGRL 135 (456)
Q Consensus 61 ~~~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~ 135 (456)
..|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..+
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL 320 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34444 47789999999999999999999999999999999999998876555444433 22222 246777778888
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHH-HHHHHHHHHHHHHHHhccc----c-chHHHHHhHHHHH
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCL 200 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l----~-w~~~f~~~~~~~l 200 (456)
+.|++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+ | |++.++......+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 321 GLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99998888888999999999999999999887 4556677888888888776 5 8877766655444
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=116.94 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=104.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchH--HHH------HHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG--TMG------FSDIVCIIGWVIIVFSKAAWWLDLGRLL 136 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l 136 (456)
+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..+........++.+..+...++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVAL 321 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999996 111 1111111111122222344444444444
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c-chHHHHHhHHHHHHHHHHh
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~-w~~~f~~~~~~~l~~~~~~ 206 (456)
.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ | |+..|++.++..+++.+..
T Consensus 322 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 322 GFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 455544 7788889999999999999999999999999999999998876 6 9999988887776655444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=117.67 Aligned_cols=155 Identities=15% Similarity=0.043 Sum_probs=118.7
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh-----c------hh
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----K------AA 127 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~------~~ 127 (456)
....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++. + +.
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN 383 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence 344566778889999889999999999999999999999999999999999988888877776621 1 22
Q ss_pred hHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH
Q 012803 128 WWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL 203 (456)
Q Consensus 128 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~ 203 (456)
..+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+ +|++.|++.++++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 384 VAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGL 463 (481)
T ss_pred HHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHH
Confidence 22333333333322334466677789999999999999999999999999999887765 79999998888877765
Q ss_pred HHh-hccCCCh
Q 012803 204 IGL-CFIPESP 213 (456)
Q Consensus 204 ~~~-~~~~~~p 213 (456)
+.. ++.||++
T Consensus 464 i~~~~~~~~~~ 474 (481)
T TIGR00879 464 IFVYFFLPETK 474 (481)
T ss_pred HHHheecccCC
Confidence 554 4556643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-11 Score=111.67 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=115.6
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHh
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGY 139 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~ 139 (456)
..|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|+
T Consensus 227 ~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~ 304 (393)
T PRK09705 227 WLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGL 304 (393)
T ss_pred HHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHH
Confidence 34445566899999999999999999999999999999999999999988888777766554333 22222 2345688
Q ss_pred hhcccccccceeeeeccC-CCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHH-hhccCCC
Q 012803 140 GMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIG-LCFIPES 212 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~-~~~~~~~ 212 (456)
+.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++..++..+. ..+.||+
T Consensus 305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 877777777666667764 56789999999999999999999988877 4778888877776665444 4556665
Q ss_pred h
Q 012803 213 P 213 (456)
Q Consensus 213 p 213 (456)
+
T Consensus 385 ~ 385 (393)
T PRK09705 385 F 385 (393)
T ss_pred c
Confidence 4
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=117.83 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=108.1
Q ss_pred ccc-ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHH--HHHhchhhHHHHHHHHH
Q 012803 61 AQS-GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI--IVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 61 ~~~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~ 137 (456)
.+| .+.+++|++..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+ ....++.+.+.+.+++.
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL 359 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344 356789999999999999999999999999999999999998876655444443322 22345666677888888
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH-HHHHHHHHhccc----------------cchHHHHHhHHHHH
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----------------NWRILALIGTIPCL 200 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l----------------~w~~~f~~~~~~~l 200 (456)
|+..............|.+|+++|+++.|+.+...++ |..++|.+.+.+ +|+..|++..+..+
T Consensus 360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~ 439 (467)
T PRK09556 360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI 439 (467)
T ss_pred HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence 8654332222234566999999999999999888776 656666554333 59999988877777
Q ss_pred HHHHHhhc
Q 012803 201 VQLIGLCF 208 (456)
Q Consensus 201 ~~~~~~~~ 208 (456)
++.+..++
T Consensus 440 ~~~~~~~~ 447 (467)
T PRK09556 440 GCICLMAI 447 (467)
T ss_pred HHHHHHHH
Confidence 76555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=111.28 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=109.1
Q ss_pred hhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH------HH
Q 012803 290 GIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------VY 360 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 360 (456)
....+.+.+.++.+.+. +.......++..++.++.|++.||+|||+.+..+.++.+++.++........ ++
T Consensus 41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 120 (434)
T PRK11663 41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL 120 (434)
T ss_pred hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666666666654 3677778889999999999999999999999999888888877765542111 22
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
.+.......+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+ .++...+++.+++.++.+++..+.+++
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2333333456667888999999999999999999999999999999999988 444455555555545444444444444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=111.01 Aligned_cols=169 Identities=10% Similarity=0.077 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHH
Q 012803 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCL 349 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 349 (456)
..+..++.+...+.-...+....+.+.++.+.+. ++......++..++.+..|++.||+|||+.+..+.++..++..
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3333444444333333444444554445555443 4677778888899999999999999999999999888888877
Q ss_pred HHHHH------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-------hhhh
Q 012803 350 LAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSST 416 (456)
Q Consensus 350 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~ 416 (456)
+..+. ....++.+....+..+....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+ .++.
T Consensus 89 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 89 ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 77653 2223455555555567777788999999999999999999999999999999998874 2455
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 417 GTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
..+++.+...++...+.++++||++
T Consensus 169 ~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCc
Confidence 5666656665665566666666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-09 Score=99.46 Aligned_cols=299 Identities=16% Similarity=0.140 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCC
Q 012803 80 GSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN 159 (456)
Q Consensus 80 ~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 159 (456)
.++-+..+.+++++.+.+.|+.|+|+.++++........+..-+- |-+-++.+-.+.|+|.+..+...-.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 777888888999999999999999999999999998877766554 4566889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc------------cch-HH----------HHHhHHH---HHHHHHHhhccCCCh
Q 012803 160 LRGGFTTVHQLMICIGVSMTYLIGAFL------------NWR-IL----------ALIGTIP---CLVQLIGLCFIPESP 213 (456)
Q Consensus 160 ~r~~~~~~~~~~~~~G~~~~~~l~~~l------------~w~-~~----------f~~~~~~---~l~~~~~~~~~~~~p 213 (456)
.+.+..++..+....+.++|..+-..+ +-+ +. ..+.+++ ..+.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999998888888888886654333 121 11 1111111 111122222223211
Q ss_pred hHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHH
Q 012803 214 RWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAF 293 (456)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (456)
. ..++ +.. ++...+......+++++++...+....+...+.........|.
T Consensus 215 ~-~~~~------------------------~~~----~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt 265 (461)
T KOG3098|consen 215 V-VNCK------------------------SSS----ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPT 265 (461)
T ss_pred h-hhhh------------------------hhc----cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccch
Confidence 0 0000 000 0000011112233444555544444444443332222222222
Q ss_pred hHHHHHHHcCCCc----hHHHHHHHHHHHHHHHHHHHHHhh---cCCcchhhhhhHHHHHHHHHHHHHH-----------
Q 012803 294 YASSIFISAGFSG----SIGMIAMVVIQIPMTLLGVLLMDK---SGRRPLLLVSAAGTCLGCLLAALSF----------- 355 (456)
Q Consensus 294 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~----------- 355 (456)
....... .+.+. .......+++.+.+....+.+.+| +|+++.+..+..+..++.++.-...
T Consensus 266 ~i~ft~~-~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 266 CISFTRK-LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhhh-ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 2222111 12222 255566667777777777777655 5788888888777776666554321
Q ss_pred -------------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 356 -------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 356 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
...++.+..-.......+.++.+.+| ++|.++.++.-.-..++..++-+..+..
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred cccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 11122222222334555677777884 7788888888888888777766555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=112.01 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=117.1
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhc
Q 012803 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 63 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (456)
|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.+..+++++.+.+++..++.|++.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred ccccccceeeeeccCCCCchhHHHHHH-HHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQ-LMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL 206 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~ 206 (456)
...+....++.+. +++++++..+... ...++|..+||.+++.+ |+ ..|+..+.+.++++...
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 8888888888886 5666788888876 55677778888888877 55 45666666655544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=113.98 Aligned_cols=153 Identities=17% Similarity=0.086 Sum_probs=113.5
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hh-h-HHHHHHHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AA-W-WLDLGRLL 136 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~-~-~l~~~r~l 136 (456)
..|.+.++.|.+.....+......+...++.++.|+++||+|||+.++.+.++.+++.++.+... +. + ....+.++
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 372 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 372 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 44667788898887778888888889999999999999999999999999999988887776432 21 1 22233344
Q ss_pred HHhhhcc-cccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhc----------cccchHHHHHhHHHHHHHHHH
Q 012803 137 VGYGMGL-LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA----------FLNWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 137 ~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~----------~l~w~~~f~~~~~~~l~~~~~ 205 (456)
.+.+.+. ..+...+++.|.+|+++|++++++......+|..+++.+.. ..+|++.|++.++.+++..+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 373 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHH
Confidence 4444443 23667889999999999999999999988888887743332 237888898888776665554
Q ss_pred h-hccCCCh
Q 012803 206 L-CFIPESP 213 (456)
Q Consensus 206 ~-~~~~~~p 213 (456)
. ++.||++
T Consensus 453 ~~~~~~e~~ 461 (479)
T PRK10077 453 MWKFVPETK 461 (479)
T ss_pred HHhccccCC
Confidence 4 4566653
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-12 Score=122.10 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=107.4
Q ss_pred ccccccc-cccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh--chhhHHHHHHHH
Q 012803 60 PAQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--KAAWWLDLGRLL 136 (456)
Q Consensus 60 ~~~~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l 136 (456)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..+..+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3455555 6899999999999999999999999999999999999999988877766665544333 344444455555
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHH
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~ 198 (456)
.+.......+...+++.|.+|+++|++.+++......+|..++|.+++.+ ||+..+...+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 54433334556667889999999999999999999999999999888776 788777655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=109.18 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHH
Q 012803 272 SLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGC 348 (456)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 348 (456)
+......+.++.............+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3333333433333333444555555555555554 3477778888999999999999999999999998888877777
Q ss_pred HHHHHHH------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHH
Q 012803 349 LLAALSF------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS--TGTFF 420 (456)
Q Consensus 349 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~--~~~~~ 420 (456)
++..... ...++.+.......+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+ +...+
T Consensus 92 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 92 LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 6665431 122344444444556677888999999999999999999999999999999998887432 33333
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 012803 421 AFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~ 440 (456)
.+.++..+..++.....||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 172 FISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33333333334444445554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=109.99 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHH
Q 012803 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA 352 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 352 (456)
.+...++.....+.....++.|+....+.+....++......+...+.+++.|+++||+|||+.+..+..+.+++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 34444444454443444444444433333333344666666777777889999999999999999999888888887765
Q ss_pred HHH------HHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012803 353 LSF------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426 (456)
Q Consensus 353 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 426 (456)
... ....+.+.......+...+++.|..|+++|+++.|+.+...++|..+||.+.+++.+.+....+++.+..+
T Consensus 95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~ 174 (400)
T PRK11646 95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLF 174 (400)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 531 11122232222234556677889999999999999999999999999999999998766656666666555
Q ss_pred HHHHHHHHhcccC
Q 012803 427 SLTVLFVAKLVPE 439 (456)
Q Consensus 427 ~~~~~~~~~~~~~ 439 (456)
++..++..+..++
T Consensus 175 ~~~~i~~~~~~~~ 187 (400)
T PRK11646 175 VLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHhCCc
Confidence 5554444444454
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=104.67 Aligned_cols=168 Identities=22% Similarity=0.129 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHH
Q 012803 271 HSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLG 347 (456)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 347 (456)
+...+...+..+..........-.++++-++.+.+.. ...+.++.+..+++++...+.||+.||+++.....++.++
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 3334444444444444556666677777777777654 8889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH------HHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHH
Q 012803 348 CLLAALSFLF------QVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFF 420 (456)
Q Consensus 348 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~ 420 (456)
-++..+...+ .+..+.....+.+...+...++.|+++|+++.+++.....++..+|.+++.++.| .++...|+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 8887775322 2566666677788888999999999999999999999999999999999999999 77888899
Q ss_pred HHHHHHHHHHHHHHhccc
Q 012803 421 AFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ 438 (456)
.++.+.++..+..+..+|
T Consensus 172 ~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 172 AIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999998888888888888
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=110.63 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=113.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHH-HHHHHHHHHHHHHHH-----hchhhHHHHHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMG-FSDIVCIIGWVIIVF-----SKAAWWLDLGR 134 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r 134 (456)
..|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++.+.+++..
T Consensus 244 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR00897 244 FLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIA 323 (402)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 445566789999999999999999999999999999999999988764 333444443333332 24566777888
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+++.+ ||+..+++.++..++..+...++
T Consensus 324 ~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 324 IALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8889887765443 45566765 46899999999999999999999988776 89999998888877766655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=108.16 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=107.0
Q ss_pred HHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------HHHHHHHhc
Q 012803 295 ASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------FQVYTGSFS 365 (456)
Q Consensus 295 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 365 (456)
.+.+.++.+.+ .++......++..++.++.|++.||+|||+.+..+..+.+++.+....... ..++.+...
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 107 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA 107 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence 34444444544 347777888889999999999999999999999988888877776655421 112333333
Q ss_pred ccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 366 LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
....+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+. ++...++..+.+.++..++.++..||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334566678889999999999999999999999999999999998884 4555566666665655555555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=106.45 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=106.8
Q ss_pred hHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHh
Q 012803 294 YASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSF 364 (456)
Q Consensus 294 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 364 (456)
..+.+.++.+.+. +.......++..+++++.|++.||+|||+.+..+.++.+++.++..... ....+.+..
T Consensus 42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 121 (394)
T PRK10213 42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLA 121 (394)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh
Confidence 3455555656554 3566677888889999999999999999999999999888777665531 122344444
Q ss_pred cccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 365 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
.....+...+++.|.+|+++|+++.++.....++|..++|.+.+.+.+ .++...++..+.+.++..+......|+.
T Consensus 122 ~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 122 LGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred hHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 444567777888999999999999999999999999999999999988 4555555555554444433333334543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=109.47 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHhcccccccceeeecccCCcc
Q 012803 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS---FLFQVYTGSFSLGMGGIPWVIMSEVFPIN 383 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (456)
++....+.+...+..++.|+++||+|||+++..+..+.+++.+.+... ....++.+.......|...+++.|.+|++
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~ 120 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGIGAAAYSPAKYGILTELLPGE 120 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 467777888899999999999999999999999988877766554332 12224455555566788889999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 384 MKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 384 ~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
+|++++|+.+....++..+||.+.|.+.+......+.+.+... +.+.+....+++.
T Consensus 121 ~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~ 176 (393)
T PRK11195 121 KLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY-LLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCC
Confidence 9999999999999999999999999999865433333333322 2333344455543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=109.61 Aligned_cols=153 Identities=22% Similarity=0.197 Sum_probs=109.7
Q ss_pred chhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHH
Q 012803 288 VNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQ 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~ 358 (456)
......+.+.+.++.+.+. +.......++.+++.++.|+++||+|||+.+..+..+.+++.+++.... ...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILR 112 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 3444555666665555543 3666777788899999999999999999999988888777776665431 122
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcc
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
++.+.......+...++..|.+|+++|+++.|+.+....+|..++|.+.+.+.+. +....+++.+.+..+...+.....
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence 3334444445677788899999999999999999999999999999999999884 444445555445555555555555
Q ss_pred cCC
Q 012803 438 PET 440 (456)
Q Consensus 438 ~~~ 440 (456)
++.
T Consensus 193 ~~~ 195 (398)
T TIGR00895 193 PES 195 (398)
T ss_pred CCC
Confidence 554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=109.92 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhhHHHHHHH
Q 012803 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAAGTCLGC 348 (456)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 348 (456)
++..........+.+++....++.|+...++.+....+...........++.+++|+++||+ |||+.+..+.++.+++.
T Consensus 11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ 90 (493)
T PRK15462 11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH 90 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 33344444444455555555666666554333333344667777778888999999999999 99999999999888887
Q ss_pred HHHHHHH------HHHHHHHHhccc-ccccceeeecccCCcc--chhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhH
Q 012803 349 LLAALSF------LFQVYTGSFSLG-MGGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGT 418 (456)
Q Consensus 349 ~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~ 418 (456)
+++.... ...........+ ..+...+++.|.+|++ +|+++.++.+...++|+.++|.+.+++.+ .++...
T Consensus 91 lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~ 170 (493)
T PRK15462 91 VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMG 170 (493)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Confidence 6654321 111112222223 3455667889999875 69999999999999999999999999987 444445
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012803 419 FFAFSAICSLTVLFVAK 435 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (456)
+...++ ..+.+++.+.
T Consensus 171 F~iaai-gm~l~li~~~ 186 (493)
T PRK15462 171 FGLAAV-GMIAGLVIFL 186 (493)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 554433 4444444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=108.12 Aligned_cols=149 Identities=10% Similarity=0.162 Sum_probs=113.4
Q ss_pred ccccccCCChhhHHHHHH-HHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH---HHh-chhhHHHHHHHHHH
Q 012803 64 GITNDLGLSVAEYSLFGS-ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGRLLVG 138 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G 138 (456)
.+.+++|.+.++.+++.. ...++..++.++.|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+.+.-+++.
T Consensus 248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~ 327 (491)
T PRK11010 248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN 327 (491)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 356779999999999974 6678999999999999999999998877666555544332 232 35555555566655
Q ss_pred hhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhccCCC
Q 012803 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFIPES 212 (456)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~~~~ 212 (456)
+..|...+...++..+..+++.+++..++.+...++|..+++.+++.+ ||+..|.+.+++++++++....++++
T Consensus 328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555566677888888888899999999999999988777777665 89999999888888877666655543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=107.05 Aligned_cols=155 Identities=8% Similarity=-0.031 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH
Q 012803 274 IVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL 353 (456)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 353 (456)
....++..+........++.|..+ .+......+.......++.+++.++.|+++||+|||+.+..+..+.+++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 333444444433334455555543 2222233457778888899999999999999999999999888777666655443
Q ss_pred HH-----H------HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH
Q 012803 354 SF-----L------FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFA 421 (456)
Q Consensus 354 ~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~ 421 (456)
.. . ...+.+.......+...++..|..|+++|+++.|+.+....+|..++|.+.+.+.+. +....++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 32 1 112333333334566778899999999999999999999999999999999999884 44444444
Q ss_pred HHHHHHHH
Q 012803 422 FSAICSLT 429 (456)
Q Consensus 422 ~~~~~~~~ 429 (456)
.+...++.
T Consensus 164 ~~~~~~~~ 171 (365)
T TIGR00900 164 DAVGFAIS 171 (365)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=108.51 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=101.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecc
Q 012803 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSE 378 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 378 (456)
..++......++..++.++.|+++||+|||+.+..+.++.+++.++..+. ....++.+.......+....++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~ 112 (352)
T PF07690_consen 33 QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIAD 112 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccc
Confidence 34477888888999999999999999999999999998888884444431 122244444445556778889999
Q ss_pred cCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 379 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 379 ~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.+|+++|+++.++.+....+|..++|.+.+.+.+ .+....+++.+.+.++..++...+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 113 WFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp CCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred cchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 9999999999999999999999999999999986 45556667777666666554334443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=110.59 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHhHHHH--HHHcCCCchHHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhhhhHHHHH
Q 012803 270 AHSLIVGVGLMVLQQFGGVNGIAFYASSI--FISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCL 346 (456)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~ 346 (456)
.+.+....++..+.++.....++.|+... ++.+....+.......++..++.+++|+++|| +|||+.+..+.++.++
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33444444444455555555566665433 22233344577888888999999999999999 8999999999999988
Q ss_pred HHHHHHHHHH------HHHHHHHhcccccccceeeecccCCcc---chhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhh
Q 012803 347 GCLLAALSFL------FQVYTGSFSLGMGGIPWVIMSEVFPIN---MKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SST 416 (456)
Q Consensus 347 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~ 416 (456)
+.+++..... ...+.+.+.....+...+...|.+|++ +|+++.++.+...++|..+||.+.+++.+. ++.
T Consensus 92 g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~ 171 (475)
T TIGR00924 92 GHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH 171 (475)
T ss_pred HHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 8877765421 112233333334566777888888765 488899999999999999999999999884 544
Q ss_pred hHHHHHHHH
Q 012803 417 GTFFAFSAI 425 (456)
Q Consensus 417 ~~~~~~~~~ 425 (456)
..+...+..
T Consensus 172 ~~f~~~~~~ 180 (475)
T TIGR00924 172 VGFNLAAVG 180 (475)
T ss_pred HHHHHHHHH
Confidence 455554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=105.65 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=107.4
Q ss_pred HHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------HHHHHH
Q 012803 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------FQVYTG 362 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 362 (456)
....+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+.+++...+..... ...+.+
T Consensus 23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 102 (392)
T PRK10473 23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG 102 (392)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3455665566555544 5666777788889999999999999999999888888777776654311 112233
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
.......+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+ .++...+++.+.+..+..++.....+|++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33333345667788999999999999999999999999999999988876 44445566666666666555555555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-10 Score=106.16 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH----------HHHHHHHHHhcccccccceee
Q 012803 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS----------FLFQVYTGSFSLGMGGIPWVI 375 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 375 (456)
.++......++..++.++.|+++||+|||+.+..+.++.+++.+.+... .....+.+.+.....+.....
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 142 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT 142 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3477778888999999999999999999999888887877776655431 111122333333334555667
Q ss_pred ecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 376 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 376 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
+.|.+|+++|+++.|+.+....+|+.++|.+.+...+ .++...+++.+.+.++..++.++..+|+
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7889999999999999999999999999988876554 3445556666666666555555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.6e-11 Score=110.96 Aligned_cols=135 Identities=10% Similarity=0.074 Sum_probs=112.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccc
Q 012803 70 GLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVP 149 (456)
Q Consensus 70 ~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 149 (456)
+.+..+.|.+.+...+...++.++.|++.||+|+|+.+.++.++.++...+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999998888878889999999999999998776655566
Q ss_pred eeeeeccCCCCchhHHHH-HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHH
Q 012803 150 VYIAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 150 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~ 204 (456)
.+..+..+++.++...+. .+....+|..+++.+++++ ||+..|.+.+++.++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 667777777777776655 5678888999998888776 899999998887766443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=108.13 Aligned_cols=149 Identities=24% Similarity=0.276 Sum_probs=133.0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCch--HHHHHHHHHHHHHHHHHHH--------hchhhHHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVF--------SKAAWWLDLG 133 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~ 133 (456)
...+++|++..+...+.-...+...++++++|++.||+|.| +++..+++++.+..+...+ .++-+.+.+.
T Consensus 307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 35668999999999999999999999999999999999999 9999999888776666665 6788889999
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
-++.|+..|...+..-++.+|..|+++.+..+|++....-....+||++-+.+ +-|+.+....++.++++++.++
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998877 5788888888888888777777
Q ss_pred cCCC
Q 012803 209 IPES 212 (456)
Q Consensus 209 ~~~~ 212 (456)
++.+
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 7654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=110.98 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=112.3
Q ss_pred hhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHH
Q 012803 289 NGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQV 359 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 359 (456)
.......+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+..+.+++.++.... .....
T Consensus 19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (485)
T TIGR00711 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRV 98 (485)
T ss_pred HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34445555555555544 3478888899999999999999999999999999988888877776543 22224
Q ss_pred HHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 360 YTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
+.+.......+...+++.|.+|+++|+++.++......+|..++|.+.+++.+ .++...++..+.+.++..++..+..+
T Consensus 99 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 99 IQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 44444455567778889999999999999999999999999999999999988 44455555555555555444455555
Q ss_pred CC
Q 012803 439 ET 440 (456)
Q Consensus 439 ~~ 440 (456)
++
T Consensus 179 ~~ 180 (485)
T TIGR00711 179 RD 180 (485)
T ss_pred Cc
Confidence 43
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=97.02 Aligned_cols=153 Identities=17% Similarity=0.295 Sum_probs=117.2
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh-------chhhHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------KAAWWLD 131 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 131 (456)
+..-|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.||+|+|.++.+|.+...+|..+..++ .++|.+.
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 3445569999999999999999999999987 5889999999999999999999999998877653 3678888
Q ss_pred HHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---c-chHHHHHhHHHHHHHHHHhh
Q 012803 132 LGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---N-WRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 132 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~-w~~~f~~~~~~~l~~~~~~~ 207 (456)
+..++.|.+.+....+....-.+.|| ++||++.|+.-...+++..+-..+...+ + -+..+.+...+.++.++...
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~ 179 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMF 179 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhh
Confidence 88888888877666666666668887 4699999999999999988766665544 2 23333334444555555555
Q ss_pred ccCCCh
Q 012803 208 FIPESP 213 (456)
Q Consensus 208 ~~~~~p 213 (456)
+++..|
T Consensus 180 ~vr~~~ 185 (250)
T PF06813_consen 180 FVRPVP 185 (250)
T ss_pred heeccC
Confidence 555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=100.65 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=133.0
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHH
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 344 (456)
+.++..++..++.+..++..-..+..-.|.+.++.+.+-+ .+.+...+..-++..+.|.++||.+.|..+..+.++.
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 3444556666666666555556666667777777666544 7778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHH--HHHHhh-hh
Q 012803 345 CLGCLLAALSFLFQ------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF--NFLMKW-SS 415 (456)
Q Consensus 345 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~--g~l~~~-~~ 415 (456)
++..+++.+..... .+.+.+.....|.....+..-+|+++||+..++-|+..++|+.+.|++. +++.++ +.
T Consensus 105 ai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w 184 (448)
T COG2271 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGW 184 (448)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccch
Confidence 99999988763222 3344444444677778888899999999999999999999999999999 888774 55
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 416 TGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
...++.-+++.++.+++.++..|++.
T Consensus 185 ~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 185 RAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 56677777777777777777766543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=103.95 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=94.4
Q ss_pred HHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHH
Q 012803 292 AFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTG 362 (456)
Q Consensus 292 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 362 (456)
....+.+.++.+.+ .+.......++..++.++.|+++||+|||+.+..+.+..+++.+...... ....+.+
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 117 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVG 117 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444443 34677778889999999999999999999999999988888877665542 1223444
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSST 416 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~ 416 (456)
....+..+....++.|..|+++|+++.++......+|..+++.+.+.+.+..++
T Consensus 118 ~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w 171 (426)
T PRK12307 118 MGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW 171 (426)
T ss_pred HHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence 444445667778889999999999999999999999999999998888774333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=102.25 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=82.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-HHH------HHHHHhcccccccceeeec
Q 012803 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-LFQ------VYTGSFSLGMGGIPWVIMS 377 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~ 377 (456)
..++......++..++.++.|+++||+|||+.+..+.++.+++.+++.... ... ++.+.. .+.......++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 116 (366)
T TIGR00886 38 QLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWIS 116 (366)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHH
Confidence 344777888889999999999999999999999999888888877765543 211 223333 233344567788
Q ss_pred ccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 378 EVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 378 ~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
|.+|+++|+++.++.....++|..+++.+.+.+.+
T Consensus 117 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 117 FFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888776654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=106.77 Aligned_cols=153 Identities=16% Similarity=0.042 Sum_probs=108.3
Q ss_pred chhhHHhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHH
Q 012803 288 VNGIAFYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQ 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~ 358 (456)
.+.+..-.|.+.++.+.+ .++....+.++...+.+..|+++||+|||+.+..+..+.+++.+...... ...
T Consensus 22 ~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r 101 (495)
T PRK14995 22 ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATR 101 (495)
T ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555556665555543 34777778888888899999999999999999999999888887776541 122
Q ss_pred HHHHHhcccccccceeeeccc-CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhc
Q 012803 359 VYTGSFSLGMGGIPWVIMSEV-FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
.+.+....+..+.....+.+. .|+++|+++.|+......+|..+||.+.|.+.++ ++.+.+++...++++..++..+.
T Consensus 102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445445555454 4678999999999999999999999999999984 55555666555555555555555
Q ss_pred ccCC
Q 012803 437 VPET 440 (456)
Q Consensus 437 ~~~~ 440 (456)
.|+.
T Consensus 182 l~~~ 185 (495)
T PRK14995 182 VPRQ 185 (495)
T ss_pred CCCC
Confidence 5554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=110.42 Aligned_cols=146 Identities=17% Similarity=0.297 Sum_probs=127.2
Q ss_pred ccccccc-cccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 012803 60 PAQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (456)
Q Consensus 60 ~~~~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (456)
..+|.+. +++|.++...|++.+++.+|..++++..+++.+|+++++.+..+.++++++.+..+++++.+..++..++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3456554 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHH
Q 012803 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~ 205 (456)
++.........+.+.+..|++.|||+++++......+..+|..+.+.+ |-+..+.+.++..++..++
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999888888889999999999999999999988888888888777776 7777877776655554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=101.85 Aligned_cols=173 Identities=20% Similarity=0.186 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHH
Q 012803 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTC 345 (456)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 345 (456)
+.+...+...+..+........+....+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+....+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 89 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 333344444444433222222222334444455555433 56677788888999999999999999999988887777
Q ss_pred HHHHHHHHHHH------HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhH
Q 012803 346 LGCLLAALSFL------FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGT 418 (456)
Q Consensus 346 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~ 418 (456)
++.+....... ...+.+.......+...+...|.+|+++|.++.++......++..++|.+.+.+.+. ++...
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~ 169 (406)
T PRK15402 90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGM 169 (406)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence 77666554311 112222222223455667788999999999999999988889999999999998884 44555
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC
Q 012803 419 FFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
+++.+++.++..+..+...|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 170 FVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 66556655555554445556543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=107.54 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=99.9
Q ss_pred cccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc--CchHHH-HHHHHHHHHHHHHHHH--hchhhHHHHHH
Q 012803 61 AQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTM-GFSDIVCIIGWVIIVF--SKAAWWLDLGR 134 (456)
Q Consensus 61 ~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--G~r~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~~r 134 (456)
.+|. ++++.|.+..+.++....+.++..++.++.|+++||+ +||+.. .....+..++.+...+ .++.+...+..
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 4454 4455789999999999999999999999999999999 555433 2222333333332222 23444444555
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHH-HHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS-MTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
++.|.+..........+..|.+|+++||+++|+.+....+|.. ++|.+.+.+ ||+..|++.+..++++++....
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5555543222223334567999999999999999887777755 467776665 8999999888877776555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=104.57 Aligned_cols=150 Identities=21% Similarity=0.185 Sum_probs=105.4
Q ss_pred hhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHH
Q 012803 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVY 360 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 360 (456)
.+..+.+.+.++.+.+.. +......++..++.++.|+++||+|||+.+..+..+.+++.+..... .....+
T Consensus 28 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 107 (471)
T PRK10504 28 IVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVL 107 (471)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455666666565543 55666777888899999999999999999888877777666654443 112234
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
.+.+.....+...+++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+. ++...+.+......+..++.....++
T Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444444667778888999999999999999999999999999999999984 44445555444444444444444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=103.31 Aligned_cols=143 Identities=12% Similarity=-0.017 Sum_probs=107.4
Q ss_pred cccccccCCChhhHHHHHHHHHH-HHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH------hchhhHHHHHHH
Q 012803 63 SGITNDLGLSVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF------SKAAWWLDLGRL 135 (456)
Q Consensus 63 ~~i~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~ 135 (456)
+.+.+|.|+++++.|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+.... .++.+.+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 33556789999999999888764 66677899999999999999998887766443332221 123334445555
Q ss_pred HHHhhhcccccccceeeeeccCC-CCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHH
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~ 205 (456)
+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+ ||+..|+..+++.+++.+.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777766 7789999999999999999999998876 8888888887776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=109.66 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=106.8
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCch-------HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRR-------GTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLV 137 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 137 (456)
+.+++|.+..+.+.+.+.+.++..++.+++|+++||+||| ....+..++.++..++.+..++.+...+.-++.
T Consensus 279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~ 358 (476)
T PLN00028 279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF 358 (476)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999875 233333333444444455566666666566666
Q ss_pred HhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc---ccchHHHHHhHHHHHHHHHHhhccC
Q 012803 138 GYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF---LNWRILALIGTIPCLVQLIGLCFIP 210 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~---l~w~~~f~~~~~~~l~~~~~~~~~~ 210 (456)
+++.+...+...+++.+.. +++|+...++...+..+|..+++.+... .+|+..|++.+++.+++.+..++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 359 SIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 6665555555566666665 4679999999988888888888877542 2699999998888887776666654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=105.81 Aligned_cols=136 Identities=13% Similarity=0.025 Sum_probs=100.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHhcccccccceeeecc
Q 012803 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSFSLGMGGIPWVIMSE 378 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 378 (456)
+.++......++..++.++.|+++||+|||+.+..+..+.+++.++..... ...++.+.+.....+...+++.|
T Consensus 31 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 110 (379)
T TIGR00881 31 DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTK 110 (379)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHH
Confidence 345778888899999999999999999999999999888888777766542 12233444444456777889999
Q ss_pred cCCccchhhHhHHHHHHHHHHHHHHHH-HHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 379 VFPINMKGSAGSLVTLVSWLGSWIISF-TFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 379 ~~~~~~~~~~~g~~~~~~~~g~~i~~~-~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
.+|+++|+++.++.+....+|..++|. +.+.+.+ .++...++..+.+.++..++.+...+++
T Consensus 111 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 111 WFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 999999999999999999999999994 5555555 3444455555555555555555555543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.7e-10 Score=108.43 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=113.6
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchh--hHHHHHHHHHHhhhccc
Q 012803 67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAA--WWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 67 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~ 144 (456)
++++.+.. +......+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..
T Consensus 351 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (505)
T TIGR00898 351 GNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSA 427 (505)
T ss_pred cccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence 34444433 33344556677888899999999999999999999999988888877654 44555566677777777
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHhHHHHHHHHHHhhccCCCh
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--~w~~~f~~~~~~~l~~~~~~~~~~~~p 213 (456)
.+....+..|.+|++.|++++++.+....+|.+++|.+.+.. ++..++++.+...+++.+..+++||+.
T Consensus 428 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 428 FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 788889999999999999999999999999999999998732 566778888877777777777888864
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=105.22 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCC
Q 012803 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFP 381 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (456)
......-.+.++.-++.+++.+|+|+.+++..+..+..+=++.+... ....++-+.....++....+|++...|
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaP 489 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAP 489 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 44555556778888899999999999999999988888777776654 122355555556666777789999999
Q ss_pred ccchhhHhHHHHHHHH-HHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHh
Q 012803 382 INMKGSAGSLVTLVSW-LGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 382 ~~~~~~~~g~~~~~~~-~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
++.+.++.++...... +|-.+|++++|.+.+ .+....+.++++.|++..++...
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765 899999999999988 55566677777766665554443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=102.18 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=106.9
Q ss_pred HhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHH
Q 012803 293 FYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGS 363 (456)
Q Consensus 293 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 363 (456)
...+.+.++.+.+ .+.......++..++.++.|++.||+|||+.+..+..+.+++.++..... ....+.+.
T Consensus 24 ~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~ 103 (382)
T PRK10091 24 GVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGF 103 (382)
T ss_pred hChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 3444555555544 34778888999999999999999999999999999988888887766542 11133333
Q ss_pred hcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 364 FSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
......+.......|..|+++|+++.++......++..++|.+.+.+.+ .++...+.+.+.+.++..+......|+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 104 PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3333344555677888998899999999999999999999999999887 45555566656555555444455566543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=102.50 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=102.4
Q ss_pred HHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHhccc
Q 012803 297 SIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSFSLG 367 (456)
Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 367 (456)
.+.++.+.+.. .....+.++..++.++.|+++||+|||+.+..+..+.+++.++..... ...++.+.....
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~ 120 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF 120 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33344444433 667777788899999999999999999999988888877776665431 111333333322
Q ss_pred ccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 368 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
..+..+.+..|.+|+++++++.++.+....++..++|.+.+.+.+. ++...+++.++..++..+..++..||++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 2344556778899999999999999999999999999999998874 5555666666655555544455566643
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-10 Score=100.67 Aligned_cols=129 Identities=15% Similarity=0.223 Sum_probs=100.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc----cCchHHH-HHHHHHHHHHHHHHHHhchhhH------
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY----IGRRGTM-GFSDIVCIIGWVIIVFSKAAWW------ 129 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr----~G~r~~~-~~~~~~~~~~~~~~~~~~~~~~------ 129 (456)
..|++.+++|++....+.+--...+...+.+|+.|..+|| |||||.+ ..+.+..+++.++.+++.++..
T Consensus 54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~ 133 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE 133 (498)
T ss_pred cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence 4455888999999999999999999999999999999995 8987766 4555566666677777654433
Q ss_pred -----------HHHHHHHHHhhhcccccccceeeeeccCCCCchh-HHHHHHHHHHHHHHHHHHHhccccch
Q 012803 130 -----------LDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGG-FTTVHQLMICIGVSMTYLIGAFLNWR 189 (456)
Q Consensus 130 -----------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~l~w~ 189 (456)
++++--+.=++.-.....+-+++.|...++++.+ +++++....++|..+|..++.+.+|+
T Consensus 134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 3333334444555667778899999998777766 99999999999999999999888765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=100.66 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=100.9
Q ss_pred HHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHhc
Q 012803 295 ASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSFS 365 (456)
Q Consensus 295 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 365 (456)
.+.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+.+++.+...... ...++.+...
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 344444444443 4677778888999999999999999999999888887777776655431 1112222222
Q ss_pred ccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 366 LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
....+....+..|.+++++++.+.+..+....++..++|.+.+.+.+. ++...++..+...++...+..+..||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 222344455667888888999999999999999999999999999884 4445555555555544444445556543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=105.31 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhhhhHHHHHH
Q 012803 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLG 347 (456)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~ 347 (456)
..+......+.-.+.+++....+..|+...++....+.......+.....+..+++|+++|| +|||+.+..+.++.+++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g 94 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG 94 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence 33444444444445555455555566554333222223345555555666667799999999 99999999999999998
Q ss_pred HHHHHHHHH-------HHHHHHHhcccccccceeeecccCCcc--chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 012803 348 CLLAALSFL-------FQVYTGSFSLGMGGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGT 418 (456)
Q Consensus 348 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 418 (456)
.+.+.+... .....+.......+...+++.|.+|++ +|+.+.++.+...++|..++|.+.|++.++.++..
T Consensus 95 ~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~ 174 (489)
T PRK10207 95 YFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174 (489)
T ss_pred HHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 877765421 112333333444567788899999876 45889999999999999999999999998444433
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 012803 419 FFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (456)
.+.+..+.++..++.+...
T Consensus 175 ~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 175 TYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=105.78 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=100.4
Q ss_pred HHHhhhh-hhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhh
Q 012803 262 LELFQRK-YAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLV 339 (456)
Q Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~ 339 (456)
.+.++++ .++......++..+.++.....++.|+...++.....................+++|+++|| +|||+.+..
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~ 93 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML 93 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3445554 35555555555555544445555555544333222222333333333444445689999999 599999999
Q ss_pred hhHHHHHHHHHHHHHH------HHH-HHHHHhcccccccceeeecccCCccc--hhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 340 SAAGTCLGCLLAALSF------LFQ-VYTGSFSLGMGGIPWVIMSEVFPINM--KGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 340 ~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
+.++.+++..++.+.. ... .+.+.+.....+...++..|.+|+++ ++.+.++.+...++|..++|.+.|++
T Consensus 94 g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l 173 (500)
T PRK09584 94 GAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL 173 (500)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9988888877765531 111 22233333345666678889887543 45688899999999999999999999
Q ss_pred Hhh-hhhhHHHHHH
Q 012803 411 MKW-SSTGTFFAFS 423 (456)
Q Consensus 411 ~~~-~~~~~~~~~~ 423 (456)
.+. ++...+.+.+
T Consensus 174 ~~~~g~~~~F~i~~ 187 (500)
T PRK09584 174 AAKYGWSVAFALSV 187 (500)
T ss_pred HHhhCHHHHHHHHH
Confidence 984 4444455443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-08 Score=97.40 Aligned_cols=144 Identities=20% Similarity=0.264 Sum_probs=117.1
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhch--------hhHHHHH
Q 012803 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKA--------AWWLDLG 133 (456)
Q Consensus 63 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~ 133 (456)
..+.+.+|.+.++...+...+....-+...++|.++|+ +|+++.+.++.++..++.++.+++.. ....+++
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 34566789999999999999998889999999999996 89999999999999999988877421 2335677
Q ss_pred HHHHHhhhcccccccceeeeeccCCCC---chhHHHHHHHHHHHHHHHHHHHhccc-----------cchHHHHHhHHHH
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMICIGVSMTYLIGAFL-----------NWRILALIGTIPC 199 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l-----------~w~~~f~~~~~~~ 199 (456)
-.+..+|.|++-|+..+...|.+++++ |.....++..+.++|..+++++..++ +|...|.+.++..
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 788889999999999999999997653 56778888888999998887775544 4888888888877
Q ss_pred HHHHHHh
Q 012803 200 LVQLIGL 206 (456)
Q Consensus 200 l~~~~~~ 206 (456)
+++.+..
T Consensus 172 ~ia~lvf 178 (654)
T TIGR00926 172 ILALIVF 178 (654)
T ss_pred HHHHHHH
Confidence 7665554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=102.95 Aligned_cols=118 Identities=18% Similarity=0.344 Sum_probs=99.2
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHhhhccccc
Q 012803 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLGRLLVGYGMGLLSY 146 (456)
Q Consensus 68 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~ 146 (456)
.++ +..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+
T Consensus 252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 330 (437)
T TIGR00792 252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTG 330 (437)
T ss_pred ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence 344 56677888888899999999999999999999999999998888887777665 4667777888889999988888
Q ss_pred ccceeeeeccC-------CCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 147 VVPVYIAEITP-------KNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 147 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
...++++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888765 45569999999999999999998887765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=106.50 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=101.2
Q ss_pred ccccccccCCChhhHHH------------HHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhch---
Q 012803 62 QSGITNDLGLSVAEYSL------------FGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--- 126 (456)
Q Consensus 62 ~~~i~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--- 126 (456)
.|.+.++.|.+..+.+. ......++..++.++.++++||+|||++++.+..+.+++..+.++..+
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~ 390 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS 390 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55566677775432111 233344566678889999999999999998888887777666654321
Q ss_pred -hhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-c-------------chHH
Q 012803 127 -AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-N-------------WRIL 191 (456)
Q Consensus 127 -~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-~-------------w~~~ 191 (456)
...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+ + +...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 470 (502)
T TIGR00887 391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470 (502)
T ss_pred hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHH
Confidence 111111111112222223455667789999999999999999999999999998776554 1 3456
Q ss_pred HHHhHHHHHHHHHHhhccCCCh
Q 012803 192 ALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 192 f~~~~~~~l~~~~~~~~~~~~p 213 (456)
|++.++..+++.+..+++||++
T Consensus 471 ~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 471 LEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHheEeccCC
Confidence 7777777776666667778874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=104.02 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=96.8
Q ss_pred ccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH--H--hchhhHHHHHHHH
Q 012803 62 QSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV--F--SKAAWWLDLGRLL 136 (456)
Q Consensus 62 ~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l 136 (456)
+|. +.+++|.+..+.++..+...+...+++++.|+++||+|||+++..+.++.++...... . .++....+..-.+
T Consensus 266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 443 4567899999999999998888899999999999999999988777665443332221 1 1222322222222
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH-HHHHHHHHhccc---c-chHHHHHhHHHHHHHHHHhhccCC
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL---N-WRILALIGTIPCLVQLIGLCFIPE 211 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l---~-w~~~f~~~~~~~l~~~~~~~~~~~ 211 (456)
.++..+...+....++.|++|++.|+++.|+.+...++ .....|.+...+ | |...++..++..++..+..+++++
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 22333333345567789999999999999998765443 233466655544 4 555666666666666555555544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=96.67 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccccccceee
Q 012803 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS-----------FLFQVYTGSFSLGMGGIPWVI 375 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 375 (456)
++......++..+.++..|++.||+|.|+.+..+.++.++..+.+.+. .....+.+.. .+.++.....
T Consensus 73 g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~ 151 (462)
T PRK15034 73 FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGN 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 366666777888888889999999999999999888888777766642 1122333433 3345666778
Q ss_pred ecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 376 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 376 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
+++.+|+++||++.|+....+++|..+++.+.+.+
T Consensus 152 vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 152 ISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88999999999999999777777777666655543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=101.02 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=101.9
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 355 (456)
+............|.+ +.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 14 ~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 14 LSMLGFLATDMYLPAF-KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333334433 33444444443 3677777888899999999999999999999888877777666655431
Q ss_pred H------HHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Q 012803 356 L------FQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSL 428 (456)
Q Consensus 356 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~ 428 (456)
. ..++.+.......+...+...|.+|+++++...+..+....++..++|.+.+.+.+. ++...++..+...++
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 1 112222222222344456778899988899999999999999999999999999884 444455555555554
Q ss_pred HHHHHHh
Q 012803 429 TVLFVAK 435 (456)
Q Consensus 429 ~~~~~~~ 435 (456)
..++...
T Consensus 173 ~~~~~~~ 179 (401)
T PRK11043 173 LILPTLR 179 (401)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-10 Score=98.14 Aligned_cols=108 Identities=26% Similarity=0.252 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHHHH-----HHHhcccccccceeeeccc
Q 012803 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQVY-----TGSFSLGMGGIPWVIMSEV 379 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 379 (456)
-++.+...+.+..++.++..|.++||+|||.++..|.+..++...+.+.+-.+..+ .+...-+.-.+..++++|+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV 148 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDV 148 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhh
Confidence 34588888999999999999999999999999999999999988887776444322 2333444456778999999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 380 FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 380 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
++++.|+.+++.++...++|.++||.++|++.+
T Consensus 149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 999999999999999999999999999999987
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.8e-10 Score=105.74 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=140.8
Q ss_pred cccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccC--chHHHHHHHHHHHHHHHHHHHhchhhHH
Q 012803 53 SAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG--RRGTMGFSDIVCIIGWVIIVFSKAAWWL 130 (456)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (456)
....+....+|...++.+.+..+.+.+.++..+...++.+..|+++|+.. ++.+..+++++.+++...+.++++++.+
T Consensus 312 ~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l 391 (509)
T KOG2504|consen 312 LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL 391 (509)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444455677888899999999999999999999999999999999988 5666688889999999999999999999
Q ss_pred HHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~ 205 (456)
+..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||++++.+ +|...|+..++..+++.+.
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 99999999999988877777899999999999999999999999999999999987 5999999999998888877
Q ss_pred hhccC
Q 012803 206 LCFIP 210 (456)
Q Consensus 206 ~~~~~ 210 (456)
++..+
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 77666
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-10 Score=102.49 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=119.7
Q ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH------HHHHHhcccccccce
Q 012803 300 ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------VYTGSFSLGMGGIPW 373 (456)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 373 (456)
+......+++.....+...+.+++.|++.||++|++++.+|..+-.++.++..+...+. .+.+..-....++..
T Consensus 64 ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~ 143 (493)
T KOG1330|consen 64 NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAP 143 (493)
T ss_pred CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccch
Confidence 33344455888889999999999999999999999999999999888888777652222 445555556678999
Q ss_pred eeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Q 012803 374 VIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQ 449 (456)
Q Consensus 374 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (456)
++++|.+|.++|+++.++.+....+|..+|-...+.+.+ ..+...+...+++.++++++..++.+|.+++..++.+
T Consensus 144 s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 144 SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 999999999999999999999999999999888877777 2256677788888888888888888877665444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=103.99 Aligned_cols=126 Identities=18% Similarity=0.151 Sum_probs=89.7
Q ss_pred cccccc-cccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHH-HH---HhchhhHHHHHHH
Q 012803 61 AQSGIT-NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVI-IV---FSKAAWWLDLGRL 135 (456)
Q Consensus 61 ~~~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~r~ 135 (456)
..|.+. +.+|.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+.... .. ..+++..+.+..+
T Consensus 260 ~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (434)
T PRK15075 260 YTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVEL 339 (434)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 345444 458999999999999999999999999999999999999988765544332221 11 1234444445555
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHHHHH-HHHHHHHHHHHHhccc
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQL-MICIGVSMTYLIGAFL 186 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l 186 (456)
+.|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+++
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666666788999999999999998544 4444566677777655
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=99.97 Aligned_cols=135 Identities=21% Similarity=0.267 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHhcccccccceeeeccc
Q 012803 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSFSLGMGGIPWVIMSEV 379 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 379 (456)
.+.......++..++.++.|+++||+|||+.+..+.++.+++...+.... ....+.+.+.....+...++..|.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 107 (377)
T PRK11102 28 VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDM 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677778888999999999999999999999998888888777765531 112333333333445667888999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 380 FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 380 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
+|+++|+++.++.+....+|..++|.+.+.+.+. +....++..+.+.++..++..+..+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 108 FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999884 444555555665555555555555554
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=115.76 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=118.0
Q ss_pred ccccccCCChh-hHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhc
Q 012803 64 GITNDLGLSVA-EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 64 ~i~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (456)
.+.+++|.+.. +.+++.+...++..++++++|+++||+++|+++.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677899998 99999999999999999999999999999999999999988888888888899989899999999999
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHH
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCL 200 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l 200 (456)
...+...+++.+..|+++|++++++.+....+|.++++.++..+ ++...|++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999988777776654 34455555444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-09 Score=83.58 Aligned_cols=127 Identities=21% Similarity=0.243 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccch
Q 012803 312 AMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMK 385 (456)
Q Consensus 312 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
...++.+++.++.+++.||++||+.+..+.....++.+.+... .....+.+.......+....+..|..|+++|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 3467788889999999999999999888877777776655442 1112333333334456777888999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHhccc
Q 012803 386 GSAGSLVTLVSWLGSWIISFTFNFLMKWSS-TGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 386 ~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
+++.++.+....+|..++|.+.+.+.+..+ ...++..+....+..+..+...+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999988443 34555555555555555444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-09 Score=96.21 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=98.8
Q ss_pred HHhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH-H-----HHHHHHHH
Q 012803 292 AFYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL-S-----FLFQVYTG 362 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~ 362 (456)
....+.+.++.+.+. ++......++..++.+..|+++||+|||+.+.........+...... . ....++.+
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAA 90 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444443 46677778888999999999999999888765554444333221111 0 11123333
Q ss_pred HhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 363 SFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
.... ..........|.+|+++|+++.++.+....+|..+++.+.+++.+ .++...++..+++.++..++.++.+||..
T Consensus 91 ~g~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 91 LGQP-FLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred hHhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3322 233334555888999999999999999999999999999999987 45555566667776666666666777643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=98.59 Aligned_cols=152 Identities=19% Similarity=0.292 Sum_probs=119.7
Q ss_pred cccccccccC-CChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh-chhhHHHHH----H
Q 012803 61 AQSGITNDLG-LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-KAAWWLDLG----R 134 (456)
Q Consensus 61 ~~~~i~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~----r 134 (456)
..+...+|.| .+....+.+.+...+.=...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+. .
T Consensus 229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q 308 (400)
T PF03825_consen 229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQ 308 (400)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3344567777 677778888888888888999999999999999999999999999888888877 555544333 4
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHH-HHHHHHHHHHHHhccc----------cchHHHHHhHHHHHHHH
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQL-MICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQL 203 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l----------~w~~~f~~~~~~~l~~~ 203 (456)
.++|+..+....+...++.+..|++.|+++.+++.. ..++|..+|..+++++ .|...+.+.+.+.++..
T Consensus 309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999876 4789999999999887 35556666666665544
Q ss_pred HHh-hccCCC
Q 012803 204 IGL-CFIPES 212 (456)
Q Consensus 204 ~~~-~~~~~~ 212 (456)
+.+ ++.+|+
T Consensus 389 ~~f~~~fk~~ 398 (400)
T PF03825_consen 389 VLFVILFKPK 398 (400)
T ss_pred HHHHhhccCC
Confidence 444 444543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=102.46 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH--------HHHHHHHHHhcccccccceeeecc
Q 012803 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--------FLFQVYTGSFSLGMGGIPWVIMSE 378 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 378 (456)
+.....+.++..++.++.|+++||+|+|+.+..+.++.+++.++.... ....++.+.......+....++.|
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~ 158 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVK 158 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHh
Confidence 467788888999999999999999999999998888777766554322 122345555556667788889999
Q ss_pred cCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 379 VFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW--SSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 379 ~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.+|+++|+++.|+.+....+|..++|.+.+.+.+. ++...+++.++..++..++.+...+
T Consensus 159 ~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 159 WAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999874 5555666666655555554444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=98.54 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=98.7
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc-CchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHh
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGY 139 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (456)
.+|.+.++.|.+..+.+++.+.+.++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++.+... .-++.|+
T Consensus 219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~ 297 (355)
T TIGR00896 219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGL 297 (355)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHH
Confidence 35556677899999999999999999999999999999999 566777788888888777777665433322 4567899
Q ss_pred hhcccccccceeeeeccC-CCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 140 GMGLLSYVVPVYIAEITP-KNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
+.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887776665554 45668889988888888888999888776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=95.16 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=111.0
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc---hhh------HHHHH
Q 012803 63 SGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK---AAW------WLDLG 133 (456)
Q Consensus 63 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~------~l~~~ 133 (456)
..+-++-|++..+.-+......+...+..+++..+.||+|||+.++.+..++.+..++..... +.. ..+++
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~ 373 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA 373 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999988887776532 211 12233
Q ss_pred HHHHHhhhcc-cccccceeeeeccCCCCchhHHHHHHHHHHHHHHHH----HHHhccccchHHHHHhHHHHHH-HHHHhh
Q 012803 134 RLLVGYGMGL-LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMT----YLIGAFLNWRILALIGTIPCLV-QLIGLC 207 (456)
Q Consensus 134 r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~----~~l~~~l~w~~~f~~~~~~~l~-~~~~~~ 207 (456)
.++..++.+. .-|...-+.+|.+|++.|..++++......+...+- |++-..+|= +.|+...+++.+ .+..+.
T Consensus 374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence 3333333222 346677788999999999999998888777776554 333344444 667777777666 455667
Q ss_pred ccCCCh
Q 012803 208 FIPESP 213 (456)
Q Consensus 208 ~~~~~p 213 (456)
.+||+.
T Consensus 453 ~lPETk 458 (485)
T KOG0569|consen 453 YLPETK 458 (485)
T ss_pred hCcccC
Confidence 899985
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=100.89 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=98.1
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHhhhc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~ 142 (456)
+++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+++..++.|+|.+
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~ 334 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG 334 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 4455776665555555555677888999999999999999999999999888887777654 67777777889999999
Q ss_pred ccccccceeeeeccCCC-------CchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 143 LLSYVVPVYIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
...+...++..|..|.+ ++|...+..+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888988887654 348899999999999999988776554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=99.51 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=99.8
Q ss_pred ccccccCCChhhHHHHHHHHH-HHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH---HHh-chhhHHHHHH----
Q 012803 64 GITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---VFS-KAAWWLDLGR---- 134 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r---- 134 (456)
.+.+++|+++++.+++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-
T Consensus 235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN 314 (402)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 466779999999999987654 5688999999999999999999877777666554433 343 4556555544
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc----ccchHHHHHhHHHHHHHHHHhhcc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF----LNWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~----l~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
+..|++.+...+....++.+.+|.++++. .+...++|..+++.+++. +||+..|.+.+++++++++..+..
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777778888888888666544 333344454433444444 499999999888887776655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=94.16 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=100.3
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccc
Q 012803 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYV 147 (456)
Q Consensus 68 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 147 (456)
.+|+++++.++..+.+..+..++.+..+++.||+|+||++.++.++..++.++....++... ..+-++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998888888887766666554433 34556889999999999
Q ss_pred cceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHh
Q 012803 148 VPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIG 195 (456)
Q Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~ 195 (456)
..+...+..|++ .+++.++. ....+|..+.|++.+.+ |.+..|++.
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 999888888754 45666765 45668888998876665 667776643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=95.73 Aligned_cols=173 Identities=23% Similarity=0.231 Sum_probs=141.6
Q ss_pred HHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHH
Q 012803 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGW 118 (456)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~ 118 (456)
...++..-..+.+|.+.... ..-..-.+++|++..+..++.-...+...++++++|++.||+|.|+++..++++..+.+
T Consensus 254 i~~FLiA~~~~~DGv~til~-~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILA-MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHH-HHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 44445555555555443221 11112345999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHH
Q 012803 119 VIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILAL 193 (456)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~ 193 (456)
+..-+...-..+.++-.+.|...|......-++.++..|+++-++.+|+++...-.+..+||.+-+.+ +-|.-+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 88888777667777888999999999999999999999999999999999999999999999988776 6677777
Q ss_pred HhHHHHHHHHHHhhccCCC
Q 012803 194 IGTIPCLVQLIGLCFIPES 212 (456)
Q Consensus 194 ~~~~~~l~~~~~~~~~~~~ 212 (456)
...++.+++.+..+.+|++
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 7777777777777777765
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=100.67 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=95.3
Q ss_pred cccccccccCCChhhHHHHHHHHH-HHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh-----------chhh
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILT-IGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-----------KAAW 128 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----------~~~~ 128 (456)
..|...+++|.+.++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.+
T Consensus 231 ~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 231 LTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 444455669999999999888766 6778999999999999999999998888888777665543 4567
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMIC 173 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 173 (456)
.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 788888999999999999999999999999999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=113.12 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=112.0
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh--------------------
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS-------------------- 124 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------------------- 124 (456)
+.+.+|.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 252 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (1140)
T PRK06814 252 AKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK 331 (1140)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence 455689999999999999999999999999999999888887777777666666555543
Q ss_pred chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHH
Q 012803 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIP 198 (456)
Q Consensus 125 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~ 198 (456)
++.+.+++..++.|++.+...+...+++.+.+|+++||+++|..+....+|..+++++.+.+ ++...+++.+..
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999999998887665 455555554443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=94.50 Aligned_cols=125 Identities=18% Similarity=0.350 Sum_probs=105.9
Q ss_pred cccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHH
Q 012803 61 AQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLV 137 (456)
Q Consensus 61 ~~~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~ 137 (456)
..+.+.++ +| ++...+.+.....++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.
T Consensus 247 ~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 325 (428)
T PF13347_consen 247 FLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILA 325 (428)
T ss_pred HHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 33434444 45 346788888899999999999999999999999999999999999999988886 999999999999
Q ss_pred HhhhcccccccceeeeeccCCC-------CchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 138 GYGMGLLSYVVPVYIAEITPKN-------LRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 138 G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
|++.+...+...++++|..+.+ +.|...+.......+|..+++.+.+.+
T Consensus 326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999988632 238899999988888888887766544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.9e-08 Score=91.51 Aligned_cols=119 Identities=12% Similarity=-0.055 Sum_probs=89.3
Q ss_pred HhHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH----HHH-----HH
Q 012803 293 FYASSIFISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF----LFQ-----VY 360 (456)
Q Consensus 293 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~ 360 (456)
...+.+.++.+.+ .++......++..++++..|++.||+|||+.+..+..+.+++.+++.... ... ++
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l 103 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFI 103 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444444 44788888899999999999999999999999999999888887754321 111 22
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 411 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~ 411 (456)
.+.......+....+..+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 104 ~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 104 LTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333334555677888889899999999999999999999999998875
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=88.06 Aligned_cols=144 Identities=17% Similarity=0.116 Sum_probs=107.6
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHH-HHHHHHHhchhhHHHHHHHHHHhhhc
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII-GWVIIVFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (456)
..++.+|+|+...+.+.+.-..-.++.+++.|.++||+|++...+.+..+..+ +-....+ +++.=..+..+.|+...
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence 46889999999999999999999999999999999999999887666554433 2233333 23333456677888877
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-------cchHHH-HHhHHHHHHHHHHhhcc
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-------NWRILA-LIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-------~w~~~f-~~~~~~~l~~~~~~~~~ 209 (456)
.........++...|+++.|++.+..+...++|..+.|++++.+ .|--.| ...+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66555667778888999999999999999999999999999988 243334 44455555555444444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.5e-08 Score=95.64 Aligned_cols=123 Identities=10% Similarity=0.118 Sum_probs=94.3
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH-----hchhhHHHHHHHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLGRLLVG 138 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G 138 (456)
.+.+....+....+++.+...++..++.+++++++||+|+|+.+..+.++..++.+...+ .++.+.+++.-++.|
T Consensus 256 y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g 335 (473)
T PRK10429 256 YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLN 335 (473)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344443335667778888888899999999999999999999999888877766655432 345667777788899
Q ss_pred hhhcccccccceeeeeccCC-------CCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 139 YGMGLLSYVVPVYIAEITPK-------NLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
++.+...+...++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 336 IGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888899988552 2236788988888888888888776654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=89.37 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchh
Q 012803 84 TIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGG 163 (456)
Q Consensus 84 ~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~ 163 (456)
.+.-.-|.++.+.+.||+|||+++..+.+++++..+....+.+-....+.-|..-+...+.+.+.+.|..|.+|..-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 34455678899999999999999999999999999888877654443333344444445567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc--cchHHHHHhHHHHHHHHHHhhccCCCh
Q 012803 164 FTTVHQLMICIGVSMTYLIGAFL--NWRILALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 164 ~~~~~~~~~~~G~~~~~~l~~~l--~w~~~f~~~~~~~l~~~~~~~~~~~~p 213 (456)
..|.-....-+|.++.|.++-.. +-..+..+.+...+++.+...++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999998333 334555666677777777777776544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=82.14 Aligned_cols=123 Identities=7% Similarity=0.071 Sum_probs=90.8
Q ss_pred ccccccCC-----ChhhHHHHHHHHHHHHHHH-HHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh----ch-------
Q 012803 64 GITNDLGL-----SVAEYSLFGSILTIGAMIG-AIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS----KA------- 126 (456)
Q Consensus 64 ~i~~~~~~-----~~~~~~~~~s~~~~~~~~~-~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~------- 126 (456)
.+.+.+.+ +.+.+.++.+...+...+. .++.+++++|++|++++......+....+++++. ++
T Consensus 28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~ 107 (472)
T TIGR00769 28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL 107 (472)
T ss_pred hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence 36666655 4467999999888887777 8999999999999999988877777777766654 11
Q ss_pred --------------------hhHHHHHHHHHHhhhccccc-ccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 012803 127 --------------------AWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (456)
Q Consensus 127 --------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 185 (456)
.|...+.-+...+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333443333333 556788999999999999999999999999999988766
Q ss_pred c
Q 012803 186 L 186 (456)
Q Consensus 186 l 186 (456)
+
T Consensus 188 ~ 188 (472)
T TIGR00769 188 F 188 (472)
T ss_pred H
Confidence 4
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-08 Score=94.63 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=99.1
Q ss_pred chhhHHhHHHHHHHcCCCchHHHHHHHHHHH--HHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-------HHH
Q 012803 288 VNGIAFYASSIFISAGFSGSIGMIAMVVIQI--PMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-------LFQ 358 (456)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 358 (456)
.+.+..+.+.+.++.+.+...+..+..++.. ...+..|++.||+|+|+++.++.++..++.++.++.. ...
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 4556677777777777766533333333222 3445689999999999999999999999988877751 111
Q ss_pred -----HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012803 359 -----VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 359 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
.+.+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+...+....+++.+.+.++.+++.
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 12222222223344455677887 789999999999999999875555554544344456666677666666666
Q ss_pred HhcccC
Q 012803 434 AKLVPE 439 (456)
Q Consensus 434 ~~~~~~ 439 (456)
+.+++.
T Consensus 202 ~~~vr~ 207 (591)
T PTZ00207 202 IVFMRL 207 (591)
T ss_pred HhheeC
Confidence 665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=98.30 Aligned_cols=124 Identities=10% Similarity=-0.004 Sum_probs=96.7
Q ss_pred hhhHHhHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH----------
Q 012803 289 NGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF---------- 355 (456)
Q Consensus 289 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 355 (456)
.....-++.+.+.. ....+++...+.++..++.++.+++.||.+||+.+.++.++.+++.+++++..
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence 33344444443333 33455788888999999999999999999999999999999999888775532
Q ss_pred -----------------------------------------------HHHHHHHHhcccccccceeeecccCCccchhhH
Q 012803 356 -----------------------------------------------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSA 388 (456)
Q Consensus 356 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
...++.+++.....+...+++.|.+|+++|+.+
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 112344444455567778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 389 GSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 389 ~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.|+.+....+|..+|+.+.+++.+
T Consensus 210 ~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 210 IGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999999999875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.6e-09 Score=93.53 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=114.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH------HHHHHHHHhcccccccceeeecc
Q 012803 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF------LFQVYTGSFSLGMGGIPWVIMSE 378 (456)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 378 (456)
..++++....+.+++.+++.|.+.||+|+|..+++|..++....+++++.- ....+-+...........+++++
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd 186 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLAD 186 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Confidence 345888999999999999999999999999999999999999998888752 22244444555555666788899
Q ss_pred cCCccc-hhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 012803 379 VFPINM-KGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETKGRT 444 (456)
Q Consensus 379 ~~~~~~-~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
.+|++. |++++|+.-.+..+|..+||+++|.++| .+...+|.+++.++++-..+.++.++.++.++
T Consensus 187 ~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 187 VFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 998765 7999999999999999999999999999 66777888888888888877777666544433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=86.83 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=111.4
Q ss_pred hhhHHhHHHHHHHcCCC----chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHH
Q 012803 289 NGIAFYASSIFISAGFS----GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQ 358 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 358 (456)
...++-.+.+.++.+.+ .+.+......+..+..+.+|+++||+|.|+.+..+.+...+..+++.+. ....
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544 4477888888999999999999999999999999988888877777764 2223
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHhc
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS--TGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 436 (456)
++.|.+..+.. ....++...+|+++|+++.|+.+....+|.++++++.+++...++ +.....+.......+++..++
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666 778889999999999999999999999999999999999655332 222333444445555555666
Q ss_pred ccCC
Q 012803 437 VPET 440 (456)
Q Consensus 437 ~~~~ 440 (456)
+|..
T Consensus 202 LP~~ 205 (511)
T TIGR00806 202 LKRP 205 (511)
T ss_pred CCCC
Confidence 6643
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-09 Score=96.54 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=120.0
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccccc
Q 012803 67 NDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY 146 (456)
Q Consensus 67 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 146 (456)
++-+.+....|.+.+...+.-.+...+..++.+|+|.|+.++++..+.++=-+++++++|.+.+.+.+.+.|+-.+....
T Consensus 252 ~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 252 QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33344566799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCCCCchhHHHHH-HHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHH-HHhhccCCC
Q 012803 147 VVPVYIAEITPKNLRGGFTTVH-QLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQL-IGLCFIPES 212 (456)
Q Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~-~~~~~~~~~ 212 (456)
+...++++.+|++...+...+. +.+.++|..+.+.+++.+ |.+..|++.+.+.++.. +..+.++++
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9999999999988777766664 677888888888888777 88989988887766544 444555554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=91.35 Aligned_cols=149 Identities=27% Similarity=0.410 Sum_probs=120.4
Q ss_pred cccceecccccccccccCCCh--hhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhch--hh
Q 012803 53 SAIGYSSPAQSGITNDLGLSV--AEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKA--AW 128 (456)
Q Consensus 53 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~ 128 (456)
.+.....+..+.+.++++.+. .+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 334444556666777777666 58999999999999999999999999999999998888776666777777776 89
Q ss_pred HHHHHHHHHHhhhcccccccceeeeeccCC-CCchhHHHHHHH-HHHHHHHHHHHHhccc------cchHHHHHhHHHHH
Q 012803 129 WLDLGRLLVGYGMGLLSYVVPVYIAEITPK-NLRGGFTTVHQL-MICIGVSMTYLIGAFL------NWRILALIGTIPCL 200 (456)
Q Consensus 129 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l 200 (456)
.+++.|+.+|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.++..+ +||+.|........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888888 5778888888666544 68886666555544
Q ss_pred H
Q 012803 201 V 201 (456)
Q Consensus 201 ~ 201 (456)
.
T Consensus 176 ~ 176 (338)
T COG0477 176 L 176 (338)
T ss_pred H
Confidence 3
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=79.62 Aligned_cols=323 Identities=17% Similarity=0.071 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH------Hh--c----hhhH---HHHHHHHHHhh
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV------FS--K----AAWW---LDLGRLLVGYG 140 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~------~~--~----~~~~---l~~~r~l~G~~ 140 (456)
.+...-.-.+...+.++..|.+.||..|.++...+++..-++-.+++ +. + +-+. +++.-.+.|.-
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 119 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAI 119 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Confidence 34444445566677888899999999999998777666433322222 11 1 1122 22222222222
Q ss_pred hcccc-cccceeeeecc------CCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hc
Q 012803 141 MGLLS-YVVPVYIAEIT------PKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CF 208 (456)
Q Consensus 141 ~~~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~ 208 (456)
.-... ....++=.||. +++.+.+.++...-.--...+++|++.+.+ +.+....+.+...++..+.= ++
T Consensus 120 ~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 120 ERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11122233553 233446777777777777888888888776 55555555555555543322 22
Q ss_pred c----CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 012803 209 I----PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (456)
Q Consensus 209 ~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (456)
+ ...|. +..+++.++........ +...........+..++.-+.....++..++++.+..-+- ..+.++..
T Consensus 200 l~~VY~~~P~-L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~a-lalLY~TV 274 (432)
T PF06963_consen 200 LARVYNSVPA-LAVKKRSSESESSSDEE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFA-LALLYFTV 274 (432)
T ss_pred HHHHHHhChH-hcCCCCCcccccccccc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHH-HHHHHHHH
Confidence 2 22232 22222211111000000 0000000111111111111223455666776665544333 33333333
Q ss_pred hccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH-----
Q 012803 285 FGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL----- 356 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----- 356 (456)
.+....+..| +...|++.. ..-....+.++.+.++.+++.+|+|..+.-..+......+..+....+.
T Consensus 275 Lsf~~lmt~y----l~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 275 LSFGGLMTAY----LKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred hcCcHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333333333 344566655 4455566778888999999999999888766666655444333322211
Q ss_pred ---HH---HHHHHhc-----ccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHH
Q 012803 357 ---FQ---VYTGSFS-----LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 407 (456)
Q Consensus 357 ---~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 407 (456)
.. ++.+... -+.-....-+++|..|+++||+..|+-+..+++...+.-.+.
T Consensus 351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1111111 111234456788999999999999999999998876665444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=94.22 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=102.1
Q ss_pred hhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch--HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHH
Q 012803 266 QRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS--IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG 343 (456)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 343 (456)
+++++...+....+.....+........-++.+..+.|.+.. ++.....++..++.++.|+++|.+|||..++.+.++
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l 117 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL 117 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence 344444444434433332222222222233444555544433 777778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHH-----HHH-HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 012803 344 TCLGCLLAALSF-----LFQ-VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSST 416 (456)
Q Consensus 344 ~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~ 416 (456)
..++.++.+... ... .+.+. ..+........++|..|.+.|..+.++.....-....++|.+...+.. .++.
T Consensus 118 ~vvG~Iv~atA~~~~~~iag~~l~Gv-gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 118 GVVGSIVCATAQNMNTFIAGMVLYGV-GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred HHhHHHHhhcCCcHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 999998877642 111 22222 233334445568999999999888877765555555567777666554 4455
Q ss_pred hHHHHHHHHHHHHHHH
Q 012803 417 GTFFAFSAICSLTVLF 432 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~ 432 (456)
+.+++..+...+..++
T Consensus 197 w~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVL 212 (599)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555555544444433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=84.13 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=103.6
Q ss_pred HHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-----HHHHH---HHHh
Q 012803 296 SSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-----LFQVY---TGSF 364 (456)
Q Consensus 296 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~ 364 (456)
+.+-++.+.+.+ ++..+..+.+.+.++.-|.+.||+|.|+....+.++..+-.+.+.+.. ...+. ....
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 333344455544 777777788888899999999999999999999888887777766541 11122 2223
Q ss_pred cccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-hh---hhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 365 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WS---STGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
..+.+.+...++++.+|+|++|.+.|+.. .+++|..+...+.+.+.. .+ ......+.....++..+..++..++
T Consensus 118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 118 AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33446777889999999999999999999 999999999888888877 33 4455556666666666666665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-08 Score=92.09 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=102.3
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccc
Q 012803 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (456)
Q Consensus 66 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (456)
++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++.++..+.++.+ .+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999888877777666666543 3456678999999999
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c-chHHHHHhHHHHH
Q 012803 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCL 200 (456)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~-w~~~f~~~~~~~l 200 (456)
|...+...+.+|++ .+.+.++..... +|..++|.+.+.+ | -|..|++..+..+
T Consensus 366 P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 366 PTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999988654 567777776433 5666666666555 4 4666665444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-07 Score=88.38 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH--hchhhHHHHHHHHHHhhhcccccccce
Q 012803 73 VAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF--SKAAWWLDLGRLLVGYGMGLLSYVVPV 150 (456)
Q Consensus 73 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~ 150 (456)
++..+.+.....+...++.+++++++||+|+|+.+..+.++.++......+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777888889999999999999999999888776654443333 357777888889999999999999999
Q ss_pred eeeeccCC-------CCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 151 YIAEITPK-------NLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 151 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
+++|..+. ++.|...+.......+|..+|+.+++.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988752 2236778888888889988888887665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-08 Score=68.14 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=70.2
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLD 131 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (456)
.+.|.+|.+++|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+.+...+..+.+++.++++.+.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 448999999999999999999999999999999999999999999999999999999999999999999887653
|
Note that many members are hypothetical proteins. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-07 Score=85.53 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=96.4
Q ss_pred HHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHh----hcCCcchhhhh-hHHHHHHHHHHHHHHH-------
Q 012803 292 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMD----KSGRRPLLLVS-AAGTCLGCLLAALSFL------- 356 (456)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~------- 356 (456)
..+.+.+++..+.+.. .......+.+++..++.|+++| |+|||+..+.. .+..++++.++.....
T Consensus 24 ~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~ 103 (477)
T TIGR01301 24 LSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD 103 (477)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 3334445555565544 6667777888889999999999 59999988764 5555555555543210
Q ss_pred -----------HHHHHH-----HhcccccccceeeecccCCccch--hhHhHHHHHHHHHHHHHHHHHHHHHH--hh---
Q 012803 357 -----------FQVYTG-----SFSLGMGGIPWVIMSEVFPINMK--GSAGSLVTLVSWLGSWIISFTFNFLM--KW--- 413 (456)
Q Consensus 357 -----------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~i~~~~~g~l~--~~--- 413 (456)
...+.+ +......+...+++.|..|+++| +.+.++.+....+|+.+++.+.+... +.
T Consensus 104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~ 183 (477)
T TIGR01301 104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF 183 (477)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 011111 12222334556889999998765 67999999999999999999888752 11
Q ss_pred -----------hhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 414 -----------SSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 414 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
+....|++.++++++..++..+..+|..
T Consensus 184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2233455555555566666666667653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=90.82 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=117.7
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH----------hchhhHHHHHH
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF----------SKAAWWLDLGR 134 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r 134 (456)
..+.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+..+..-
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 34678999999999999999999999999999999999999999999999888765431 13444556667
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c-----chHHHHH---hHHHHHHH
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-----WRILALI---GTIPCLVQ 202 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~-----w~~~f~~---~~~~~l~~ 202 (456)
++.+++.+....+...++.+..|+++++...++..+..++|..+++.+++.+ | ++..+.. ..+..++.
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~ 438 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP 438 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence 8889998888889999999999999999999999999999999999888766 3 4333332 33344444
Q ss_pred HHHhhccCC
Q 012803 203 LIGLCFIPE 211 (456)
Q Consensus 203 ~~~~~~~~~ 211 (456)
+....++|+
T Consensus 439 l~~~~llP~ 447 (468)
T TIGR00788 439 LPLLHLLPR 447 (468)
T ss_pred HHHHHhCCC
Confidence 555557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-07 Score=81.66 Aligned_cols=143 Identities=18% Similarity=0.357 Sum_probs=118.5
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhc-ccCchHHHHHHHHHHHHHHHHHHH---hchhhHHHHHHHHHHh
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-YIGRRGTMGFSDIVCIIGWVIIVF---SKAAWWLDLGRLLVGY 139 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-r~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~ 139 (456)
+=.|-||++..|...++..+..|..++....|++.. |.++|+.-.+|+....++..+..+ ..+.+.+...-++.|+
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL 313 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 356679999999999999999999999999999887 688888888888887777665444 4678889999999999
Q ss_pred hhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc--------------cchHHHHHhHHHHHHHHHH
Q 012803 140 GMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--------------NWRILALIGTIPCLVQLIG 205 (456)
Q Consensus 140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--------------~w~~~f~~~~~~~l~~~~~ 205 (456)
+.|.+.....+..-|..++++.|..+|.+.....++..++..+++.+ +|-.+|.+.++..++++.+
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999999998888888777654 4666677766666655544
Q ss_pred h
Q 012803 206 L 206 (456)
Q Consensus 206 ~ 206 (456)
.
T Consensus 394 l 394 (403)
T PF03209_consen 394 L 394 (403)
T ss_pred H
Confidence 4
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-07 Score=76.67 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=106.3
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHH---HHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGM---IAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF 355 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 355 (456)
.......+..+.++.|.+++.+..+.+..... ....++..+ .+..|.+.|++|.+.++.++.....+++..+....
T Consensus 9 ~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 9 IWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred HHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455678899999999988888877443 334455554 47889999999999999999999999998887641
Q ss_pred H--------HH--HHHHHhccc--cc-ccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 012803 356 L--------FQ--VYTGSFSLG--MG-GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAF 422 (456)
Q Consensus 356 ~--------~~--~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~ 422 (456)
. .. ++......+ .. ........+.+| ++||++.|+.-....+++++-..+...+.+.+....+.+.
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 1 11 111111111 11 122233447787 6899999999999999999988888877775544445555
Q ss_pred HHHHHHHHHHHHhcccC
Q 012803 423 SAICSLTVLFVAKLVPE 439 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~~~ 439 (456)
+....+..++...++|.
T Consensus 167 a~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 167 AVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHHHHHHHhhheec
Confidence 55555554544444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=86.66 Aligned_cols=133 Identities=18% Similarity=0.133 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH--------HHHHHHHHhcccccccceeeec
Q 012803 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF--------LFQVYTGSFSLGMGGIPWVIMS 377 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 377 (456)
.+.+......+.+++.+.++++.||+|.|+++..+.++.+++.++..... ...++.|+.....+|....+..
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~ 154 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILA 154 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceee
Confidence 34888899999999999999999999999999999999999888887752 2235666666667899999999
Q ss_pred ccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 378 EVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 378 ~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
+-.|+++|++..++.....++|.+++-++.|++.+ .|+...+++.+++.++..++..++..
T Consensus 155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998 47777888888888887777666554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-06 Score=79.01 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeee
Q 012803 75 EYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAE 154 (456)
Q Consensus 75 ~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 154 (456)
..+.+.-+-.+...+.-+.+.+..+|+..+.=.....+++.++.++.+++++.+.=+++-++.+++.|........+..
T Consensus 60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3455555666667777778888899987665566677788889999999999999889999999998887777766643
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHhHHHHHHHHHHh-hccCC
Q 012803 155 ITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----NWRILALIGTIPCLVQLIGL-CFIPE 211 (456)
Q Consensus 155 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~~~f~~~~~~~l~~~~~~-~~~~~ 211 (456)
.+++ ...+.+..+.+.++++|+..-..+ +-|..+++...+.++..+.+ +.+|+
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5543 346777777777777776544332 44667777666655544444 34443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-07 Score=88.08 Aligned_cols=132 Identities=22% Similarity=0.294 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------HHHHHHHHHhcccccccceeeeccc
Q 012803 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEV 379 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (456)
..+...+..++.++|.++.|.++||+|||+++..+.++..++.+..++. ....++.+++..+.....+.+..|.
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~ 199 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEI 199 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheee
Confidence 3467788889999999999999999999999999999998888776664 3444778888888888999999999
Q ss_pred CCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 380 FPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 380 ~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
.+++.|+.+..+ ......++.++|...+++.. ++...++.......+..++ +++.+|.
T Consensus 200 ~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 200 VSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred cCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 999999999999 88888899999999988887 4444444444444444333 4444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=85.36 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=118.5
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHc-CCCch---HHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhhH
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GFSGS---IGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAA 342 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 342 (456)
+..+.++..=+.=-+.+++....+..|+.....+. +.+.. ..+..+....-+..+++||++||+ |+|+++..+.+
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 33444444455556666766777777776655421 23332 444555555566778999999995 99999999999
Q ss_pred HHHHHHHHHHHHH-------HHH-HHHHHhcccccccceeeecccCCcc--chhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 343 GTCLGCLLAALSF-------LFQ-VYTGSFSLGMGGIPWVIMSEVFPIN--MKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 343 ~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+++++.+++.... ... .+.....+..=+...+++.|++|++ +|..+.++.....++|+.++|.+.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999887652 111 2222333333466778888988753 47788999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 413 WSSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
..++...+..+.+....+++.+...++
T Consensus 181 ~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 181 NYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 666666666666666666665555543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=73.57 Aligned_cols=298 Identities=14% Similarity=0.050 Sum_probs=158.8
Q ss_pred cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 012803 59 SPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (456)
Q Consensus 59 ~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (456)
+|..-.+-+.++....++|.+.-...-...+...+.|.++||-|||+.-+.-++...+++ +.-.+++|-.++++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 566666778889999999998888888888889999999999999998665555554433 3345788999999999999
Q ss_pred hhhccccccccee-eeeccCCCCchhHHHHH----HH----HHHHHHHHHHHHhcc----c--cchHHHHHhHHHHHHHH
Q 012803 139 YGMGLLSYVVPVY-IAEITPKNLRGGFTTVH----QL----MICIGVSMTYLIGAF----L--NWRILALIGTIPCLVQL 203 (456)
Q Consensus 139 ~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~----~~----~~~~G~~~~~~l~~~----l--~w~~~f~~~~~~~l~~~ 203 (456)
++.+..+.+..++ +.|.- ++|+.-.-+. .= +..+=.+++.+.+.. + |--.+|-..+.+..++.
T Consensus 136 iaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm 213 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM 213 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 9999888877654 44543 2232211111 11 111112222233322 2 44455555444433332
Q ss_pred HHhhc-cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHH
Q 012803 204 IGLCF-IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVL 282 (456)
Q Consensus 204 ~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (456)
.+.+- -.|+ -++..+.++.. .+.+...+.+..+++. .+...+...
T Consensus 214 Avil~~W~EN------ygdps~~kdll-------------------------tqf~gaa~aiaSD~ki---~LLG~iqsL 259 (454)
T KOG4332|consen 214 AVILSSWSEN------YGDPSENKDLL-------------------------TQFKGAARAIASDEKI---ALLGAIQSL 259 (454)
T ss_pred HHHHhhhhhc------cCChhhhHHHH-------------------------HHhhHhHHHHhcchHH---HHHHHHHHH
Confidence 22211 1111 11111110000 0011122223333332 222233333
Q ss_pred HHhccchhhHHhHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCc--chhhhhhHHHHHHHHHHHHHH----
Q 012803 283 QQFGGVNGIAFYASSIF-ISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRR--PLLLVSAAGTCLGCLLAALSF---- 355 (456)
Q Consensus 283 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~---- 355 (456)
.....+.....|.|..- +..+..-+.++..+..+.++|+-+..++..|-..| ..+.+...+..+.+.+.....
T Consensus 260 FE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP 339 (454)
T KOG4332|consen 260 FEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSP 339 (454)
T ss_pred HhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33334444445554432 13344556788888888888887777776654433 334444444444433332221
Q ss_pred --------HHH-HHHHHhcccccccceeeecccCCccchhhHhHHHH
Q 012803 356 --------LFQ-VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT 393 (456)
Q Consensus 356 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 393 (456)
... ...-.+.+..+|.+.-+-.+..|.+.|++.+-.+.
T Consensus 340 ~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 340 SKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred CcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 111 12223333345666666778889888876654443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-06 Score=79.06 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=98.5
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHhhhc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~ 142 (456)
.+.-+|.++.+..+.......+..++.+++.++.+|+|+|+++..+.++..++.++..+.+ +.+..++..++.++|.+
T Consensus 263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~ 342 (467)
T COG2211 263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG 342 (467)
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence 3444676777788888888888888899999999999999999999999999999988876 78888999999999999
Q ss_pred ccccccceeeeeccCC------CCc-hhHHHHHHHHHHHHHHHHHHHhcc
Q 012803 143 LLSYVVPVYIAEITPK------NLR-GGFTTVHQLMICIGVSMTYLIGAF 185 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~------~~r-~~~~~~~~~~~~~G~~~~~~l~~~ 185 (456)
...+...++++|..+- ++| |...+......=+|..++..+.++
T Consensus 343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876532 222 777777777777777776654443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-06 Score=76.05 Aligned_cols=167 Identities=17% Similarity=0.125 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHH
Q 012803 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCI 115 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~ 115 (456)
-|.+...+.+.++..... ..=+|.+..|-|+|..+.|++.+...+.....++....+++| -.+|+..+....++.
T Consensus 210 aW~vtLfmGlqS~~~Y~~----~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIV----IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred hHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 344444444444433222 334677999999999999999999999999999999999996 456777788888888
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCc-hhHHHHHHHHHHHHHHHHHHHhccc-----cch
Q 012803 116 IGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLR-GGFTTVHQLMICIGVSMTYLIGAFL-----NWR 189 (456)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~l~~~l-----~w~ 189 (456)
++...+.+.+.-..+.- -++.|+|.|..++.+..++.+..++.++ ++..++.+....+=..+||.+.+++ +|+
T Consensus 286 ~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~ 364 (395)
T COG2807 286 VGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS 364 (395)
T ss_pred HHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence 88887777664333322 4899999999999999999988766554 5666666666666667789888888 899
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 012803 190 ILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 190 ~~f~~~~~~~l~~~~~~~~ 208 (456)
...+..+...++..+.-+.
T Consensus 365 ~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 365 APLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888777776665544443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-07 Score=84.31 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=118.5
Q ss_pred HHHHHHHhhhhhhccccceecccccccccccCCChhhHHH--------HHHHHH-HHHHHHHHHHhhhhcccCchHHHHH
Q 012803 39 LSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSL--------FGSILT-IGAMIGAIMSGKIADYIGRRGTMGF 109 (456)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~s~~~-~~~~~~~~~~G~l~dr~G~r~~~~~ 109 (456)
..++..+...|+......-.+.....+.++.++.+.+... ...+.. .++..+-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3344455555655555555555566677777765544333 111111 2222244556678999999999999
Q ss_pred HHHHHHHHHHHHHHhchh----hHH----HHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHH
Q 012803 110 SDIVCIIGWVIIVFSKAA----WWL----DLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYL 181 (456)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~----~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (456)
|.+++++..+..+...|- ..+ .+..++.-+| -......+-+|.+|.+-|+..-|+..+..-.|.+++..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 999999999998887661 112 2223333333 23344566789999999999999999998889888876
Q ss_pred Hhccc---------cchHHHHHhHHHHHHHHHHhhccCCChh
Q 012803 182 IGAFL---------NWRILALIGTIPCLVQLIGLCFIPESPR 214 (456)
Q Consensus 182 l~~~l---------~w~~~f~~~~~~~l~~~~~~~~~~~~p~ 214 (456)
.-..+ +.|+.+++.+...++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 55433 7899999999999999999999998853
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.4e-06 Score=73.58 Aligned_cols=133 Identities=13% Similarity=-0.068 Sum_probs=101.6
Q ss_pred HHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH---HH
Q 012803 280 MVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS---FL 356 (456)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~ 356 (456)
.+.........+...+...++....+++++......+..+.++..+++.+|+|.|+.+..+..+++++..++.-. ..
T Consensus 24 l~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~ 103 (422)
T COG0738 24 LWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKS 103 (422)
T ss_pred HHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333333445556666667777777777888888899999999999999999999999999999999999888632 11
Q ss_pred HH-HHH-----HHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 357 FQ-VYT-----GSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 357 ~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.. ++. +..........+.++..+.|++....-+.+.+.++.+|++++|.+.+++..
T Consensus 104 y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 104 YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11 222 222222245667888888888888889999999999999999999999876
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=83.10 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH------HHHHHhcccccccceeeecccC
Q 012803 307 SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------VYTGSFSLGMGGIPWVIMSEVF 380 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 380 (456)
+++.....++..++.++.|+++|++|||+.+..+.+...++.++...+.... ++.++...+...+...+.+|..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia 171 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC
Confidence 5888889999999999999999999999999999999999999988763222 4555555555677789999999
Q ss_pred CccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHhcccCC
Q 012803 381 PINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW---SSTGTFFAFSAICSLTVLFVAKLVPET 440 (456)
Q Consensus 381 ~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
|++.||...+..+....+|..++ .+.+...+. ++...+.+..+.+++..+. .++.||.
T Consensus 172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999999999999999888888 555555542 3443444444444444444 5566643
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-05 Score=69.86 Aligned_cols=353 Identities=12% Similarity=0.097 Sum_probs=192.1
Q ss_pred cccCCChhhHH-HHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccc
Q 012803 67 NDLGLSVAEYS-LFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLS 145 (456)
Q Consensus 67 ~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 145 (456)
.+.|++..|.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.....-.+..+.++.+.+=+.-++.|...+ ..
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 45566666543 34444445566666777788999988999988877777777788889999999999999999765 56
Q ss_pred cccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc------cchHHHHHhHHHHHHHHHHhhccCCChhHHHhc
Q 012803 146 YVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKT 219 (456)
Q Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~ 219 (456)
.+-++++-+..+++++.++.+.-.++.-.|...|..++..+ ++...=++......++....+++|..+|...-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 67788999999999999999999888888888888888766 333333444444445566667888776544333
Q ss_pred CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHH
Q 012803 220 GKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF 299 (456)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (456)
++.++.. ..+.+..++ ..+..+ ..+.....-...+.+..++|......+-..+..+ ++.-...|.+...
T Consensus 193 ~~~~~~~--v~~~e~~~~--~~~~~~---~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~sc----g~~QV~nY~Q~LW 261 (433)
T KOG3810|consen 193 RLEDKIS--VGDLEEMNP--QASYMS---YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASC----GYYQVTNYTQILW 261 (433)
T ss_pred cccccce--eccchhcCc--cchhhH---HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhc----hhHHHHHHHHHHH
Confidence 3222111 001111110 000000 0000011111233344445443332222222222 3445556666665
Q ss_pred HHcC-CCc----hHHHHHHHHHHHHHHHHHHHHHhhcCCcch--hhhhhHHHHHHHHHHHHH------HHHH-HHHHHhc
Q 012803 300 ISAG-FSG----SIGMIAMVVIQIPMTLLGVLLMDKSGRRPL--LLVSAAGTCLGCLLAALS------FLFQ-VYTGSFS 365 (456)
Q Consensus 300 ~~~~-~~~----~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~ 365 (456)
+... ... +..=.+..+.+.++.+..|.+.-++.|..- +.++....+...+.+... .... ++-..+.
T Consensus 262 ~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~ 341 (433)
T KOG3810|consen 262 KEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQ 341 (433)
T ss_pred HhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHh
Confidence 5542 222 244455566677777888887655555432 233333333222333221 1111 1111111
Q ss_pred ccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh------------hhhhHHHHHHHHHHHHHHHH
Q 012803 366 LGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW------------SSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~------------~~~~~~~~~~~~~~~~~~~~ 433 (456)
. ..++...-+++....|.-|...|+.+++.-+-..+-..+. .|. -+..-+.+++++.++...+.
T Consensus 342 l-~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 342 L-TITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred h-hhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 1 1122223334555667788899988877665554444332 221 12233566666666665544
Q ss_pred Hh
Q 012803 434 AK 435 (456)
Q Consensus 434 ~~ 435 (456)
+.
T Consensus 418 ~~ 419 (433)
T KOG3810|consen 418 YL 419 (433)
T ss_pred HH
Confidence 33
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-08 Score=89.44 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=125.1
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcc
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGL 143 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~ 143 (456)
.-.||++..+...|........+-.+.-++.+++..|+|+-+++..++.+..+=.+...+.+|.|..+...+++|+..+.
T Consensus 396 WHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 396 WHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHAL 475 (618)
T ss_pred HHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHH
Confidence 45678887888888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHH-HHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 144 LSYVVPVYIAEITPKNLRGGFTTVHQLM-ICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.+.+..+|++...||+.|..+.++.+.. .++|--+|.++|+.+ +=|..|.+.++.+++.++....
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654 567777777777766 7788888888877776555433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=67.62 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeecc
Q 012803 77 SLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEIT 156 (456)
Q Consensus 77 ~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (456)
-.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-... -+-++.+.++.+-++.|++.+..+.+.-.++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 34456667777888888999999999999999999998864444 35677888999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 012803 157 PKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (456)
Q Consensus 157 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 185 (456)
++++|++..+++......+.++|.++...
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888887765533
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-05 Score=67.40 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=87.4
Q ss_pred hhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhc-----ccCchHHH-HHHHHHHHHHHHHH
Q 012803 48 SYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-----YIGRRGTM-GFSDIVCIIGWVII 121 (456)
Q Consensus 48 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~G~r~~~-~~~~~~~~~~~~~~ 121 (456)
....|.-.+... .+|.+.+.-|+|.++.+...-++. .+. .-+.+.++.| |+||||.- +-+..+.+..+...
T Consensus 40 YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~-P~s-LKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 40 YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW-PFS-LKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh-HHH-HHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 344566666666 788888888888888776533322 222 3577888999 99998865 33444444444444
Q ss_pred HHh-----------chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 012803 122 VFS-----------KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG 183 (456)
Q Consensus 122 ~~~-----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 183 (456)
+.. ++...+....++.-+..+....+.-.+......+++-|-+......+.+.|..++..+-
T Consensus 117 s~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 117 SYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 432 23333444556666666767777777777777888888888888888888888776554
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.3e-06 Score=78.77 Aligned_cols=139 Identities=17% Similarity=0.006 Sum_probs=107.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH------HHHHHHHHHHhcccccccceeee
Q 012803 303 GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL------SFLFQVYTGSFSLGMGGIPWVIM 376 (456)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 376 (456)
+..-+...+.+.++.+++.+.++.+.||++..+.+....++..+..++-.. .....++.|++..+..|....++
T Consensus 80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 334457788888999999999999999999555544444333332222211 13455888999999999999999
Q ss_pred cccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 377 SEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 377 ~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
...+.+++|+..+|+.+...++|+++|+.+...+.+ .++.+.|++-+++.++.++++++++|...
T Consensus 160 g~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 160 GNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 999999999999999999999999999999988643 56677788888888888888888877543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=76.86 Aligned_cols=115 Identities=10% Similarity=0.154 Sum_probs=75.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHhhhcccccccc
Q 012803 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK--AAWWLDLGRLLVGYGMGLLSYVVP 149 (456)
Q Consensus 72 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~ 149 (456)
++...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +.+.+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888899999999999999999999988766555544444433332 233344555667877766666666
Q ss_pred eeeeeccCC------CCc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 150 VYIAEITPK------NLR-GGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 150 ~~i~~~~~~------~~r-~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
++++|..+. ++| |...+......-+|..+++.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677766542 222 5556766667777777776665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.8e-05 Score=72.94 Aligned_cols=122 Identities=10% Similarity=0.212 Sum_probs=110.2
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHh-hhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhc
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSG-KIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~ 142 (456)
.+...++++..+.+...+.......+++.+.. .+...+|-|++...|+....+...+.+++++.|+++....+.++. .
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence 47788999999999999999999999998877 777889999999999999999999999999999999999888886 5
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
...|+..+.++.+.+++++|++.++.....++...++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 67889999999999999999999999999999999998876554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.8e-05 Score=73.66 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=116.9
Q ss_pred eecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhchh--------
Q 012803 57 YSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAA-------- 127 (456)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~-------- 127 (456)
+....+..+.+++|.+...+.-..+.+.-......+.++.++|- +||-+++.++.++..++..+..++...
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 34556677889999988888888888888888899999999996 689999999999988886555443211
Q ss_pred -----------------hHHHHHHHHHHhhhcccccccceeeeeccC---CCCc---hhHHHHHHHHHHHHHHHHHHHhc
Q 012803 128 -----------------WWLDLGRLLVGYGMGLLSYVVPVYIAEITP---KNLR---GGFTTVHQLMICIGVSMTYLIGA 184 (456)
Q Consensus 128 -----------------~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~G~~~~~~l~~ 184 (456)
..++.+.-+..+|.|+.-|...+.-+|-++ ++++ ...+.++....++|..++..+-.
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 246666778888999999999999999998 3222 46778888888889888876665
Q ss_pred cc----cchHHHHHhHHHHHHHHHHhh
Q 012803 185 FL----NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 185 ~l----~w~~~f~~~~~~~l~~~~~~~ 207 (456)
+. +|.+.|.+.....++++++++
T Consensus 216 yiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 216 YIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hhhhcccceeeccHHHHHHHHHHHHHH
Confidence 55 899999888777666555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-08 Score=95.94 Aligned_cols=150 Identities=20% Similarity=0.221 Sum_probs=97.4
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH--H---hch-----hhHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV--F---SKA-----AWWL 130 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~--~---~~~-----~~~l 130 (456)
..+.+.++.+.+.. -+......+...++.+....+.||+|||+.++.+..+.+++.+..+ . .++ ...+
T Consensus 275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44557777777766 2222333344556667777999999999999999999888877764 1 111 2222
Q ss_pred HHHHHH-HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHH-HHH
Q 012803 131 DLGRLL-VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLV-QLI 204 (456)
Q Consensus 131 ~~~r~l-~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~-~~~ 204 (456)
...... .+++. ...+....+..|.+|.+.|++..++......++..+++.+...+ +-...+++.+..+++ .++
T Consensus 353 ~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 353 VFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred eeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 222211 12222 33456668889999999999999999988888888877766554 313345555555444 445
Q ss_pred HhhccCCCh
Q 012803 205 GLCFIPESP 213 (456)
Q Consensus 205 ~~~~~~~~p 213 (456)
.++++||+.
T Consensus 432 ~~~~lpET~ 440 (451)
T PF00083_consen 432 VYFFLPETK 440 (451)
T ss_pred eeEEEeeCC
Confidence 567899984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-06 Score=58.31 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=52.3
Q ss_pred cceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHH
Q 012803 55 IGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC 114 (456)
Q Consensus 55 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~ 114 (456)
.+...|.+|...++.|+|+.|+|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 16 ~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 334477888888899999999999999999999999999999999999998887766543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0039 Score=58.30 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=84.0
Q ss_pred cccccCC---ChhhHHHHHHHHHH-HHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc---------h-----
Q 012803 65 ITNDLGL---SVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK---------A----- 126 (456)
Q Consensus 65 i~~~~~~---~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~----- 126 (456)
+.+.+.+ .++.+.++-+..-+ +..+..++.+++.+++.+.+++-.-+..+....+++++.- +
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~ 128 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSR 128 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHH
Confidence 5555543 46678888888888 7778889999999999999999888888777777777631 1
Q ss_pred ------------------hhHHHHHHHHHHhhhccccc-ccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 127 ------------------AWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 127 ------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
.|...+.-.+.-+=...... .-.....|.+..+|-.|..++++.+.+++..++..+..++
T Consensus 129 ~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 129 DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 02221222222111111111 2234556778888889999999999999999988887776
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=62.18 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=77.4
Q ss_pred Hhhhhhhccccceecccccccccc--cCCChhhHHHHHHHHHHHHHHHHHHHhhhhc-----ccCchHHHHHH-HHHHHH
Q 012803 45 VCGSYVFGSAIGYSSPAQSGITND--LGLSVAEYSLFGSILTIGAMIGAIMSGKIAD-----YIGRRGTMGFS-DIVCII 116 (456)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d-----r~G~r~~~~~~-~~~~~~ 116 (456)
.+..++.|.-.+.....+|.+.++ -+++.+|.+...-+ ...+. .-++|.++.| |+||||..++= -.+.++
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 344556677676655567777777 67888887654211 11111 2344555554 89999876432 233333
Q ss_pred HHHHHHHhc----------------------h--hhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHH
Q 012803 117 GWVIIVFSK----------------------A--AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMI 172 (456)
Q Consensus 117 ~~~~~~~~~----------------------~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 172 (456)
..+..+..- + ...+....++.=+-.+--..+.-.+.-....+++++.+......+.
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 333332211 0 1122233333333344445555556666677888888888888888
Q ss_pred HHHHHHHHHHhc
Q 012803 173 CIGVSMTYLIGA 184 (456)
Q Consensus 173 ~~G~~~~~~l~~ 184 (456)
++|..++..+--
T Consensus 164 ~~Gyfls~tvFl 175 (544)
T PF13000_consen 164 TAGYFLSFTVFL 175 (544)
T ss_pred hhhHHHHHHHHH
Confidence 888888765543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.3e-05 Score=69.40 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---h------hhHHHHHHHHHHhhhcccccccceeeeeccCCCC---chhHHHHHHHHH
Q 012803 105 GTMGFSDIVCIIGWVIIVFSK---A------AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL---RGGFTTVHQLMI 172 (456)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 172 (456)
|++++|.++..+|.++..++. + .+.++++.++.++|.|+.-|...++.+|.+++++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 677889999999998855432 2 2678999999999999999999999999998763 467888899999
Q ss_pred HHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc
Q 012803 173 CIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 173 ~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
++|..++..+..++ +|.+.|.+.++..+++++.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999888877 89999999888888776665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00058 Score=64.79 Aligned_cols=127 Identities=9% Similarity=0.021 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH-HH----h---chhhHHHHHHHHHHhhhcccccccceeee
Q 012803 82 ILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII-VF----S---KAAWWLDLGRLLVGYGMGLLSYVVPVYIA 153 (456)
Q Consensus 82 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~-~~----~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 153 (456)
...+...+..+..-.+..|+..|.=+..++++..+..++. .+ . ..++..++.-++.|++.+.......++.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 3444444444444555566665333333433222222211 11 1 24666777778899998888888877766
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----c-----ch--HHHHHhHHHHHHHHHHhhccCCCh
Q 012803 154 EITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----N-----WR--ILALIGTIPCLVQLIGLCFIPESP 213 (456)
Q Consensus 154 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~-----w~--~~f~~~~~~~l~~~~~~~~~~~~p 213 (456)
. +|++ .+..+..+.+++++++.++--.. + ++ ..|.+..++.+++++.+..+++.|
T Consensus 133 ~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~ 199 (437)
T TIGR00939 133 V-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLP 199 (437)
T ss_pred c-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4 5543 44555555555555544332111 1 11 223344455566666666777776
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=61.39 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=116.8
Q ss_pred CCchhHHHHHHHHHHHHHHHH--HHHhc-----cc--cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHH
Q 012803 159 NLRGGFTTVHQLMICIGVSMT--YLIGA-----FL--NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAAL 229 (456)
Q Consensus 159 ~~r~~~~~~~~~~~~~G~~~~--~~l~~-----~l--~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (456)
++|+..+.+...++++|.++. |.+-. .+ .|++.+.+.+++.++-++.+..+-++-+ ...+++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd-~~~~~~-------- 72 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFD-IYSPKE-------- 72 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCccc--------
Confidence 567777778888888887765 33222 11 8999999888887776555544422100 000000
Q ss_pred HHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCC----
Q 012803 230 QRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFS---- 305 (456)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 305 (456)
+++.++.+...+.+..+.+|++..|............ ......+.+.......++.+
T Consensus 73 -----------------k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~--~V~p~t~~~~~~~~~~s~~ni~~~ 133 (267)
T PF07672_consen 73 -----------------KQEKENSTLSKKPSYKSILKEKETWKWILIYGIWLVV--VVFPFTPSWFNILIWISPANIKSV 133 (267)
T ss_pred -----------------ccccccccccccchHHHHHccchHHHHHHHHHHHhee--EEEeccchhHhHhhhcCccccccc
Confidence 0000111222446778889988887766655544332 11222334444333333321
Q ss_pred --ch-------HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH----------------HHHHHHH
Q 012803 306 --GS-------IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAAL----------------SFLFQVY 360 (456)
Q Consensus 306 --~~-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 360 (456)
.+ ........+..+|....|...+..=+|+..+...+.+++.+.++.. .....++
T Consensus 134 ~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl 213 (267)
T PF07672_consen 134 VSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFL 213 (267)
T ss_pred ccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 11 3333444444556566666665443444433333222222222111 1233355
Q ss_pred HHHhcccccccceeeeccc--CCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 361 TGSFSLGMGGIPWVIMSEV--FPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
.+.+.-|..++......|. ..|++.|...|+.-.++++...+.-.+...+
T Consensus 214 ~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i 265 (267)
T PF07672_consen 214 AGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSVI 265 (267)
T ss_pred HHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666677766666654 3456678888888777777766666555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.011 Score=56.67 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHH-HHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHh--c-----------------------
Q 012803 72 SVAEYSLFGSILTI-GAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS--K----------------------- 125 (456)
Q Consensus 72 ~~~~~~~~~s~~~~-~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~----------------------- 125 (456)
+++.+..+-....+ ...+......++++|+++.+++-+....+.....+.++. |
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56677777666555 445557788999999999999987777776666666552 1
Q ss_pred ------hhhHHHHHHHHHHhhhccccc-ccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 126 ------AAWWLDLGRLLVGYGMGLLSY-VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 126 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222122222 3456778999999999999999999999999887766544
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=66.35 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC-cchhhhhhHHHHHHHHHHHHH-H-----HHHHHHHHhcccc----cccceee
Q 012803 307 SIGMIAMVVIQIPMTLLGVLLMDKSGR-RPLLLVSAAGTCLGCLLAALS-F-----LFQVYTGSFSLGM----GGIPWVI 375 (456)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~----~~~~~~~ 375 (456)
++......++..+++++.|+...|.+. |+.++.+.++++++.++.... . ...++.+=+..|. ....-.|
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y 153 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAY 153 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHH
Confidence 377777889999999999999999886 888899999999988887332 1 1112222222222 3444577
Q ss_pred ecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhhHHHHHHHHHHHHHHHHHhcccCCC
Q 012803 376 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK--------------WSSTGTFFAFSAICSLTVLFVAKLVPETK 441 (456)
Q Consensus 376 ~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
+++..-.++|.++.+..+....+|.++||.+...+.. +.+..+.|+.+.+.++..++.....+|..
T Consensus 154 ~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 154 IADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 7777667888888888888778888888877655433 12334566666677777666666666643
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00098 Score=66.52 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhhhhHHHHHHHHHHHHHH-------------HHH-HHHHHhcccccccc
Q 012803 308 IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAALSF-------------LFQ-VYTGSFSLGMGGIP 372 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~ 372 (456)
..........-+..+++|+++|+ +|+++.+.++.++..++..++.+.. ... .+...+..+.-+..
T Consensus 27 ~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~v 106 (654)
T TIGR00926 27 VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCV 106 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCc
Confidence 34444444445566788899987 5999999999998888887775531 111 22222233334666
Q ss_pred eeeecccCCcc---chhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 373 WVIMSEVFPIN---MKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 373 ~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.+...|.++++ .+.....++....++|+.+++.+.+++.+
T Consensus 107 saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~ 149 (654)
T TIGR00926 107 SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG 149 (654)
T ss_pred hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777643 46778888899999999999999999875
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0083 Score=55.19 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh----ccc-----cchHHHHHhH
Q 012803 126 AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFL-----NWRILALIGT 196 (456)
Q Consensus 126 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~----~~l-----~w~~~f~~~~ 196 (456)
.+...++.-.+.+.+.|..........++ +|++.-+..+ .+.++++.+..++. ... +=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 45556667778888888777666666555 4555433222 23333333332221 111 2223445555
Q ss_pred HHHHHHHHHhhccCCCh
Q 012803 197 IPCLVQLIGLCFIPESP 213 (456)
Q Consensus 197 ~~~l~~~~~~~~~~~~p 213 (456)
++.+++.+....+|+.|
T Consensus 191 ~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 66666777777777776
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0042 Score=56.02 Aligned_cols=145 Identities=21% Similarity=0.173 Sum_probs=79.1
Q ss_pred HHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-----c
Q 012803 297 SIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQVYTGSFSLG-----M 368 (456)
Q Consensus 297 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 368 (456)
..++..++... .++........+...+.|.++||+|||+.-+...++.+++.+..-......++.+=...| .
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 44456666543 555555566667777888999999999998888777777776544332222222222222 2
Q ss_pred cccceee-ec----ccCCccchhhHhHHHHH-HHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 369 GGIPWVI-MS----EVFPINMKGSAGSLVTL-VSWLGSWIISFTFNFLMKW---SSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 369 ~~~~~~~-~~----~~~~~~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
+...-++ +. .-+|++..+...+.... .+.+-.+++..+..++.+. +...++.....+++++.++....-+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 2222122 22 23455555666665553 3445555566666666662 23445555555555555544444444
Q ss_pred CC
Q 012803 440 TK 441 (456)
Q Consensus 440 ~~ 441 (456)
..
T Consensus 219 Ny 220 (354)
T PF05631_consen 219 NY 220 (354)
T ss_pred cC
Confidence 43
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0059 Score=56.49 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=92.6
Q ss_pred hhhhHHHHHHHHHHHHH---hccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHH
Q 012803 268 KYAHSLIVGVGLMVLQQ---FGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGT 344 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 344 (456)
+++|..++...+..+.. ...+..+..|...+++ ......+...++.+..++..+.+-|+.||+|-|....++....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 45555555555554433 2223445555555555 1122337778888899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH---------HHHHHHhcccc-ccccee----eecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012803 345 CLGCLLAALSFLF---------QVYTGSFSLGM-GGIPWV----IMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 345 ~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l 410 (456)
+++..+=...... ....+-...+. .+.... ...-.+|+++|+++..+..+.+.+|.+++-.+...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 8888765443111 11112111111 222222 223457899999999999999999999888777766
Q ss_pred Hh
Q 012803 411 MK 412 (456)
Q Consensus 411 ~~ 412 (456)
..
T Consensus 200 V~ 201 (480)
T KOG2563|consen 200 VP 201 (480)
T ss_pred cC
Confidence 65
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=60.21 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=83.2
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHH--HH---HHHHHHHhchhhHHHHHHHHHHhhhcc
Q 012803 69 LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC--II---GWVIIVFSKAAWWLDLGRLLVGYGMGL 143 (456)
Q Consensus 69 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~ 143 (456)
+.-..++.-+....|.+|-.++.--...+ |+ |++.+...+-. .+ ...+.-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 44446778888888888877765432221 33 33433333222 22 222233467899999999999999999
Q ss_pred cccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 144 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
.+......+.|-.++++|...++....+.++|..++.+++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888655
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0057 Score=42.18 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=43.4
Q ss_pred ccchhhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHH
Q 012803 286 GGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG 343 (456)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 343 (456)
+....+..|.+.++++.|.+.. .+..+..+..+++.++.|.++||.++++.+......
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3445556667777777777765 666667778899999999999999998887665443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.006 Score=58.32 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=106.1
Q ss_pred ccccC---CChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH----------hchhhHHHH
Q 012803 66 TNDLG---LSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF----------SKAAWWLDL 132 (456)
Q Consensus 66 ~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~ 132 (456)
.++.+ .++...|.+.....++..++..+..+..-+..-|+++..+.++.++..+.... .++.+-.+.
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lg 323 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALG 323 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEE
Confidence 34455 88999999999999999999999988888888899998888777766554321 122222333
Q ss_pred HHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---------c---chHHHHHhHHHHH
Q 012803 133 GRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL---------N---WRILALIGTIPCL 200 (456)
Q Consensus 133 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l---------~---w~~~f~~~~~~~l 200 (456)
--++..+.....+-....+++|..|+..-|...++..+..++|..++..++..+ + -.+..++..+..+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~l 403 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQL 403 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHH
Confidence 345555555566666777899999999999999999999999998888887666 2 2233444555556
Q ss_pred HHHHHhhccCCCh
Q 012803 201 VQLIGLCFIPESP 213 (456)
Q Consensus 201 ~~~~~~~~~~~~p 213 (456)
+.+.+..++|++.
T Consensus 404 l~l~ll~lLp~~~ 416 (433)
T PF03092_consen 404 LPLPLLFLLPPQK 416 (433)
T ss_pred HHHHHHHHcCCCc
Confidence 6666666677754
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.043 Score=43.78 Aligned_cols=105 Identities=7% Similarity=-0.052 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH-----HHHHHHHhcccccccceeeecccCCc
Q 012803 308 IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL-----FQVYTGSFSLGMGGIPWVIMSEVFPI 382 (456)
Q Consensus 308 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (456)
....+.-....+..++.+.+.+++|.|+.++++.++..+-......... ...+.++.........-.++.+...+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 4444455556667788889999999999999998887765544433221 22333333333444555677888888
Q ss_pred cchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 383 NMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 383 ~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+.+++..++...+.+.+.++|..+.-.+..
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888888876654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.029 Score=54.74 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=70.4
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH--HH-HHHHHH----HHhchh-hHHHHHHHH
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV--CI-IGWVII----VFSKAA-WWLDLGRLL 136 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l 136 (456)
+..-+|-+..+.+.+.+++.+|.++|+.+++++.++--++ ....-+.+ .+ ++..+. ++...+ ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788888999999999999999999999887443222 22221111 11 111111 111111 122334456
Q ss_pred HHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 137 VGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 137 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
.++..|+..|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 677778887777666554322 2235566777777777777777776654
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00037 Score=63.31 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=2.4
Q ss_pred cccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHH
Q 012803 369 GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTF 407 (456)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~ 407 (456)
......+..+..++++|..+-.+....-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888888888888888887778877776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.023 Score=53.59 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=94.2
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH---hc-------hhhHHHHHH
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF---SK-------AAWWLDLGR 134 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~---~~-------~~~~l~~~r 134 (456)
....-|+++..+|..-+...+....+...+.++.+|+|..|.=++++........++.. .+ +...++.+-
T Consensus 284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi 363 (432)
T PF06963_consen 284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI 363 (432)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence 44445999999999999999999999999999999999999888887765544443332 21 233344444
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
.+.-+|.=.+..+..-++.|..|+++||...|......++-.++...++-.+
T Consensus 364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 364 ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555556777788899999999999999999999999888887776655
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.061 Score=50.93 Aligned_cols=103 Identities=17% Similarity=0.315 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhhh---cccCchHHHHHHHHHHHHHHHHHHHh------------------chhhHHHHHHHHHHhh
Q 012803 82 ILTIGAMIGAIMSGKIA---DYIGRRGTMGFSDIVCIIGWVIIVFS------------------KAAWWLDLGRLLVGYG 140 (456)
Q Consensus 82 ~~~~~~~~~~~~~G~l~---dr~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~ 140 (456)
...++..+++.+.+.+. +|+||++.+.++.++..++.++.-.. +++...++.-++.|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 33444445555556665 56899999999999988888776553 1355677778999999
Q ss_pred hcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhcc
Q 012803 141 MGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF 185 (456)
Q Consensus 141 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~ 185 (456)
.+......+.++.+.. +++|..+.++...-..++..++......
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999 5668888888877777777665544443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.3 Score=46.85 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH-------------------------------------HHHHHHH
Q 012803 321 TLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL-------------------------------------FQVYTGS 363 (456)
Q Consensus 321 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~ 363 (456)
.++-+++++|++|++............+.++.+... +.+..-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 667789999999998877666555555544443200 0011222
Q ss_pred hcccccc-cceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 364 FSLGMGG-IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 364 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+.....+ ..|++++|....++..+-.++....+++|..+++.+..++.+
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233 678999999999999999999999999999999999988773
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.087 Score=51.52 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=34.2
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHH
Q 012803 384 MKGSAGSLVTLVSWLGSWIISFTFNFLMK--WSSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 384 ~~~~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~~~~~~~~~~~~~~~~ 433 (456)
..+...|-......+|+++|+.+.+++.- .+.....++.+.+.++++++.
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999988765 344444555555554444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0014 Score=64.12 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=0.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH------------------
Q 012803 297 SIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ------------------ 358 (456)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 358 (456)
..++......+++...+-++.++..++..++.+|..|-+.+-.+.++++++.+++.+.....
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 33444445566888888899999988888999888888888889999999888876531000
Q ss_pred --------------------------------------HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHH
Q 012803 359 --------------------------------------VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGS 400 (456)
Q Consensus 359 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 400 (456)
++.|+.....+++..+|+-|.++++..+...|+......+|-
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 222222222356677899999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 012803 401 WIISFTFNFLM 411 (456)
Q Consensus 401 ~i~~~~~g~l~ 411 (456)
++|-.+++...
T Consensus 191 a~Gf~lg~~~L 201 (539)
T PF03137_consen 191 ALGFLLGSFCL 201 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88877777655
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=52.09 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=88.0
Q ss_pred hhhHHhHHHHHHHcC---CCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHH--------
Q 012803 289 NGIAFYASSIFISAG---FSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLF-------- 357 (456)
Q Consensus 289 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------- 357 (456)
..++.-...+-+..+ ...+++...+-++.++......+...|..|-+.+-.+.++++++.++..+....
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 344444444333333 334466666777888888888888888888899999999999998887653110
Q ss_pred ---------------------------------------------HHHHHHhccc-----ccccceeeecccCCccchhh
Q 012803 358 ---------------------------------------------QVYTGSFSLG-----MGGIPWVIMSEVFPINMKGS 387 (456)
Q Consensus 358 ---------------------------------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 387 (456)
.++.+-+..| .+++..+|+-|...+++...
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 1233333333 35667789999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 388 AGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 388 ~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
..|+...+..+|-++|-.+++.+..
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999888888887765
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.56 Score=43.89 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=87.5
Q ss_pred hhHHhHHHHHHH-cCCCch----HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH---HHH---
Q 012803 290 GIAFYASSIFIS-AGFSGS----IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF---LFQ--- 358 (456)
Q Consensus 290 ~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~--- 358 (456)
.-|+..+...+. .+.+.. .++-...-..++..+....+.|.++.|++++++.+...+...++.+.. ...
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 344444444443 344433 223333334455556677889999999999998888777777666541 111
Q ss_pred HHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHhc
Q 012803 359 VYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWS--STGTFFAFSAICSLTVLFVAKL 436 (456)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 436 (456)
++.+.... .-...++++-...|+++-.++.+......-+|..++..++..+...+ .+.....+.......+.+..++
T Consensus 102 ~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 102 FFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 12334455656667888888999999999999999988888777722 2222333344444444444445
Q ss_pred ccC
Q 012803 437 VPE 439 (456)
Q Consensus 437 ~~~ 439 (456)
+|.
T Consensus 181 LP~ 183 (412)
T PF01770_consen 181 LPM 183 (412)
T ss_pred cCC
Confidence 554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=46.50 Aligned_cols=108 Identities=28% Similarity=0.252 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH--------HHHHHHHhcccccccceeeec
Q 012803 306 GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL--------FQVYTGSFSLGMGGIPWVIMS 377 (456)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 377 (456)
.+.......+....+.++.|.+.||.|||+.+..+......+.+....... .....+.......+...++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 120 (338)
T COG0477 41 YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356777777778888899999999999997766666543333222222111 111123333334566778888
Q ss_pred ccCCc-cchhhHhHHHHH-HHHHHHHHHHHHHHHHHhh
Q 012803 378 EVFPI-NMKGSAGSLVTL-VSWLGSWIISFTFNFLMKW 413 (456)
Q Consensus 378 ~~~~~-~~~~~~~g~~~~-~~~~g~~i~~~~~g~l~~~ 413 (456)
|..|+ +.|+...+.... ...++..++|.+.+.+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 678888888888 5778888888777776654
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.9 Score=37.65 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCC--C
Q 012803 83 LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN--L 160 (456)
Q Consensus 83 ~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~ 160 (456)
..+....++++.+.+..++|.|.++.++...... .+..-+-+.+..++..-...|++.+..+..--+++++.-..+ +
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~l-yiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYAL-YIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 3444556666777999999999999888877654 333334467888999999999999999988888887654221 1
Q ss_pred c-------------hhHHHHHHHHHHHHHHHHHHH
Q 012803 161 R-------------GGFTTVHQLMICIGVSMTYLI 182 (456)
Q Consensus 161 r-------------~~~~~~~~~~~~~G~~~~~~l 182 (456)
| +....+++...-.|..++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 344555666666665555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.55 Score=44.90 Aligned_cols=108 Identities=9% Similarity=0.116 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCch--HHHHH--HHHHHHHHHHHHHH---------hchhhHHHHHHHHHHhhhc
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGF--SDIVCIIGWVIIVF---------SKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r--~~~~~--~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~ 142 (456)
.-.....|.++-.+|..+..+.. .-++| ++.+. .=+++.-..++|.. -++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34567778888888887654431 11222 33322 12223333333432 2456667788999999999
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 184 (456)
-.....+.+..+..++++|..+..+...+..+|..+|..++-
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888899999999988888888888888888876653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.35 Score=45.37 Aligned_cols=103 Identities=16% Similarity=0.019 Sum_probs=64.6
Q ss_pred hhhhhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccccccceeeecccCCcc---chhhHhHHHHHHHH
Q 012803 336 LLLVSAAGTCLGCLLAALS---------------FLFQVYTGSFSLGMGGIPWVIMSEVFPIN---MKGSAGSLVTLVSW 397 (456)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~ 397 (456)
++.++.++..+|.+++.+. +....+.+.+.++.=|...++..|.++++ ++......+....+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 4555666666666664432 11112333344444566677777777654 56778888899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 398 LGSWIISFTFNFLMKWSSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 398 ~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
+|..+++.+.+++.+..++...+.++.++.+.+++.+...+
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999855555555555555555555555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.4 Score=30.94 Aligned_cols=62 Identities=23% Similarity=0.036 Sum_probs=49.2
Q ss_pred HhHHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH
Q 012803 293 FYASSIFISAGFSG---SIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS 354 (456)
Q Consensus 293 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (456)
..+|...++.+.+. +.+.+.+.++.++|++...++.++..+++.+..+.+...+..+.+.+.
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666654 488889999999999999999998787888888888888877777665
|
Note that many members are hypothetical proteins. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.7 Score=39.23 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=72.8
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH---------HHhchhhHHHHHHHHHHhhhc
Q 012803 73 VAEYSLFGSI-LTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII---------VFSKAAWWLDLGRLLVGYGMG 142 (456)
Q Consensus 73 ~~~~~~~~s~-~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~ 142 (456)
....-.+..+ |.+.-.+|.+.+.++-++=. |+..+ ..++-.+..=++ .+-.+-++++..-.+.|+..|
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~-r~l~i-~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG 358 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPDP-RKLTI-PVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG 358 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCCC-ceehH-HHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence 3334455566 88888888777776665543 33322 222222211111 223567788899999999999
Q ss_pred ccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 012803 143 LLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG 183 (456)
Q Consensus 143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 183 (456)
-.....+.+..+..+++++..+-.+.......|...|..++
T Consensus 359 Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 359 YLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred hHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888999999999999887777777777777777766554
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=90.87 E-value=9.9 Score=36.99 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHHHH-------------------------------------HH
Q 012803 318 IPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQ-------------------------------------VY 360 (456)
Q Consensus 318 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~ 360 (456)
++...+-.++++++++.++..+........+.++++..... +.
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~ 152 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM 152 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 34445567889999998877666555555554444320000 11
Q ss_pred HHHhccccc-ccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 361 TGSFSLGMG-GIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 361 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
.-..+.... -..|.+++|..+.++..+..++.....++|.++++.+..++.+
T Consensus 153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112 2468899999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.21 Score=44.04 Aligned_cols=132 Identities=7% Similarity=-0.054 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceeeeec
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEI 155 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 155 (456)
.|.+.-+-.+...+..+.+....||+---+=..+..++.+.+.++.+++++.++=+++-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4555555666667777777888888644333444566778888889999999998888888888887766555444333
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHH----hccc--cchHHHHHhHHHHHH-HHHHhhccCCC
Q 012803 156 TPKNLRGGFTTVHQLMICIGVSMTYLI----GAFL--NWRILALIGTIPCLV-QLIGLCFIPES 212 (456)
Q Consensus 156 ~~~~~r~~~~~~~~~~~~~G~~~~~~l----~~~l--~w~~~f~~~~~~~l~-~~~~~~~~~~~ 212 (456)
+++ ...+.+..+.+.++++|..- ..+. +-|...++...+-++ +...++.++++
T Consensus 143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 222 23333444444444444322 2222 566666666555444 44444444443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.9 Score=39.43 Aligned_cols=36 Identities=11% Similarity=-0.029 Sum_probs=28.3
Q ss_pred cceeeecccCCccchhhHhHHHHHHHHHHHHHHHHH
Q 012803 371 IPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFT 406 (456)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~ 406 (456)
...-..+|..|.++|..+.|+.|..++.-..+.-.+
T Consensus 406 AVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 406 AVTQIMQETVPESERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhE
Confidence 344567899999999999999999998776555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.42 E-value=2.2 Score=37.21 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCch--HHHHHHHHHHHHHHHHHHHh----c---hhhHHHHHHHHHHhhhccccc
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRR--GTMGFSDIVCIIGWVIIVFS----K---AAWWLDLGRLLVGYGMGLLSY 146 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~~~~~~ 146 (456)
-|.+.+.+++...+|+-+..++..|-.+| +.+.+..++.++...+..+. + +...=+++.++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 58999999999999999999988876554 55566655555544443332 1 222234555666677889999
Q ss_pred ccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHh----ccccchHHHHHhHHHHHHHH
Q 012803 147 VVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIG----AFLNWRILALIGTIPCLVQL 203 (456)
Q Consensus 147 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~----~~l~w~~~f~~~~~~~l~~~ 203 (456)
..+.+=+++.|++.|...+.++..-.++=..++-..- .-.+-|..|-++.....++.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHH
Confidence 9999999999999999999888766555444432221 11167788888777766653
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.12 Score=47.08 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHH--HHHHHHHHHHH----------HHhchhhHHHHHHHHHHhhhccc
Q 012803 78 LFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFS--DIVCIIGWVII----------VFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 78 ~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~--~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
.....|.++-.+|....++.--+ ..+|++...+ =+++.-..++| .+.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667888888888877764211 1244433321 12222222222 12345566778889999999999
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~ 184 (456)
....+.+..+..++++|..+-.+......+|..+|..++.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~ 305 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF 305 (309)
T ss_dssp -HHHH-----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988888888888888887776653
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.60 E-value=18 Score=36.13 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=84.5
Q ss_pred HHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhhhHHHHHHHHHHHHHHHH
Q 012803 279 LMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAAGTCLGCLLAALSFLF 357 (456)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (456)
+-....++....+..|+...++..+..+.-.............+++++++|-+ ||-+++.++.++..++..++......
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~ 127 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMI 127 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444556777777777777664444444445555566678888999975 78888888888888876665543111
Q ss_pred H--------------------------HHHH-----HhcccccccceeeecccCC----ccch--hhHhHHHHHHHHHHH
Q 012803 358 Q--------------------------VYTG-----SFSLGMGGIPWVIMSEVFP----INMK--GSAGSLVTLVSWLGS 400 (456)
Q Consensus 358 ~--------------------------~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~--~~~~g~~~~~~~~g~ 400 (456)
. ++.+ ....+.-+...++-.|-++ .+.+ ..-+.......+.|.
T Consensus 128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~ 207 (571)
T KOG1237|consen 128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGA 207 (571)
T ss_pred hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHH
Confidence 0 1111 1222334566666677666 2222 356677777788899
Q ss_pred HHHHHHHHHHHhh
Q 012803 401 WIISFTFNFLMKW 413 (456)
Q Consensus 401 ~i~~~~~g~l~~~ 413 (456)
.++-.+.-+..+.
T Consensus 208 l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 208 LLAQTVLVYIQDN 220 (571)
T ss_pred HHHHHHHHhhhhc
Confidence 8888888888763
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.15 E-value=0.46 Score=44.55 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=72.2
Q ss_pred hHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhh----cCCcchhhh-hhHHHHHHHHHHHHHHHHH----
Q 012803 291 IAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDK----SGRRPLLLV-SAAGTCLGCLLAALSFLFQ---- 358 (456)
Q Consensus 291 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~~~~~~~~~~~~~~~~~~---- 358 (456)
-..|++.+....|.... .......+.+++.+++.|..+|| +||||..+. +....+++++++.......
T Consensus 51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 34455555666665544 44444556677778888999997 688777655 4455555666555431111
Q ss_pred ---------HHHHHhcc----------cccccceeeecccCCccchhh-HhHHHHHHHHHHHHHHHHHHHH
Q 012803 359 ---------VYTGSFSL----------GMGGIPWVIMSEVFPINMKGS-AGSLVTLVSWLGSWIISFTFNF 409 (456)
Q Consensus 359 ---------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~i~~~~~g~ 409 (456)
.....+.. ......-++..|+..++++.+ +++....+..+|+.+|-.+.++
T Consensus 131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 11111111 122334467778777666666 9999999999999888666653
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.23 E-value=14 Score=35.41 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------------HH-------------------------
Q 012803 316 IQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------------FQ------------------------- 358 (456)
Q Consensus 316 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------~~------------------------- 358 (456)
+.++..++-.++.+++.+.+...+........+++++.... ..
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 44555566678888888888776666655555555554311 00
Q ss_pred -HHHHHhcccc-cccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 359 -VYTGSFSLGM-GGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 359 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
+..-....-. .-..+..++|....++..+-.++.+...+++..++..+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000001111 12446778899999999999999999999999999999988876
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.90 E-value=2.7 Score=37.43 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=80.3
Q ss_pred ccccCCChh-hHHHHHHHHHHHHHHHHHHHhhhhcccCchH------HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 012803 66 TNDLGLSVA-EYSLFGSILTIGAMIGAIMSGKIADYIGRRG------TMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVG 138 (456)
Q Consensus 66 ~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (456)
.+.+..+.+ |.=|....|.+|..++.- +-|+=+-+ ++..-.+++.+...+..+.+++|..++.-+.-|
T Consensus 279 ~~g~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EG 353 (409)
T KOG3880|consen 279 SHGFSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEG 353 (409)
T ss_pred ccCCccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 455555543 577888888877554332 11221211 112222334444555667889999889899999
Q ss_pred hhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q 012803 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL 186 (456)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l 186 (456)
+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 354 LlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 354 LLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred hcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 987878877777777778889999999999999999999998887655
|
|
| >PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=81.53 E-value=43 Score=30.65 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHH---HHHHHHHHHhchhhHHHHHHHHHHhhhcccccccceee
Q 012803 76 YSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVC---IIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152 (456)
Q Consensus 76 ~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 152 (456)
.|.......+...+ .++.+++.+.+|.-+.+..+.++. +--.+...+++|......+-.+.|.-.|....-...+.
T Consensus 49 ~GI~~laP~la~~l-~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~TIvFtIPVa 127 (354)
T PF04346_consen 49 AGIMALAPVLAAFL-SPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELAQDPEAGIFSGLILGSMLGATIVFTIPVA 127 (354)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHcCChhhHHHHHHHHHHhhcccEEeehhhh
Confidence 44444555555444 567788999999999998877763 33445666777777766666666665554433332222
Q ss_pred eeccCCCCc-hhHHHHHHH--HHHHHHHHHHHHhccccchHHHH
Q 012803 153 AEITPKNLR-GGFTTVHQL--MICIGVSMTYLIGAFLNWRILAL 193 (456)
Q Consensus 153 ~~~~~~~~r-~~~~~~~~~--~~~~G~~~~~~l~~~l~w~~~f~ 193 (456)
-...++++| -.+.|+... ...+|..++.++.++ +|...+.
T Consensus 128 Lgii~k~D~~y~a~Gil~GiitIPiG~~vggl~~g~-~~~~il~ 170 (354)
T PF04346_consen 128 LGIIEKEDHKYLAKGILAGIITIPIGCFVGGLIAGF-DIGMILI 170 (354)
T ss_pred hhhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHHhC-CHHHHHH
Confidence 333334433 333333322 244566666665543 4544443
|
It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 456 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-33 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 456 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 8e-07 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 6e-04 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 53/429 (12%), Positives = 123/429 (28%), Gaps = 49/429 (11%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L F Y+ + P + G S + S ++I + G
Sbjct: 29 IFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 97 IADYIGRRGTMGF----SDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYI 152
++D R + + V + + + + + + L G+ G+ +
Sbjct: 85 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144
Query: 153 AEITPKNLRG---GFTTVHQLM--ICIGVSMTYLIGAFLNWR-ILALIGTIPCLVQLIGL 206
+ RG + + + F +W L + LV L
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
Query: 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266
+ ++P+ L + ++ + E E + + +
Sbjct: 205 AMMRDTPQ--------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250
Query: 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIF----ISAGFSGSIGMIAMVVIQIPMTL 322
K + + + L ++G ++ Y + + ++ + A IP TL
Sbjct: 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG----IPGTL 306
Query: 323 LGVLLMDK---SGRRPLLLVSAAGTCLGCLLAALSFLFQVYT--------GSFSLGMGGI 371
L + DK R + + ++ ++ G G +
Sbjct: 307 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVML 366
Query: 372 PWVIMSEVFPINMKGSAGSLVTLVSWLGSWIIS--FTFNFLMKWSSTGTFFAFSAICSLT 429
+ E+ P G+A L +LG + + + + G F L
Sbjct: 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 426
Query: 430 VLFVAKLVP 438
V+ + ++
Sbjct: 427 VILLIVVMI 435
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 35/387 (9%), Positives = 110/387 (28%), Gaps = 43/387 (11%)
Query: 66 TNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIG-RRGTMGFSDIVCIIGWVIIVFS 124
+ +S ++ + + +++ +++ + G ++D +G R+ + + ++ +F
Sbjct: 35 HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94
Query: 125 KA---AWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVS---M 178
+ + +G ++ G +G + K R + + V
Sbjct: 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154
Query: 179 TYLIGAFLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADAD 238
++G + ++ + + A A
Sbjct: 155 ASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLA- 213
Query: 239 ISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSI 298
LELF++ L + V + A + +S
Sbjct: 214 -----------------------LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 299 FISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAA--- 352
F + ++ + L++++ G + LL++ + + ++
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 353 ----LSFLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSW-LGSWIISFTF 407
+ L ++ + G I + F + + + L +S
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYI-TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
Query: 408 NFLMKWSSTGTFFAFSAICSLTVLFVA 434
+ + + + +L ++
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLIS 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.29 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.23 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.19 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.18 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.14 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=359.61 Aligned_cols=416 Identities=29% Similarity=0.535 Sum_probs=328.7
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCC--------ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGL--------SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRG 105 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~ 105 (456)
.+..+.++++.+++.+.+|+|.++++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 45677777888899999999999999999988887743 3456889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHH
Q 012803 106 TMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV 167 (456)
Q Consensus 106 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (456)
++.++.+++.+++++++ +++|+++++++|+++|++.|...+...++++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999999 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccc------------cchHHHHHhHHHHHHHHHHhhccCCChhHHHhcCCcHHHHHHHHHHhCC
Q 012803 168 HQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGA 235 (456)
Q Consensus 168 ~~~~~~~G~~~~~~l~~~l------------~w~~~f~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (456)
.+.+..+|.++++.++... +||+.+.+..+..++..+..+++||+|+|+..+++.+++.+..++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999988876443 5888888888888888888899999999999999999999888776543
Q ss_pred CCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCch---HHHHH
Q 012803 236 DADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIA 312 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 312 (456)
+...++..+... ..+. ..+.......+ ..+..........+.+......+..|.+...+..+.... .....
T Consensus 247 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 247 TLATQAVQEIKH-SLDH--GRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHHH-HHHH--HHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHH-HHHh--hhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 211111111111 1111 11111111112 223344455555566666777888888888877766544 45566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccccccceeeecccCC
Q 012803 313 MVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSF-----------LFQVYTGSFSLGMGGIPWVIMSEVFP 381 (456)
Q Consensus 313 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (456)
.++..+++.++.+++.||+|||+.+..+...++++.+.+.... ...++...+..+.+++.+.+.+|++|
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 7788899999999999999999999988888877776655431 11233445556667888899999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhcCC
Q 012803 382 INMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFSAICSLTVLFVAKLVPETKGRTLEEIQASMNP 454 (456)
Q Consensus 382 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
++.|+++.|+.+..+++++++++.+.+.+.+ .+....++++++++++..++.++++||+|+++.||+|+.+|+
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999998887654 223345778888888888888899999999999999988775
Q ss_pred C
Q 012803 455 F 455 (456)
Q Consensus 455 ~ 455 (456)
+
T Consensus 481 ~ 481 (491)
T 4gc0_A 481 E 481 (491)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=317.99 Aligned_cols=383 Identities=15% Similarity=0.122 Sum_probs=282.4
Q ss_pred hHHHHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHH
Q 012803 34 TSAVVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIV 113 (456)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~ 113 (456)
.+..+......+++.+..+.+.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 344455566666677777777777888899999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc---
Q 012803 114 CIIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL--- 186 (456)
Q Consensus 114 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l--- 186 (456)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -c-chHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHH
Q 012803 187 -N-WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILE 263 (456)
Q Consensus 187 -~-w~~~f~~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (456)
+ ||+.|++.+++.++.. +..+++||+|++...+++.+. ..+.+++ .++..++....++...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHH
Confidence 7 9999999888877644 445678888754221111100 0000000 000001111112222466
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHH-cCCCc---hHHHHHHHHHHHHHHHHHHHHHhhc--CCcchh
Q 012803 264 LFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSG---SIGMIAMVVIQIPMTLLGVLLMDKS--GRRPLL 337 (456)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~ 337 (456)
.++++.++...+..++..+.... ...+.+.++++ .+.+. +.......++.+++.++.+++.||+ ++|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYG----ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 77778777777766666555443 34444444444 34443 3777788889999999999999999 998887
Q ss_pred hhhhHHHH-HHHHHHHHH--------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHH-HHHHHHHHH
Q 012803 338 LVSAAGTC-LGCLLAALS--------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFTF 407 (456)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~i~~~~~ 407 (456)
..+..+.. ++.+++... .....+.+.+..+..+....+..|..|++.|+++.|+.+...++ |..++|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655 444443321 11223334434444566678899999999999999999999999 999999999
Q ss_pred HHHHhh-hhhhHHHHHHHHHHHHHHHHHh
Q 012803 408 NFLMKW-SSTGTFFAFSAICSLTVLFVAK 435 (456)
Q Consensus 408 g~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 435 (456)
|.+.+. +....++..+++.++..++...
T Consensus 404 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 404 GYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999994 4444555555555555444443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=303.05 Aligned_cols=345 Identities=11% Similarity=0.063 Sum_probs=264.2
Q ss_pred HHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHH--
Q 012803 44 AVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVII-- 121 (456)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~-- 121 (456)
+++..+..+.+.....+.+|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 110 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWP 110 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence 334445555666677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----c--------
Q 012803 122 -VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----N-------- 187 (456)
Q Consensus 122 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~-------- 187 (456)
+++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+ +
T Consensus 111 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 111 AAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred ccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 88899999999999999999999999999999999999999999999999999999999998776 2
Q ss_pred -----------------chHHHHHhHHHHHHHHHHhhc--cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHH
Q 012803 188 -----------------WRILALIGTIPCLVQLIGLCF--IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIRE 248 (456)
Q Consensus 188 -----------------w~~~f~~~~~~~l~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (456)
||+.|++.+.+.++..+..++ .||+++. +++++
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~------------------------- 242 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSDA------------------------- 242 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCCS-------------------------
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccccc-------------------------
Confidence 999998877766654444333 4554321 00000
Q ss_pred HHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccchhhHHh-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Q 012803 249 YTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFY-ASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLL 327 (456)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 327 (456)
++++.+.+++++++++.++...+..++..........+.+.| ..+.++......+.......++.+++.++.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 243 ----KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp ----STTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122345677888888877777666666554444444444 333222222223477777888999999999999
Q ss_pred HhhcCCcchhhhhhHHHHHHHHHHHHH-----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHH
Q 012803 328 MDKSGRRPLLLVSAAGTCLGCLLAALS-----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWI 402 (456)
Q Consensus 328 ~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i 402 (456)
+||++||+.+..+.++.+++.+++... .....+.+++.....+..+++..|.+|++ ++++.++.. ...+|+.+
T Consensus 319 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~ 396 (438)
T 3o7q_A 319 ISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI 396 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH
Confidence 999999999988888877776665542 12224444555555677888888999866 888888877 67799999
Q ss_pred HHHHHHHHHhh-h-hhhHHHHH
Q 012803 403 ISFTFNFLMKW-S-STGTFFAF 422 (456)
Q Consensus 403 ~~~~~g~l~~~-~-~~~~~~~~ 422 (456)
+|.+.|++.|. + ....+++.
T Consensus 397 ~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 397 VTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp HHHHHHHHHHHHTSSGGGGHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHH
Confidence 99999999995 3 34444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=279.09 Aligned_cols=376 Identities=15% Similarity=0.057 Sum_probs=252.5
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcc-cCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccccc
Q 012803 68 DLGLSVAEYSLFGSILTIGAMIGAIMSGKIADY-IGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSY 146 (456)
Q Consensus 68 ~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 146 (456)
|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCCCC--chhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhcc-CCCh----hH
Q 012803 147 VVPVYIAEITPKNL--RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI-PESP----RW 215 (456)
Q Consensus 147 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~~-~~~p----~~ 215 (456)
...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ |||+.|++.++..++..+..++. ++.. +.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999998 67788889999999999999998876 89999999877766655444322 2211 00
Q ss_pred HHhcCCcHHHHHHHHH---------------HhCCCCCchHHHHHHHHH--------HHHHhhcChhhHHHHhhhhhhhH
Q 012803 216 LAKTGKGIESEAALQR---------------LRGADADISEEAAEIREY--------TETLERLSEGGILELFQRKYAHS 272 (456)
Q Consensus 216 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 272 (456)
..++.+.++..+..++ ......+.++........ .....++++....+..+......
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0011111222221111 001111111110000000 00000000000111111122333
Q ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh-----hhhHHHHHH
Q 012803 273 LIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-----VSAAGTCLG 347 (456)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~ 347 (456)
......+.+.........++.|.....+......+.......++.+++.++.+++.||++||+... .+..+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 444444445554545555666665544444345667778888888999999999999999987655 566666666
Q ss_pred HHHHHHH---------------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 012803 348 CLLAALS---------------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 412 (456)
Q Consensus 348 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~ 412 (456)
++++... .....+.+.......+..+.++.|..|++.|+++.|+.+...++|..++|.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554432 1112333444444467778899999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 012803 413 WSSTGTFFAFSAICSLTVLFVAKLVPETKGR 443 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
.++...+...++++++..++.+...++.+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=277.19 Aligned_cols=348 Identities=15% Similarity=0.066 Sum_probs=270.2
Q ss_pred HHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHH
Q 012803 43 VAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIV 122 (456)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 122 (456)
+.++..+....+.+...+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34445555566677778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHhHHH
Q 012803 123 FSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIP 198 (456)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~ 198 (456)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 899999998888
Q ss_pred HHHHHH-HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHH
Q 012803 199 CLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGV 277 (456)
Q Consensus 199 ~l~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (456)
.++..+ ..+++||++++.. + +++.+.++++++++|.++...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA---P--------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC---C--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCc---c--------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777655 4466787753210 0 011233455677888888877777
Q ss_pred HHHHHHHhccchhhHHhHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHH-HHHHHH--HHHH-
Q 012803 278 GLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAG-TCLGCL--LAAL- 353 (456)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~- 353 (456)
++............+.|..+..+.+....+.......++.+++.++.+++.||++++. ..+... ...+.. ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 7777766666677777777766655555567788888899999999999999988722 222222 111111 1111
Q ss_pred ---H----HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 012803 354 ---S----FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAIC 426 (456)
Q Consensus 354 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~ 426 (456)
. .....+.++......+...++..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+++...+...++.
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 0 112233344444456778888999998 89999999999999999999999999998866555555544443
Q ss_pred HH
Q 012803 427 SL 428 (456)
Q Consensus 427 ~~ 428 (456)
++
T Consensus 366 ~~ 367 (375)
T 2gfp_A 366 LL 367 (375)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-30 Score=249.47 Aligned_cols=381 Identities=12% Similarity=0.037 Sum_probs=219.7
Q ss_pred ccccccC------CChhhHHHHHHHHHHHHHHHHHHHhhhhccc-CchHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHH
Q 012803 64 GITNDLG------LSVAEYSLFGSILTIGAMIGAIMSGKIADYI-GRRGTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRL 135 (456)
Q Consensus 64 ~i~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 135 (456)
.+.+++| ++..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.++.++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4677888 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HHHhhhcccccccceeeeeccCCCCchhHHHH---HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 136 LVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 136 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
+.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 8899999999999998876 8999999988887766555543
Q ss_pred c-CCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHH---------------------------HHHHhhcChhh
Q 012803 209 I-PESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREY---------------------------TETLERLSEGG 260 (456)
Q Consensus 209 ~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 260 (456)
. ++.++...++++..+..+......+......+........ ...++ ..+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 276 (524)
T 2xut_A 198 GRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGA 276 (524)
T ss_dssp SSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGG
T ss_pred hcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccch
Confidence 3 2211000000000000000000000000000000000000 00000 00011
Q ss_pred HHHH-----------hhh-hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHHcCC----CchHHHHHHHHHHHHHHHHH
Q 012803 261 ILEL-----------FQR-KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF----SGSIGMIAMVVIQIPMTLLG 324 (456)
Q Consensus 261 ~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 324 (456)
+.++ .++ +.......................+.+. ......+. ..+.......++.+++..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (524)
T 2xut_A 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWI-LQANDMVKPQWFEPAMMQALNPLLVMLLIPFN 355 (524)
T ss_dssp GTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHH-HHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGT
T ss_pred hhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH-HhHHhcCCCeeecHHHHHHHHHHHHHHhHHHH
Confidence 1000 011 1111111111111111111111122222 22222222 23444444444555555555
Q ss_pred HHHH----hhcCCc----chhhhhhHHHHHHHHHHHH---------------HHHHHHHHHHhcccccccceeeecccCC
Q 012803 325 VLLM----DKSGRR----PLLLVSAAGTCLGCLLAAL---------------SFLFQVYTGSFSLGMGGIPWVIMSEVFP 381 (456)
Q Consensus 325 g~l~----d~~g~~----~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (456)
+++. ||.++| +.+..+.++.+++++++.. .....++.+++.....+..+++..|..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 435 (524)
T 2xut_A 356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435 (524)
T ss_dssp TTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5443 444332 3445566666665554432 1112233444444456777889999999
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 012803 382 INMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSS------------TGTFFAFSAICSLTVLFVAKLVPETKGRTLE 446 (456)
Q Consensus 382 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
++.||+++|+.+...++|+.++|.+.|.+.+... ...+++.++++++..++.++..++.++++.+
T Consensus 436 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 436 KAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999999999999999887311 1125555555555555555555554444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-31 Score=251.07 Aligned_cols=359 Identities=11% Similarity=0.069 Sum_probs=224.2
Q ss_pred cccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHH---HHHHhchh-hHHHHH
Q 012803 59 SPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWV---IIVFSKAA-WWLDLG 133 (456)
Q Consensus 59 ~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~ 133 (456)
.+.+|. +++++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.. ...+++.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556664 5677999999999999999999999999999999999999999998887765322 12222221 123455
Q ss_pred HHHHHhhhcccccccceeeeeccCC--CCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
+++.|++.+...+.....+.++.++ ++|+...+....+.++|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 6666666555444444444455433 3456667777777788888888888776 7999999877776555555555
Q ss_pred cCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHHhccc
Q 012803 209 IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGV 288 (456)
Q Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
.+|+++. +.+.++.. +.+ .++....+.+++++++.++...+..+.....+....
T Consensus 187 ~~~~~~~---~~~~~~~~-------~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 187 AKTDAPS---SATVANAV-------GAN----------------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SCCCCSC---SSCSSSSS-------SSC----------------CCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccc---cccccccc-------ccc----------------cccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 5443311 00000000 000 000111234556777777665554333333322223
Q ss_pred hhhHHhHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH--H-H---HHH
Q 012803 289 NGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS--F-L---FQV 359 (456)
Q Consensus 289 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~ 359 (456)
.+.+.|....++.. ....+.......++.+++.++.++++||+|||+.+..+..+.+++.+.+... . . ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34555554332211 1112355566667888899999999999999998887777776665544321 0 0 111
Q ss_pred HHHHhcccccccceeeecccCCccchhhHhHHH-HHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcc
Q 012803 360 YTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLV 437 (456)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
+.+.......+..+.++.|.+|++.|+++.++. +...++|++++|.+.|++.+. +....+...+++.++..++.+...
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 112222222334567889999999999999994 888889999999999999984 444455555655566555555555
Q ss_pred cCCCCC
Q 012803 438 PETKGR 443 (456)
Q Consensus 438 ~~~~~~ 443 (456)
+++++.
T Consensus 401 ~~~~~~ 406 (417)
T 2cfq_A 401 SGPGPL 406 (417)
T ss_dssp CCSCTT
T ss_pred cCCCch
Confidence 554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=131.98 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=127.1
Q ss_pred ccccccccc-cCCChhhHHHHHHHHHHHHHHHHHHHhhhhccc--CchHHHHHHHHHHH-HHHHHHHHh--chhhHHHHH
Q 012803 60 PAQSGITND-LGLSVAEYSLFGSILTIGAMIGAIMSGKIADYI--GRRGTMGFSDIVCI-IGWVIIVFS--KAAWWLDLG 133 (456)
Q Consensus 60 ~~~~~i~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~--G~r~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~ 133 (456)
...|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 344444444 899999999999999999999999999999999 99999988877776 666666665 367778888
Q ss_pred HHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHH-HHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhhc
Q 012803 134 RLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 208 (456)
Q Consensus 134 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~~ 208 (456)
.++.|++.+...+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+ ||+..|++.+++.+++.+..++
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888888889999999999999999999999999 999999988776 8999999988887776665554
Q ss_pred c
Q 012803 209 I 209 (456)
Q Consensus 209 ~ 209 (456)
+
T Consensus 433 ~ 433 (451)
T 1pw4_A 433 V 433 (451)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=120.24 Aligned_cols=142 Identities=12% Similarity=0.012 Sum_probs=117.6
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
+.+.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 364 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ 364 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence 345569999999999999999999999999999999999999999999999999988888887765544 8889999999
Q ss_pred ccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----c-chHHHHHhHHHHHHHHHHhhcc
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQLIGLCFI 209 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----~-w~~~f~~~~~~~l~~~~~~~~~ 209 (456)
.+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+ | ++..|++.++..++..+..+..
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999866 888888777 5568899999888776 6 8888887665555444443433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=122.60 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=117.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccccccccee
Q 012803 72 SVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVY 151 (456)
Q Consensus 72 ~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 151 (456)
+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888887777778888888888888888777666677789
Q ss_pred eeeccCCCCchhHHHH-HHHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCCCh
Q 012803 152 IAEITPKNLRGGFTTV-HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPESP 213 (456)
Q Consensus 152 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~~p 213 (456)
+.|.+|++.|+++.+. ++....+|..++|.+++.+ |++..|.+.+++.+++.+.. ++.||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4778889999999988876 77888888888877766554 4456544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=119.98 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHhHHHHH--HHcCCC---chHHHHHHHHHHHHHHHHHHHHHhh-cCCcchhhhhhH
Q 012803 269 YAHSLIVGVGLMVLQQFGGVNGIAFYASSIF--ISAGFS---GSIGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAA 342 (456)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 342 (456)
..+......++..+..+.....++.|+.... ++.+.+ .++......++..++.++.|+++|| +|||+.+..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3444444444444444444455555555431 113433 3477888889999999999999999 899999999998
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhcccccccceeeecccCCccc--hhhHhHHHHHHHHHHHHHHHHHHHHHHh-h
Q 012803 343 GTCLGCLLAALS------FLFQVYTGSFSLGMGGIPWVIMSEVFPINM--KGSAGSLVTLVSWLGSWIISFTFNFLMK-W 413 (456)
Q Consensus 343 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~~~~~g~l~~-~ 413 (456)
+.+++.+++... ....++.+.+.....+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+ .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888776643 223344555555567788899999999888 7888898999999999999999999988 4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 012803 414 SSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~ 433 (456)
++...+++.+...++..++.
T Consensus 174 g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 174 GYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=111.51 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=111.1
Q ss_pred hhHHhHHHHHHHcCCCch---HHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHHHH------HHHH
Q 012803 290 GIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFL------FQVY 360 (456)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 360 (456)
......+.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+.+++.+....... ..++
T Consensus 18 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 18 IYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333445555555555543 6777888899999999999999999999999999888888877665422 1233
Q ss_pred HHHhcccccccceeeecccCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcccC
Q 012803 361 TGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFVAKLVPE 439 (456)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
.+.......+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+. ++...+++.+...++..++.....||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 34444445677788899999999999999999999999999999999999884 44445555555555544434455555
Q ss_pred CC
Q 012803 440 TK 441 (456)
Q Consensus 440 ~~ 441 (456)
++
T Consensus 178 ~~ 179 (375)
T 2gfp_A 178 TR 179 (375)
T ss_dssp CS
T ss_pred cC
Confidence 43
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-10 Score=113.92 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=115.8
Q ss_pred hhhhHHHHHHHHHHHHHhccchhhHHhHHHHHH------HcCCCchHHHHHHHHHHHHHHHHHHHHHhhc-CCcchhhhh
Q 012803 268 KYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFI------SAGFSGSIGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVS 340 (456)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~ 340 (456)
+.++......++..+..+.....++.|+...++ .+....+.......++.+++.++.|+++||+ |||+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444555555555555554445555555554444 3444456888888999999999999999999 999999998
Q ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHhcccccccceeeecccCCccchhhHhHH---HHHHHHHHHHHHHHHHHHH
Q 012803 341 AAGTCLGCLLAALSF-------LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL---VTLVSWLGSWIISFTFNFL 410 (456)
Q Consensus 341 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~i~~~~~g~l 410 (456)
.++.+++.+++.... ...++.+.+.....+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777765532 122344444455567788999999999999876666 8899999999999999999
Q ss_pred Hh-hhhhhHHHHHHHHHHHHHHH
Q 012803 411 MK-WSSTGTFFAFSAICSLTVLF 432 (456)
Q Consensus 411 ~~-~~~~~~~~~~~~~~~~~~~~ 432 (456)
.+ .++...+++.+.+.++..++
T Consensus 172 ~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 172 LKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHH
Confidence 88 44444555555444444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=110.63 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=111.2
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhc-----hhhHHH-HHH
Q 012803 61 AQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSK-----AAWWLD-LGR 134 (456)
Q Consensus 61 ~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r 134 (456)
..|.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+. ..-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34557778888888888888888899999999999999999999999999888888777665431 111122 222
Q ss_pred HHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc----------cchHHHHHhHHHHHHHHH
Q 012803 135 LLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL----------NWRILALIGTIPCLVQLI 204 (456)
Q Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l----------~w~~~f~~~~~~~l~~~~ 204 (456)
+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+...+ ++.+.|++.+.++++..+
T Consensus 379 ~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 22233322 3456678899999999999999999998888888776554322 456678888887777554
Q ss_pred -HhhccCCCh
Q 012803 205 -GLCFIPESP 213 (456)
Q Consensus 205 -~~~~~~~~p 213 (456)
.++++||+.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 457899984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 456 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 4e-18 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 1e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 84.0 bits (206), Expect = 4e-18
Identities = 62/436 (14%), Positives = 125/436 (28%), Gaps = 41/436 (9%)
Query: 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGK 96
+ L F Y+ + P + G S + S ++I + G
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLV----EQGFSRGDLGFALSGISIAYGFSKFIMGS 81
Query: 97 IADYIGRRGTMGFSDIVCIIGWVIIVFSKAA----WWLDLGRLLVGYGMGLLSYVVPVYI 152
++D R + I+ + + F A + + L G+ G+ +
Sbjct: 82 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141
Query: 153 AEITPKNLRGGFTTVHQLMICIGVSMTYLIGAF------LNWRILALIGTIPCLVQLIGL 206
+ RGG +V +G + L+ L + LV L
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 207 CFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266
+ ++P+ L + ++ + E E + + +
Sbjct: 202 AMMRDTPQS--------------CGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 247
Query: 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVVIQIPMTLLGVL 326
K + + + L ++G ++ Y + A S IP TLL
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307
Query: 327 LMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQVYT-----------GSFSLGMGGIPWVI 375
+ DK R L + + ++ G G + +
Sbjct: 308 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 367
Query: 376 MSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM--KWSSTGTFFAFSAICSLTVLFV 433
E+ P G+A L +LG + + + G F L V+ +
Sbjct: 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427
Query: 434 AKLVPETKGRTLEEIQ 449
++ K R + +Q
Sbjct: 428 IVVMIGEKRRHEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 25/379 (6%), Positives = 85/379 (22%), Gaps = 9/379 (2%)
Query: 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFS 124
+ + +S ++ + + +++ +++ + G ++D +G R + + ++ +
Sbjct: 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93
Query: 125 KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGA 184
L L+ G+ A + +
Sbjct: 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPA--------VEAFIEKVSRRSNFEFGRARM 145
Query: 185 FLNWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAA 244
F + + + + A+
Sbjct: 146 FGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH 205
Query: 245 EIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISAGF 304
LE + + L S V F +
Sbjct: 206 SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT 265
Query: 305 SGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQVYTGSF 364
+ + A ++ P+ + + + ++ A + +
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325
Query: 365 SLGMGGIPWVIMSEVFPINMKGSA-GSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFS 423
+ + ++ F + + L +S + + +
Sbjct: 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385
Query: 424 AICSLTVLFVAKLVPETKG 442
+ +L ++ G
Sbjct: 386 GLVALGFTLISVFTLSGPG 404
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 456 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.49 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.3 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-40 Score=312.73 Aligned_cols=383 Identities=14% Similarity=0.110 Sum_probs=260.7
Q ss_pred HHHHHHHHHhhhhhhccccceecccccccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHH
Q 012803 37 VVLSTFVAVCGSYVFGSAIGYSSPAQSGITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCII 116 (456)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 116 (456)
+|.+...++++.+....+...++...|.+. |+|+|.+|.|++.+++.+++.++++++|+++||+|||+++..+.++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 344444444444444434344455566565 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----chhhHHHHHHHHHHhhhcccccccceeeeeccCCCCchhHHHHHHHHHHHHHHHHHHHhccc-----c
Q 012803 117 GWVIIVFS----KAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL-----N 187 (456)
Q Consensus 117 ~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~ 187 (456)
+.++++++ ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++... +
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 181 (447)
T d1pw4a_ 102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181 (447)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence 99998876 47889999999999999999999999999999999999999999999999999998877654 8
Q ss_pred chHHHHHhHHHHHHHH-HHhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhh
Q 012803 188 WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQ 266 (456)
Q Consensus 188 w~~~f~~~~~~~l~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (456)
||+.|++.+.+.++.. +.+.+.+|+|+........+ ..++..++..+..+++...++...+..++
T Consensus 182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (447)
T d1pw4a_ 182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE--------------YKNDYPDDYNEKAEQELTAKQIFMQYVLP 247 (447)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT--------------TCCC-------------CCTHHHHHHTSS
T ss_pred ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh--------------hhhhcccchhhccccccchhhHHHHHHHc
Confidence 9999999887776644 44456666654221111110 00001111111112222233444556667
Q ss_pred hhhhhHHHHHHHHHHHHHhccchhhHHhHHHHHHH-cCCC---chHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhH
Q 012803 267 RKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAA 342 (456)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 342 (456)
++..+......++.......... +.+.++.+ .+.+ .+.......+..+++.++.|++.||++|++.......
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 323 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILD----WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 323 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchh----hhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccch
Confidence 77777666666555554433333 34433333 2333 3467778888999999999999999998775544433
Q ss_pred HHHHHHHHHHHH-----------HHHHHHHHHhcccccccceeeecccCCccchhhHhHHHHHHHHHH-HHHHHHHHHHH
Q 012803 343 GTCLGCLLAALS-----------FLFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLG-SWIISFTFNFL 410 (456)
Q Consensus 343 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-~~i~~~~~g~l 410 (456)
...+........ ....+..++...+..+....+..|.+|++.|+++.|+.+...+++ ..++|.+.|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~ 403 (447)
T d1pw4a_ 324 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403 (447)
T ss_dssp HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222211 122233344444556677788899999999999999999998874 56689999999
Q ss_pred Hhh-hhhhHHHHHHHHHHHHHHHHHhccc
Q 012803 411 MKW-SSTGTFFAFSAICSLTVLFVAKLVP 438 (456)
Q Consensus 411 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.|. +....++...++.++..++...+.+
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 994 4445555555555555554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.3e-29 Score=237.36 Aligned_cols=366 Identities=11% Similarity=0.042 Sum_probs=234.4
Q ss_pred ceecccccc-cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHH----
Q 012803 56 GYSSPAQSG-ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWL---- 130 (456)
Q Consensus 56 ~~~~~~~~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l---- 130 (456)
+...|.+|. +.+++|+|+++.|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+....
T Consensus 24 ~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T d1pv7a_ 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344666775 677899999999999999999999999999999999999999999999999999888887766554
Q ss_pred HHHHHHHHhhhcccccccceeeeeccCC--CCchhHHHHHHHHHHHHHHHHHHHhccc---cchHHHHHhHHHHH-HHHH
Q 012803 131 DLGRLLVGYGMGLLSYVVPVYIAEITPK--NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCL-VQLI 204 (456)
Q Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l---~w~~~f~~~~~~~l-~~~~ 204 (456)
++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+ +|+..+........ ...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (417)
T d1pv7a_ 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence 3445555555444444443333333322 2334566677777778888888887766 56666666555444 4555
Q ss_pred HhhccCCChhHHHhcCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhhcChhhHHHHhhhhhhhHHHHHHHHHHHHH
Q 012803 205 GLCFIPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQ 284 (456)
Q Consensus 205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (456)
..+..+|+|+.. .+.++. .+..++.......+.++++..+.............
T Consensus 184 ~~~~~~~~~~~~---~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T d1pv7a_ 184 LFFAKTDAPSSA---TVANAV------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp HHSSCCCSCSSS---CSSHHH------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccch---hhhhhh------------------------hhhcccccccccccccccccccchhhhhHHHHHHH
Confidence 556666665311 000000 00001111122222333333333333333332222
Q ss_pred hccchhhHHhHHHHHHHc---CCCchHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHH------H
Q 012803 285 FGGVNGIAFYASSIFISA---GFSGSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALS------F 355 (456)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~ 355 (456)
.........+........ ............++..++..+.+++.||.++|+.+..+..+.+++.+.+... .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (417)
T d1pv7a_ 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316 (417)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhh
Confidence 111111111111111111 1112255666677888889999999999999999998888888777766542 2
Q ss_pred HHHHHHHHhcccccccceeeecccCCccchhhHhHHHH-HHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHH
Q 012803 356 LFQVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVT-LVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFV 433 (456)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~i~~~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~ 433 (456)
....+.+.......+...++.+|.+|++.|+++.|+.. ....+|..++|.+.|++.| .+....+++.+++.++..++.
T Consensus 317 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 396 (417)
T d1pv7a_ 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 22233444444556777889999999999999999865 5567999999999999999 555566777777777777777
Q ss_pred HhcccCCCCCCHHHH
Q 012803 434 AKLVPETKGRTLEEI 448 (456)
Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (456)
.+.++++++.+.++.
T Consensus 397 ~~~l~~~~~~~~~r~ 411 (417)
T d1pv7a_ 397 VFTLSGPGPLSLLRR 411 (417)
T ss_dssp HHHSCCSSCTTHHHH
T ss_pred HHhhcCCCccchhHh
Confidence 777777666655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=8.7e-15 Score=135.31 Aligned_cols=147 Identities=8% Similarity=0.015 Sum_probs=128.3
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhhhccc
Q 012803 65 ITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLL 144 (456)
Q Consensus 65 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 144 (456)
..++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence 44555667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeccCCCCchhHHHHH-HHHHHHHHHHHHHHhccc----cchHHHHHhHHHHHHHHHHh-hccCC
Q 012803 145 SYVVPVYIAEITPKNLRGGFTTVH-QLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGL-CFIPE 211 (456)
Q Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~-~~~~~ 211 (456)
.+...+++.|.+|+++|++..++. +....+|..++|.+++.+ ||+..|++.+++.++..+.. +.+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999975 556778999999888776 89999999888877655444 44444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4e-12 Score=118.72 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=112.0
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHhhhhcccCchHHHHHHHHHHHHHHHHHHH-----hchhhHHHHHHHHHH
Q 012803 64 GITNDLGLSVAEYSLFGSILTIGAMIGAIMSGKIADYIGRRGTMGFSDIVCIIGWVIIVF-----SKAAWWLDLGRLLVG 138 (456)
Q Consensus 64 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G 138 (456)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+..........+....... ..+.+...+.-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999876554444333332222221 346777778888889
Q ss_pred hhhcccccccceeeeeccCCCCchhHHHHHHHHHHH-HHHHHHHHhccc----cchHHHHHhHHHHHHHHHHhh
Q 012803 139 YGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICI-GVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLC 207 (456)
Q Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l----~w~~~f~~~~~~~l~~~~~~~ 207 (456)
++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.+ ||+..|++.+...+++.++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 988888888888999999999999999998877666 566778777665 899999887777666554443
|