Citrus Sinensis ID: 012885

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccEEcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccEEccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHcccccccccccHHHHHHHHHHccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccHHccHHHEEEcccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MGNPSIEAAIKLEKKRADTKLKeldrestdnpiMRLFNRLVRDSLTREKERLEKAEESFKALDlnklrgcfgfdtffatdvrrfgdggifignlrkpIEEVIPKLEKKLSEAAGRDVVVWFMEEktnditkqacavqpkaEIDLQFELTklstpwgyVSAIVLCVATFGTIAIMsglflkpdatfddyLANVVPLFGGLITILGVSEISTRLTAArygvklspsflvpsnwtgclgvmnnyesllpnkkalfdipvaRTASAYLTSLALAVAAFVadgsfnggdnalfirpqffynnpllsFIQYVigpytddlgnvlpyavegvgvpcdplaFAGLLGMVVTslnllpcgrleggrIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFatffrggeeipakdeitplgdnryAWGIVLGLICFLtlfpngggtfnssffgdpffrg
Flexible Loop (DISEMBL)
mgnpsieaAIKLekkradtklkeldrestdnpimrlfnrlvrdSLTREKERLEKAEEsfkaldlnklrgCFGFDTFFATDVRRFGDGGifignlrkpiEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTfnssffgdpffrg
Low Complexity Region (SEG)
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVartasayltslalavaaFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATslllgigglsgsvlclAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLfpngggtfnssffgDPFFRG
Disordered region (IsUnstruct)
***********************************LFNRL******************FKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGD*****
Disordered Region (DISOPRED)
****************************************************************NKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPK*********TKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG
Disordered Region (DISEMBL)
MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG
Disordered Region (DISPRO)
**NPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRD*******RLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFF**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNPSIxxxxxxxxxxxxxxxxxxxxxSTDNPIMRLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRYAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
307135955	572	sterol regulatory element-binding protei	1.0	0.793	0.883	0.0
449465097	572	PREDICTED: uncharacterized protein LOC10	1.0	0.793	0.883	0.0
255562204	613	sterol regulatory element-binding protei	1.0	0.740	0.883	0.0
449484390	573	PREDICTED: uncharacterized LOC101220315	1.0	0.792	0.876	0.0
225429195	579	PREDICTED: uncharacterized protein LOC10	0.971	0.761	0.897	0.0
297736406	456	unnamed protein product [Vitis vinifera]	0.971	0.967	0.897	0.0
357468175	563	Peptidase M50 family [Medicago truncatul	1.0	0.806	0.865	0.0
356495811	531	PREDICTED: uncharacterized protein LOC10	0.991	0.847	0.865	0.0
15220875	573	ethylene-dependent gravitropism-deficien	1.0	0.792	0.859	0.0
110740640	573	hypothetical protein [Arabidopsis thalia	1.0	0.792	0.857	0.0

>gi|307135955|gb|ADN33815.1| sterol regulatory element-binding protein site 2 protease [Cucumis melo subsp. melo]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/454 (88%), Positives = 430/454 (94%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLNKLKSCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P ATFDDY+ANVVPLFGG I+ILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 356

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLL 300
           YESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA++IRPQFFYNNPLL
Sbjct: 357 YESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYIRPQFFYNNPLL 416

Query: 301 SFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360
           SFIQ+VIGPY+DDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ
Sbjct: 417 SFIQFVIGPYSDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 476

Query: 361 AMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRY 420
           AMFGR+TA LLSFATSL+LGIGGLSGSVLCLAWGLFATFFRGGEE+PA DEITPLGD+RY
Sbjct: 477 AMFGRSTAALLSFATSLVLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRY 536

Query: 421 AWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           AWG+VLGLICFLTLFPNGGGTF+S FF  PFFRG
Sbjct: 537 AWGVVLGLICFLTLFPNGGGTFSSPFFSAPFFRG 570

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465097|ref|XP_004150265.1| PREDICTED: uncharacterized protein LOC101220315 [Cucumis sativus]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/454 (88%), Positives = 430/454 (94%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDL+KLRGCFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLSKLRGCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P ATFDDY+ANVVPLFGG I+ILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 356

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLL 300
           YESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA++IRPQFFYNNPLL
Sbjct: 357 YESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYIRPQFFYNNPLL 416

Query: 301 SFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360
           SFIQ+VIGPY+DDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ
Sbjct: 417 SFIQFVIGPYSDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 476

Query: 361 AMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRY 420
           AMFGR+TA LLSFATSL+LGIGGLSGSVLCLAWGLFATFFRGGEE+PA DEITPLGD+RY
Sbjct: 477 AMFGRSTAALLSFATSLVLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRY 536

Query: 421 AWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           AWG+VLGLIC LTLFPNGGGTF+S FF  PFFRG
Sbjct: 537 AWGVVLGLICLLTLFPNGGGTFSSPFFSAPFFRG 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562204|ref|XP_002522110.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis] gi|223538709|gb|EEF40310.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/454 (88%), Positives = 433/454 (95%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MG+PSIEAAIKLEKKRAD KLKELDRES+DNP++  FNRL+RDSL REKERLE AEE+FK
Sbjct: 158 MGSPSIEAAIKLEKKRADRKLKELDRESSDNPLVGFFNRLLRDSLAREKERLEMAEEAFK 217

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKK+SEAAGR+VV+W
Sbjct: 218 ALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKISEAAGREVVIW 277

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEE+ ++ITKQAC VQPK+E+DLQFE TKLSTPWGY+SA+ LCV TFGTIA+MSG FLK
Sbjct: 278 FMEERNDNITKQACVVQPKSEMDLQFESTKLSTPWGYISAVALCVTTFGTIALMSGFFLK 337

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           PDATFDDY+A+VVPLFGG ++ILG SEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 338 PDATFDDYIADVVPLFGGFLSILGASEITTRITAARYGVKLSPSFLVPSNWTGCLGVMNN 397

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLL 300
           YESLLPNKKALFDIPVARTASAYLTSL LA+AAF ADGSFNGGDNAL+IRP+FFYNNPLL
Sbjct: 398 YESLLPNKKALFDIPVARTASAYLTSLVLAIAAFAADGSFNGGDNALYIRPEFFYNNPLL 457

Query: 301 SFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360
           SFIQYVIGPYTDDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGR+AQ
Sbjct: 458 SFIQYVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRMAQ 517

Query: 361 AMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRY 420
           AMFGR+TA LLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEE+PAKDEITPLG +RY
Sbjct: 518 AMFGRSTATLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEELPAKDEITPLGSDRY 577

Query: 421 AWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           AWGIVLGLICFLTLFPNGGGTF+S FF DPFFRG
Sbjct: 578 AWGIVLGLICFLTLFPNGGGTFSSPFFSDPFFRG 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484390|ref|XP_004156868.1| PREDICTED: uncharacterized LOC101220315 [Cucumis sativus]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/455 (87%), Positives = 428/455 (94%), Gaps = 1/455 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRE  +NPI+ LFNR+ RD+L +EKERLEKAEE+FK
Sbjct: 117 MGNPSIEAAIKLEKKRADRKLKELDREGANNPIVGLFNRIARDNLEKEKERLEKAEETFK 176

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDL+KLRGCFGF+TFFATDVRRFGDGGIFIGNLR+PIEEVIP+LEKKLSEAAGR+VV+W
Sbjct: 177 ALDLSKLRGCFGFNTFFATDVRRFGDGGIFIGNLRRPIEEVIPQLEKKLSEAAGREVVLW 236

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEKT+DITKQ C VQPKAEIDLQFE TKLSTP GY SAI LCVATFGTIA+MSG FLK
Sbjct: 237 FMEEKTDDITKQVCMVQPKAEIDLQFESTKLSTPLGYFSAITLCVATFGTIALMSGFFLK 296

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEI-STRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           P ATFDDY+ANVVPLFGG I+ILGVSE+ S  +TAARYGVKLSPSFLVPSNWTGCLGVMN
Sbjct: 297 PGATFDDYIANVVPLFGGFISILGVSEVYSNEVTAARYGVKLSPSFLVPSNWTGCLGVMN 356

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPL 299
           NYESLLPNKKALFDIPVARTASAYLTSLALAV+AFV DG FNGGDNA++IRPQFFYNNPL
Sbjct: 357 NYESLLPNKKALFDIPVARTASAYLTSLALAVSAFVIDGGFNGGDNAMYIRPQFFYNNPL 416

Query: 300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
           LSFIQ+VIGPY+DDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIA
Sbjct: 417 LSFIQFVIGPYSDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 476

Query: 360 QAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNR 419
           QAMFGR+TA LLSFATSL+LGIGGLSGSVLCLAWGLFATFFRGGEE+PA DEITPLGD+R
Sbjct: 477 QAMFGRSTAALLSFATSLVLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDR 536

Query: 420 YAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           YAWG+VLGLIC LTLFPNGGGTF+S FF  PFFRG
Sbjct: 537 YAWGVVLGLICLLTLFPNGGGTFSSPFFSAPFFRG 571

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429195|ref|XP_002271890.1| PREDICTED: uncharacterized protein LOC100241185 [Vitis vinifera] gi|147804805|emb|CAN73523.1| hypothetical protein VITISV_010704 [Vitis vinifera]

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/441 (89%), Positives = 422/441 (95%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRES+DNP++ LFNR+VRDSL REKERLEKAEE+FK
Sbjct: 124 MGNPSIEAAIKLEKKRADRKLKELDRESSDNPVVGLFNRVVRDSLAREKERLEKAEEAFK 183

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTF+ATDVRRFGDGGIFIGNLR+PIEEVIPKLEKKLSEAAGR+VV+W
Sbjct: 184 ALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLW 243

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEK NDITKQ C VQPKAE+DLQFE TKLSTPWGY+S+IVLCVATFGTIA+MSG FLK
Sbjct: 244 FMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLK 303

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P+ATFDDYLA+VVPLF G +TILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 304 PNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 363

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLL 300
           YESLLPNKKALFDIPVARTASAY+TSL LAVAAF+ADGSFNGGDNAL+IRPQFFYNNPLL
Sbjct: 364 YESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYIRPQFFYNNPLL 423

Query: 301 SFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360
           SFIQ+VIGPYTDDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ
Sbjct: 424 SFIQFVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 483

Query: 361 AMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRY 420
           A+FGRN A LLSF TSLLLGIGGLSGSVLCLAWGLFATFFRGGEE+PA DEITPLGD+RY
Sbjct: 484 ALFGRNIATLLSFGTSLLLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRY 543

Query: 421 AWGIVLGLICFLTLFPNGGGT 441
           AWG VL LICFLTLFPNGGGT
Sbjct: 544 AWGFVLALICFLTLFPNGGGT 564

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736406|emb|CBI25129.3| unnamed protein product [Vitis vinifera]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/441 (89%), Positives = 422/441 (95%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTDNPIMRLFNRLVRDSLTREKERLEKAEESFK 60
           MGNPSIEAAIKLEKKRAD KLKELDRES+DNP++ LFNR+VRDSL REKERLEKAEE+FK
Sbjct: 1   MGNPSIEAAIKLEKKRADRKLKELDRESSDNPVVGLFNRVVRDSLAREKERLEKAEEAFK 60

Query: 61  ALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVVW 120
           ALDLNKL+ CFGFDTF+ATDVRRFGDGGIFIGNLR+PIEEVIPKLEKKLSEAAGR+VV+W
Sbjct: 61  ALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLW 120

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLK 180
           FMEEK NDITKQ C VQPKAE+DLQFE TKLSTPWGY+S+IVLCVATFGTIA+MSG FLK
Sbjct: 121 FMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLK 180

Query: 181 PDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN 240
           P+ATFDDYLA+VVPLF G +TILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMNN
Sbjct: 181 PNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNN 240

Query: 241 YESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLL 300
           YESLLPNKKALFDIPVARTASAY+TSL LAVAAF+ADGSFNGGDNAL+IRPQFFYNNPLL
Sbjct: 241 YESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYIRPQFFYNNPLL 300

Query: 301 SFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360
           SFIQ+VIGPYTDDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ
Sbjct: 301 SFIQFVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQ 360

Query: 361 AMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNRY 420
           A+FGRN A LLSF TSLLLGIGGLSGSVLCLAWGLFATFFRGGEE+PA DEITPLGD+RY
Sbjct: 361 ALFGRNIATLLSFGTSLLLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRY 420

Query: 421 AWGIVLGLICFLTLFPNGGGT 441
           AWG VL LICFLTLFPNGGGT
Sbjct: 421 AWGFVLALICFLTLFPNGGGT 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468175|ref|XP_003604372.1| Peptidase M50 family [Medicago truncatula] gi|355505427|gb|AES86569.1| Peptidase M50 family [Medicago truncatula]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/455 (86%), Positives = 424/455 (93%), Gaps = 1/455 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDREST-DNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEKKR D KLKELD ES+ +NPI+ +FN LVR +L  EKERLEK EE+F
Sbjct: 109 MGNPSIEAAIKLEKKRTDRKLKELDTESSKNNPIVGVFNNLVRRNLILEKERLEKVEETF 168

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFF TDVRRFGDGGIFIGNLR+PI+EVIPKLEKKLS+AAGR+VV+
Sbjct: 169 KALDLNKLKSCFGFDTFFTTDVRRFGDGGIFIGNLRRPIDEVIPKLEKKLSDAAGREVVL 228

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE+ + ITKQ C VQPKAE+DLQFE T LS P+GY+SAI L V TFGT+A+MSG FL
Sbjct: 229 WFMEEQKDGITKQVCMVQPKAEMDLQFESTNLSNPFGYLSAIALAVTTFGTVALMSGFFL 288

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDYLANVVPLFGG ++ILGVSEI+TR+TAARYGVKLSPSFLVPSNWTGCLGVMN
Sbjct: 289 KPDATFDDYLANVVPLFGGFLSILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMN 348

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPL 299
           NYESLLPNKKALFDIPVARTASAYLTSL LAVAAFVADGSFNGGDNAL+IRPQFFYNNPL
Sbjct: 349 NYESLLPNKKALFDIPVARTASAYLTSLVLAVAAFVADGSFNGGDNALYIRPQFFYNNPL 408

Query: 300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
           LSFIQYVIGPYTDDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIA
Sbjct: 409 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 468

Query: 360 QAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNR 419
           QAMFGR+TA LLSF TSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLG++R
Sbjct: 469 QAMFGRSTATLLSFGTSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGESR 528

Query: 420 YAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           YAWGIVLGLICFLTLFPN GGTF++SF  DP+FRG
Sbjct: 529 YAWGIVLGLICFLTLFPNIGGTFSNSFLSDPYFRG 563

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495811|ref|XP_003516765.1| PREDICTED: uncharacterized protein LOC100818502 [Glycine max]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/455 (86%), Positives = 427/455 (93%), Gaps = 5/455 (1%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRESTD-NPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEKKRAD KLK+LDRE+T+ NP+  LFN LVRD+L  EKERL+KAE++F
Sbjct: 81  MGNPSIEAAIKLEKKRADRKLKQLDRETTNTNPLFALFNNLVRDNLLNEKERLQKAEQTF 140

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           +ALDLN+L+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI++VIPKLEKKLSEAAGR+VVV
Sbjct: 141 QALDLNQLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDDVIPKLEKKLSEAAGREVVV 200

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEEK NDITKQAC VQPKAE+DLQFE TKLSTP GY SAI L V TFGT+A+MSG FL
Sbjct: 201 WFMEEKANDITKQACVVQPKAEMDLQFESTKLSTPLGYFSAIALAVTTFGTVALMSGFFL 260

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KP+ATFDDYLA+ VPLFGG + ILGVSEI+TR+TAA YGVKLSPSFLVPSNWTGCLGVMN
Sbjct: 261 KPNATFDDYLADAVPLFGGFLFILGVSEITTRVTAAHYGVKLSPSFLVPSNWTGCLGVMN 320

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPL 299
           NYESLLPNKKALFDIPVARTASAYLTSL LAVAAFVADGSFNGGDNAL++RPQFFYNNPL
Sbjct: 321 NYESLLPNKKALFDIPVARTASAYLTSLLLAVAAFVADGSFNGGDNALYVRPQFFYNNPL 380

Query: 300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
           LSFIQYVIGPYTDDLGNVLPYAVEGVGVP DPLAFAGLLGMVVTSLN+LPCGRLEGGRIA
Sbjct: 381 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNMLPCGRLEGGRIA 440

Query: 360 QAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNR 419
           QAMFGR+TA LLSFATSLLLG+GGLSGSVLCLAWGLFATFFRGGEEIPAKDEI+P+G++R
Sbjct: 441 QAMFGRSTAMLLSFATSLLLGVGGLSGSVLCLAWGLFATFFRGGEEIPAKDEISPIGESR 500

Query: 420 YAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           YAWGIVLGLICFLTLFPNGGGTF+S+    PFFRG
Sbjct: 501 YAWGIVLGLICFLTLFPNGGGTFSSA----PFFRG 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220875|ref|NP_173229.1| ethylene-dependent gravitropism-deficient and yellow-green-like 3 protein [Arabidopsis thaliana] gi|9665065|gb|AAF97267.1|AC034106_10 F2H15.10 [Arabidopsis thaliana] gi|332191525|gb|AEE29646.1| ethylene-dependent gravitropism-deficient and yellow-green-like 3 protein [Arabidopsis thaliana]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/455 (85%), Positives = 426/455 (93%), Gaps = 1/455 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct: 116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct: 176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct: 236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct: 296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPL 299
           NYESLLPNKKALFDIPVARTASAYLTSL LA AAF++DGSFNGGDNAL+IRPQFF NNPL
Sbjct: 356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQFFDNNPL 415

Query: 300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
           LSF+Q+V+GPY DDLGNVLP AVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIA
Sbjct: 416 LSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 475

Query: 360 QAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNR 419
           QAMFGR+TA +LSF TSLLLGIGGLSGSVLCLAWGLFATFFRGGEE PAKDEITP+GD+R
Sbjct: 476 QAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEITPVGDDR 535

Query: 420 YAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           +AWGIVLGLICFLTLFPN GGTF++SFF  PFFRG
Sbjct: 536 FAWGIVLGLICFLTLFPNSGGTFSTSFFNGPFFRG 570

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740640|dbj|BAE98423.1| hypothetical protein [Arabidopsis thaliana]

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/455 (85%), Positives = 426/455 (93%), Gaps = 1/455 (0%)

Query: 1   MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
           MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct: 116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query: 60  KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
           KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct: 176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query: 120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
           WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct: 236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query: 180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
           KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct: 296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query: 240 NYESLLPNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPL 299
           NYESLLPNKKALFDIPVARTASAYLTSL LA AAF++DGSFNGGDNAL++RPQFF NNPL
Sbjct: 356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYMRPQFFDNNPL 415

Query: 300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
           LSF+Q+V+GPY DDLGNVLP AVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIA
Sbjct: 416 LSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 475

Query: 360 QAMFGRNTANLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDNR 419
           QAMFGR+TA +LSF TSLLLGIGGLSGSVLCLAWGLFATFFRGGEE PAKDEITP+GD+R
Sbjct: 476 QAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEITPVGDDR 535

Query: 420 YAWGIVLGLICFLTLFPNGGGTFNSSFFGDPFFRG 454
           +AWGIVLGLICFLTLFPN GGTF++SFF  PFFRG
Sbjct: 536 FAWGIVLGLICFLTLFPNSGGTFSTSFFNGPFFRG 570

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	1.0	0.792	0.769	3.3e-189
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.806	0.667	0.264	3e-21
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.755	0.616	0.254	8.9e-18

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
 Identities = 350/455 (76%), Positives = 383/455 (84%)

Query:     1 MGNPSIEAAIKLEKKRADTKLKELDRES-TDNPIMRLFNRLVRDSLTREKERLEKAEESF 59
             MGNPSIEAAIKLEK R D KLKEL++ES ++NPI+ ++N L RDSLT+EKERLEKAEE+F
Sbjct:   116 MGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTKEKERLEKAEETF 175

Query:    60 KALDLNKLRGCFGFDTFFATDVRRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGRDVVV 119
             KALDLNKL+ CFGFDTFFATDVRRFGDGGIFIGNLRKPI+EV PKLE KLSEAAGRDVVV
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   120 WFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFL 179
             WFMEE++N+ITKQ C VQPKAEIDLQFE T+LSTPWGYVSAI LCV TFGTIA+MSG FL
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   180 KPDATFDDYLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMN 239
             KPDATFDDY+ANVVPLFGG ++ILGVSEI+TR+TAAR+GVKLSPSFLVPSNWTGCLGVMN
Sbjct:   296 KPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMN 355

Query:   240 NYESLLPNKKALFDIPVXXXXXXXXXXXXXXXXXFVADGSFNGGDNALFIRPQFFYNNPL 299
             NYESLLPNKKALFDIPV                 F++DGSFNGGDNAL+IRPQFF NNPL
Sbjct:   356 NYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQFFDNNPL 415

Query:   300 LSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 359
             LSF+Q+V+GPY DDLGNVLP AVEGVGVP DPLAFAGLLGMVVTSLNLLPCGRLEGGRIA
Sbjct:   416 LSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIA 475

Query:   360 QAMFGRNTANLLSFATXXXXXXXXXXXXXXXXAWGLFATFFRGGEEIPAKDEITPLGDNR 419
             QAMFGR+TA +LSF T                AWGLFATFFRGGEE PAKDEITP+GD+R
Sbjct:   476 QAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEITPVGDDR 535

Query:   420 YAWGIVLGLICFLTLXXXXXXXXXXXXXXDPFFRG 454
             +AWGIVLGLICFLTL               PFFRG
Sbjct:   536 FAWGIVLGLICFLTLFPNSGGTFSTSFFNGPFFRG 570

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 108/409 (26%), Positives = 174/409 (42%)

Query:    53 EKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGG---IFIGNLRKPIEEVIPKLEKKL 109
             EK + +   L  +KL   FG+ TF+ T    FGD G   +F+GNLR   E+V  KL++KL
Sbjct:   137 EKVDPADVKLIKDKL---FGYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKL 193

Query:   110 SEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKL--STPWGYVSAIVLCVAT 167
              E A     ++ +EE  ++        +    + L+ E+++   +T W YV A++L + T
Sbjct:   194 VEVASDKYNLFMIEEPNSEGPDPRGGARVSFGL-LRKEVSEPGPTTLWQYVIALILFLLT 252

Query:   168 FGT---IAIMSGLF-LKPDAT--FDD--------------YLANVVPLFGGLITILGVSE 207
              G+   + I S +  L P+    F D              ++   +PL  G++ IL   E
Sbjct:   253 IGSSVELGIASQINRLPPEVVKYFTDPNAVEPPDMELLYPFVDAALPLAYGVLGILLFHE 312

Query:   208 ISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVXXXXXXXXXXX 267
             +   L A    VKLS  + +P+   G  G +  ++S+LP++    DI +           
Sbjct:   313 LGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSV 372

Query:   268 XXXXXXFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGV 327
                          +  ++ + +    F  + LL  I      Y          A+    V
Sbjct:   373 SMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLLGLISRATLGYA---------ALHAATV 423

Query:   328 PCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATXXXXXXXXXXXX 387
                PL  AG  G+  T+ N+LP G L+GGR  Q  FG+N   L++F              
Sbjct:   424 SIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNA--LVTFGLSTYVMLGLRVLG 481

Query:   388 X-XXXAWGLFATFFRGGEEIPAKDEITPLGDNRYAW-GIVLGLICFLTL 434
                   WGL+    +   E P  +++T +G  R A  GI L L+  LTL
Sbjct:   482 GPLALPWGLYVLICQRTPEKPCLNDVTEVGTWRKALVGIALILVV-LTL 529

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 95/374 (25%), Positives = 158/374 (42%)

Query:    67 LRG-CFGFDTFFATDVRRFGDGGIFIGNLR-KPIEEVIPKLEKKLSEAAGRDVVVWFMEE 124
             LRG  FGFDTFF T    +  G +F GNLR KP      K++ ++    G    ++ +  
Sbjct:   187 LRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSY-EKIKTRMENNFGDQYKLFLLTN 245

Query:   125 KTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIMSGLFLKPD-- 182
               +D  K    V P+  ++ +   T     W    +  L VA F T+ + +   L+ D  
Sbjct:   246 PEDD--KPVAVVVPRRSLEPE---TTAVPEWFAAGSFGL-VALF-TLFLRNVPALQSDLL 298

Query:   183 ATFD--DYLANVVPLFGGLIT--ILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVM 238
             + FD  + L + +P  G L+T  +LGV E+   L A   G+KL   F VPS   G  G +
Sbjct:   299 SAFDNLELLKDGLP--GALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAI 356

Query:   239 NNYESLLPNKKALFDIPVXXXXXXXXXXXXXXXXXFVADGSFNGGDNALFIRPQFFYNNP 298
                ++++  ++ L  +                        S   G   + +    F+ + 
Sbjct:   357 TRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIG---VVVDASVFHESF 413

Query:   299 LLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRI 358
             L   I  ++      LG+ L    EG  +  +PL      G+++  +N +P G L+GG+I
Sbjct:   414 LAGGIAKLL------LGDALK---EGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKI 464

Query:   359 AQAMFGRNTANLLSFATXXXXXXXXXXXXXXXXAWGLFATFFRGGEEIPAKDEITPLGDN 418
             A +++GR TA  L+ A+                 W +   F + G   P  +EIT   D 
Sbjct:   465 AFSIWGRKTATRLTGASIALLGLSALFSDVAFY-WVVLIFFLQRGPIAPLAEEITVPDDK 523

Query:   419 RYAWGIVLGLICFL 432
               + GI++  +  L
Sbjct:   524 YVSLGILVLFLSLL 537

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038621001 SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_95, whole genome shotgun sequence); (579 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	8e-13
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	2e-07
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	3e-04

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 332 LAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGS-VLC 390
           LA AG +G++VT+LNLLP G+L+GG I +A+FGR  A L+     + LG+  L  S  + 
Sbjct: 115 LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIW 174

Query: 391 LAWGLFATF 399
           L W L    
Sbjct: 175 LLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 161 IVLCVATFGT----IAIMSGLFLKPDATFDDYLANVVPLFGGLITILGVSEISTRLTAAR 216
           ++L V T  T     A +SG  +  +          +P    L+ ILG+ E+   L A R
Sbjct: 1   LLLLVLTLLTTLLVGAWLSGNDVPGNPLLLLQ---GLPFALALLAILGIHEMGHYLAARR 57

Query: 217 YGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVA 257
           +GVK S  + +P  + G  G      S +PN+KALFDI +A
Sbjct: 58  HGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALA 98

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 28/72 (38%)

Query: 331 PLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGSVLC 390
            L F  LL + +  LNLLP   L+GG +   +        LS      L   GL+  +L 
Sbjct: 302 LLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALRGKPLSERVEAALYRIGLALLLLL 361

Query: 391 LAWGLFATFFRG 402
           +    F    R 
Sbjct: 362 MLLATFNDLLRL 373

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.97
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.9
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.86
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.8
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.75
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.71
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.71
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.63
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.6
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.14
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.9
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.44
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.42
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.98
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.87
PF13398	200	Peptidase_M50B: Peptidase M50B-like	96.67
COG0750	375	Predicted membrane-associated Zn-dependent proteas	94.95
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	92.41

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.97  E-value=1.1e-30  Score=245.52  Aligned_cols=152  Identities=39%  Similarity=0.661  Sum_probs=134.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHHHH
Q 012885          188 YLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSL  267 (454)
Q Consensus       188 ~~~~~lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~al  267 (454)
                      .+..+++++++++.++.+||+||+++||++|+|++.++++|.+.+|++|+++++++..++|++.++|++|||++|+++++
T Consensus        29 ~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~~~~~~~~~~~~~~~~IalAGPl~nl~lal  108 (183)
T cd06160          29 LLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLAL  108 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEEEEecCCCCChhHhehhhhhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999888999999999999999999999999999999998887


Q ss_pred             HHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhh
Q 012885          268 ALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNL  347 (454)
Q Consensus       268 ~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNL  347 (454)
                      ++.+++                                                          +..++|+|+++++|||
T Consensus       109 i~~~~~----------------------------------------------------------~~~~~~~nl~l~~fNL  130 (183)
T cd06160         109 PVLIIG----------------------------------------------------------LAVAGWVGLLVTALNL  130 (183)
T ss_pred             HHHHHH----------------------------------------------------------HHHHHHHHHHHHHHHh
Confidence            654432                                                          1246889999999999


Q ss_pred             cCCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHH
Q 012885          348 LPCGRLEGGRIAQAMFGRNTANLLSFATSLLLGIGGLSGS-VLCLAWGLFA  397 (454)
Q Consensus       348 LPvgqLDGGrI~~Al~G~r~~~~~~~~~~~lL~l~~~~~~-~l~l~w~lli  397 (454)
                      +|++|||||||+|+++++|.+...++++.+++++.++..+ ..|+.|..++
T Consensus       131 LPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  181 (183)
T cd06160         131 LPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLL  181 (183)
T ss_pred             CCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999999999999999999999998888877543 2577776554

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.90  E-value=1.3e-22  Score=196.70  Aligned_cols=130  Identities=22%  Similarity=0.278  Sum_probs=105.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHHHH
Q 012885          188 YLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSL  267 (454)
Q Consensus       188 ~~~~~lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~al  267 (454)
                      .+..|+.++++++.++++||+||+++||++|+|+....+.      .||+++++++..+++++.+.|++|||++|+++++
T Consensus        41 ~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~~i~l~------p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~  114 (227)
T cd06164          41 AWLLGLAAALLLFASVLLHELGHSLVARRYGIPVRSITLF------LFGGVARLEREPETPGQEFVIAIAGPLVSLVLAL  114 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeECeEEEE------eeeEEEEecCCCCCHHHHhhhhhhHHHHHHHHHH
Confidence            4667899999999999999999999999999999765544      5799999999988999999999999999999998


Q ss_pred             HHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhh
Q 012885          268 ALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNL  347 (454)
Q Consensus       268 ~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNL  347 (454)
                      ++.+........    .            ++.                            ...-+.+.+|+|+++++|||
T Consensus       115 i~~~l~~~~~~~----~------------~~~----------------------------~~~~~~~~~~~Nl~l~~fNL  150 (227)
T cd06164         115 LFLLLSLALPGS----G------------AGP----------------------------LGVLLGYLALINLLLAVFNL  150 (227)
T ss_pred             HHHHHHHHhccc----c------------chH----------------------------HHHHHHHHHHHHHHHHHHhC
Confidence            766554322100    0            000                            01124567899999999999


Q ss_pred             cCCCCCChHHHHHHHhchhh
Q 012885          348 LPCGRLEGGRIAQAMFGRNT  367 (454)
Q Consensus       348 LPvgqLDGGrI~~Al~G~r~  367 (454)
                      +|+.|||||||+++++.++.
T Consensus       151 lP~~PLDGgril~~ll~~~~  170 (227)
T cd06164         151 LPAFPLDGGRVLRALLWRRT  170 (227)
T ss_pred             cCCCCCChHHHHHHHHHHhc
Confidence            99999999999999998877

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.86  E-value=6.1e-21  Score=182.32  Aligned_cols=128  Identities=22%  Similarity=0.229  Sum_probs=103.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHHHH
Q 012885          188 YLANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSL  267 (454)
Q Consensus       188 ~~~~~lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~al  267 (454)
                      .+..++.+++.++.++++||+||+++||++|+++....      +..+|+.+++++...+|++.+.|++|||++|+++++
T Consensus        26 ~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~~i~------l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la~   99 (208)
T cd06161          26 AWLLGLLEALLLFLSVLLHELGHALVARRYGIRVRSIT------LLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLAG   99 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccceE------EEeeeeeeeeccCCCChhHheeeeeehHHHHHHHHH
Confidence            35577889999999999999999999999999987554      445899999988877899999999999999999887


Q ss_pred             HHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhh
Q 012885          268 ALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNL  347 (454)
Q Consensus       268 ~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNL  347 (454)
                      ++.+.......                  .+                            .....+...+|+|+.++++||
T Consensus       100 ~~~~l~~~~~~------------------~~----------------------------~~~~~~~~~~~~N~~l~lfNL  133 (208)
T cd06161         100 LFYLLYLLLPG------------------GG----------------------------PLSSLLEFLAQVNLILGLFNL  133 (208)
T ss_pred             HHHHHHHHccc------------------ch----------------------------HHHHHHHHHHHHHHHHHHHHc
Confidence            76544322110                  00                            011235567899999999999


Q ss_pred             cCCCCCChHHHHHHHhchhh
Q 012885          348 LPCGRLEGGRIAQAMFGRNT  367 (454)
Q Consensus       348 LPvgqLDGGrI~~Al~G~r~  367 (454)
                      +|+.|||||||+++++.++.
T Consensus       134 lPi~pLDGg~il~~ll~~~~  153 (208)
T cd06161         134 LPALPLDGGRVLRALLWRRT  153 (208)
T ss_pred             cCCCCCChHHHHHHHHHHhc
Confidence            99999999999999998776

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.80  E-value=3.3e-19  Score=165.23  Aligned_cols=135  Identities=24%  Similarity=0.334  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeec-----------------cccccccccccccceeEecCCCCCC-----cccc
Q 012885          194 PLFGGLITILGVSEISTRLTAARYGVKLS-----------------PSFLVPSNWTGCLGVMNNYESLLPN-----KKAL  251 (454)
Q Consensus       194 p~al~ll~iL~vHElGH~laAr~~gv~~s-----------------lP~fIP~~~lGtfGAvi~~ks~~p~-----RkaL  251 (454)
                      .+.++++.++.+||+||+++||++|+++.                 ...++|      +|++.++.+..++     |++.
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip------~gG~~~~~~~~~~~~~~~~~~~   75 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIP------LGGYAKPVGENPRAFKKPRWQR   75 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHh------ccCeeccCCCChhhhccchhhh
Confidence            46678889999999999999999999662                 233343      4889988887654     8888


Q ss_pred             eeeEEechHHhHHHHHHHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccH
Q 012885          252 FDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDP  331 (454)
Q Consensus       252 fdIaiAGPlaG~v~al~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hP  331 (454)
                      +.|++|||++|+++++++........... ....           +..                        ......+.
T Consensus        76 ~~i~laGPl~nllla~i~~~~~~~~~~~~-~~~~-----------~~~------------------------~~~~~~~~  119 (180)
T cd05709          76 LLVALAGPLANLLLALLLLLLLLLLGGLP-PAPV-----------GQA------------------------ASSGLANL  119 (180)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHccCC-ccch-----------hhh------------------------HHHHHHHH
Confidence            89999999999999988765544322100 0000           000                        00112245


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCChHHHHHHHhchhhHHH
Q 012885          332 LAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANL  370 (454)
Q Consensus       332 la~agw~GL~vtalNLLPvgqLDGGrI~~Al~G~r~~~~  370 (454)
                      +.+++|+|+.++++||+|+.||||||++++++.++..+.
T Consensus       120 l~~~~~~n~~l~~fNLlPi~plDGg~il~~~l~~~~~~~  158 (180)
T cd05709         120 LAFLALINLNLAVFNLLPIPPLDGGRILRALLEAIRGRV  158 (180)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhHHHHHH
Confidence            778899999999999999999999999999999887653

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.75  E-value=1.2e-17  Score=157.39  Aligned_cols=113  Identities=25%  Similarity=0.237  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeecc--ccccccc------------cccccceeEecCCCCC-------------
Q 012885          194 PLFGGLITILGVSEISTRLTAARYGVKLSP--SFLVPSN------------WTGCLGVMNNYESLLP-------------  246 (454)
Q Consensus       194 p~al~ll~iL~vHElGH~laAr~~gv~~sl--P~fIP~~------------~lGtfGAvi~~ks~~p-------------  246 (454)
                      -+.+++..++.+||+||+++||++|+|+..  .=|=|..            -+-++|++.++++..+             
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            366778889999999999999999999863  1111110            1235899998875422             


Q ss_pred             ---CcccceeeEEechHHhHHHHHHHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCcccccc
Q 012885          247 ---NKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVE  323 (454)
Q Consensus       247 ---~RkaLfdIaiAGPlaG~v~al~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~  323 (454)
                         +|++.+-|++|||++|+++++++.+.-                                                  
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~~--------------------------------------------------  112 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAVL--------------------------------------------------  112 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence               355667799999999998887553221                                                  


Q ss_pred             CCCcCccHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHhc
Q 012885          324 GVGVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFG  364 (454)
Q Consensus       324 ~~~v~~hPla~agw~GL~vtalNLLPvgqLDGGrI~~Al~G  364 (454)
                              +.+..++|+.+..|||+|+.||||||++++++.
T Consensus       113 --------~~~~~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         113 --------LSFLALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             --------HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence                    123457899999999999999999999999995

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.71  E-value=1.4e-16  Score=157.97  Aligned_cols=121  Identities=17%  Similarity=0.170  Sum_probs=93.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCC---CCcccceeeEEechHHhHHHHH
Q 012885          191 NVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLL---PNKKALFDIPVARTASAYLTSL  267 (454)
Q Consensus       191 ~~lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~---p~RkaLfdIaiAGPlaG~v~al  267 (454)
                      ..+.+.++++.++.+||+||+++||++|+++...-+.  ..+-.+||+++..+..   .+|++.+.|+.|||++|+++++
T Consensus       109 ~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl~--l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvla~  186 (263)
T cd06159         109 PLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGLL--LLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVAL  186 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhHH--HHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHHHH
Confidence            5667778899999999999999999999998753221  0112478998887654   4577888999999999998886


Q ss_pred             HHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhh
Q 012885          268 ALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNL  347 (454)
Q Consensus       268 ~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNL  347 (454)
                      ++.+...                                                         +....|+|+.+.+|||
T Consensus       187 i~~~l~~---------------------------------------------------------l~~~~~~N~~l~lFNL  209 (263)
T cd06159         187 IAFALFF---------------------------------------------------------LYWIFWINFLLGLFNC  209 (263)
T ss_pred             HHHHHHH---------------------------------------------------------HHHHHHHHHHHHHHhC
Confidence            5543210                                                         1234689999999999


Q ss_pred             cCCCCCChHHHHHHHhchhhHHH
Q 012885          348 LPCGRLEGGRIAQAMFGRNTANL  370 (454)
Q Consensus       348 LPvgqLDGGrI~~Al~G~r~~~~  370 (454)
                      +|+.||||||++++++..+.++.
T Consensus       210 lP~~PLDGg~il~~ll~~~~~~~  232 (263)
T cd06159         210 LPAIPLDGGHVFRDLLEALLRRF  232 (263)
T ss_pred             CCCCCCChHHHHHHHHHHHhCCC
Confidence            99999999999999987665543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.71  E-value=2.2e-17  Score=153.97  Aligned_cols=128  Identities=21%  Similarity=0.227  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeecccccc--cccc---------------cc----c--------cceeEecCCCC
Q 012885          195 LFGGLITILGVSEISTRLTAARYGVKLSPSFLV--PSNW---------------TG----C--------LGVMNNYESLL  245 (454)
Q Consensus       195 ~al~ll~iL~vHElGH~laAr~~gv~~slP~fI--P~~~---------------lG----t--------fGAvi~~ks~~  245 (454)
                      +.++++.++.+||+||.++||++|+|+.....-  |.+.               +|    .        .++..+.+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            467888999999999999999999999655211  1100               11    1        23344444445


Q ss_pred             CCcccceeeEEechHHhHHHHHHHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCC
Q 012885          246 PNKKALFDIPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGV  325 (454)
Q Consensus       246 p~RkaLfdIaiAGPlaG~v~al~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~  325 (454)
                      .+|++.+.+++|||+++++++++...........                                          ....
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~------------------------------------------~~~~  119 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGS------------------------------------------VGWS  119 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------------------E
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcc------------------------------------------cccc
Confidence            6677788999999999999997665442211100                                          0001


Q ss_pred             CcCccHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHhc
Q 012885          326 GVPCDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFG  364 (454)
Q Consensus       326 ~v~~hPla~agw~GL~vtalNLLPvgqLDGGrI~~Al~G  364 (454)
                      ....+.+.+++|+|+.++++||+|+.||||||++++++.
T Consensus       120 ~~~~~~~~~~~~~n~~l~~~NllPi~~lDG~~il~~l~~  158 (192)
T PF02163_consen  120 SFFAEFLFFFAWLNFILALFNLLPIPPLDGGRILRALLE  158 (192)
T ss_dssp             ETTEEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCcCCHHHHHHHHHH
Confidence            223467889999999999999999999999999999983

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.63  E-value=2.3e-15  Score=150.01  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCC---CCCcccceeeEEechHHhHHHHHHH
Q 012885          193 VPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESL---LPNKKALFDIPVARTASAYLTSLAL  269 (454)
Q Consensus       193 lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~---~p~RkaLfdIaiAGPlaG~v~al~l  269 (454)
                      .-+.++++.++.+||+||.++||++|+++..--+.+...+.  ||+.+..+.   ..++++.+-|+.|||+++++++++.
T Consensus       128 ~~~l~al~isvvvHElgHal~A~~~gi~V~~iGl~l~~~~p--Ga~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~i~  205 (277)
T cd06162         128 GYYFTALLISGVVHEMGHGVAAVREQVRVNGFGIFFFIIYP--GAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGLVG  205 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeeceEEEeeeeccC--eeEEeecccccccCChhhhhheehhhHHHHHHHHHHH
Confidence            33456788999999999999999999999754333221122  889887432   2345556689999999999988765


Q ss_pred             HHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhhcC
Q 012885          270 AVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLP  349 (454)
Q Consensus       270 ~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNLLP  349 (454)
                      .+..+  .                    +.                                +....++++.+.++||+|
T Consensus       206 ~~l~~--~--------------------~~--------------------------------l~~la~iNl~lavfNLlP  231 (277)
T cd06162         206 YLLLI--E--------------------TF--------------------------------LKYLISLSGALAVINAVP  231 (277)
T ss_pred             HHHHH--H--------------------HH--------------------------------HHHHHHHHHHHHHhhcCC
Confidence            43211  0                    00                                334567888889999999


Q ss_pred             CCCCChHHHHHHHhchhhHHH
Q 012885          350 CGRLEGGRIAQAMFGRNTANL  370 (454)
Q Consensus       350 vgqLDGGrI~~Al~G~r~~~~  370 (454)
                      +.|||||||+++++.++..+.
T Consensus       232 ~~pLDGg~il~~ll~~~~~~~  252 (277)
T cd06162         232 CFALDGQWILSTFLEATLVSV  252 (277)
T ss_pred             CCCCChHHHHHHHHHHHhCCc
Confidence            999999999999987766553

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.60  E-value=4e-15  Score=139.82  Aligned_cols=136  Identities=21%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeecc----ccccccc---cccc---------cceeEe-----cCCCCCCccccee
Q 012885          195 LFGGLITILGVSEISTRLTAARYGVKLSP----SFLVPSN---WTGC---------LGVMNN-----YESLLPNKKALFD  253 (454)
Q Consensus       195 ~al~ll~iL~vHElGH~laAr~~gv~~sl----P~fIP~~---~lGt---------fGAvi~-----~ks~~p~RkaLfd  253 (454)
                      ..++++.++..||+||.++|+++|.++..    -.+=|.-   .+|+         .++..+     .+....+|++.+.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            44667888999999999999999998741    1111210   0110         122322     1122235678889


Q ss_pred             eEEechHHhHHHHHHHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHH
Q 012885          254 IPVARTASAYLTSLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLA  333 (454)
Q Consensus       254 IaiAGPlaG~v~al~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla  333 (454)
                      |++|||++|++++++..+........    .+ .       .++.+.                             .-+.
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~----~~-~-------~~~~l~-----------------------------~~~~  122 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAF----GG-V-------VASFLF-----------------------------LMLA  122 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccc----cc-h-------hhHHHH-----------------------------HHHH
Confidence            99999999999987655432221100    00 0       001111                             1133


Q ss_pred             HHHHHHHHHHHhhhcCCCCCChHHHHHHHhchhhHHHH
Q 012885          334 FAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRNTANLL  371 (454)
Q Consensus       334 ~agw~GL~vtalNLLPvgqLDGGrI~~Al~G~r~~~~~  371 (454)
                      ...++|+.+..|||+|+.|||||||+++++.++.....
T Consensus       123 ~~~~~Ni~l~lfNLlPipPLDG~~il~~~l~~~~~~~~  160 (181)
T cd06158         123 YGVLINLVLAVFNLLPIPPLDGSKILAALLPRRLAEAY  160 (181)
T ss_pred             HHHHHHHHHHHHHhCCCCCCChHHHHHHHcchhHHHHH
Confidence            45678999999999999999999999999998877543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.14  E-value=1.6e-09  Score=105.35  Aligned_cols=134  Identities=30%  Similarity=0.395  Sum_probs=91.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHH---
Q 012885          189 LANVVPLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLT---  265 (454)
Q Consensus       189 ~~~~lp~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~---  265 (454)
                      +.++....++++.-+..||+||+..+++++++.....+      +.+|++..++..+.+.+..+.+..+||+.+..+   
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~~~~i------~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLLLALL------FGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHHHHHH------HhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            44555566667789999999999999999887654332      237779999999888888888888888765543   


Q ss_pred             -HHHHHHHHHHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHH
Q 012885          266 -SLALAVAAFVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTS  344 (454)
Q Consensus       266 -al~l~~~g~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vta  344 (454)
                       ++.+.+.+.... +       ...     ..+++.                             .-+...+-+|++++.
T Consensus       115 ~ni~la~~~~~~~-~-------~~~-----~~~~~~-----------------------------~~~~~la~~Nl~L~l  152 (230)
T COG1994         115 TNIALAVLGLLAL-S-------LFL-----YHSVLF-----------------------------AFLAALALVNLVLAL  152 (230)
T ss_pred             HHHHHHHHHHHhh-c-------ccc-----cchhHH-----------------------------HHHHHHHHHHHHHHH
Confidence             122222221000 0       000     000110                             112345568999999


Q ss_pred             hhhcCCCCCChHHHHHHHhchhhHHH
Q 012885          345 LNLLPCGRLEGGRIAQAMFGRNTANL  370 (454)
Q Consensus       345 lNLLPvgqLDGGrI~~Al~G~r~~~~  370 (454)
                      |||+|+.||||||++|+...++....
T Consensus       153 FNLiPi~PLDGg~vlr~~~~~~~~~~  178 (230)
T COG1994         153 FNLLPIPPLDGGRVLRALLPRRYGAA  178 (230)
T ss_pred             HhCCCCCCCChHHHHHHHccHHHHHH
Confidence            99999999999999999998887743

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.90  E-value=2e-09  Score=109.93  Aligned_cols=150  Identities=19%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             HHHHHHHH--HHHHHHHHHHcCCeeccccccccccccccceeEe--cCCCCCC-----cccceeeEEechHHhHHHHHHH
Q 012885          199 LITILGVS--EISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNN--YESLLPN-----KKALFDIPVARTASAYLTSLAL  269 (454)
Q Consensus       199 ll~iL~vH--ElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~--~ks~~p~-----RkaLfdIaiAGPlaG~v~al~l  269 (454)
                      .+.+...|  +..|+.+++.++.....|+++| ...|+.++.++  ..+..|+     ++.+++++.+++++. .++-..
T Consensus       181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~-~v~~~~  258 (375)
T COG0750         181 LLTILVIRLDGEAHAVAAEIIKSLGLTPVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGL-AVEKTG  258 (375)
T ss_pred             ceEEEEEeccceeeeccccceeeEeeecceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHH-HHHHHH
Confidence            46778889  9999999999999999999887 56788887775  6677777     999999999999983 333333


Q ss_pred             HHHHHHhcc--CCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhh
Q 012885          270 AVAAFVADG--SFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNL  347 (454)
Q Consensus       270 ~~~g~~~~~--~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNL  347 (454)
                      .+.......  ....++    ...+.. ..|. .. ....+.             ..+....|++.+++|+++.++.+||
T Consensus       259 ~~~~~~~~~l~~~~~~~----~~~~~l-~Gpi-~i-~~~~~~-------------~~~~~~~~~l~~~~~lsi~lg~lNl  318 (375)
T COG0750         259 RLVKLTLKMLKKLITGD----LSLKNL-SGPI-GI-AKIAGA-------------AASLGLINLLFFLALLSINLGILNL  318 (375)
T ss_pred             HHHHHHHHHHHHheecc----cccccc-cCce-eh-hhhhhH-------------HHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            333332220  000000    000000 0111 00 001110             0002346999999999999999999


Q ss_pred             cCCCCCChHHHHHHHhchhhHHH
Q 012885          348 LPCGRLEGGRIAQAMFGRNTANL  370 (454)
Q Consensus       348 LPvgqLDGGrI~~Al~G~r~~~~  370 (454)
                      +|+.||||||++++++.+..++.
T Consensus       319 lP~p~LDGG~i~~~~~e~~~g~~  341 (375)
T COG0750         319 LPIPPLDGGHLLFYLLEALRGKP  341 (375)
T ss_pred             cCCCccCccHHHHHHHHHHhCCC
Confidence            99999999999999998766543

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.44  E-value=3.7e-07  Score=96.84  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCeecc--cccccc---cc----------ccccceeEecCCCCC----------
Q 012885          192 VVPLFGGLITILGVSEISTRLTAARYGVKLSP--SFLVPS---NW----------TGCLGVMNNYESLLP----------  246 (454)
Q Consensus       192 ~lp~al~ll~iL~vHElGH~laAr~~gv~~sl--P~fIP~---~~----------lGtfGAvi~~ks~~p----------  246 (454)
                      -+.|.+++..++++||+|||++||++||++..  --|=|.   +.          .=++|++.+|.+.-+          
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~~   86 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRHH   86 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhhh
Confidence            34466777788899999999999999999963  112121   10          225788888764311          


Q ss_pred             -----CcccceeeEEechHHhHHHHHHHHHHHH
Q 012885          247 -----NKKALFDIPVARTASAYLTSLALAVAAF  274 (454)
Q Consensus       247 -----~RkaLfdIaiAGPlaG~v~al~l~~~g~  274 (454)
                           +..+-+-|.+|||++|+++|++++..-+
T Consensus        87 ~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         87 AFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                 1222245999999999999988765544

>TIGR00054 RIP metalloprotease RseP

Probab=98.42  E-value=4e-07  Score=95.89  Aligned_cols=81  Identities=16%  Similarity=0.036  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeecc--ccccccc------------cccccceeEecCCCC--------------
Q 012885          194 PLFGGLITILGVSEISTRLTAARYGVKLSP--SFLVPSN------------WTGCLGVMNNYESLL--------------  245 (454)
Q Consensus       194 p~al~ll~iL~vHElGH~laAr~~gv~~sl--P~fIP~~------------~lGtfGAvi~~ks~~--------------  245 (454)
                      .+.+.+..++++||+|||++||++|+++..  --|=|.+            -.-++|++.++.+.-              
T Consensus         8 ~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~   87 (420)
T TIGR00054         8 ASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDL   87 (420)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhh
Confidence            345677788999999999999999999852  1111110            133589999984110              


Q ss_pred             ---CCcccceeeEEechHHhHHHHHHHHHHHH
Q 012885          246 ---PNKKALFDIPVARTASAYLTSLALAVAAF  274 (454)
Q Consensus       246 ---p~RkaLfdIaiAGPlaG~v~al~l~~~g~  274 (454)
                         .++.+-+-|.+|||++|++++++++...+
T Consensus        88 f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        88 FNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             hccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence               12233346999999999999988766543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR00054 RIP metalloprotease RseP

Probab=96.98  E-value=0.0013  Score=69.59  Aligned_cols=33  Identities=30%  Similarity=0.564  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 012885          331 PLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMF  363 (454)
Q Consensus       331 Pla~agw~GL~vtalNLLPvgqLDGGrI~~Al~  363 (454)
                      -+.+++-+++-+..+||||+..|||||++.+++
T Consensus       349 ~l~~~a~iSi~Lgi~NLLPiP~LDGG~llf~~i  381 (420)
T TIGR00054       349 LLQFGAFLSINLGIMNLLPIPALDGGQLLFLFI  381 (420)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence            466777888999999999999999999998875

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.87  E-value=0.0017  Score=69.22  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHh
Q 012885          330 DPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMF  363 (454)
Q Consensus       330 hPla~agw~GL~vtalNLLPvgqLDGGrI~~Al~  363 (454)
                      +-+.+.+.+++-+..+||||+..|||||++..++
T Consensus       377 ~~l~~~a~iSi~Lgi~NLlPiP~LDGG~l~f~~~  410 (449)
T PRK10779        377 YYLMFLALISVNLGIINLFPLPVLDGGHLLFLAI  410 (449)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHH
Confidence            4577788899999999999999999999998764

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=96.67  E-value=0.0028  Score=60.73  Aligned_cols=65  Identities=22%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHHHHHHHHHH
Q 012885          202 ILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAA  273 (454)
Q Consensus       202 iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~al~l~~~g  273 (454)
                      ...+||+||.++|.-.|-|++....-|.     -++.+..+.  +++-..+-++.|||++..+.+..+...+
T Consensus        24 ~t~~HE~gHal~a~l~G~~v~~i~l~~~-----~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   24 VTFVHELGHALAALLTGGRVKGIVLFPD-----GSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEEEeC-----CCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            3689999999999999999987665553     566777777  5555566799999999888776655544

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=94.95  E-value=0.074  Score=54.53  Aligned_cols=82  Identities=20%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeeccc--ccccc-c------------cccccceeEecCCCCCC---------c
Q 012885          193 VPLFGGLITILGVSEISTRLTAARYGVKLSPS--FLVPS-N------------WTGCLGVMNNYESLLPN---------K  248 (454)
Q Consensus       193 lp~al~ll~iL~vHElGH~laAr~~gv~~slP--~fIP~-~------------~lGtfGAvi~~ks~~p~---------R  248 (454)
                      +.+.+.+...+.+||+||+|.||++|+++...  -|-|. +            ..-++|+..++......         +
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            44666777888999999999999999999632  11120 0            01234554443332211         0


Q ss_pred             cc---------ceeeEEechHHhHHHHHHHHHHHH
Q 012885          249 KA---------LFDIPVARTASAYLTSLALAVAAF  274 (454)
Q Consensus       249 ka---------LfdIaiAGPlaG~v~al~l~~~g~  274 (454)
                      .+         -+-+-.|||+.+++.+..+.+...
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence            00         134789999999987776655443

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.13  Score=54.48  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHcCCeecc-ccccccccccccceeEecCC----CCCCcccceeeEEechHHhHH
Q 012885          191 NVVPLF-GGLITILGVSEISTRLTAARYGVKLSP-SFLVPSNWTGCLGVMNNYES----LLPNKKALFDIPVARTASAYL  264 (454)
Q Consensus       191 ~~lp~a-l~ll~iL~vHElGH~laAr~~gv~~sl-P~fIP~~~lGtfGAvi~~ks----~~p~RkaLfdIaiAGPlaG~v  264 (454)
                      .+++|. ..++....+||+||.|||.+.||++.. =.||-.+   .=||++.+..    ..|+-++| .|--||-.=+|+
T Consensus       121 ~~I~yf~t~lvi~~vvHElGHalAA~segV~vngfgIfi~ai---yPgafvdl~~dhLqsl~~fr~L-rIfcAGIWHNfv  196 (484)
T KOG2921|consen  121 SGIAYFLTSLVITVVVHELGHALAAASEGVQVNGFGIFIAAI---YPGAFVDLDNDHLQSLPSFRAL-RIFCAGIWHNFV  196 (484)
T ss_pred             ccchhhhhhHHHHHHHHHhhHHHHHHhcCceeeeeEEEEEEE---cCchhhhhhhhHHhhcchHHHH-HHHhhhHHHHHH
Confidence            445554 456677899999999999999999873 2222111   1255554332    13444454 688899999988


Q ss_pred             HHHHHH
Q 012885          265 TSLALA  270 (454)
Q Consensus       265 ~al~l~  270 (454)
                      .+++..
T Consensus       197 fallc~  202 (484)
T KOG2921|consen  197 FALLCV  202 (484)
T ss_pred             HHHHHH
Confidence            887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 57/380 (15%), Positives = 118/380 (31%), Gaps = 98/380 (25%)

Query: 1   MGNPSIEAAI--KLEK--KRADTKLKELDRESTDNPIMRLFNRLVRDSLTR--EKERLEK 54
           + N +    +   L+K   + D        + + N  +R+ +  ++  L R  + +  E 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHS--IQAELRRLLKSKPYEN 245

Query: 55  A---------EESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIF-IGNLRKPIEEVIPK 104
                      +++ A +L     C        T   R     +    +        +  
Sbjct: 246 CLLVLLNVQNAKAWNAFNL----SC---KILLTT---R--FKQVTDFLSAATTTHISLDH 293

Query: 105 LEKKLSEAAGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTK--LST--PWGYVSA 160
               L+    + +++ +++ +  D+ ++     P+  + +  E  +  L+T   W +V+ 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNC 352

Query: 161 IVLCVATFGTIAIMSGL-FLKPD---ATFDDYLA----NV-VPLFGGLITIL--GVSEIS 209
             L      T  I S L  L+P      FD  L+    +  +P    L++++   V +  
Sbjct: 353 DKL------TTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPT--ILLSLIWFDVIKSD 403

Query: 210 TRLTAARYGVKLSPSFLVPSNW-TGCLGVMNNYESL---LPNKKALFDIPVARTASAYLT 265
             +       KL    LV        + + + Y  L   L N+ AL    V      Y  
Sbjct: 404 VMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----YNI 455

Query: 266 SLALAVAAFVA---DGSF------------NGGDNALFIRPQFFYNNPLLSFIQYVI--- 307
                    +    D  F            +     LF     F +     F++  I   
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLD---FRFLEQKIRHD 510

Query: 308 -------GPYTDDLGNVLPY 320
                  G   + L  +  Y
Sbjct: 511 STAWNASGSILNTLQQLKFY 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.88

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=5.2e-23  Score=197.53  Aligned_cols=155  Identities=23%  Similarity=0.381  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeccccccccccccccceeEecCCCCCCcccceeeEEechHHhHHHHHHHHHHH
Q 012885          194 PLFGGLITILGVSEISTRLTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLALAVAA  273 (454)
Q Consensus       194 p~al~ll~iL~vHElGH~laAr~~gv~~slP~fIP~~~lGtfGAvi~~ks~~p~RkaLfdIaiAGPlaG~v~al~l~~~g  273 (454)
                      .++++++.++.+||+||+++||++|+++..+.++|      ||+++++++.+  |++.++|++|||++|+++++++....
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i~l~p------~Gg~~~~~~~~--~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGVAMMDKIP--KEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECS------SSCBCCCCCCC--SSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccEEEEE------eeeEEEcccCC--ccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999877665      68888887643  47788999999999999887654331


Q ss_pred             HHhccCCCCCCCccccccccccCCchhHHHHHhhCCccCCCCCCccccccCCCcCccHHHHHHHHHHHHHHhhhcCCCCC
Q 012885          274 FVADGSFNGGDNALFIRPQFFYNNPLLSFIQYVIGPYTDDLGNVLPYAVEGVGVPCDPLAFAGLLGMVVTSLNLLPCGRL  353 (454)
Q Consensus       274 ~~~~~~~~~~~~~l~~~p~~~~~~pL~~~~~~~lg~~~~~lG~~lp~~~~~~~v~~hPla~agw~GL~vtalNLLPvgqL  353 (454)
                      ..    .+.                                +      .   .. ..-+...+|+|+++++|||+|++||
T Consensus       114 ~~----~~~--------------------------------~------~---~~-~~~~~~~~~iNl~l~~fNLlPi~PL  147 (224)
T 3b4r_A          114 QF----FDI--------------------------------N------I---NG-YPLLYTLSLLNLMLGGFNLIPAFPM  147 (224)
T ss_dssp             TT----CCC--------------------------------E------E---TT-EEHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred             HH----ccC--------------------------------c------c---hH-HHHHHHHHHHHHHHHHHHccCCCCC
Confidence            10    000                                0      0   00 1224567999999999999999999


Q ss_pred             ChHHHHHHHhchhhHHH--------HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhC
Q 012885          354 EGGRIAQAMFGRNTANL--------LSFATSLLLGIGGLS-GSVLCLAWGLFATFFRG  402 (454)
Q Consensus       354 DGGrI~~Al~G~r~~~~--------~~~~~~~lL~l~~~~-~~~l~l~w~lli~~~~~  402 (454)
                      |||||++++++++..+.        ++.++.+++.+.++. .+.+.++|++++++-++
T Consensus       148 DGgril~~ll~~~~~~~~a~~~~~~~g~~i~~~l~~~g~~~~~~~l~~i~~fl~~~a~  205 (224)
T 3b4r_A          148 DGGRILRAILSKKYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAE  205 (224)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence            99999999998866432        455554444443332 34456777877765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00