Citrus Sinensis ID: 012909

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGAS
ccccccccccEEEEEEEcccccccHHHHHHHcccccccEEEEcccEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEECccccccccccHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHHHHHcccccccCEEEEEcccccEEEEEccccccEECcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEccccccccEEEEEEEcccccccccHHHHccccHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccEEEEEECcccccccccccccc
****HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYA****************
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MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGAS

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Hydroxymethylglutaryl-CoA synthase This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation.confidentP54873
Hydroxymethylglutaryl-CoA synthase This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.probableP54839
Hydroxymethylglutaryl-CoA synthase A Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.probableP54872

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.3.-.-Acyltransferases.probable
2.3.3.-Acyl groups converted into alkyl on transfer.probable
2.3.3.10Hydroxymethylglutaryl-CoA synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2F82, chain A
Confidence level:very confident
Coverage over the Query: 6-439
View the alignment between query and template
View the model in PyMOL