Citrus Sinensis ID: 012909
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | 2.2.26 [Sep-21-2011] | |||||||
| P54873 | 461 | Hydroxymethylglutaryl-CoA | yes | no | 0.973 | 0.956 | 0.765 | 0.0 | |
| P54872 | 482 | Hydroxymethylglutaryl-CoA | yes | no | 0.949 | 0.892 | 0.486 | 1e-124 | |
| P22791 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.962 | 0.858 | 0.492 | 1e-120 | |
| P54868 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.962 | 0.858 | 0.490 | 1e-120 | |
| P54869 | 508 | Hydroxymethylglutaryl-CoA | yes | no | 0.960 | 0.856 | 0.493 | 1e-120 | |
| P54961 | 453 | Hydroxymethylglutaryl-CoA | N/A | no | 0.938 | 0.938 | 0.491 | 1e-120 | |
| O02734 | 508 | Hydroxymethylglutaryl-CoA | no | no | 0.958 | 0.854 | 0.490 | 1e-119 | |
| Q5R7Z9 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.984 | 0.857 | 0.480 | 1e-119 | |
| Q01581 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.984 | 0.857 | 0.480 | 1e-119 | |
| Q8JZK9 | 520 | Hydroxymethylglutaryl-CoA | no | no | 0.971 | 0.846 | 0.485 | 1e-118 |
| >sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/457 (76%), Positives = 388/457 (84%), Gaps = 16/457 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 63 SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES SWDGRYGLV+CTD+A A+AMLIGPDAPI FESKLR
Sbjct: 123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct: 183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
Y VFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+L+ ESYQSRDLEK S
Sbjct: 243 YIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQ+AK YD KVQP+TLIPK+VGNMYTASLYAAFASL+H+KH+ L GKRV+MFSYGSG T
Sbjct: 303 QQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGST 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L + PFS+SNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAKDFVT+
Sbjct: 363 ATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTT 422
Query: 413 KDS--SLLSPGTCYLTEVDSMFRRFYAKKENTSNAAT 447
K+ LL+PGT YL EVDS++RRFY KK + A
Sbjct: 423 KEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSVAN 459
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Devoided of acetoacetyl-CoA thiolase (AACT) activity. Required for the development of both tapetosomes and elaioplasts in tapetal cells and for pollen viability during pollen tube elongation. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 0 |
| >sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/452 (48%), Positives = 300/452 (66%), Gaps = 22/452 (4%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+N+GI +++YFP T V QE LE DGVS+GKYT+GLGQ MAFC + ED+ S+SL V
Sbjct: 4 PENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAV 63
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K+GNT I+G+D+ NACYGGT
Sbjct: 64 NNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGT 123
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
+AL N + W+ES+ WDGR +VV D A VAMLIGP+API FES L
Sbjct: 124 SALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGL 183
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
RG HM + YDFYKP++ SEYP VDGKLS +CY A+D+CY + + FEK G+ FS+ V
Sbjct: 184 RGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQV 243
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D+ +FHSPYNKLVQKSF R+ +NDFL N ++ L Y + ++Y LEKA
Sbjct: 244 DFALFHSPYNKLVQKSFGRMLYNDFLNNP---NDSRYASLEAYKNVKPEDTYFDSVLEKA 300
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ K Y KV P+TL+ KQ+GN Y S Y+ SLL EK + L GKRV+ FSYGSGL
Sbjct: 301 LSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGL 360
Query: 352 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 411
A+ FS ++++ +++IV+ +D+ +L R PE F + + L E R+ K++V
Sbjct: 361 AASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVP 415
Query: 412 SKDSSLLSPGTCYLTEVDSMFRRFYAKKENTS 443
S +++ + PG+ YL+ VD+ R Y + +TS
Sbjct: 416 SDETTNMFPGSFYLSSVDNAGIRKYDRTYSTS 447
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Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P22791|HMCS2_RAT Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/459 (49%), Positives = 294/459 (64%), Gaps = 23/459 (5%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFE 168
GGTA+LFN NW+ES+ WDGRY LVVC D A AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNPRPTGGAGAVAMLIGPKAPLVLE 227
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EG 223
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K +
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNN 287
Query: 224 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 283
+ F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETY 347
Query: 284 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 342
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 343 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 400
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 401 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
E Y +F D+S L PGT YL VD M RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARR 506
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/459 (49%), Positives = 296/459 (64%), Gaps = 23/459 (5%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE ++ V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFE 168
GGTA+LFN NW+ES+SWDGRY +VVC D A AVAMLIGP AP+A E
Sbjct: 168 GGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALE 227
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG-- 223
LRG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G
Sbjct: 228 RGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSD 287
Query: 224 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 283
R F++ D+ Y +FH+P+ K+VQKS ARL FNDFL +S + L + L ++Y
Sbjct: 288 RPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTY 347
Query: 284 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 342
++DL+KA + ++ ++D K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 343 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 400
FSYGSGL A+ FS ++ + P S L +V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQR 467
Query: 401 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
E Y +F D++ L PGT YL VD RR YA++
Sbjct: 468 EQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARR 506
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54869|HMCS2_MOUSE Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/458 (49%), Positives = 293/458 (63%), Gaps = 23/458 (5%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE + V GKYTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ K+ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFE 168
GGTA+LFN NW+ES+ WDGRY LVVC D A AVAMLIGP AP+ E
Sbjct: 168 GGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLE 227
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EG 223
LRG+HM +AYDFYKPNLASEYP+VDGKLS CYL ALD CY + +K +
Sbjct: 228 QGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNN 287
Query: 224 RQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESY 283
+ F++ DV Y +FH+P+ K+VQKS ARL FNDFL ++S + L + L E+Y
Sbjct: 288 QPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETY 347
Query: 284 QSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRV 342
++D++KA + + +++ K + S + GNMYT+SLY ASLL H L G R+
Sbjct: 348 TNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRI 407
Query: 343 IMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLM 400
FSYGSGL A+ FS ++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 408 GAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQR 467
Query: 401 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 438
E Y +F D+S L PGT YL VD M RR YA+
Sbjct: 468 EQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYAR 505
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This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|P54961|HMCS1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/456 (49%), Positives = 300/456 (65%), Gaps = 31/456 (6%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P +VGI+AL++ FP V Q LEV+D VS GKYTVGLGQ M FC++ ED+ S+ LTVV
Sbjct: 3 PSDVGIVALELIFPSQYVDQVDLEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVV 62
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+ L+E++ I +QIGRLEVG+ET++DKSKS+KT LMQ+F+ NTDIEGVD+ NACYGGT
Sbjct: 63 SRLMERWSIPYSQIGRLEVGTETLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGT 120
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
+ALFN ++WVES+SWDGRY LVV D A AVAML+G +AP+ F+ +
Sbjct: 121 SALFNAISWVESSSWDGRYALVVAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDRGV 180
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
R SHM HAYDFYKP+L+S YP VDGKLS CYL ALD CY+ +C K +K G +F + +
Sbjct: 181 RSSHMQHAYDFYKPDLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERL 240
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV------ESYQS 285
D +FH+PY KLVQKS ARL NDF+R + +E+ YS+L + ++Y
Sbjct: 241 DAVLFHAPYCKLVQKSLARLVLNDFVRASE------EERTTKYSSLEALKGVKLEDTYFD 294
Query: 286 RDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIM 344
R++EKA +K +++ K +PS L+ QVGNMYT SLY SLL K + L GKRV +
Sbjct: 295 REVEKAVMTYSKNMFEEKTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVAL 354
Query: 345 FSYGSGLTATMFSLQL-QEGHRPFSLSNIVKVMD-VPGKLKLRHEFPPEKFVDIMKLMEH 402
FSYGSGL ++MFSL++ + SL +V + + +L LRH+ PE+F M+ EH
Sbjct: 355 FSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREH 414
Query: 403 RYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 438
+ + +L PGT YL VDS++RR Y +
Sbjct: 415 NHHKAPYTPEGSIDVLFPGTWYLESVDSLYRRSYKQ 450
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Blattella germanica (taxid: 6973) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|O02734|HMCS2_PIG Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/459 (49%), Positives = 296/459 (64%), Gaps = 25/459 (5%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
+W PK+VGILAL++YFP V Q LE D V G+YTVGLGQ M FCS ED+ S+ L
Sbjct: 49 TW-PKDVGILALEVYFPAQYVDQTDLEKFDNVEAGRYTVGLGQTHMGFCSVQEDINSLCL 107
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
TVV L+E+ ++ +G LEVG+ET+IDKSKS+KT LM++F+ GNTDIEG+D+TNACY
Sbjct: 108 TVVQRLMERTQLPWDSVGWLEVGTETIIDKSKSVKTVLMELFQDSGNTDIEGIDTTNACY 167
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFE 168
GGTA+LFN NWVES++WDGRY +VVC D A AVAML+GP+AP+A E
Sbjct: 168 GGTASLFNAANWVESSAWDGRYAVVVCGDIAVYPRGNSRPTGGAGAVAMLVGPEAPLALE 227
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK------LE 222
LRG+HM +AYDFYKPN SEYP+VDGKLS CYL ALD CY + QK EK +E
Sbjct: 228 RGLRGTHMENAYDFYKPNATSEYPLVDGKLSIQCYLRALDRCYTLYRQKIEKQWKQAGIE 287
Query: 223 GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVES 282
R F++ D+ + +FH+P+ KLVQKS ARL F+DFL S + L + ++
Sbjct: 288 -RHFTLDDLQFMIFHTPFCKLVQKSLARLMFSDFLLADSDTQSSLYKGLEAFRGQKLEDT 346
Query: 283 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKR 341
Y ++D+EKA Q+ + L++ K +PS + GNMYT+SLY ASLL + L G R
Sbjct: 347 YANKDIEKAFQKASLDLFNKKTKPSLYLSLHNGNMYTSSLYGCLASLLSQCSAQDLAGSR 406
Query: 342 VIMFSYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKL 399
+ FSYGSGL A+ +SL++ + P S L +V V D+P +L R PE+F +IM
Sbjct: 407 IGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQ 466
Query: 400 MEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 438
E Y +F D + L PGT YL VD ++RR YA+
Sbjct: 467 REQYYHKVNFTPPGDPNSLFPGTWYLERVDELYRRKYAR 505
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/470 (48%), Positives = 304/470 (64%), Gaps = 24/470 (5%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV+ GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFES 169
GTAA+FN VNW+ES+SWDGRY LVV D A AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 170 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 224
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDK 251
Query: 225 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 284
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 343
RD+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 312 DRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 371
Query: 344 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 401
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLRE 431
Query: 402 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
+ +++ L GT YL VD RR YA++ T N T + G
Sbjct: 432 DTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP-TPNDDTLDEG 480
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/470 (48%), Positives = 303/470 (64%), Gaps = 24/470 (5%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFES 169
GTAA+FN VNW+ES+SWDGRY LVV D A AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 170 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 224
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDK 251
Query: 225 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 284
F++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 343
RD+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+
Sbjct: 312 DRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIG 371
Query: 344 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 401
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLRE 431
Query: 402 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
+ +++ L GT YL VD RR YA++ T N T + G
Sbjct: 432 DTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP-TPNDDTLDEG 480
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
| >sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/463 (48%), Positives = 302/463 (65%), Gaps = 23/463 (4%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ LT
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV L+E++ + IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQKLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFES 169
GTAA+FN VNWVES+SWDGRY LVV D A AVA+LIGP+AP+ F+
Sbjct: 132 GTAAVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDR 191
Query: 170 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 224
LRG+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY + +K + EG +
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIRAQWQKEGKDK 251
Query: 225 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 284
F++ D + +FHSPY KLVQKS AR+F NDFL + + L + + ++Y
Sbjct: 252 DFTLNDFGFMIFHSPYCKLVQKSLARMFLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYF 311
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVI 343
RD+EKA + + +L++ K + S L+ Q GNMYT+S+Y + AS+L + L GKRV
Sbjct: 312 DRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRVG 371
Query: 344 MFSYGSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLME 401
+FSYGSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E
Sbjct: 372 VFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTCVAPDVFAENMKLRE 431
Query: 402 HRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSN 444
+ +++ L GT YL VD RR YA++ T++
Sbjct: 432 DTHHLANYIPQCSIDSLFEGTWYLVRVDEKHRRTYARRPFTND 474
|
This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 3 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 225426749 | 464 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.977 | 0.954 | 0.823 | 0.0 | |
| 356497206 | 471 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.982 | 0.944 | 0.812 | 0.0 | |
| 356539911 | 475 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.982 | 0.936 | 0.812 | 0.0 | |
| 42795470 | 464 | HMG-CoA synthase 2 [Hevea brasiliensis] | 0.975 | 0.952 | 0.819 | 0.0 | |
| 164604966 | 464 | hydroxymethylglutaryl-CoA synthase [Heve | 0.975 | 0.952 | 0.816 | 0.0 | |
| 255537251 | 464 | hydroxymethylglutaryl-CoA synthase, puta | 0.975 | 0.952 | 0.816 | 0.0 | |
| 357481763 | 471 | Hydroxymethylglutaryl-CoA synthase [Medi | 1.0 | 0.961 | 0.794 | 0.0 | |
| 16417956 | 464 | hydroxymethylglutaryl coenzyme A synthas | 0.975 | 0.952 | 0.812 | 0.0 | |
| 378587536 | 467 | 3-hydroxy-3-methylglutaryl-CoA synthase | 0.977 | 0.948 | 0.802 | 0.0 | |
| 356563228 | 460 | PREDICTED: hydroxymethylglutaryl-CoA syn | 0.977 | 0.963 | 0.814 | 0.0 |
| >gi|225426749|ref|XP_002282434.1| PREDICTED: hydroxymethylglutaryl-CoA synthase [Vitis vinifera] gi|297742614|emb|CBI34763.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/460 (82%), Positives = 407/460 (88%), Gaps = 17/460 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALEVHDG SKGKYT+GLGQDCMAFCSEVEDVISMSLTVVT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEVHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFE+ GN DIEGVDS+NACYGGTA
Sbjct: 63 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES+SWDGRYGLVVCTD+A A+AML+GPDAPIAFESKLR
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK C K+EKLEG+QFS+ D D
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKLLCSKYEKLEGKQFSIADAD 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FND +RNASSVDE K+KL P+S+LS ESYQ+RDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDVVRNASSVDEAGKQKLEPFSSLSGDESYQNRDLEKAS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQPSTL+PKQVGNMYTASLYAAF S+LH KHS L GKRV+MFSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPSTLLPKQVGNMYTASLYAAFVSVLHNKHSELSGKRVVMFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFS QL++G PFSLSNI VMDV GKLK RHEFPPEKFV+I+KLMEHRYGAKDFVTS
Sbjct: 363 ATMFSFQLRDGQHPFSLSNIATVMDVAGKLKARHEFPPEKFVEILKLMEHRYGAKDFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGA 452
KD SLL PGT YLTEVDSM+RRFY+KK + + TCENG+
Sbjct: 423 KDCSLLPPGTHYLTEVDSMYRRFYSKK---AGSCTCENGS 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497206|ref|XP_003517453.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/459 (81%), Positives = 407/459 (88%), Gaps = 14/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FC+EVEDVISMSLTVVT
Sbjct: 3 KNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES SWDGRYGLVVCTD+A A+AMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMA+DSCYK FC KF+K +G+QFS+ D +
Sbjct: 183 GSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKFQKFQGKQFSLFDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARLFFNDFL N+SS DE+AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLFFNDFLMNSSSADEVAKEKLGPFATLSGDESYQSRDLEKAS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
Q +AK LYD KVQP+TLIPKQVGNMYTASLYAAFASL+H KHS+L GKRVI+FSYGSGLT
Sbjct: 303 QLLAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSLQL++ PFSLSN+ +VM+V GKLK RHEFPPE+FV+ +KLMEHRYGAK+FVTS
Sbjct: 363 ATMFSLQLRDSQHPFSLSNMARVMNVDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KDSSLLSPGT YLTEVDSM+RRFY+KK S+ ENG
Sbjct: 423 KDSSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTHAENG 461
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539911|ref|XP_003538436.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/459 (81%), Positives = 407/459 (88%), Gaps = 14/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FC+EVEDVISMSLTVVT
Sbjct: 3 KNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY+IDP +GRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYEIDPKLVGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES SWDGRYGLVVCTD+A A+AMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSH YDFYKPNLASEYPVVDGKLSQTCYLMA+DSCYK FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKYEKFEGKQFSLSDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDFL N+SSVDE+AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFLMNSSSVDEVAKEKLGPFATLSGDESYQSRDLEKAS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASL+H K+S+L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKNSTLAGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSLQL++ PFSLSNI +VMDV GKLK RHEFPPE+FV+ +KLMEHRYG K+FVTS
Sbjct: 363 ATMFSLQLRDSQHPFSLSNIARVMDVDGKLKSRHEFPPEEFVENLKLMEHRYGGKEFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KD+SLLSPGT YLTEVDSM+RRFY+KK S+ ENG
Sbjct: 423 KDTSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTPAENG 461
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42795470|gb|AAS46245.1| HMG-CoA synthase 2 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/459 (81%), Positives = 404/459 (88%), Gaps = 17/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDS NACYGGTA
Sbjct: 63 SLLEKYNIDPNQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSANACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES SWDGRYGLVVCTD+A A+AMLIGP+APIAFESK R
Sbjct: 123 ALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESKFR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EKLEG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDF+RNASS+D+ AKEKLAP+STLS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L EG PFSLSNI VM+V GKLK RHEFPPEKF IMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KD S+L+PGT YLTEVD+M+RRFYA+K + T ENG
Sbjct: 423 KDCSILAPGTYYLTEVDTMYRRFYAQK---AVGDTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164604966|dbj|BAF98279.1| hydroxymethylglutaryl-CoA synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/459 (81%), Positives = 405/459 (88%), Gaps = 17/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCM FC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAMDIYFPPTYVQQEALEAHDGASKGKYTIGLGQDCMPFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+KY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES+SWDGRYGLVVCTD+A A+AMLIGP+APIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPEAPIAFESKFR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EKLEG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKLEGKQFSISDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDF+RNASS+D+ AKEKLAP+STLS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDDAAKEKLAPFSTLSGDESYQNRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKHTELAGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L EG PFSLSNI VM+V GKLK RHEFPPEKF IMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVAGKLKTRHEFPPEKFAVIMKLMEHRYGAKDFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KD S+L+PGT YLTEVD+M+RRFYA+K + T ENG
Sbjct: 423 KDCSILAPGTYYLTEVDTMYRRFYAQK---AVGDTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537251|ref|XP_002509692.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] gi|223549591|gb|EEF51079.1| hydroxymethylglutaryl-CoA synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/459 (81%), Positives = 404/459 (88%), Gaps = 17/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILALDIYFPPTCV QEALE HDG SKGKYT+GLGQDCM FC+EVEDVISMSLT VT
Sbjct: 3 KNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMGFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+ Y IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDS+NACYGGTA
Sbjct: 63 SLLDNYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKHGNTDIEGVDSSNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES+SWDGRYGLVVCTD+A A+AMLIGPDAPIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKYR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDF+RNASS+DE AKEKLAP+STL+ ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDEAAKEKLAPFSTLTGDESYQNRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQP+TLIPKQVGNMYTASLYAAFASLLH K+S L GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFASLLHNKNSKLAGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L EG PFSLSNI VM+V KLK RHEF PEKFV+ MKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIATVMNVTDKLKSRHEFSPEKFVETMKLMEHRYGAKDFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
+D SLL+PGT YLTEVD+M+RRFYAKK + TCENG
Sbjct: 423 QDCSLLAPGTYYLTEVDTMYRRFYAKKLVDN---TCENG 458
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481763|ref|XP_003611167.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|355512502|gb|AES94125.1| Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/467 (79%), Positives = 407/467 (87%), Gaps = 14/467 (2%)
Query: 1 MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISM 60
M NVGILALDIYFPP CV QEALE HDG SKGKYT+GLGQDCM+FCS+VEDVISM
Sbjct: 1 MAPAAANNVGILALDIYFPPNCVQQEALEAHDGASKGKYTIGLGQDCMSFCSDVEDVISM 60
Query: 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNA 120
SLTVV++LL+KY+IDP QIGRLEVGSETVIDKSKSIK+FLMQIFEKYGNTDIEGVDSTNA
Sbjct: 61 SLTVVSTLLQKYEIDPKQIGRLEVGSETVIDKSKSIKSFLMQIFEKYGNTDIEGVDSTNA 120
Query: 121 CYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIA 166
CYGGTAALFNCVNWVES SWDGRYGLVVCTD+A A+AMLIGPDAPI+
Sbjct: 121 CYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIS 180
Query: 167 FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQF 226
FESKLRGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALD+C+K FCQK+EK EG+QF
Sbjct: 181 FESKLRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDTCFKNFCQKYEKHEGKQF 240
Query: 227 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286
S+ D DYFVFHSPYNKLVQKSFARL F+DFLRN SS DE+ EKL P++TLSD ESYQSR
Sbjct: 241 SLSDADYFVFHSPYNKLVQKSFARLVFSDFLRNPSSKDEVTNEKLGPFTTLSDDESYQSR 300
Query: 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFS 346
DLEKASQQVAK LYD KVQPSTLIPKQVGNMYTAS+YAAFASLLH K+SSLEGKRVI+FS
Sbjct: 301 DLEKASQQVAKPLYDEKVQPSTLIPKQVGNMYTASIYAAFASLLHNKNSSLEGKRVILFS 360
Query: 347 YGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGA 406
YGSGLTATMFSLQL+E PFSLSNI +VMDV KLK RHEFPP+KF++ +KLMEHRYGA
Sbjct: 361 YGSGLTATMFSLQLRETKHPFSLSNIARVMDVAEKLKSRHEFPPQKFIETLKLMEHRYGA 420
Query: 407 KDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGAS 453
KD+VTSKDSSLL+PGT YLTEVD+M+RRFY K + SN NG S
Sbjct: 421 KDYVTSKDSSLLAPGTFYLTEVDTMYRRFYTTKSSESNLTPAVNGLS 467
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16417956|gb|AAL18930.1|AF429389_1 hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/459 (81%), Positives = 403/459 (87%), Gaps = 17/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPT V QEALE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLT VT
Sbjct: 3 KNVGILAVDIYFPPTFVQQEALEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLL+KY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFEK+GNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLDKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES+SWDGRYGLVVCTD+A A+A+L+GPDAPIAFESK R
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAILVGPDAPIAFESKFR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+FC K+EK EG+QFS+ D +
Sbjct: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCAKYEKFEGKQFSISDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDF+RNASS+DE AKEKLAP+S LS ESYQ+RDLEK S
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFVRNASSIDETAKEKLAPFSNLSGDESYQNRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KV+P+TLIPKQVGNMYTASLYAAFASLLH KH+ L GKRV +FSYGSGLT
Sbjct: 303 QQVAKPLYDAKVKPTTLIPKQVGNMYTASLYAAFASLLHSKHTELAGKRVTLFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L EG PFSLSNI VM+V GKLK RHE PPEKFVDIMKLMEHRYGAKDFVTS
Sbjct: 363 ATMFSLRLHEGQHPFSLSNIASVMNVAGKLKARHELPPEKFVDIMKLMEHRYGAKDFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KD SLL+ GT YLTEVDS++RRFYA+K + T ENG
Sbjct: 423 KDCSLLASGTYYLTEVDSLYRRFYAQK---AVGNTVENG 458
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|378587536|gb|AFC34137.1| 3-hydroxy-3-methylglutaryl-CoA synthase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/460 (80%), Positives = 407/460 (88%), Gaps = 17/460 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA++IYFPPTCV QEALE HDGVSKGKYT+GLGQDC+AFC+EVEDVISMSLT VT
Sbjct: 6 KNVGILAVEIYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCLAFCTEVEDVISMSLTAVT 65
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQIFE+ GNTDIEGVDSTNACYGGTA
Sbjct: 66 SLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEETGNTDIEGVDSTNACYGGTA 125
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES+SWDGRYGLVVCTD+A A+AMLIGPDAPIAFESK+R
Sbjct: 126 ALLNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKIR 185
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHMSH YDFY+PNLASEYPVVDGKLSQTCYLMA+DSCY C K+EK EG+QFS+ D D
Sbjct: 186 GSHMSHVYDFYRPNLASEYPVVDGKLSQTCYLMAVDSCYNRLCNKYEKFEGKQFSVNDAD 245
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDFLRNASS++E AKEKLAP+STL+ ESYQSRDLEKA+
Sbjct: 246 YFVFHSPYNKLVQKSFARLLFNDFLRNASSINEAAKEKLAPFSTLTGDESYQSRDLEKAT 305
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK LYD KVQP+TL+PKQVGNMYTASLYAAFASL+H+KHSSL G+R++MFSYGSGLT
Sbjct: 306 QQVAKALYDAKVQPTTLVPKQVGNMYTASLYAAFASLIHKKHSSLVGQRIVMFSYGSGLT 365
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFS +++E PFSLSNI VM+V KLK RHEFPPEKFV+ MK+MEHRYGAKDFVTS
Sbjct: 366 ATMFSFRVRECQHPFSLSNIAAVMNVDKKLKSRHEFPPEKFVETMKVMEHRYGAKDFVTS 425
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENGA 452
KD SLL+PGT YLTEVDSM+RRFYAKK +T+ CENG+
Sbjct: 426 KDCSLLAPGTYYLTEVDSMYRRFYAKKASTT---ACENGS 462
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563228|ref|XP_003549866.1| PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/459 (81%), Positives = 404/459 (88%), Gaps = 16/459 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTC+ QE LE HDG SKGKYT+GLGQDCMAFC+EVEDVISMSLTVV+
Sbjct: 3 KNVGILAIDIYFPPTCIQQELLEAHDGASKGKYTIGLGQDCMAFCTEVEDVISMSLTVVS 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTF+MQIFEKYGNTDIEGVDSTNACYGGTA
Sbjct: 63 SLLEKYAIDPKQIGRLEVGSETVIDKSKSIKTFIMQIFEKYGNTDIEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
ALFNCVNWVES+SWDGRYGLVVCTD+A AVAMLIGPDAPI+FESKLR
Sbjct: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPISFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHM+HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCY + K+EK EG+QFS+ D +
Sbjct: 183 GSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKQEGKQFSISDAE 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL FNDFL+NAS VDE AKEKL P++TLS ESYQSRDLEKAS
Sbjct: 243 YFVFHSPYNKLVQKSFARLVFNDFLKNASFVDEAAKEKLEPFATLSGDESYQSRDLEKAS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQVAK YD KVQP+TLIPKQVGNMYTASLYAAF SL+H KHS+L+GKRVI+FSYGSGLT
Sbjct: 303 QQVAKPQYDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLT 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
+TMFSL L+EG PFSLSNI K+MDV GKLK RHEFPPEKFV+ MKLMEHRYG K+FVTS
Sbjct: 363 STMFSLLLREGQHPFSLSNIDKMMDVAGKLKSRHEFPPEKFVETMKLMEHRYGGKEFVTS 422
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451
KD+SLLSPGT YLTEVDSM+RRFYAKK TS NG
Sbjct: 423 KDTSLLSPGTFYLTEVDSMYRRFYAKK--TSENGLVTNG 459
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| TAIR|locus:2137015 | 461 | HMGS "HYDROXYMETHYLGLUTARYL-CO | 0.971 | 0.954 | 0.767 | 9.8e-190 | |
| DICTYBASE|DDB_G0288461 | 482 | hgsA "hydroxymethylglutaryl-Co | 0.949 | 0.892 | 0.491 | 3.3e-111 | |
| CGD|CAL0004537 | 451 | ERG13 [Candida albicans (taxid | 0.951 | 0.955 | 0.454 | 4.7e-96 | |
| UNIPROTKB|Q5A3Z7 | 451 | ERG13 "Putative uncharacterize | 0.951 | 0.955 | 0.454 | 4.7e-96 | |
| DICTYBASE|DDB_G0274871 | 468 | hgsB "hydroxymethylglutaryl-Co | 0.772 | 0.747 | 0.5 | 9e-93 | |
| POMBASE|SPAC4F8.14c | 447 | hcs1 "3-hydroxy-3-methylglutar | 0.942 | 0.955 | 0.435 | 4.6e-89 | |
| SGD|S000004595 | 491 | ERG13 "3-hydroxy-3-methylgluta | 0.942 | 0.869 | 0.438 | 5.3e-88 | |
| ASPGD|ASPL0000074231 | 459 | AN4923 [Emericella nidulans (t | 0.461 | 0.455 | 0.591 | 5.3e-73 | |
| UNIPROTKB|Q01581 | 520 | HMGCS1 "Hydroxymethylglutaryl- | 0.470 | 0.409 | 0.614 | 1.1e-71 | |
| UNIPROTKB|F1N9T0 | 522 | HMGCS1 "Hydroxymethylglutaryl- | 0.470 | 0.408 | 0.618 | 1.1e-71 |
| TAIR|locus:2137015 HMGS "HYDROXYMETHYLGLUTARYL-COA SYNTHASE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1839 (652.4 bits), Expect = 9.8e-190, P = 9.8e-190
Identities = 350/456 (76%), Positives = 388/456 (85%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 3 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 62
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SL EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 63 SLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 122
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES SWDGRYGLV+CTD+A A+AMLIGPDAPI FESKLR
Sbjct: 123 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 182
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEK+EG++FS+ D D
Sbjct: 183 ASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDAD 242
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
Y VFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+L+ ESYQSRDLEK S
Sbjct: 243 YIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVS 302
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQ+AK YD KVQP+TLIPK+VGNMYTASLYAAFASL+H+KH+ L GKRV+MFSYGSG T
Sbjct: 303 QQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGST 362
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L + PFS+SNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAKDFVT+
Sbjct: 363 ATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTT 422
Query: 413 KDS--SLLSPGTCYLTEVDSMFRRFYAKKENTSNAA 446
K+ LL+PGT YL EVDS++RRFY KK + A
Sbjct: 423 KEGIIDLLAPGTYYLKEVDSLYRRFYGKKGEDGSVA 458
|
|
| DICTYBASE|DDB_G0288461 hgsA "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 222/452 (49%), Positives = 301/452 (66%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+N+GI +++YFP T V QE LE DGVS+GKYT+GLGQ MAFC + ED+ S+SL V
Sbjct: 4 PENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAV 63
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L++K+ +DP IGRLEVG+ETVIDKSKS+KT LM +F K+GNT I+G+D+ NACYGGT
Sbjct: 64 NNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGT 123
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTAA--------------VAMLIGPDAPIAFESKL 171
+AL N + W+ES+ WDGR +VV D A VAMLIGP+API FES L
Sbjct: 124 SALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFESGL 183
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
RG HM + YDFYKP++ SEYP VDGKLS +CY A+D+CY + + FEK G+ FS+ V
Sbjct: 184 RGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQV 243
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D+ +FHSPYNKLVQKSF R+ +NDFL N + A L Y + ++Y LEKA
Sbjct: 244 DFALFHSPYNKLVQKSFGRMLYNDFLNNPND-SRYAS--LEAYKNVKPEDTYFDSVLEKA 300
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ K Y KV P+TL+ KQ+GN Y S Y+ SLL EK + L GKRV+ FSYGSGL
Sbjct: 301 LSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGL 360
Query: 352 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 411
A+ FS +++ +P +++IV+ +D+ +L R PE F + + L E R+ K++V
Sbjct: 361 AASAFSFKVE---KP--INHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVP 415
Query: 412 SKDSSLLSPGTCYLTEVDSMFRRFYAKKENTS 443
S +++ + PG+ YL+ VD+ R Y + +TS
Sbjct: 416 SDETTNMFPGSFYLSSVDNAGIRKYDRTYSTS 447
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| CGD|CAL0004537 ERG13 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 208/458 (45%), Positives = 290/458 (63%)
Query: 1 MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISM 60
MT+ P+N+GI +++Y P V Q LE DG+ +GKYT+GLGQ MAF ++ ED+ S+
Sbjct: 3 MTN-SPQNIGIKGIEVYIPGQAVNQSDLEKFDGIPQGKYTIGLGQTNMAFVNDREDIYSI 61
Query: 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNA 120
SLTV++ L++ Y ID +IGRLEVG+ET++DKSKS+K+ LMQ+F GN DIEG+D+ NA
Sbjct: 62 SLTVLSRLIKNYSIDTNKIGRLEVGTETLLDKSKSVKSVLMQLFP--GNNDIEGIDTVNA 119
Query: 121 CYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIA 166
CYGGT+++ N +NW+ES+SWDGR +VV D A A+A+LIGPDAPI
Sbjct: 120 CYGGTSSVINAINWIESSSWDGRDAIVVAGDIAIYDKGAARPTGGVGAIALLIGPDAPIV 179
Query: 167 FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQF 226
F+S +RGS M HAYDFYKP+ SEYPVVDG S +CY+ A+D+CYK + +K +
Sbjct: 180 FDS-IRGSFMEHAYDFYKPDFTSEYPVVDGHFSLSCYVKAVDNCYKNYSKKITGDANKTV 238
Query: 227 SMLD-VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPY-STLSDVESYQ 284
+ D D+ FH P KLV KS+ARL +ND++ N S ++ E + L+ ES
Sbjct: 239 GVYDHFDFSAFHVPTCKLVTKSYARLLYNDYVSNPSKFADLIDETTRKHIDGLTYDESLT 298
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHS-SLEGKRVI 343
+ LEK +AK +VQP+ +P GNMYTAS + + ASLL+ S +L+ KR+
Sbjct: 299 DKILEKTFVGLAKDETKKRVQPALQVPTNTGNMYTASAWVSLASLLYYVGSDNLKNKRIS 358
Query: 344 MFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFP-PEKFVDIMKLMEH 402
+FSYGSGL +T+ S+ ++ G +S I KV+D KL + PE ++ ++L E
Sbjct: 359 IFSYGSGLASTLLSVTVK-G----DVSAITKVLDFDYKLGDGRKIQSPEDYLAAIELREK 413
Query: 403 RYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440
+ K F + LS GT YLTE+D FRR YA KE
Sbjct: 414 AHLQKSFKPQGSTDNLSQGTYYLTEIDDKFRRAYAIKE 451
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| UNIPROTKB|Q5A3Z7 ERG13 "Putative uncharacterized protein ERG13" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 208/458 (45%), Positives = 290/458 (63%)
Query: 1 MTSWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISM 60
MT+ P+N+GI +++Y P V Q LE DG+ +GKYT+GLGQ MAF ++ ED+ S+
Sbjct: 3 MTN-SPQNIGIKGIEVYIPGQAVNQSDLEKFDGIPQGKYTIGLGQTNMAFVNDREDIYSI 61
Query: 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNA 120
SLTV++ L++ Y ID +IGRLEVG+ET++DKSKS+K+ LMQ+F GN DIEG+D+ NA
Sbjct: 62 SLTVLSRLIKNYSIDTNKIGRLEVGTETLLDKSKSVKSVLMQLFP--GNNDIEGIDTVNA 119
Query: 121 CYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIA 166
CYGGT+++ N +NW+ES+SWDGR +VV D A A+A+LIGPDAPI
Sbjct: 120 CYGGTSSVINAINWIESSSWDGRDAIVVAGDIAIYDKGAARPTGGVGAIALLIGPDAPIV 179
Query: 167 FESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQF 226
F+S +RGS M HAYDFYKP+ SEYPVVDG S +CY+ A+D+CYK + +K +
Sbjct: 180 FDS-IRGSFMEHAYDFYKPDFTSEYPVVDGHFSLSCYVKAVDNCYKNYSKKITGDANKTV 238
Query: 227 SMLD-VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPY-STLSDVESYQ 284
+ D D+ FH P KLV KS+ARL +ND++ N S ++ E + L+ ES
Sbjct: 239 GVYDHFDFSAFHVPTCKLVTKSYARLLYNDYVSNPSKFADLIDETTRKHIDGLTYDESLT 298
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHS-SLEGKRVI 343
+ LEK +AK +VQP+ +P GNMYTAS + + ASLL+ S +L+ KR+
Sbjct: 299 DKILEKTFVGLAKDETKKRVQPALQVPTNTGNMYTASAWVSLASLLYYVGSDNLKNKRIS 358
Query: 344 MFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFP-PEKFVDIMKLMEH 402
+FSYGSGL +T+ S+ ++ G +S I KV+D KL + PE ++ ++L E
Sbjct: 359 IFSYGSGLASTLLSVTVK-G----DVSAITKVLDFDYKLGDGRKIQSPEDYLAAIELREK 413
Query: 403 RYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440
+ K F + LS GT YLTE+D FRR YA KE
Sbjct: 414 AHLQKSFKPQGSTDNLSQGTYYLTEIDDKFRRAYAIKE 451
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| DICTYBASE|DDB_G0274871 hgsB "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 185/370 (50%), Positives = 253/370 (68%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
K++GI A+DIYFP T V Q L+ +D VS GKYT+GLGQ M+F + ED++SM++T V
Sbjct: 5 KDIGICAIDIYFPQTYVNQSELKKYDKVSNGKYTIGLGQTNMSFVGDREDIVSMAMTSVK 64
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
++ KY ID IGRLEVG+ET+IDKSKS+K+ +M +F++YGNT +EGVD+ NACYGGT
Sbjct: 65 MMMSKYSIDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEYGNTSLEGVDTLNACYGGTN 124
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTAA--------------VAMLIGPDAPIAFESKLR 172
ALFN + W+ES+ WDGRY LVV D A V MLIGP+A + F+ LR
Sbjct: 125 ALFNSLQWIESSYWDGRYALVVTGDIAVYSKGAARPTGGAGVVTMLIGPNATLIFDQSLR 184
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-EGRQFSMLDV 231
G+HM + DFYKP+L+SEYP VDGKLS CYL ALD CY + +KFE + + +FSM
Sbjct: 185 GTHMENVNDFYKPDLSSEYPYVDGKLSIECYLRALDKCYLEYKKKFESINDDNKFSMDSF 244
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSD-VESYQSRDLEK 290
DY FHSPYN+LVQKS+ARL +NDFL+N ++ + L P+ LS +SY + L++
Sbjct: 245 DYVCFHSPYNRLVQKSYARLIYNDFLQNPNNPKY---QDLLPFKDLSTGKDSYINSKLDQ 301
Query: 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350
+ +++ + KV PSTL+ K+ GN Y S+Y+ SLL + L K+V++FSYGSG
Sbjct: 302 ITLKLSLDDFKTKVNPSTLLSKECGNSYCGSVYSGILSLLSNVND-LNNKKVLVFSYGSG 360
Query: 351 LTATMFSLQL 360
L A++FS ++
Sbjct: 361 LAASLFSFRI 370
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| POMBASE|SPAC4F8.14c hcs1 "3-hydroxy-3-methylglutaryl-CoA synthase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 198/455 (43%), Positives = 275/455 (60%)
Query: 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSL 62
S+ K++GI L +Y P V Q ALE HDGVS GKYT+GLG MAF + ED+ S L
Sbjct: 2 SFDRKDIGIKGLVLYTPNQYVEQAALEAHDGVSTGKYTIGLGLTKMAFVDDREDIYSFGL 61
Query: 63 TVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122
T ++ L+++Y+ID ++IGRLEVG+ET+IDKSKS+K+ LMQ+F N ++EG+D NACY
Sbjct: 62 TALSQLIKRYQIDISKIGRLEVGTETIIDKSKSVKSVLMQLFGD--NHNVEGIDCVNACY 119
Query: 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFE 168
GG ALFN ++W+ES++WDGR G+VV D A VA+L+GP+API FE
Sbjct: 120 GGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGGAGCVALLVGPNAPIVFE 179
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
LRG++M HAYDFYKP+L SEYP VDG S CY+ ALD Y + + G+ +
Sbjct: 180 PGLRGTYMQHAYDFYKPDLTSEYPYVDGHFSLECYVKALDGAYANYNVRDVAKNGKSQGL 239
Query: 229 -LD-VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVD-EIAKEKLAPYSTLSDVESYQS 285
LD DY +FH+P K VQK++ARL + D S+ + E +E L STL +S
Sbjct: 240 GLDRFDYCIFHAPTCKQVQKAYARLLYTDSAAEPSNPELEGVRELL---STLDAKKSLTD 296
Query: 286 RDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIM 344
+ LEK + K+ ++ +V PS P GNMYTAS+++ +LL + L+GKRV
Sbjct: 297 KALEKGLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKRVGA 356
Query: 345 FSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRY 404
+SYGSGL A+ FS ++ G +S I K ++ L RH P ++ + ++L +
Sbjct: 357 YSYGSGLAASFFSFVVK-G----DVSEIAKKTNLVNDLDNRHCLTPTQYEEAIELRHQAH 411
Query: 405 GAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
K+F L GT YLT +D MFRR Y+ K
Sbjct: 412 LKKNFTPKGSIERLRSGTYYLTGIDDMFRRSYSVK 446
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| SGD|S000004595 ERG13 "3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 199/454 (43%), Positives = 276/454 (60%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+NVGI + IY P CV Q LE DGVS+GKYT+GLGQ M+F ++ ED+ SMSLTV+
Sbjct: 46 PQNVGIKGIQIYIPTQCVNQSELEKFDGVSQGKYTIGLGQTNMSFVNDREDIYSMSLTVL 105
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+ L++ Y ID +IGRLEVG+ET+IDKSKS+K+ LMQ+F + NTD+EG+D+ NACYGGT
Sbjct: 106 SKLIKSYNIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGE--NTDVEGIDTLNACYGGT 163
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
ALFN +NW+ES +WDGR +VVC D A VAM IGPDAPI F+S +
Sbjct: 164 NALFNSLNWIESNAWDGRDAIVVCGDIAIYDKGAARPTGGAGTVAMWIGPDAPIVFDS-V 222
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK-FEK---LEGRQFS 227
R S+M HAYDFYKP+ SEYP VDG S TCY+ ALD YK + +K K +
Sbjct: 223 RASYMEHAYDFYKPDFTSEYPYVDGHFSLTCYVKALDQVYKSYSKKAISKGLVSDPAGSD 282
Query: 228 MLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRD 287
L+V + ++ ++ K + + + + ++ E A +T ES ++
Sbjct: 283 ALNVLKYFDYNVFHVPTCKLVTKSYGRLLYNDFRANPQLFPEVDAELATRDYDESLTDKN 342
Query: 288 LEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIMFS 346
+EK VAK + +V S ++P GNMYTAS+YAAFASLL+ S L+GKRV +FS
Sbjct: 343 IEKTFVNVAKPFHKERVAQSLIVPTNTGNMYTASVYAAFASLLNYVGSDDLQGKRVGLFS 402
Query: 347 YGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGA 406
YGSGL A+++S ++ G + +I+K +D+ KL R P+ + ++L E+ +
Sbjct: 403 YGSGLAASLYSCKIV-G----DVQHIIKELDITNKLAKRITETPKDYEAAIELRENAHLK 457
Query: 407 KDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440
K+F L G YLT +D FRR Y K+
Sbjct: 458 KNFKPQGSIEHLQSGVYYLTNIDDKFRRSYDVKK 491
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| ASPGD|ASPL0000074231 AN4923 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 132/223 (59%), Positives = 170/223 (76%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
P+N+GI A+++YFP C+ Q LE HDGVS+GKYT+GLGQ M+FC + ED+ S++LT +
Sbjct: 4 PQNIGIKAIEVYFPSQCLDQTELEKHDGVSEGKYTIGLGQSKMSFCDDREDIYSIALTTL 63
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+SL++KY IDP +GRLEVG+ET++DKSKS+K+ LMQ+F +GNT+IEGVD+ NACYGGT
Sbjct: 64 SSLMKKYNIDPNSVGRLEVGTETLLDKSKSVKSVLMQLFAPHGNTNIEGVDTVNACYGGT 123
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
ALFN +NWVES++WDGR +VVC D A VAMLIGPDAPI FE L
Sbjct: 124 NALFNSINWVESSAWDGRDAVVVCGDIALYAKGAARPTGGAGCVAMLIGPDAPIIFEPGL 183
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYF 214
R S+++HAYDFYKP+L SEYPVVDG S CY A+D+CYK +
Sbjct: 184 RASYLTHAYDFYKPDLTSEYPVVDGHFSLRCYTEAVDACYKAY 226
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| UNIPROTKB|Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 140/228 (61%), Positives = 173/228 (75%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYG
Sbjct: 72 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFES 169
GTAA+FN VNW+ES+SWDGRY LVV D A AVA+LIGP+AP+ FE
Sbjct: 132 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
Query: 170 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 217
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K
Sbjct: 192 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKK 239
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| UNIPROTKB|F1N9T0 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 141/228 (61%), Positives = 170/228 (74%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
W PK+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FCS+ ED+ S+ LT
Sbjct: 13 W-PKDVGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLT 71
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYG
Sbjct: 72 VVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYG 131
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFES 169
GTAALFN +NW+ES+SWDGRY LVV D A AVAML+GP+AP+ FE
Sbjct: 132 GTAALFNAINWIESSSWDGRYALVVAGDIAVYATGNARPTGGAGAVAMLVGPNAPLIFER 191
Query: 170 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQK 217
LRG+HM HAYDFYKP++ SEYPVVDGKLS CYL ALD CY + K
Sbjct: 192 GLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNK 239
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P22791 | HMCS2_RAT | 2, ., 3, ., 3, ., 1, 0 | 0.4923 | 0.9624 | 0.8582 | yes | no |
| P54873 | HMCS_ARATH | 2, ., 3, ., 3, ., 1, 0 | 0.7658 | 0.9735 | 0.9566 | yes | no |
| P54872 | HMCSA_DICDI | 2, ., 3, ., 3, ., 1, 0 | 0.4867 | 0.9492 | 0.8921 | yes | no |
| P54874 | HMCS_SCHPO | 2, ., 3, ., 3, ., 1, 0 | 0.4373 | 0.9426 | 0.9552 | yes | no |
| P54871 | HMCS_CAEEL | 2, ., 3, ., 3, ., 1, 0 | 0.3569 | 0.9403 | 0.9220 | yes | no |
| P54839 | HMCS_YEAST | 2, ., 3, ., 3, ., 1, 0 | 0.4618 | 0.9359 | 0.8635 | yes | no |
| P54869 | HMCS2_MOUSE | 2, ., 3, ., 3, ., 1, 0 | 0.4934 | 0.9602 | 0.8562 | yes | no |
| P54868 | HMCS2_HUMAN | 2, ., 3, ., 3, ., 1, 0 | 0.4901 | 0.9624 | 0.8582 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.3 | 0.983 |
| 3rd Layer | 2.3.3.10 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00001077001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (464 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00001656001 | SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (242 aa) | • | • | • | • | 0.883 | ||||
 | GSVIVG00029076001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa) | • | • | • | • | 0.567 | ||||
 | GSVIVG00022848001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (388 aa) | • | • | • | 0.543 | |||||
 | GSVIVG00006002001 | SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (552 aa) | • | • | • | 0.499 | |||||
 | GSVIVG00033429001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (341 aa) | • | • | 0.481 | ||||||
 | GSVIVG00002942001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (550 aa) | • | • | • | 0.473 | |||||
 | GSVIVG00036301001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (575 aa) | • | • | • | 0.458 | |||||
 | GSVIVG00035946001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (413 aa) | • | • | 0.411 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| PLN02577 | 459 | PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt | 0.0 | |
| TIGR01833 | 457 | TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar | 0.0 | |
| pfam08540 | 282 | pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-c | 1e-140 | |
| COG3425 | 377 | COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt | 9e-94 | |
| pfam01154 | 171 | pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c | 9e-82 | |
| cd00827 | 324 | cd00827, init_cond_enzymes, "initiating" condensin | 2e-77 | |
| TIGR01835 | 379 | TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta | 5e-44 | |
| PRK04262 | 347 | PRK04262, PRK04262, hypothetical protein; Provisio | 2e-12 | |
| TIGR00748 | 345 | TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl- | 3e-10 | |
| COG0332 | 323 | COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | 4e-05 | |
| cd00830 | 320 | cd00830, KAS_III, Ketoacyl-acyl carrier protein sy | 6e-04 |
| >gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Score = 867 bits (2243), Expect = 0.0
Identities = 361/458 (78%), Positives = 395/458 (86%), Gaps = 15/458 (3%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PKNVGILA+++YFPPTCV QEALE HDGVSKGKYT+GLGQDCMAFC++VEDVISMSLTVV
Sbjct: 2 PKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVV 61
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
SLLEKY IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FE+ GNTDIEGVDSTNACYGGT
Sbjct: 62 KSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGT 121
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
AAL NCVNWVES+SWDGRYGLVV D+A AVAML+GP+API FESK
Sbjct: 122 AALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTGGAGAVAMLVGPNAPIVFESKY 181
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
RGSHM+H YDFYKP+LASEYPVVDGKLSQTCYLMALDSCYK FC+K+EKLEG+QFS+ D
Sbjct: 182 RGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISDA 241
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
DYFVFH+PYNKLVQKSFARL +NDF RNASSVDE AKEKLAP++ LS ESYQ+RDLEK
Sbjct: 242 DYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKV 301
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
SQQVAK LYD KVQP+TLIPKQVGNMYTASLYAA ASL+H KHS L GKR++MFSYGSGL
Sbjct: 302 SQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGL 361
Query: 352 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 411
TATMFSL+L EG PFSLSNI KVMDV KLK RHE PEKFV+ +KLMEHRYGAKDFV
Sbjct: 362 TATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSPEKFVETLKLMEHRYGAKDFVP 421
Query: 412 SKDSSLLSPGTCYLTEVDSMFRRFYAKK-ENTSNAATC 448
SKD SLL+PGT YLTEVDS++RRFY +K N S A
Sbjct: 422 SKDVSLLAPGTYYLTEVDSLYRRFYDRKALNGSIANGH 459
|
Length = 459 |
| >gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Score = 688 bits (1778), Expect = 0.0
Identities = 265/456 (58%), Positives = 319/456 (69%), Gaps = 22/456 (4%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PK+VGILAL+IYFP V Q LE +DGVS GKYT+GLGQ M FC++ ED+ S+ LTVV
Sbjct: 2 PKDVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVV 61
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+ L+E+Y ID QIGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGGT
Sbjct: 62 SKLMERYNIDYDQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGT 121
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
AALFN +NW+ES+SWDGRY LVV D A AVAMLIGP+API FE L
Sbjct: 122 AALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAGAVAMLIGPNAPIVFERGL 181
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEG-----RQF 226
RGSHM HAYDFYKP+LASEYPVVDGKLS CYL ALD CYK +C+K EK G R+F
Sbjct: 182 RGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGSDRKF 241
Query: 227 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286
++ D DY +FHSPY KLVQKS ARL +NDFLRN SS D E L S L ++Y R
Sbjct: 242 TLDDFDYMIFHSPYCKLVQKSLARLLYNDFLRNPSSTDTSLYEGLEALSGLKLEDTYTDR 301
Query: 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGKRVIMF 345
DLEKA + +K+L+D K +PS L+P QVGNMYTASLY ASLL K + L GKRV MF
Sbjct: 302 DLEKAFMKASKELFDKKTKPSLLVPTQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMF 361
Query: 346 SYGSGLTATMFSLQLQEGHRPFSLSN--IVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHR 403
SYGSGL A+MFSL++ + P S + I + D+ +L RH PE+F + M+L E
Sbjct: 362 SYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNRLDSRHCVAPEEFEETMELREQA 421
Query: 404 YGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
+ K+F L PGT YL VDS RR YA+K
Sbjct: 422 HHKKNFTPQGSIDSLFPGTWYLERVDSKHRRSYARK 457
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457 |
| >gnl|CDD|219892 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A synthase C terminal | Back alignment and domain information |
|---|
Score = 403 bits (1038), Expect = e-140
Identities = 156/282 (55%), Positives = 187/282 (66%), Gaps = 7/282 (2%)
Query: 165 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE-- 222
I F+ LRGSHM HAYDFYKP+L SEYPVVDGKLS CYL ALDSCYK +C+K EK
Sbjct: 1 IVFDRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKD 60
Query: 223 -GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASS-VDEIAKEKLAPYSTLSDV 280
G +F + D DY +FHSPY KLVQKS ARL +NDFLRN SS EKL L
Sbjct: 61 GGTKFGLDDFDYVIFHSPYCKLVQKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLE 120
Query: 281 ESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEG 339
+SY RDLEKA Q++K L+ K +PS L+P QVGNMYTASLYAA ASLL H L G
Sbjct: 121 DSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLYAALASLLSHVSADELAG 180
Query: 340 KRVIMFSYGSGLTATMFSLQLQEGHRPFSL--SNIVKVMDVPGKLKLRHEFPPEKFVDIM 397
KR+ MFSYGSGL A++FSL++ + P S+ I KV+D+ KL RH PE+F + M
Sbjct: 181 KRIGMFSYGSGLAASLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETM 240
Query: 398 KLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
+L E + K+F L PGT YLT VDS++RR YA+K
Sbjct: 241 ELREQAHHKKNFTPQGSIDSLFPGTYYLTNVDSLYRRSYARK 282
|
Length = 282 |
| >gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 9e-94
Identities = 125/445 (28%), Positives = 190/445 (42%), Gaps = 87/445 (19%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+GI+ + Y P + E L GV K GLG + + ED ++M++ +
Sbjct: 2 MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
L++ IDP++IG + VGSE+ D K T + + N D ACY GTAA
Sbjct: 62 ALKRADIDPSKIGAVIVGSESGPDAVKPTATIVAEALG--LNPSARAADVEFACYAGTAA 119
Query: 128 LFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKLR 172
L + WVES YGLV+ DTA AVA LIG + PI E +
Sbjct: 120 LQAAIGWVESGMIS--YGLVIGADTAQYAPGDALEYTAGAGAVAFLIGKNPPIVAEFEGT 177
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF-EKLEGRQFSMLDV 231
GS+ + DF++P+ YP VDG+ S+ Y +++ K + +K + D
Sbjct: 178 GSYTTDTPDFWRPDG-QPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPD-------DF 229
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
DY VFH P K +K+ L F KE+
Sbjct: 230 DYIVFHQPNGKFPKKAAKSLGF--------------KEE--------------------- 254
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+V+P + P+++GN YT SL ASLL ++ L G R+++FSYGSG
Sbjct: 255 -----------QVKPGLVYPQRIGNTYTGSLLLGLASLL--DNAKLPGDRILLFSYGSGA 301
Query: 352 TATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVT 411
+ FS+ + +G + K + L+ R+ ++D + R +
Sbjct: 302 GSEAFSITVTDG-----IEERRKKLAPTVLLEQRNR---LSYIDYELYFKRRKKIRLG-- 351
Query: 412 SKDSSLLSPGTCYLTEVDSMFRRFY 436
KD+ G YL E+D FRR+
Sbjct: 352 -KDNEFYDSGDYYLEEIDDHFRRYR 375
|
Length = 377 |
| >gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 9e-82
Identities = 106/171 (61%), Positives = 129/171 (75%), Gaps = 14/171 (8%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+VGI+AL+IYFP V Q LE +DGVS GKYT+GLGQ M FC++ ED+ S+ LTVV
Sbjct: 1 DVGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQK 60
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
L+E+ +D IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA
Sbjct: 61 LMERNNLDYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAA 120
Query: 128 LFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAP 164
LFN +NW+ES+SWDGRY LVV D A AVAMLIGP+AP
Sbjct: 121 LFNALNWIESSSWDGRYALVVAGDIAIYAKGNARPTGGAGAVAMLIGPNAP 171
|
Length = 171 |
| >gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 2e-77
Identities = 118/371 (31%), Positives = 160/371 (43%), Gaps = 67/371 (18%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+VGI A+ Y P V E L GV GKYT G+GQ MA EDV +M++
Sbjct: 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMAGD--DEDVPTMAVEAARR 58
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
LE+ IDP IG L V +E+ IDK KS T+L ++ G T+ E D ACYGGTAA
Sbjct: 59 ALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELL---GLTNAEAFDLKQACYGGTAA 115
Query: 128 LFNCVNWVESASWDGRYGLVVCTDTA-----------------AVAMLIGPDAPIAFESK 170
L N VES W RY LVV +D A A AML+ + I +
Sbjct: 116 LQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTLGDGAAAMLVSRNPGILA-AG 172
Query: 171 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230
+ +H + + S YPV+DG + C L + + +
Sbjct: 173 IVSTHSTSDPGYDF----SPYPVMDGGYPKPCKL--------AYAIRLTAEPAGRA---- 216
Query: 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290
+ H K+V+K+ R ++ + +Q K
Sbjct: 217 -VFEAAHKLIAKVVRKALDRAGLSE--------------------DIDYFVPHQPNGK-K 254
Query: 291 ASQQVAKQLYD--LKVQPSTLI-PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSY 347
+ VAK+L K + I ++VGNMY AS+ ASLL E G RV++FSY
Sbjct: 255 ILEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASLL-ESGKLKAGDRVLLFSY 313
Query: 348 GSGLTATMFSL 358
GSG TA F L
Sbjct: 314 GSGFTAEAFVL 324
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324 |
| >gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 5e-44
Identities = 93/372 (25%), Positives = 153/372 (41%), Gaps = 65/372 (17%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + P + AL GV K+ +G+GQ MA ED+++M+ + +
Sbjct: 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128
L++ D +I + G+E+ ID+SK+ ++ + + ACYG TAAL
Sbjct: 61 LDRN--DKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFC--RSFELKQACYGATAAL 116
Query: 129 FNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKLRG 173
V + R LV+ +D A AVAML+ D + ++
Sbjct: 117 QMAKGHVALSP--DRKVLVIASDIAKYGLESPGEPTQGAGAVAMLVSADPKLLAINEDSV 174
Query: 174 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDY 233
+ DF++PN S +VDG+ S YL A ++ + + ++ S+ D
Sbjct: 175 LYTDDIMDFWRPN-YSTTALVDGQYSNEQYLNAFENAWNDYAKR------TGLSLADFAA 227
Query: 234 FVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 293
F FH P+ K+ K+ + L + ++ A
Sbjct: 228 FCFHVPFTKMGLKALRHI-------------------------LKKNYEDEDESVQNAYL 262
Query: 294 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTA 353
+ S + ++VGN+YT SLY ASLL G ++ +FSYGSG A
Sbjct: 263 E------------SIIYNREVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVA 310
Query: 354 TMFSLQLQEGHR 365
FS L G+R
Sbjct: 311 EFFSGTLVAGYR 322
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379 |
| >gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 82/327 (25%), Positives = 125/327 (38%), Gaps = 84/327 (25%)
Query: 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE 113
ED ++++ + L++ IDP +IG + VGSE+ K T + E G T D+
Sbjct: 49 EDTATIAVEAARNALKRAGIDPKEIGAVYVGSESHPYAVKPTATI---VAEALGATPDLT 105
Query: 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAML 158
D AC GTAAL + V+S +Y L + DTA A +
Sbjct: 106 AADLEFACKAGTAALQAAMGLVKSGM--IKYALAIGADTAQGAPGDALEYTAAAGGAAFI 163
Query: 159 IGPDAPIA-FESKLRGSHMSHAYDFYKPNLASEYPVVDGKL-SQTCYLMALDSCYKYFCQ 216
IG + IA E+ S+ + DF++ YP G+ + Y + S K
Sbjct: 164 IGKEEVIAEIEATY--SYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAK---G 217
Query: 217 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST 276
EKL G + S D DY VFH P K + L F KE++ P
Sbjct: 218 LMEKL-GLKPS--DYDYAVFHQPNGKFPLRVAKMLGFT-------------KEQVKP--- 258
Query: 277 LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHS 335
L+ +GN Y+ S A++L K
Sbjct: 259 -------------------------------GLLTPYIGNTYSGSALLGLAAVLDVAK-- 285
Query: 336 SLEGKRVIMFSYGSGLTATMFSLQLQE 362
G R+++ S+GSG + FS+ + +
Sbjct: 286 --PGDRILVVSFGSGAGSDAFSITVTD 310
|
Length = 347 |
| >gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-10
Identities = 76/325 (23%), Positives = 123/325 (37%), Gaps = 80/325 (24%)
Query: 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE 113
ED ++ + + L++ KIDP IG + VGSE+ ++K + E G T D+
Sbjct: 48 EDTATIGVEAARNALKRAKIDPKDIGAVYVGSES---HPYAVKPTATIVAEAIGATPDLT 104
Query: 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAML 158
D AC GTA + C+ V S +YGL + DTA A +
Sbjct: 105 AADLEFACKAGTAGIQACMGLVASGM--IKYGLAIGADTAQGAPGDALEYTAGAGGAAYI 162
Query: 159 IGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLS-QTCYLMALDSCYKYFCQK 217
IG +A + S+ + DF++ YP G+ + + Y + + K +K
Sbjct: 163 IGEKNTVA-YFEGTYSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGLMEK 220
Query: 218 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 277
+ D DY VFH P K F A+ + KE
Sbjct: 221 L------GLTPEDFDYAVFHQPNGK-------------FYLVAARMLGFPKE-------- 253
Query: 278 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSL 337
+V+P L P+ +GN Y+ + +++L
Sbjct: 254 -------------------------QVKPGLLTPR-IGNTYSGATPVGLSAVLDIAEP-- 285
Query: 338 EGKRVIMFSYGSGLTATMFSLQLQE 362
G R++ SYGSG + FS+ +Q+
Sbjct: 286 -GDRILAVSYGSGAGSDAFSIVVQD 309
|
This family of archaeal proteins shows considerable homology and identical active site residues to the bacterial hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase, modeled by TIGR01835) which is the second step in the mevalonate pathway of IPP biosynthesis. An enzyme from Pseudomonas fluorescens involved in the biosynthesis of the polyketide diacetyl-phloroglucinol is more closely related, but lacks the active site residues. In each of the genomes containing a member of this family there is no other recognized HMG-CoA synthase, although other elements of the mevalonate pathway are in evidence. The only archaeon currently sequenced which lacks a homolog in this pathway is Halobacterium, which _does_ contain a separate HMG-CoA synthase. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 345 |
| >gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 72/375 (19%), Positives = 107/375 (28%), Gaps = 93/375 (24%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
N IL + Y P V LE S G ++ E +++
Sbjct: 3 NAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARK 62
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
LE I P I + V + T S L+Q + G D AC G A
Sbjct: 63 ALEDAGISPDDIDLIIVATSTPDHLFPSTAC-LVQ--ARLGLGGAPAFDLQAACSGFLYA 119
Query: 128 LFNCVNWVESASWDGRYGLVVCTDT------------------AAVAMLIGPDAP----I 165
L + S + LVV +T A A+++ +
Sbjct: 120 LSVADGLIRSGG--YKNVLVVGAETLSRILDWTDRDTCVLFGDGAGAVVLEATEDDNGIL 177
Query: 166 AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK----- 220
+ GS Y + + G L + +K+ + K
Sbjct: 178 DTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREV-----FKFAVRAMPKAIEEV 232
Query: 221 LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDV 280
LE + D+D+FV H N ++ IAK+ P
Sbjct: 233 LEKAGLTPEDIDWFVPHQA-------------------NLRIIEAIAKKLGIP------- 266
Query: 281 ESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE---KHSSL 337
EK V K GN AS+ A L E K
Sbjct: 267 -------EEKVVVTVDK----------------YGNTSAASIPLALDEALREGRIK---- 299
Query: 338 EGKRVIMFSYGSGLT 352
G V++ ++G GLT
Sbjct: 300 PGDLVLLEAFGGGLT 314
|
Length = 323 |
| >gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 56/331 (16%), Positives = 95/331 (28%), Gaps = 87/331 (26%)
Query: 50 FCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN 109
E +++ LE ID I + V + T + + Q + G
Sbjct: 43 IADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLV-Q--ARLGA 99
Query: 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT----------------- 152
+ D AC G L + S + LVV +T
Sbjct: 100 KNAAAFDINAACSGFLYGLSTAAGLIRSGG--AKNVLVVGAETLSRILDWTDRSTAVLFG 157
Query: 153 -AAVAMLIGPDAP----IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMAL 207
A A+++ + GS S A P S P D + +M
Sbjct: 158 DGAGAVVLEATEEDPGILDSVL---GSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDG 214
Query: 208 DSCYKYFCQKFEK-----LEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASS 262
+K+ + + LE + D+D+FV H N
Sbjct: 215 REVFKFAVRLMPESIEEALEKAGLTPDDIDWFVPHQA-------------------NLRI 255
Query: 263 VDEIAKE-KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTAS 321
++ +AK L + +++ Y GN AS
Sbjct: 256 IEAVAKRLGLPEEKVVVNLDRY-------------------------------GNTSAAS 284
Query: 322 LYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
+ A + E +G V++ +G+GLT
Sbjct: 285 IPLALDEAIEEGKLK-KGDLVLLLGFGAGLT 314
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. Length = 320 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| KOG1393 | 462 | consensus Hydroxymethylglutaryl-CoA synthase [Lipi | 100.0 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 100.0 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 100.0 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 100.0 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 100.0 | |
| PF08540 | 282 | HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 100.0 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 100.0 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 100.0 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 100.0 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 100.0 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 100.0 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 100.0 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 100.0 | |
| PRK06840 | 339 | hypothetical protein; Validated | 100.0 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 100.0 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 100.0 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 100.0 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 100.0 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 100.0 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 100.0 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 100.0 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 100.0 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 100.0 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 100.0 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 99.97 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 99.97 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 99.96 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.91 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.84 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 99.81 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 99.64 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 99.63 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.58 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.42 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.42 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.3 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.26 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.26 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.23 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.22 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 99.22 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.22 | |
| PF02797 | 151 | Chal_sti_synt_C: Chalcone and stilbene synthases, | 99.19 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.19 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 99.18 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.17 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.17 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.16 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.14 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.14 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.12 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.12 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.12 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.11 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 99.09 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.07 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.06 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 99.06 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.05 | |
| PRK06158 | 384 | thiolase; Provisional | 99.01 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.0 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 98.98 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 98.97 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 98.95 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 98.93 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 98.91 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 98.91 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 98.88 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.88 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 98.86 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 98.84 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 98.83 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 98.83 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 98.83 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 98.83 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 98.82 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 98.82 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 98.8 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 98.8 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 98.79 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 98.78 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 98.78 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 98.76 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 98.74 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 98.72 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.7 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.68 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 98.67 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 98.65 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 98.59 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.58 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 98.56 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 98.53 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.53 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 98.52 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 98.51 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.51 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 98.44 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 98.44 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 98.42 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 98.38 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.36 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 98.36 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 98.35 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.34 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.32 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 98.28 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 98.25 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 98.25 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 98.2 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.17 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 98.16 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 98.15 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 98.11 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 97.97 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 97.95 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 97.75 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.37 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 97.13 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 97.1 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 97.07 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.81 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 96.3 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 95.5 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 95.47 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 94.99 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 94.8 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 93.95 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 92.56 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 92.41 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 92.29 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 91.68 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 91.65 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 91.61 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 91.23 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 91.08 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 91.02 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 90.44 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 90.09 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 89.78 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 89.74 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 89.73 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 89.69 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 89.51 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 89.48 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 89.46 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 88.87 | |
| PRK06840 | 339 | hypothetical protein; Validated | 88.75 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 87.45 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 87.38 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 87.26 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 87.13 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 87.08 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 86.88 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 86.8 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 86.65 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 86.63 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 86.18 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 85.57 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 84.82 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 84.54 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 84.49 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 83.65 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 83.09 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 82.96 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 82.94 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 82.66 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 82.65 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 82.17 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 81.54 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 81.26 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 80.51 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 80.15 |
| >KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-100 Score=736.38 Aligned_cols=432 Identities=58% Similarity=0.927 Sum_probs=402.1
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li 83 (453)
.+|.+|||.+|.+|+|.++|+|+||+++.|++.+||++|+||.+|+||.+.||+.+|+.++++++|++..|+++.|++|.
T Consensus 7 ~~p~dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery~i~~~~IGRLE 86 (462)
T KOG1393|consen 7 NWPKDVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERYNIDPDSIGRLE 86 (462)
T ss_pred cCccccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHhCCChhhcceEE
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc----------
Q 012909 84 VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---------- 153 (453)
Q Consensus 84 ~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~---------- 153 (453)
|||||.+|.+|++.+.|+++++.+|+.++.++|..|||+||++||.+|.+||+|+.||||.+||||+|++
T Consensus 87 VGTETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~~G~aRpT 166 (462)
T KOG1393|consen 87 VGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYAKGNARPT 166 (462)
T ss_pred ecceeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEecCCCCCCC
Confidence 9999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred ----ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhh--hcCCCC
Q 012909 154 ----AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL--EGRQFS 227 (453)
Q Consensus 154 ----AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~--~~~~~~ 227 (453)
||||||+|++|+.|+++++++||++.||||+|+..++||+|||++|++||+.|++.||..|+++.... ...+..
T Consensus 167 GGAgAVAmLIgPnApi~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~~~~~~~~~~~ 246 (462)
T KOG1393|consen 167 GGAGAVAMLIGPNAPIIFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIAAQWQKSGSDN 246 (462)
T ss_pred CCcceEEEEEcCCCceEecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHHHHhccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988643 122455
Q ss_pred ccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCC
Q 012909 228 MLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPS 307 (453)
Q Consensus 228 ~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s 307 (453)
+++||+++||.|++||++|+++||+||||..+++...+.. ...-.+..+++|+||+++|.+.++.++.|.+|+.||
T Consensus 247 l~~fdy~ifHsP~cKlvqKs~arl~ynDf~~~~~~~~~~~----~~~~~~~l~~s~~dr~~ek~~~~~s~~~~~~Kt~~s 322 (462)
T KOG1393|consen 247 LNSFDYIIFHSPYCKLVQKSLARLLYNDFLLNPSQLPESA----GLESTLKLDESYTDRDLEKAFIKISKPIFKKKTKPS 322 (462)
T ss_pred cccCCeEEEeCchhhhHHHHHHHhhhhhhhhccccccccc----cccccccccccccchHHHHHHHHHhHHHHHhhccce
Confidence 7899999999999999999999999999998777533211 112567889999999999999999999999999999
Q ss_pred cccccccCccccchHHHHHHHHHhhcC-cCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCc
Q 012909 308 TLIPKQVGNMYTASLYAAFASLLHEKH-SSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRH 386 (453)
Q Consensus 308 ~~~~~~~GN~~taSl~l~L~sll~~~~-~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~ 386 (453)
+.+++++|||||+|+|.+|+++|...+ ....|+||+|||||||+++++|++++..+.+| .-+.++..+++..||++|+
T Consensus 323 l~~~~~~GNmYTaSly~~l~sll~~~~~d~l~Gkrig~FSYGSGlAAs~fs~~v~~da~p-~~k~~~~~~d~~~rL~~R~ 401 (462)
T KOG1393|consen 323 LLAPRRNGNMYTASLYASLASLLSAVPADELAGKRIGMFSYGSGLAASMFSLRVTQDATP-LDKIIASLTDLKKRLDSRK 401 (462)
T ss_pred eEeeccCCccccHHHHHHHHHHHhccchhhhhccEEEEEeecCcchhheEEEEecCCCCc-hhhhhHhhhhHHHHhhhcc
Confidence 999999999999999999999998732 34799999999999999999999999885444 2334567789999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeeec
Q 012909 387 EFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440 (453)
Q Consensus 387 ~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 440 (453)
+++|++|++.+++||++|++.+|.|.+++++++||+|||++||++|||.|.+++
T Consensus 402 ~~tPe~F~e~melre~~~~~~n~~p~gs~~~Lf~gtyYL~~vd~~~RRsY~~~~ 455 (462)
T KOG1393|consen 402 CVTPEEFTEIMELREDTHHKVNFVPQGSIESLFPGTYYLKRVDELHRRSYTLKP 455 (462)
T ss_pred ccCHHHHHHHHHhhhhhcccccCCCCCchhhcCCCceehhhhhHHhhhccccCC
Confidence 999999999999999999999999999999999999999999999999999998
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-93 Score=732.99 Aligned_cols=444 Identities=81% Similarity=1.270 Sum_probs=403.0
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
+|++|||.++++|+|+++|++++|++.+|++++||++||++|++++++++||+++||++||+++|+++|++|++||+||+
T Consensus 1 ~~~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~agid~~~Idlliv 80 (459)
T PLN02577 1 MPKNVGILAMEVYFPPTCVQQEALEAHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKYNIDPKQIGRLEV 80 (459)
T ss_pred CCCccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHHhhccceeEeccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+|+++.+|++|++|++.++++|.+++++||+++||+|++.||++|.+||++|.+|+++||||++|++
T Consensus 81 aTeT~~d~~ps~A~~v~~ll~~LG~~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~~e~t~ 160 (459)
T PLN02577 81 GSETVIDKSKSIKTFLMQLFEESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGPARPTG 160 (459)
T ss_pred EcCCCCCCCCchHHHHHHHHHHhCCCCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCCCCCCC
Confidence 999999999999999997777666789999999999999999999999999999877899999999995
Q ss_pred ---ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q 012909 154 ---AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230 (453)
Q Consensus 154 ---AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d 230 (453)
|+||||+++|++.++....++++.+++|||||.+.++||.|||++|+.+|++++..+++.|+++.+...+.+++++|
T Consensus 161 GdGA~A~lv~~~~~~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~~g~~~~d 240 (459)
T PLN02577 161 GAGAVAMLVGPNAPIVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEGKQFSISD 240 (459)
T ss_pred CcceEEEEEccCCCceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Confidence 99999999888777776788999999999999977788999999999999999999999999987544445788999
Q ss_pred ccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccc
Q 012909 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 310 (453)
Q Consensus 231 ~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 310 (453)
||++||||||+||++|++++|+++||.+....+.+..++.+.....++.+++|.||+++|.+...+++.|.+|++||+.+
T Consensus 241 ~d~~vfHqP~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~~~ 320 (459)
T PLN02577 241 ADYFVFHAPYNKLVQKSFARLVYNDFQRNASSVDEDAKEKLAPFAGLSSDESYQNRDLEKVSQQVAKPLYDAKVQPTTLI 320 (459)
T ss_pred cCEEEecCCccchhHHHHHHHhhhhhhhccccccchhhhccccccccchhhccccchHHHHHHHhhHHHHHHhhccHhHH
Confidence 99999999999999999999999998854321112224445556678889999999999999999999999999999999
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCH
Q 012909 311 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 390 (453)
Q Consensus 311 ~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 390 (453)
++++|||||||+|++|+++|++....++|+||+|||||||+++++|+++++++..+..+++++.+.+++++|++|++||+
T Consensus 321 ~~~vGN~YTaSlyl~L~SlL~~~~~~~~G~rIg~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~L~~R~~ls~ 400 (459)
T PLN02577 321 PKQVGNMYTASLYAALASLVHNKHSELAGKRILMFSYGSGLTATMFSLRLHEGQHPFSLSNIAKVMDVSEKLKSRHEVSP 400 (459)
T ss_pred HHhcCcccchHHHHHHHHHHhhccccCCCCEEEEEeecCCccceeEEEEEeCCCccccHHHHHHhccHHHHHhCCccCCH
Confidence 99999999999999999999874335699999999999999999999999995444445788888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeeecCcccccccccC
Q 012909 391 EKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNAATCENG 451 (453)
Q Consensus 391 ~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~~~~~~~~~~~~ 451 (453)
+||+++++.|+..|+..+|.|..+.+.++||+|||++|+++|||+|++++ -+-.+.||
T Consensus 401 ~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~~---~~~~~~~~ 458 (459)
T PLN02577 401 EKFVETLKLMEHRYGAKDFVPSKDVSLLAPGTYYLTEVDSLYRRFYDRKA---LNGSIANG 458 (459)
T ss_pred HHHHHHHHHHHhhccCcCCCcCCcccccCCCceEEeEEcCCcEEEEEecC---CCCccCCC
Confidence 99999999999999999999999888889999999999998999999987 55666666
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-91 Score=716.78 Aligned_cols=432 Identities=61% Similarity=0.975 Sum_probs=393.2
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
+|||.+|++|+|+++|++++|++.+|++++||++||++++|+|++++||+++||++||+++|++++++|++||+||++|+
T Consensus 1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a~id~~~Id~Liv~Te 80 (454)
T TIGR01833 1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKLMERYNIDYNQIGRLEVGTE 80 (454)
T ss_pred CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHheechhheecccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
|+++.+|+++++|++.||++|.++|++||+++||+|++.||++|.+||+++.+|+++||||++|++
T Consensus 81 S~~d~sps~a~~v~~lL~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~~~~~~~t~GaG 160 (454)
T TIGR01833 81 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYAKGNARPTGGAG 160 (454)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccccCCCeeeccccc
Confidence 999999999999999998778899999999999999999999999999999878899999999996
Q ss_pred ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhh-h----cCCCCc
Q 012909 154 AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-E----GRQFSM 228 (453)
Q Consensus 154 AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~-~----~~~~~~ 228 (453)
|+||||+++|+++++++..++|+.+++|||||...+++|.|||++|+.||+++++.||..|.++.... . +.+..+
T Consensus 161 AvAmLv~~~~~~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~~~a~~~~~~~~~~~~ 240 (454)
T TIGR01833 161 AVAMLIGPNAPIVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFTL 240 (454)
T ss_pred eEEEEeccCccceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCH
Confidence 99999999988888877788999999999999876679999999999999999999999998876421 1 124778
Q ss_pred cCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCc
Q 012909 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPST 308 (453)
Q Consensus 229 ~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~ 308 (453)
+|||++|||+||+||++|+|++++++|+...+..+.+..|+.+.+...++.+++|+||++++.|.+++++.|.+|++||+
T Consensus 241 ~dfd~~~fH~P~~km~~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~ps~ 320 (454)
T TIGR01833 241 NDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRDLEKAFMKASKELFDKKTKPSL 320 (454)
T ss_pred hHcCEEeccCCcccHHHHHHHHHHHhhhhhccccccchhhcccchhhccccccccchhhHHHHHHhhhhhhHHHhhcchh
Confidence 99999999999999999999999999987654322223356677778899999999999999999999999999999999
Q ss_pred ccccccCccccchHHHHHHHHHhhcCc-CCCCCEEEEEEecchhhheeeEEEEecCCCCC-c-hhhhhhcCChHHHhccC
Q 012909 309 LIPKQVGNMYTASLYAAFASLLHEKHS-SLEGKRVIMFSYGSGLTATMFSLQLQEGHRPF-S-LSNIVKVMDVPGKLKLR 385 (453)
Q Consensus 309 ~~~~~~GN~~taSl~l~L~sll~~~~~-~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~L~~r 385 (453)
.+++++|||||||+|++|+++|++... .+.|+||+|||||||+++++|+++++++..++ . ++.+....++.++|++|
T Consensus 321 ~~~~~vGN~YtaSlyl~L~Sll~~~~~~~~~g~ri~~fSYGSG~~se~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L~~R 400 (454)
T TIGR01833 321 LVPNQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMFSYGSGLAASMFSLRVSQDASPGSALDKLIASLSDLKNKLDSR 400 (454)
T ss_pred HHHHhcCchhhhHHHHHHHHHHhhCCccccCCCEEEEEeccCCcceeeEEEEEeCCccccchHHHHHHHHhhHHHHHhcC
Confidence 999999999999999999999987432 56899999999999999999999999942221 1 44555566899999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeee
Q 012909 386 HEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439 (453)
Q Consensus 386 ~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 439 (453)
+++|++||+++++.|++.|+..+|.|.++.+.++||+|||++|+++|||+|+++
T Consensus 401 ~~~s~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~R~Y~~~ 454 (454)
T TIGR01833 401 HCVAPEEFEETMELREQAHHKKNFTPQGSIDLLFPGTWYLERVDSKHRRSYARK 454 (454)
T ss_pred ccCCHHHHHHHHHhhhhhcccccccccccccccCCCcEEEeeecCCceEEeccC
Confidence 999999999999999999999999999998889999999999999999999975
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-77 Score=588.54 Aligned_cols=361 Identities=34% Similarity=0.515 Sum_probs=335.0
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t 86 (453)
|+|||.++++|+|.++|+++||++.+|++++|++.|+|+.+++|++.+||++|||++||+++|+++++||++|++|+|||
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT 80 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS 80 (377)
T ss_pred CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhccCCCHHHCceEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------------
Q 012909 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------- 153 (453)
Q Consensus 87 ~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------- 153 (453)
||++|.+|+++++|+++||+ +++++++|+++||++|++||++|.+||.+|.+ +++|||++|++
T Consensus 81 ES~~d~~K~~at~v~~~lg~--~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~~~~E~t~G 156 (377)
T COG3425 81 ESGPDAVKPTATIVAEALGL--NPSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPGDALEYTAG 156 (377)
T ss_pred CCCcccccchHHHHHHHhCC--CCceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCCcccCccCC
Confidence 99999999999999999999 89999999999999999999999999999977 89999999998
Q ss_pred --ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCc
Q 012909 154 --AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231 (453)
Q Consensus 154 --AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~ 231 (453)
|+||||+++++++.+....++|+.+.+|||||.+. .||.+||++|..+|+.++.++++.|.++.+ ++++||
T Consensus 157 AGavA~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~-~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~g------ls~~df 229 (377)
T COG3425 157 AGAVAFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQ-PYPYVDGRFSEPAYFKHVENAAKGYMEKTG------LSPDDF 229 (377)
T ss_pred CceEEEEEccCCCeEEEecCceEEecCCCcccccCCC-cccccCceecHHHHHHHHHHHHHHHHHHhC------CChhhh
Confidence 99999999977777777889999999999999954 899999999999999999999999999885 889999
Q ss_pred cEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccc
Q 012909 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 311 (453)
Q Consensus 232 d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 311 (453)
|++|||+||+||++|+++.++++ .+++.|++.++
T Consensus 230 dy~vfH~P~~k~~~ka~k~l~~~----------------------------------------------~e~v~~~l~~~ 263 (377)
T COG3425 230 DYIVFHQPNGKFPKKAAKSLGFK----------------------------------------------EEQVKPGLVYP 263 (377)
T ss_pred CeEEecCCCCchHHHHHHHhCcc----------------------------------------------HhhcCccchhh
Confidence 99999999999999998776521 25789999999
Q ss_pred cccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCHH
Q 012909 312 KQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPE 391 (453)
Q Consensus 312 ~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~ 391 (453)
+++||+||||+|++|+++|++. . ++|||||++|||||+.+++|++++++ ++++++++..+..+|.+|+++|+.
T Consensus 264 ~~vGN~YtgS~~L~Las~L~~a-~-~~G~rIl~~SYGSGa~s~~fs~~v~~-----~~~~~~~~~~~~~~l~~R~~ls~~ 336 (377)
T COG3425 264 QRIGNTYTGSLLLGLASLLDNA-K-LPGDRILLFSYGSGAGSEAFSITVTD-----GIEERRKKLAPTVLLEQRNRLSYI 336 (377)
T ss_pred hhcCcccchhHHHHHHHHHhhc-C-CCCCEEEEEeeCCCcceeEEEEEecc-----cHHHHhhhcchHHHHHhhccCCHH
Confidence 9999999999999999999995 3 79999999999999999999999999 899999899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeee
Q 012909 392 KFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAK 438 (453)
Q Consensus 392 ~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~ 438 (453)
+|+.+++.|.+.....+..+ ...+.|||..|++ +.|.|.+
T Consensus 337 dYe~~~~~~~~~~~~~~~~~------~~~~~~~l~~i~~-~~R~y~~ 376 (377)
T COG3425 337 DYELYFKRRKKIRLGKDNEF------YDSGDYYLEEIDD-HFRRYRY 376 (377)
T ss_pred HHHHHHhhhccccccccccc------ccCCceEEeeccC-CceeEee
Confidence 99999998766555444444 4567899999999 6666754
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=538.86 Aligned_cols=363 Identities=28% Similarity=0.426 Sum_probs=319.2
Q ss_pred eEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEccc
Q 012909 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSET 88 (453)
Q Consensus 9 vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s 88 (453)
|||.+|++|+|+++|++++|++.+|++++||..|+|++++++++++||+++|+++|++++|+++ +|++||+|+++|+|
T Consensus 1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a--~~~~Id~li~~t~s 78 (379)
T TIGR01835 1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN--DKQKIDMVIFGTES 78 (379)
T ss_pred CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC--CHhhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred CCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc---------------
Q 012909 89 VIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--------------- 153 (453)
Q Consensus 89 ~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--------------- 153 (453)
+++.+|+.+.+|++.||+ +++++++|++++|+|++.||++|.+||++|.+ ++||||++|++
T Consensus 79 ~~~~~~s~a~~v~~~Lgl--~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~--~~aLVv~~D~a~~~~~~~~~~~~GdG 154 (379)
T TIGR01835 79 GIDQSKAAAVYVHGLLGL--QPFCRSFELKQACYGATAALQMAKGHVALSPD--RKVLVIASDIAKYGLESPGEPTQGAG 154 (379)
T ss_pred CCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCCC--CeEEEEEeehhhcccCCCCCccccCc
Confidence 999999999999999999 56799999999999999999999999999954 99999999996
Q ss_pred ceeeeecCCCCc-eeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCcc
Q 012909 154 AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232 (453)
Q Consensus 154 AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d 232 (453)
|+||||++++++ .++. ....++.+.+|||+|.+ ..+|.++|+++..+|++.+..+++.++++. +++++|||
T Consensus 155 A~A~Ll~~~~~i~~~~~-~~~~~t~~~~df~~p~~-~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~------g~~~~did 226 (379)
T TIGR01835 155 AVAMLVSADPKLLAINE-DSVLYTDDIMDFWRPNY-STTALVDGQYSNEQYLNAFENAWNDYAKRT------GLSLADFA 226 (379)
T ss_pred cEEEEEecCCCeeEEec-cceeeecCCCCccCCCC-CCceeECcHHHHHHHHHHHHHHHHHHHHHh------CCCHHHcC
Confidence 999999999764 3443 24477888899999984 567999999999999999999999998876 48899999
Q ss_pred EEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccccc
Q 012909 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPK 312 (453)
Q Consensus 233 ~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~ 312 (453)
+++|||||++|+.|++++++ +.++++.+ +.+.+.+++|+.+.+
T Consensus 227 ~~i~H~p~~~~~~k~~~~~l--------------------~~~~~~~~-----------------~~~~~~~~~s~~~~~ 269 (379)
T TIGR01835 227 AFCFHVPFTKMGLKALRHIL--------------------KKNYEDED-----------------ESVQNAYLESIIYNR 269 (379)
T ss_pred EEEECCCCCcHHHHHHHHHH--------------------hhcccccH-----------------HHHHHHhhhhhhhhh
Confidence 99999999999999887654 12233321 223344567888889
Q ss_pred ccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCHHH
Q 012909 313 QVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEK 392 (453)
Q Consensus 313 ~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~~ 392 (453)
++|||||||+|++|++++++.+++++||+|+|+|||||+++++|++++.+ ++++...+.++.++|++|+.+++++
T Consensus 270 ~~GN~~sas~~l~L~~~l~~~~~~~~Gd~ill~s~GsG~~ae~~~~~~~~-----~~~~~~~~~~~~~~l~~r~~~~~~~ 344 (379)
T TIGR01835 270 EVGNLYTGSLYLGLASLLENAFEDTTGDKIGLFSYGSGAVAEFFSGTLVA-----GYRDHLKKERHLALLKNRTNLSYAE 344 (379)
T ss_pred hcCchHhHHHHHHHHHHHHhcccCCCCCEEEEEEecCCcceeeEEEEEcc-----cHHHHHhcccHHHHHhCCccCCHHH
Confidence 99999999999999999997326789999999999999999999999998 8988888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEe
Q 012909 393 FVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFY 436 (453)
Q Consensus 393 y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y 436 (453)
|+++++.+.. +..+.....+|+|||++|++ |+|+|
T Consensus 345 y~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~-~~r~y 379 (379)
T TIGR01835 345 YEALFEETLP--------TDGDQPGEDRGFFRLAGIND-HKRIY 379 (379)
T ss_pred HHHHHHhccC--------CCCCcccCCCCcEEEEEecc-cEeeC
Confidence 9999987543 11113345688999999999 78888
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=476.06 Aligned_cols=270 Identities=55% Similarity=0.866 Sum_probs=225.3
Q ss_pred ceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhh---cCCCCccCccEEEecCcch
Q 012909 165 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE---GRQFSMLDVDYFVFHSPYN 241 (453)
Q Consensus 165 l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~---~~~~~~~d~d~~v~H~p~~ 241 (453)
|++|+++.++||.|+||||||+..++||+|||++|++||+++++.||+.|+++..+.. ..+..+++||+++||.||+
T Consensus 1 iv~d~~~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~~~~~~~~~~~~l~~~d~~~fH~Py~ 80 (282)
T PF08540_consen 1 IVFDRGLRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVEKLANRGNKGTSLDDFDYVCFHSPYC 80 (282)
T ss_dssp EEEETTEEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST--GGG-SEEEE--SSH
T ss_pred CcccCCCceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccccceEEEecCch
Confidence 4688889999999999999999889999999999999999999999999999975321 3468889999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCch-hhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccc
Q 012909 242 KLVQKSFARLFFNDFLRNASSV-DEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTA 320 (453)
Q Consensus 242 km~~ka~~~l~~~~~~~~~~~~-~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ta 320 (453)
||++|++++++++|+...+..+ .+...+.+.+..+++.+++|+||+++|.+.+.+++.|++|++||+.+++++||||||
T Consensus 81 klv~Ka~~rl~~~D~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~dr~lek~~~~~s~~~~~~kv~psl~~~~~vGN~YTa 160 (282)
T PF08540_consen 81 KLVQKAFARLLYNDFLRNPSSEEFEEIDAELAPFRDLPLEESYFDRDLEKAFMKASKEDFERKVEPSLLYSRQVGNMYTA 160 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHCCHGGGTT--GGGHCTHHHHHHHHHHHHHHHHHHHCHHHTHHHHHHB--GGG
T ss_pred HHHHHHHHHHHHhhhhhccccccccccchhhhhhccCCcccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCceehH
Confidence 9999999999999998766652 223445566677889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh-hcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhh-------hhhcCChHHHhccCccCCHHH
Q 012909 321 SLYAAFASLLH-EKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSN-------IVKVMDVPGKLKLRHEFPPEK 392 (453)
Q Consensus 321 Sl~l~L~sll~-~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~L~~r~~~~~~~ 392 (453)
|+|++|+|+|. .....+.|+||+|||||||+++++|++++++ ++++ +.+.+++.+||++|+++|++|
T Consensus 161 Sly~~L~SlL~~~~~~~l~GkrI~~FSYGSG~~s~~fs~~v~~-----~~~~~~~~~~~i~~~~dl~~rL~~R~~~s~ee 235 (282)
T PF08540_consen 161 SLYLGLASLLSSAEADDLAGKRIGMFSYGSGLASEFFSGRVQP-----GAEEGSLLNRLIAKALDLKERLDARTKLSPEE 235 (282)
T ss_dssp HHHHHHHHHHHHHHSCHHTT-EEEEEEEETTTEEEEEEEEE-T-----TGGGTSHHHHHHHHHHCHHHHHHTSEEE-HHH
T ss_pred HHHHHHHHHhhccCccccCCCEEEEEEecCCcceeEEEEEEeC-----CccccchhhhHHHhhhhHHHHHhcCcCCCHHH
Confidence 99999999993 2234569999999999999999999999999 5555 667789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeee
Q 012909 393 FVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439 (453)
Q Consensus 393 y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 439 (453)
|+++++.||+.|+..+|.|.++.+.++||+|||++||++|||+|++|
T Consensus 236 ye~~~~~re~~~~~~~y~p~~~~~~l~~GtyyL~~VD~~~RR~Y~rk 282 (282)
T PF08540_consen 236 YEEILKLREKTYGAKDYTPSGDISSLFPGTYYLTRVDDKHRRTYARK 282 (282)
T ss_dssp HHHHHHHHHHHTTHTSBETTSTGGGSGTTSEEEEEEETTSEEEEEE-
T ss_pred HHHHHHhhhhhccccCCCCCCcccccCCCCEEEcccCCcceEEeccC
Confidence 99999999999999999999999999999999999999999999986
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A .... |
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=389.78 Aligned_cols=322 Identities=25% Similarity=0.392 Sum_probs=259.5
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
+++|.+++.|+|+++|+++++++.++.+++++..++|.+++++++++|++.+|+++|+++||+++|++|++||.|+++|+
T Consensus 1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~agl~~~dID~li~~s~ 80 (345)
T TIGR00748 1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRAKIDPKDIGAVYVGSE 80 (345)
T ss_pred CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec
Confidence 47999999999999999999999999999999666666666677899999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++++..|+.+..+++.||+ ..++.++|+.++|+|++.||++|..+|++|.. ++||||++|++
T Consensus 81 ~~~~~~p~~a~~v~~~LGl--~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~~~~~~~~~~GD 156 (345)
T TIGR00748 81 SHPYAVKPTATIVAEAIGA--TPDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGAPGDALEYTAGA 156 (345)
T ss_pred CCCccccchHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccCCCccCcccCCC
Confidence 9988889999999999998 55789999999999999999999999999966 99999999975
Q ss_pred -ceeeeecCCCCc-eeccCceeeeccccccccccCCCCCCceecCcchH-HHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q 012909 154 -AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230 (453)
Q Consensus 154 -AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~-~~y~~al~~~~~~~~~~~~~~~~~~~~~~d 230 (453)
|+|+||++.+.. .+.. . ..+..+..|+|++. +..++...+++.. ..+.+.+..+.+.++++ .+++++|
T Consensus 157 GAaA~vl~~~~~~~~~~~-~-~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~------~gl~~~d 227 (345)
T TIGR00748 157 GGAAYIIGEKNTVAYFEG-T-YSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFHHVVTAAKGLMEK------LGLTPED 227 (345)
T ss_pred ceEEEEEccCCcceEeec-c-cceecccccccccC-CCcCCCcCCeecChHHHHHHHHHHHHHHHHH------cCCCHHH
Confidence 789999977542 2221 1 12223345777764 2233444443322 12333333444555444 4699999
Q ss_pred ccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccc
Q 012909 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 310 (453)
Q Consensus 231 ~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 310 (453)
||+|++|||+.+|++.. .+.+|+++++ . ..++ .
T Consensus 228 id~~i~Hq~~~~~~~~~------------------------~~~lgl~~ek---------~-------------~~~~-~ 260 (345)
T TIGR00748 228 FDYAVFHQPNGKFYLVA------------------------ARMLGFPKEQ---------V-------------KPGL-L 260 (345)
T ss_pred cCEEEeCCCChHHHHHH------------------------HHHcCCCHHH---------e-------------eccc-c
Confidence 99999999999998773 3456777762 2 1222 1
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhh-cCChHHHhccCccCC
Q 012909 311 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVK-VMDVPGKLKLRHEFP 389 (453)
Q Consensus 311 ~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~L~~r~~~~ 389 (453)
.+++|||+|||+|++|.++++. +++||+|+|++||+|++|++++++|++ .++..++ +-++.+.|++|+.++
T Consensus 261 ~~~~GNt~sAsipl~L~~~~~~---~~~Gd~vll~~~G~G~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 332 (345)
T TIGR00748 261 TPRIGNTYSGATPVGLSAVLDI---AEPGDRILAVSYGSGAGSDAFSIVVQD-----AIEEKRDLAPKVADYIKRKKYID 332 (345)
T ss_pred ccccCchhhhHHHHHHHHHHHh---cCCCCEEEEEEecCCcceeEEEEEEch-----hHHHHhhhhhhHHHHHhcCccCC
Confidence 3799999999999999999864 689999999999999999999999998 7887763 237999999999999
Q ss_pred HHHHHHHH
Q 012909 390 PEKFVDIM 397 (453)
Q Consensus 390 ~~~y~~~~ 397 (453)
+++|+++.
T Consensus 333 ~~~y~~~~ 340 (345)
T TIGR00748 333 YALYAKFR 340 (345)
T ss_pred HHHHHHHh
Confidence 99999875
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=390.96 Aligned_cols=323 Identities=25% Similarity=0.389 Sum_probs=260.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t 86 (453)
|+|+|.+++.|+|+++|+++++++.++.+++|+...+|.+++.+++++++..+|+++|++++|+++|++|++||.|+++|
T Consensus 1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~s 80 (347)
T PRK04262 1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRAGIDPKEIGAVYVGS 80 (347)
T ss_pred CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEe
Confidence 67999999999999999999999999999998854444444456688999999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------------
Q 012909 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------- 153 (453)
Q Consensus 87 ~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------- 153 (453)
+++++..|+.+.+|++.||+ +++++++++.++|+|++.||+.|..+|++|.. ++||||++|+.
T Consensus 81 ~~~~~~~p~~a~~v~~~Lgl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~~~~~~~~~~~~G 156 (347)
T PRK04262 81 ESHPYAVKPTATIVAEALGA--TPDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQGAPGDALEYTAA 156 (347)
T ss_pred cCCCcccccHHHHHHHHcCC--CCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeeccCCCCCCCCcCC
Confidence 99988889999999999998 55688999999999999999999999999954 99999999974
Q ss_pred --ceeeeecCCCCc-eeccCceeeeccccccccccCCCCCCceecCcchH-HHHHHHHHHHHHHHHHHHhhhhcCCCCcc
Q 012909 154 --AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ-TCYLMALDSCYKYFCQKFEKLEGRQFSML 229 (453)
Q Consensus 154 --AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~-~~y~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (453)
|+|+||++++.. .+.. . .++..+..|+|++. +..++.....++. ..|.+.+..+++.++++. +++.+
T Consensus 157 DGA~A~ll~~~~~~~~i~~-~-~~~~~d~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~------gl~~~ 227 (347)
T PRK04262 157 AGGAAFIIGKEEVIAEIEA-T-YSYTTDTPDFWRRE-GEPYPRHGGRFTGEPAYFKHIISAAKGLMEKL------GLKPS 227 (347)
T ss_pred CCcEEEEEecCcccceeec-c-ccccccchhhcCCC-CCcCCCcCceecchHHHHHHHHHHHHHHHHHh------CcCHH
Confidence 889999876532 1211 1 12334556788754 2223332233322 146666666776666655 58899
Q ss_pred CccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcc
Q 012909 230 DVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTL 309 (453)
Q Consensus 230 d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~ 309 (453)
|||+|+|||++.+|++. +.+.+++|.++ .+ .++
T Consensus 228 dId~~v~Hq~n~~~~~~------------------------~~~~Lgl~~ek---------~~-------------~~~- 260 (347)
T PRK04262 228 DYDYAVFHQPNGKFPLR------------------------VAKMLGFTKEQ---------VK-------------PGL- 260 (347)
T ss_pred HhceeecCCCchHHHHH------------------------HHHHcCCCHHH---------hh-------------ccc-
Confidence 99999999999999987 34456788762 22 222
Q ss_pred cccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhh-hcCChHHHhccCccC
Q 012909 310 IPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIV-KVMDVPGKLKLRHEF 388 (453)
Q Consensus 310 ~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~L~~r~~~ 388 (453)
+.+++|||+|||+|++|.++++. +++||+|+|++||+|+++++++++|++ .+++.+ ...++.+.|++|+.+
T Consensus 261 ~~~~~GNt~sAsi~~~L~~~~~~---~~~Gd~vll~~~G~G~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 332 (347)
T PRK04262 261 LTPYIGNTYSGSALLGLAAVLDV---AKPGDRILVVSFGSGAGSDAFSITVTD-----AIEEKRDLAPTVEDYLERKKYI 332 (347)
T ss_pred hhhhhCChHHHHHHHHHHHHHHh---CCCCCEEEEEecCCCcceeeEEEEech-----hHHHhhhccccHHHHHhCCccC
Confidence 23899999999999999999974 579999999999999999999999998 677664 234799999999999
Q ss_pred CHHHHHHHH
Q 012909 389 PPEKFVDIM 397 (453)
Q Consensus 389 ~~~~y~~~~ 397 (453)
++++|+++.
T Consensus 333 ~~~~y~~~~ 341 (347)
T PRK04262 333 DYAVYAKYR 341 (347)
T ss_pred CHHHHHHHh
Confidence 999999874
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=376.68 Aligned_cols=289 Identities=22% Similarity=0.254 Sum_probs=242.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.++|.|+|++.++++++++..+.+.+|+ ++||.+|+++ .++|...+|+++||++||+++|++|+|||+||+
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a--~~~e~~s~la~~Aa~~AL~~Agi~~~dIDlII~ 79 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIA--ADDETTSDLAVEAARKALEDAGISPDDIDLIIV 79 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeec--CCCccHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 678999999999999999999999999999999 4788888765 779999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|.||++..|++|+.||+.||+ .++.+||+..+|+|+++||.+|..+|++|.+ |+||||++|++
T Consensus 80 aT~tpd~~~Ps~A~~vq~~LG~---~~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~dR~t 154 (323)
T COG0332 80 ATSTPDHLFPSTACLVQARLGL---GGAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTDRDT 154 (323)
T ss_pred EcCCcccCCChHHHHHHHHhCC---CCcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhhccc
Confidence 9999999999999999999998 6699999999999999999999999999987 99999999997
Q ss_pred -------ceeeeecCCC-Cc---eeccCceeeeccccccccccCCC---------CCCceecCcchHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDA-PI---AFESKLRGSHMSHAYDFYKPNLA---------SEYPVVDGKLSQTCYLMALDSCYKY 213 (453)
Q Consensus 154 -------AvA~Ll~~~~-~l---~~~~~~~~~~~~~~~df~~p~~~---------~~~~~vdG~~s~~~y~~al~~~~~~ 213 (453)
|+|+||++.+ .. .+..+..+.+.... +.|... ..+..++|+.. |..++..+.+.
T Consensus 155 ~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l---~~~~~~~~~~~~~~~~~~~~m~Gr~v---fk~av~~~~~~ 228 (323)
T COG0332 155 CVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLL---YLPGGGSATPKEESGGGLLVMDGREV---FKFAVRAMPKA 228 (323)
T ss_pred eEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCee---eccCCCCccccccccccceeeccHHH---HHHHHHHHHHH
Confidence 9999998885 21 11111122221111 112110 12456788877 66666666655
Q ss_pred HHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHH
Q 012909 214 FCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~ 293 (453)
+.+.+ ++++++.+|||||++||+|.+|.++ +.+.+++|++ |++.
T Consensus 229 ~~~~L---~~~~l~~~dId~~vpHQan~ri~~~------------------------i~~~l~~~~~---------k~~~ 272 (323)
T COG0332 229 IEEVL---EKAGLTPEDIDWFVPHQANLRIIEA------------------------IAKKLGIPEE---------KVVV 272 (323)
T ss_pred HHHHH---HHcCCCHHHCCEEccccccHHHHHH------------------------HHHHcCCCHH---------HHhh
Confidence 55555 4567999999999999999999887 4455677776 6666
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 294 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 294 ~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
++ .++||+++||+|++|.+++++ +++++||+|+|.+||+|++|++..++|.
T Consensus 273 ~~----------------~~yGNtsaAsiplaL~~~~~~-g~ik~Gd~ill~~fG~Gltwg~~~~r~~ 323 (323)
T COG0332 273 TV----------------DKYGNTSAASIPLALDEALRE-GRIKPGDLVLLEAFGGGLTWGAALVRWG 323 (323)
T ss_pred HH----------------HHhcccccchHHHHHHHHhhh-CCCCCCCEEEEEeecCcceeeeEEEEeC
Confidence 66 899999999999999999999 8999999999999999999999999984
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=354.12 Aligned_cols=289 Identities=20% Similarity=0.257 Sum_probs=229.4
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
+++|.+++.|+|+++|+++++++..|.+++++...+|.+++.++.++|++.+|+++||++||+++|++|++||+||++|+
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~ag~~~~~Id~li~~t~ 82 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDAGIERSDIALTLLATS 82 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEECC
Confidence 58999999999999999999999999988888544555555566889999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++++..|+.+.+|+++||+ +++.+||+.++|+|++.||++|.++++++ . ++||||++|.+
T Consensus 83 ~~d~~~p~~a~~v~~~Lg~---~~~~~~di~~~C~g~~~aL~~A~~~l~~~--~-~~aLVv~~d~~s~~~~~~~~~~~~l 156 (326)
T PRK05963 83 TPDHLLPPSAPLLAHRLGL---QNSGAIDLAGACAGFLYALVLADGFVRAQ--G-KPVLVVAANILSRRINMAERASAVL 156 (326)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCceeeccchhhHHHHHHHHHHHHHHcC--C-CeEEEEEechhhccCCccccCceEE
Confidence 9988899999999999998 56899999999999999999999999987 3 89999999975
Q ss_pred ----ceeeeecCCCCceeccCceeeecc---ccccccc-cCCCCC-------------CceecCcchHHHHHHHHHHHHH
Q 012909 154 ----AVAMLIGPDAPIAFESKLRGSHMS---HAYDFYK-PNLASE-------------YPVVDGKLSQTCYLMALDSCYK 212 (453)
Q Consensus 154 ----AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df~~-p~~~~~-------------~~~vdG~~s~~~y~~al~~~~~ 212 (453)
|+|+||++++.- ..++..+... +.+|+++ |.++.. ....+|+.....+.+.+.++++
T Consensus 157 fGDgA~A~ll~~~~~~--~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (326)
T PRK05963 157 FADAAGAVVLAPSAKA--NSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQ 234 (326)
T ss_pred EeecceEEEEEecCCC--CCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHH
Confidence 889999876420 0011111111 1233322 222111 1123666665555555555555
Q ss_pred HHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHH
Q 012909 213 YFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~ 292 (453)
.++++ +|++++|||+|+|||++.+++++ +.+.++++++ |..
T Consensus 235 ~~L~~------~gl~~~did~~~~h~~~~~~~~~------------------------~~~~l~l~~~---------k~~ 275 (326)
T PRK05963 235 NVLAS------AAMTPQDIDRFFPHQANARIVDK------------------------VCETIGIPRA---------KAA 275 (326)
T ss_pred HHHHH------cCCCHHHCCEEEeCCCCHHHHHH------------------------HHHHcCCCHH---------Hhh
Confidence 55544 46999999999999999999877 3345688876 333
Q ss_pred HHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 293 ~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
.++ +++||++++|+|++|..++++ +++++||+|+|++||+|+++++.+++|
T Consensus 276 ~~l----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~~~~~~ll~~ 326 (326)
T PRK05963 276 STL----------------ETYGNSSAATIPLSLSLANLE-QPLREGERLLFAAAGAGMTGGAVVMRV 326 (326)
T ss_pred hhH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEehhhhheeeEEeC
Confidence 333 799999999999999999987 778899999999999999999999886
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=316.96 Aligned_cols=160 Identities=54% Similarity=0.890 Sum_probs=142.4
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
||++|||++|++|+|+++|++++|++++|++++||++|+||.+|+|++++||+++||++|++++|++.+++|++|++|+|
T Consensus 1 ~p~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~~id~~~Ig~l~v 80 (174)
T PF01154_consen 1 RPQNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRYNIDPDDIGRLIV 80 (174)
T ss_dssp --SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHHT-HHHHEEEEEE
T ss_pred CCccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHcCCCHHHccEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
||||++|.+|+++++||++||++|+++|+++|+++||+|||+||++|.+||+++.|||+++|||++|++
T Consensus 81 gTES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g~~e~Tq 160 (174)
T PF01154_consen 81 GTESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLGSAEPTQ 160 (174)
T ss_dssp E-SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STTTTGGG-
T ss_pred eccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCCCccccc
Confidence 999999999999999999999988889999999999999999999999999999999999999999998
Q ss_pred ---ceeeeecCCCC
Q 012909 154 ---AVAMLIGPDAP 164 (453)
Q Consensus 154 ---AvA~Ll~~~~~ 164 (453)
|+||||++++|
T Consensus 161 GAGAVAmLi~~nap 174 (174)
T PF01154_consen 161 GAGAVAMLIGPNAP 174 (174)
T ss_dssp EEEEEEEEEECS-S
T ss_pred cceeEEEEecCCCC
Confidence 99999999975
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=338.48 Aligned_cols=292 Identities=16% Similarity=0.216 Sum_probs=226.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.++++|+|+++++++|+++..+.+.+++ +.|+.+|++ +.++++..+|+++|++++|+++|++|++||.|++
T Consensus 3 ~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~--~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~ 80 (325)
T PRK12879 3 SYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRI--AHVEEYTSDLAIKAAERALARAGLDAEDIDLIIV 80 (325)
T ss_pred CCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 679999999999999999999999988776665 456666654 4788999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++....|+.+.+|++.||+ ++++++++.++|+|++.||..|.++|++|.. ++||||++|.+
T Consensus 81 ~~~~~~~~~~~~a~~l~~~lg~---~~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~~ 155 (325)
T PRK12879 81 ATTTPDYLFPSTASQVQARLGI---PNAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDRTT 155 (325)
T ss_pred EcCCCCCCCChHHHHHHHHhCC---CCCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCccccCc
Confidence 9999888889999999999998 5588999999999999999999999999954 99999999975
Q ss_pred -------ceeeeecCCCC-ceeccCceeeeccccccccccCCCC----------CCceecCcchHHHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAP-IAFESKLRGSHMSHAYDFYKPNLAS----------EYPVVDGKLSQTCYLMALDSCYKYFC 215 (453)
Q Consensus 154 -------AvA~Ll~~~~~-l~~~~~~~~~~~~~~~df~~p~~~~----------~~~~vdG~~s~~~y~~al~~~~~~~~ 215 (453)
|+|+||++++. ..+......+.......++.|..+. .+..++|+.........+.++++.++
T Consensus 156 ~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L 235 (325)
T PRK12879 156 CILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVL 235 (325)
T ss_pred eEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 88999988763 1111001111111111122222211 12344555432222333334444444
Q ss_pred HHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHH
Q 012909 216 QKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQV 295 (453)
Q Consensus 216 ~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~ 295 (453)
+ ++++.++|||+|++||++.++++. +.+.++++.+ |...++
T Consensus 236 ~------~~g~~~~did~~~~h~~~~~~~~~------------------------~~~~lg~~~~---------~~~~~~ 276 (325)
T PRK12879 236 E------KAGLTKDDIDWVIPHQANLRIIES------------------------LCEKLGIPME---------KTLVSV 276 (325)
T ss_pred H------HcCCCHHHCCEEEECCCCHHHHHH------------------------HHHHcCCCHH---------HhhhhH
Confidence 4 446889999999999999999876 3455678776 332222
Q ss_pred HHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 296 AKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 296 ~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
+++||++++|+|++|.+++++ +.+++||+|+|++||+|+++++++++|+
T Consensus 277 ----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~~~~~~l~~~~ 325 (325)
T PRK12879 277 ----------------EYYGNTSAATIPLALDLALEQ-GKIKPGDTLLLYGFGAGLTWAALLVKWG 325 (325)
T ss_pred ----------------hhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEeC
Confidence 799999999999999999998 7889999999999999999999999984
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=336.17 Aligned_cols=290 Identities=21% Similarity=0.278 Sum_probs=223.0
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|.|+|.++++|+|+++|+++|+++..+.+..++ ++|+..|+ +..++++..+|+.+|++++|+++|++|++||.||+
T Consensus 1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~aL~~ag~~~~dId~vi~ 78 (326)
T CHL00203 1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRH--LAPSSTSLTKLAAEAANKALDKAHMDPLEIDLIIL 78 (326)
T ss_pred CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEE--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 568999999999999999999999999766777 45666555 45788999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++.+.. +.+.++++.||+ .+++++++.++|+|++.||++|.++|++|.. +++|||++|.+
T Consensus 79 ~s~~~~~~~-~~~~~v~~~Lg~---~~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~~~~ 152 (326)
T CHL00203 79 ATSTPDDLF-GSASQLQAEIGA---TRAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSDRKT 152 (326)
T ss_pred EeCCCCCCC-chHHHHHHHhCC---CCCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCcccCCc
Confidence 998887654 567899999998 5788999999999999999999999999965 99999999985
Q ss_pred -------ceeeeecCCCC--c-eeccCceeeeccccccc-cc------------cCCCCCCceecCcchHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAP--I-AFESKLRGSHMSHAYDF-YK------------PNLASEYPVVDGKLSQTCYLMALDSC 210 (453)
Q Consensus 154 -------AvA~Ll~~~~~--l-~~~~~~~~~~~~~~~df-~~------------p~~~~~~~~vdG~~s~~~y~~al~~~ 210 (453)
|+|+||++.+. + .+.....+.+... ..+ .. |.....+..++|+......+..+..+
T Consensus 153 ~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 231 (326)
T CHL00203 153 CILFGDGAGAAIIGASYENSILGFKLCTDGKLNSH-LQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAV 231 (326)
T ss_pred eEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcce-EEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHH
Confidence 88999987653 1 1110000101000 000 01 11111223456665533222333333
Q ss_pred HHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHH
Q 012909 211 YKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290 (453)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k 290 (453)
++.++ ++.|++++|||+|++||++.++++. +.+.+++|++ |
T Consensus 232 i~~~L------~~~g~~~~did~~~~hq~~~~~~~~------------------------~~~~lgl~~~---------k 272 (326)
T CHL00203 232 IIKCL------NALNISIDEVDWFILHQANKRILEA------------------------IANRLSVPNS---------K 272 (326)
T ss_pred HHHHH------HHcCCCHHHCCEEEECCCCHHHHHH------------------------HHHHhCCCHH---------H
Confidence 44433 3457999999999999999999876 4456688876 3
Q ss_pred HHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
...++ +++||++|+|++++|.+++++ +++++||+|+|+++|+|++|++.+++|+
T Consensus 273 ~~~~l----------------~~~Gn~~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~v~~~~ 326 (326)
T CHL00203 273 MITNL----------------EKYGNTSAASIPLALDEAIQN-NKIQPGQIIVLSGFGAGLTWGAIVLKWK 326 (326)
T ss_pred hhhHH----------------HhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 33333 799999999999999999998 7889999999999999999999999984
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=336.77 Aligned_cols=288 Identities=15% Similarity=0.193 Sum_probs=226.0
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.++++|+|+++++++++++..+.+.+++. +|+..|++ .. +++..+|+.+|++++|+++|++|++||+||+
T Consensus 3 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~--~~-~~~~~~la~~Aa~~aL~~ag~~~~dId~li~ 79 (329)
T PRK07204 3 RYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHF--VD-GETSSYMGAEAAKKAVEDAKLTLDDIDCIIC 79 (329)
T ss_pred CCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEee--cC-CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 5689999999999999999999999998877774 45555554 35 8999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCC-CeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNT-DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~---------- 153 (453)
+|+++.+..|+.+.+|++.||+ .. .++++++.++|+|++.||..|..++++|.. ++||||++|.+
T Consensus 80 ~~~~~~~~~p~~a~~v~~~lgl--~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~~~ 155 (329)
T PRK07204 80 ASGTIQQAIPCTASLIQEQLGL--QHSGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQNE 155 (329)
T ss_pred ECCCCCCCCccHHHHHHHHhCC--CCCCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCcccCc
Confidence 9999988789999999999998 33 479999999999999999999999999955 99999999975
Q ss_pred --------ceeeeecCCCCceeccCceeeeccccc---cc---------------cccCCCCCCceecCcchHHHHHHHH
Q 012909 154 --------AVAMLIGPDAPIAFESKLRGSHMSHAY---DF---------------YKPNLASEYPVVDGKLSQTCYLMAL 207 (453)
Q Consensus 154 --------AvA~Ll~~~~~l~~~~~~~~~~~~~~~---df---------------~~p~~~~~~~~vdG~~s~~~y~~al 207 (453)
|+|+||++++.- .++.++++.... ++ +.+.....+..++|+.........+
T Consensus 156 ~~~lfGDGAaA~ll~~~~~~---~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
T PRK07204 156 SCILFGDGAAAVVITKGDHS---SRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYL 232 (329)
T ss_pred ceEEEecccEEEEEEEcCCC---CcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHH
Confidence 889999877531 112222111111 11 1110000022355655544444555
Q ss_pred HHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchh
Q 012909 208 DSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRD 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~ 287 (453)
..+++.++++ .|++++|||+|++||++.++++. +.+.+++|++
T Consensus 233 ~~~i~~~L~~------~gl~~~did~~~~H~~~~~~~~~------------------------i~~~l~l~~e------- 275 (329)
T PRK07204 233 MKFIDKLLMD------AGYTLADIDLIVPHQASGPAMRL------------------------IRKKLGVDEE------- 275 (329)
T ss_pred HHHHHHHHHH------cCCCHHHCCEEEeCCCCHHHHHH------------------------HHHHcCCCHH-------
Confidence 5555555544 46999999999999999999875 3455688776
Q ss_pred HHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 288 LEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 288 ~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
|.+.++ +++||++++|+|++|.+++++ +++++|++|+|++||+|+++++.++++
T Consensus 276 --~~~~~~----------------~~~Gn~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~ll~~ 329 (329)
T PRK07204 276 --RFVTIF----------------EDHGNMIAASIPVALFEAIKQ-KKVQRGNKILLLGTSAGLSIGGILLEY 329 (329)
T ss_pred --HhhhhH----------------hhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheeeEEeC
Confidence 333333 799999999999999999998 788999999999999999999999875
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=340.90 Aligned_cols=294 Identities=20% Similarity=0.198 Sum_probs=232.2
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhh-------CCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCC
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHD-------GVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKID 75 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~-------g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~ 75 (453)
+..+|+|.++++|+|+++++++++++.. +.+++++. +|+..|++ .++++++.+|+++|++++|+++|++
T Consensus 2 ~~~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~--~~~~~~~~~la~~Aa~~aL~~ag~~ 79 (338)
T PRK09258 2 KYSNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRW--WPEGTQLSDGAIAAGRKALAEAGID 79 (338)
T ss_pred cccceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEec--CCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 4568999999999999999999999864 34556563 56666654 4778999999999999999999999
Q ss_pred cCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--
Q 012909 76 PTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-- 153 (453)
Q Consensus 76 ~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-- 153 (453)
+++||.|+++|+++.+..|+.+.+|++.||+ +.+++++++.++|+|++.||+.|.++|++|.. ++||||++|++
T Consensus 80 ~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~ 155 (338)
T PRK09258 80 PSDIGLLINTSVCRDYLEPATACRVHHNLGL--PKSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESARE 155 (338)
T ss_pred HHHCCEEEEEcCCCCCCCChHHHHHHHHcCC--CCCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccch
Confidence 9999999999999888889999999999998 55789999999999999999999999999954 99999999941
Q ss_pred -------------------------------ceeeeecCCCCceeccCceeeeccccccccccC-CCCCCceecCcchHH
Q 012909 154 -------------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN-LASEYPVVDGKLSQT 201 (453)
Q Consensus 154 -------------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~-~~~~~~~vdG~~s~~ 201 (453)
|+|+||++++.-.-...+.+..+....+++... ....+..++++....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (338)
T PRK09258 156 IVEATIDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHHELCQGGRDGMRTDAVGLLK 235 (338)
T ss_pred hccchhhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcccccccCccceEEcHHHHHH
Confidence 888888876421000112222222222332211 012345578887777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccc
Q 012909 202 CYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVE 281 (453)
Q Consensus 202 ~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~ 281 (453)
.+...+..+++.++++. |++++|||+|++||++.++++. +.+.+++|++
T Consensus 236 ~~~~~~~~~~~~~L~~~------g~~~~did~~i~H~~~~~~~~~------------------------~~~~lgl~~~- 284 (338)
T PRK09258 236 EGVELAVDTWEAFLAQL------GWAVEQVDRVICHQVGAAHTRA------------------------ILKALGIDPE- 284 (338)
T ss_pred HHHHHHHHHHHHHHHHc------CCCHHHCCEEecCCCCHHHHHH------------------------HHHHhCCCHH-
Confidence 77776666766666554 5889999999999999999876 3455688876
Q ss_pred cccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 282 SYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 282 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
|.+.++ +++|||+++|+|++|++++++ +++++|++|+|++||+|+++++++++|
T Consensus 285 --------k~~~~~----------------~~~GN~~sas~~~~L~~~~~~-g~~~~Gd~vll~~~G~G~s~~~~~~~~ 338 (338)
T PRK09258 285 --------KVFTTF----------------PTLGNMGPASLPITLAMAAEE-GFLKPGDRVALLGIGSGLNCSMLEVKW 338 (338)
T ss_pred --------HceehH----------------hhhCCcHHhHHHHHHHHHHHh-CCCCCCCEEEEEEechhHhhHhHeeeC
Confidence 332222 699999999999999999988 788999999999999999999999886
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=336.84 Aligned_cols=289 Identities=21% Similarity=0.235 Sum_probs=221.0
Q ss_pred CCceeEEeEEEEEcCCceechhHH-hhhhCCCc---Cee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCC
Q 012909 5 HPKNVGILALDIYFPPTCVLQEAL-EVHDGVSK---GKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQ 78 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l-~~~~g~~~---~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~ 78 (453)
+.++++|.++++|+|+++|+++++ .+..+.+. .++ .+||..|++ +.++|++.+|+++|+++||+++|++|+|
T Consensus 4 ~~~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~--~~~~e~~~~la~~Aa~~aL~~a~~~~~d 81 (353)
T PRK12880 4 RFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYI--CDENTCVSDLGKHAANTLLQGLNIDKNS 81 (353)
T ss_pred cccccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEe--CCCCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 467899999999999999999975 44443221 233 356666654 4678999999999999999999999999
Q ss_pred cCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----
Q 012909 79 IGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----- 153 (453)
Q Consensus 79 Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----- 153 (453)
||+||++|+|+++..|+++.+|+++||+ ++++.+||+++||+|++.||++|.+|+++| +.+ ||||++|.+
T Consensus 82 Id~lI~~t~t~d~~~P~~a~~v~~~Lg~--~~~~~~~di~~~C~g~~~aL~~A~~~i~~~--~~~-~LVv~~e~~S~~~~ 156 (353)
T PRK12880 82 LDALIVVTQSPDFFMPSTACYLHQLLNL--SSKTIAFDLGQACAGYLYGLFVAHSLIQSG--LGK-ILLICGDTLSKFIH 156 (353)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHhCC--CCCceEEehhhhhHHHHHHHHHHHHHHHcC--CCC-EEEEEehhhhccCC
Confidence 9999999999999999999999999998 568999999999999999999999999999 448 999999985
Q ss_pred -------------ceeeeecCCCC--ceeccCceeeeccccccccccCCC----------------------CCCceecC
Q 012909 154 -------------AVAMLIGPDAP--IAFESKLRGSHMSHAYDFYKPNLA----------------------SEYPVVDG 196 (453)
Q Consensus 154 -------------AvA~Ll~~~~~--l~~~~~~~~~~~~~~~df~~p~~~----------------------~~~~~vdG 196 (453)
|+|+||++.+. ..+.....+.+.. ....|.++ ..+..++|
T Consensus 157 ~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~---~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 233 (353)
T PRK12880 157 PKNMNLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFD---KLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDG 233 (353)
T ss_pred cccCCceeeecccceEEEEEecCCCCceEEEEecCCCCC---eEEecCCCcCCCccccccccccccccccccCceEEEcC
Confidence 88999986532 0010000011000 01111100 01234677
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCC
Q 012909 197 KLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST 276 (453)
Q Consensus 197 ~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 276 (453)
+.....+...+..+.+.++++. |++.+|||+|++||++.+|++. +.+.++
T Consensus 234 ~~v~~~~~~~~~~~i~~~L~~~------gl~~~did~~v~HQ~~~~i~~~------------------------i~~~Lg 283 (353)
T PRK12880 234 ANIFNMALECEPKSFKEILEFS------KVDEKDIAFHLFHQSNAYLVDC------------------------IKEELK 283 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHH------------------------HHHHhC
Confidence 7775555555555555555544 6889999999999999999887 445668
Q ss_pred CCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheee
Q 012909 277 LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMF 356 (453)
Q Consensus 277 l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~ 356 (453)
++++ |.... +.+++|||+|+|+|++|..++++ +++ +++|.+||+|++|++.
T Consensus 284 l~~e---------k~~~~---------------~l~~~GNtssasip~~L~~~~~~-~~~----~~ll~~~G~G~s~g~~ 334 (353)
T PRK12880 284 LNDD---------KVPNF---------------IMEKYANLSACSLPALLCELDTP-KEF----KASLSAFGAGLSWGSA 334 (353)
T ss_pred CCHH---------Hhhhh---------------hHHhhCCHHHHHHHHHHHHHHHc-CCc----EEEEEEEchhhhheEe
Confidence 8876 33221 23799999999999999999976 443 5999999999999999
Q ss_pred EEEEec
Q 012909 357 SLQLQE 362 (453)
Q Consensus 357 ~l~~~~ 362 (453)
+++|.+
T Consensus 335 ll~~~~ 340 (353)
T PRK12880 335 VLNFKD 340 (353)
T ss_pred EEEECC
Confidence 999976
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=326.16 Aligned_cols=289 Identities=20% Similarity=0.243 Sum_probs=229.3
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|.++|.++++|+|+++++++++++..+.+..++ +.|+.+|+ ++.+++++.+|+.+|++++|+++|++|++||.|++
T Consensus 1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~al~~agl~~~~Id~~i~ 78 (318)
T TIGR00747 1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERR--IAADDETSSTMGFEAAKRAIENAGISKDDIDLIIV 78 (318)
T ss_pred CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEE--ECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 469999999999999999999999988766666 34555554 56789999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+++++....|+.+.++++.||+ ++++++++.++|++++.||+.|.++|++|.. +++|||++|.+
T Consensus 79 ~~~~~~~~~~~~a~~l~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~~~~ 153 (318)
T TIGR00747 79 ATTTPDHAFPSAACMVQAYLGI---KGIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTDRGT 153 (318)
T ss_pred ECCCCCCCCChHHHHHHHHhCC---CCCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCCCCe
Confidence 9998887788999999999998 5688999999999999999999999999965 99999999985
Q ss_pred -------ceeeeecCCCC-ceeccCceeeecc-cccc-ccccCC------CCCCceecCcchHHHHHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAP-IAFESKLRGSHMS-HAYD-FYKPNL------ASEYPVVDGKLSQTCYLMALDSCYKYFCQK 217 (453)
Q Consensus 154 -------AvA~Ll~~~~~-l~~~~~~~~~~~~-~~~d-f~~p~~------~~~~~~vdG~~s~~~y~~al~~~~~~~~~~ 217 (453)
|+|+||++++. ..+.. .. .++. ...| ++.|.. ...+..+++......+.+.+.++.+.++++
T Consensus 154 ~~~~GDGAaA~lL~~~~~~~~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 231 (318)
T TIGR00747 154 CVLFGDGAGAVVLGESEDPGGIIS-TH-LGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEA 231 (318)
T ss_pred EEEEecceeEEEEeecCCCCcEEE-EE-EEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999988753 11110 00 1111 1122 122221 122345566666555666666666665554
Q ss_pred HhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHH
Q 012909 218 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAK 297 (453)
Q Consensus 218 ~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~ 297 (453)
. ++.++|||+|++|+++.+++++ +++.+|++.++ .+.++
T Consensus 232 ~------g~~~~di~~~~~h~~~~~~~~~------------------------~~~~lgi~~~k---------~~~~~-- 270 (318)
T TIGR00747 232 N------GLDPEDIDWFVPHQANLRIIEA------------------------LAKRLELDMSQ---------VVKTV-- 270 (318)
T ss_pred c------CCCHHHCCEEEECCCCHHHHHH------------------------HHHHcCCCHHH---------eeehH--
Confidence 4 5889999999999999999877 34566888762 32222
Q ss_pred HHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 298 QLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 298 ~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
+++||++++|++++|++++++ +.+.+||+|++++||+|+++++.+++|
T Consensus 271 --------------~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~vll~~~G~G~t~~~~~l~~ 318 (318)
T TIGR00747 271 --------------HKYGNTSAASIPLALDELLRT-GRIKPGDLLLLVAFGGGLTWGAALVRF 318 (318)
T ss_pred --------------hhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeeEEEEEC
Confidence 689999999999999999998 788999999999999999999999986
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=331.88 Aligned_cols=290 Identities=14% Similarity=0.172 Sum_probs=219.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.+++.|+|++.++++++.+..+.+++++ ++||.+|+ ++.++++..+|+++|+++||+++|++|+|||.||+
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~--~~~~~~~~~~La~~Aa~~aL~~agi~~~dId~li~ 123 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRR--VLSGDETLTSLAVEAAKKALEMAGVDPEDVDLVLL 123 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEe--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 579999999999999999999999998777776 45666655 44788999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++++. ++.+.+|++.||+ .+++++|+.++|+|++.||++|..+|++|.. ++||||++|.+
T Consensus 124 ~s~~~~~~-~~~a~~v~~~LG~---~~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d~~~ 197 (379)
T PLN02326 124 CTSSPDDL-FGSAPQVQAALGC---TNALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTDRGT 197 (379)
T ss_pred EeCCCCcc-CcHHHHHHHHhCC---CCCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccccCc
Confidence 99888764 4678999999998 5899999999999999999999999999954 99999999985
Q ss_pred -------ceeeeecCCCC----c-eeccCceeeecccc----ccc-----cccC----------CCCCCceecCcchHHH
Q 012909 154 -------AVAMLIGPDAP----I-AFESKLRGSHMSHA----YDF-----YKPN----------LASEYPVVDGKLSQTC 202 (453)
Q Consensus 154 -------AvA~Ll~~~~~----l-~~~~~~~~~~~~~~----~df-----~~p~----------~~~~~~~vdG~~s~~~ 202 (453)
|+|+||++.+. + .+.....+.+.... .+. ..|. .+..+..++|+.....
T Consensus 198 ~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 277 (379)
T PLN02326 198 CILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKF 277 (379)
T ss_pred eEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHH
Confidence 88999987642 1 11100000000000 000 0000 0001123455444222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCcccc
Q 012909 203 YLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVES 282 (453)
Q Consensus 203 y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~ 282 (453)
....+..+.+.++ ++++++.+|||+|++||++.++++. +.+.+|+++++
T Consensus 278 ~~~~~~~~i~~~L------~~~gl~~~dId~~v~Hq~n~~~~~~------------------------~~~~Lgl~~ek- 326 (379)
T PLN02326 278 AVRCVPQVIESAL------QKAGLTAESIDWLLLHQANQRIIDA------------------------VAQRLGIPPEK- 326 (379)
T ss_pred HHHHHHHHHHHHH------HHcCCCHHHCCEEEECCCCHHHHHH------------------------HHHHcCCCHHH-
Confidence 2222223333333 4457999999999999999999876 44567888762
Q ss_pred ccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 283 YQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 283 ~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
+..+ .+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.+++|
T Consensus 327 --------~~~~----------------l~~~GNt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 379 (379)
T PLN02326 327 --------VISN----------------LANYGNTSAASIPLALDEAVRS-GKVKKGDVIATAGFGAGLTWGSAIVRW 379 (379)
T ss_pred --------eeec----------------HhhcCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhheeeEEEEEC
Confidence 2222 2799999999999999999998 788999999999999999999999876
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=323.50 Aligned_cols=286 Identities=20% Similarity=0.233 Sum_probs=227.1
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
+++|.+++.|+|+++++++++.+..+.+.+++....|.+++.++.+++++.+|+.+|++++|+++|+++++||.|+++|+
T Consensus 1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~ag~~~~~Id~li~~~~ 80 (320)
T cd00830 1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDAGIDADDIDLIIVATS 80 (320)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 58999999999999999999999998887777433444444455778999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++.+..|+.+.+|++.||+ ++++++++.++|++++.||..|.++|++|.. ++||||++|.+
T Consensus 81 ~~~~~~~~~~~~l~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~~~~ 155 (320)
T cd00830 81 TPDYLFPATACLVQARLGA---KNAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTDRSTAVL 155 (320)
T ss_pred CCCCCCCcHHHHHHHHhCC---CCCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCceEE
Confidence 9887789999999999998 4889999999999999999999999999954 99999999975
Q ss_pred ----ceeeeecCCCCceeccCceeeecccc---ccc-cccCCC-----------CCCceecCcchHHHHHHHHHHHHHHH
Q 012909 154 ----AVAMLIGPDAPIAFESKLRGSHMSHA---YDF-YKPNLA-----------SEYPVVDGKLSQTCYLMALDSCYKYF 214 (453)
Q Consensus 154 ----AvA~Ll~~~~~l~~~~~~~~~~~~~~---~df-~~p~~~-----------~~~~~vdG~~s~~~y~~al~~~~~~~ 214 (453)
|+|+||++.+. ..++.++.+... .|. ..|..+ ..+..++++.....+.+.+..+++.+
T Consensus 156 ~GDgAaA~ll~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 232 (320)
T cd00830 156 FGDGAGAVVLEATEE---DPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEA 232 (320)
T ss_pred EeccceEEEEEecCC---CCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHH
Confidence 89999988753 011222221111 111 111111 12334667776666666666676666
Q ss_pred HHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHH
Q 012909 215 CQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQ 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~ 294 (453)
+++. +++++|||+|++||++.+++++ +.+.+|++.+ |...+
T Consensus 233 l~~~------g~~~~di~~~~~h~~~~~~~~~------------------------~~~~lgl~~~---------~~~~~ 273 (320)
T cd00830 233 LEKA------GLTPDDIDWFVPHQANLRIIEA------------------------VAKRLGLPEE---------KVVVN 273 (320)
T ss_pred HHHc------CCCHHHCCEEEECCCCHHHHHH------------------------HHHHhCCCHH---------Hhhhh
Confidence 6554 5889999999999999999877 3345678776 33322
Q ss_pred HHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeE
Q 012909 295 VAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 357 (453)
Q Consensus 295 ~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~ 357 (453)
+ +++||++++|+|++|.+++++ +++++|++|+|++||+|+++++.+
T Consensus 274 ~----------------~~~Gn~~sas~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~l 319 (320)
T cd00830 274 L----------------DRYGNTSAASIPLALDEAIEE-GKLKKGDLVLLLGFGAGLTWGAAL 319 (320)
T ss_pred H----------------HhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchHHhhHHhh
Confidence 3 799999999999999999998 788899999999999999998764
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=323.70 Aligned_cols=292 Identities=16% Similarity=0.142 Sum_probs=220.2
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
+|+|+|.++++|+|++.|+++++++..|.+.+++....|.+++.++.++++..+|+++|++++|+++|++|++||.||++
T Consensus 2 ~~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~Aa~~aL~~ag~~~~dId~li~~ 81 (339)
T PRK06840 2 EMNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQAGVDPAAIDVVIYI 81 (339)
T ss_pred CCceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 47899999999999999999999999998887774334444444557889999999999999999999999999999977
Q ss_pred cc-cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHh-CCCCCCeEEEEEeecc----------
Q 012909 86 SE-TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVES-ASWDGRYGLVVCTDTA---------- 153 (453)
Q Consensus 86 t~-s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~s-g~~~~~~aLVv~~d~~---------- 153 (453)
++ ++++..|+.+.+|++.||+ ++++++++.++|+|++.||..|.++|++ |.. +++|||++|..
T Consensus 82 ~~~~~~~~~p~~a~~l~~~lGl---~~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~~~~ 156 (339)
T PRK06840 82 GSEHKDYPVWSSAPKIQHEIGA---KNAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYDNPR 156 (339)
T ss_pred ccCCCCCCCCchHHHHHHHhCC---CCcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcCCCC
Confidence 65 4555688999999999998 5788999999999999999999999999 755 89999997753
Q ss_pred ----------ceeeeecCCCCceeccCceeeeccc----cccccccCCCCCCc-------------eecCcchHHHHH--
Q 012909 154 ----------AVAMLIGPDAPIAFESKLRGSHMSH----AYDFYKPNLASEYP-------------VVDGKLSQTCYL-- 204 (453)
Q Consensus 154 ----------AvA~Ll~~~~~l~~~~~~~~~~~~~----~~df~~p~~~~~~~-------------~vdG~~s~~~y~-- 204 (453)
|+|+||++++.- .++.++.... ...+..|.++...| .+++.......+
T Consensus 157 ~~~~~~~GDgAaA~ll~~~~~~---~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (339)
T PRK06840 157 TRFMFNFAAGGSAALLKKDAGK---NRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDE 233 (339)
T ss_pred eeeeccCCCceeEEEEEecCCC---CceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHh
Confidence 889999887531 1111111111 11122232221111 112222221111
Q ss_pred ---HHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccc
Q 012909 205 ---MALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVE 281 (453)
Q Consensus 205 ---~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~ 281 (453)
..+..+.+.++ .++|++++|||++++||++.++++. +.+.+++++++
T Consensus 234 ~~~~~~~~~i~~~L------~~~gl~~~did~~~~h~~~~~~~~~------------------------~~~~Lgl~~~~ 283 (339)
T PRK06840 234 VSIPNFLKVIREAL------RKSGYTPKDIDYLAILHMKRSAHIA------------------------LLEGLGLTEEQ 283 (339)
T ss_pred hHHHHHHHHHHHHH------HHcCCCHHHCCEEEECCcCHHHHHH------------------------HHHHcCCCHHH
Confidence 12223333343 4457999999999999999998765 34567888762
Q ss_pred cccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 282 SYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 282 ~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
. .+.+++|||+++|++++|.+++++ +++++|++|+|+++|+|++|++.+++|+
T Consensus 284 ~--------------------------~~~~~~Gn~~sas~~~~L~~~~~~-~~~~~Gd~ill~~~G~G~s~~~~~l~~~ 336 (339)
T PRK06840 284 A--------------------------IYLDEYGHLGQLDQILSLHLALEQ-GKLKDGDLVVLVSAGTGYTWAATVIRWG 336 (339)
T ss_pred e--------------------------EeHHhccchhhhhHHHHHHHHHHc-CCCCCCCEEEEEEEehhhheeEEEEEec
Confidence 1 023799999999999999999987 7788999999999999999999999997
Q ss_pred c
Q 012909 362 E 362 (453)
Q Consensus 362 ~ 362 (453)
+
T Consensus 337 ~ 337 (339)
T PRK06840 337 P 337 (339)
T ss_pred C
Confidence 5
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=315.60 Aligned_cols=289 Identities=20% Similarity=0.231 Sum_probs=230.3
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
+.|+|.++++|+|+++++++++++..+.+..++ +.|+..++ ++.++++..+|+.+|++++|+++|+++++||.|++
T Consensus 2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~--~~~~~~~~~~la~~A~~~al~~agl~~~~id~vi~ 79 (319)
T PRK09352 2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERR--IAAPDETTSDLATEAAKKALEAAGIDPEDIDLIIV 79 (319)
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEE--eCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 579999999999999999999999988766655 45666665 44788999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++....|+.+.+|+..||+ .+++++++.++|++++.||..|..+|++|.. ++|||+++|.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~lG~---~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~~~~ 154 (319)
T PRK09352 80 ATTTPDYAFPSTACLVQARLGA---KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTDRST 154 (319)
T ss_pred EcCCCCCCCchHHHHHHHHhCC---CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCcccCCc
Confidence 9998877778899999999998 6788999999999999999999999999955 99999999975
Q ss_pred -------ceeeeecCCCC--c-eeccCceeeeccccccccccCCCCC------CceecCcchHHHHHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAP--I-AFESKLRGSHMSHAYDFYKPNLASE------YPVVDGKLSQTCYLMALDSCYKYFCQK 217 (453)
Q Consensus 154 -------AvA~Ll~~~~~--l-~~~~~~~~~~~~~~~df~~p~~~~~------~~~vdG~~s~~~y~~al~~~~~~~~~~ 217 (453)
|+|+||++++. + .++. .+.......+..|..+.. +..++|+.....+...+.++.+.++++
T Consensus 155 ~~~~gDGaaA~ll~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 231 (319)
T PRK09352 155 CVLFGDGAGAVVLGASEEPGILSTHL---GSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEA 231 (319)
T ss_pred eEEEeccceEEEEEEcCCCCeEEEEE---EEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999988752 1 1111 111111111223432221 334567666555666666666666655
Q ss_pred HhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHH
Q 012909 218 FEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAK 297 (453)
Q Consensus 218 ~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~ 297 (453)
. +++++|||+|++|+++.++++. +++.+++|.++ ...++
T Consensus 232 ~------g~~~~di~~~~~h~~~~~~~~~------------------------~~~~lg~~~~~---------~~~~~-- 270 (319)
T PRK09352 232 A------GLTPEDIDWLVPHQANLRIIDA------------------------TAKKLGLPMEK---------VVVTV-- 270 (319)
T ss_pred c------CCCHHHCCEEEECCCCHHHHHH------------------------HHHHhCCCHHH---------hhhhH--
Confidence 4 5889999999999999998876 34556888762 22222
Q ss_pred HHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 298 QLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 298 ~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
.++||+++++++++|.+++++ +++++||+|+++|||+|++|++++++|+
T Consensus 271 --------------~~~Gn~~~a~~~~~L~~~~~~-g~~~~Gd~vll~s~G~G~~~~~~ll~~~ 319 (319)
T PRK09352 271 --------------DKYGNTSAASIPLALDEAVRD-GRIKRGDLVLLEGFGGGLTWGAALVRWP 319 (319)
T ss_pred --------------HhhCCHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeC
Confidence 689999999999999999998 7788999999999999999999999985
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=324.83 Aligned_cols=292 Identities=19% Similarity=0.230 Sum_probs=218.9
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCC--Cc----------Cee--eEcccceEEeccC-CC------------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGV--SK----------GKY--TVGLGQDCMAFCS-EV------------------ 54 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~--~~----------~k~--~~Gig~r~~av~~-~~------------------ 54 (453)
.+.|.++++|+|++.++|+++.+..+. +. .++ ++||.+|++..+. .+
T Consensus 1 ~~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T cd00831 1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI 80 (361)
T ss_pred CcEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhh
Confidence 367999999999999999999998753 11 333 4799999987642 11
Q ss_pred --CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHH
Q 012909 55 --EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNC 131 (453)
Q Consensus 55 --ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A 131 (453)
|++.+|+++|++++|+++|++|++||+||++|+++ +..|+.+.+|+++||+ ++++.++|+. +||+|++.||++|
T Consensus 81 ~~~~~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl--~~~~~~~dv~~~~C~~~~~al~~A 157 (361)
T cd00831 81 ALEEARELAEEAARGALDEAGLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGL--RPDVKRYNLGGMGCSAGAIALDLA 157 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCC--CcccchhccccccchhHHHHHHHH
Confidence 26899999999999999999999999999999887 5689999999999999 5579999998 8999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCce--ecc--Cceeeeccccccc---
Q 012909 132 VNWVESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPIA--FES--KLRGSHMSHAYDF--- 182 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l~--~~~--~~~~~~~~~~~df--- 182 (453)
.++++++. .++||||++|.+ |+|+||++++... ... ...+.++....+.
T Consensus 158 ~~~~~~~~--~~~aLvv~~e~~s~~~~~~d~~~~~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 235 (361)
T cd00831 158 KDLLEANP--GARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDA 235 (361)
T ss_pred HHHHHHCC--CCEEEEEEeecccceeCCCCcHHHhhhhhhccCCceEEEEEcCCCcccccccceeeecccceeeecCCCc
Confidence 99999994 499999999973 8899998875311 000 1112222111111
Q ss_pred --cccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcC--CCCccCccEEEecCcchHHHHHHHHhhhhhhhhc
Q 012909 183 --YKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR--QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLR 258 (453)
Q Consensus 183 --~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~--~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~ 258 (453)
|++.. ..+....++.....+...+..+++.+++ +. +++.+|||+|++||++.++++.
T Consensus 236 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~i~~~L~------~~~~g~~~~did~~~~H~~~~~i~~~------------ 296 (361)
T cd00831 236 MGWHLGE-EGLTFVLSRDVPRLVEKNLERVLRKLLA------RLGIGLFKLAFDHWCVHPGGRAVLDA------------ 296 (361)
T ss_pred eEEEEEc-ceEEEEeChhHHHHHHHHHHHHHHHHhc------cccCCCccccceEEEECCCChHHHHH------------
Confidence 11110 0111222333333344444455554443 34 6889999999999999999876
Q ss_pred cCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCC
Q 012909 259 NASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLE 338 (453)
Q Consensus 259 ~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~ 338 (453)
+++.+++++++ . .+|+...+++|||+|||+|++|.+++++ +++++
T Consensus 297 ------------v~~~lgl~~~~---------~-------------~~s~~~l~~~GN~~sasi~~~L~~~~~~-g~~~~ 341 (361)
T cd00831 297 ------------VEKALGLSPED---------L-------------EASRMVLRRYGNMSSSSVLYVLAYMEAK-GRVKR 341 (361)
T ss_pred ------------HHHHcCCCHHH---------H-------------HHHHHHHHHhCCchhccHHHHHHHHHHh-CCCCC
Confidence 44567888762 2 2233344899999999999999999998 78889
Q ss_pred CCEEEEEEecchhhheeeEE
Q 012909 339 GKRVIMFSYGSGLTATMFSL 358 (453)
Q Consensus 339 Gd~ill~syGsG~~~~~~~l 358 (453)
|++|+|++||+|+++++.++
T Consensus 342 Gd~vll~~~G~G~s~~~~l~ 361 (361)
T cd00831 342 GDRGLLIAFGPGFTCESAVW 361 (361)
T ss_pred CCEEEEEEEcCCceeeeeeC
Confidence 99999999999999998763
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=322.23 Aligned_cols=296 Identities=18% Similarity=0.192 Sum_probs=219.3
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhh----CCCcCe-------e--eEcccceEEeccCC------------------
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHD----GVSKGK-------Y--TVGLGQDCMAFCSE------------------ 53 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~----g~~~~k-------~--~~Gig~r~~av~~~------------------ 53 (453)
++..+.|.+|++|+|++.++|+++.+.. +.+..+ + ++||.+|+++.+.+
T Consensus 18 ~~~~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (391)
T PLN03169 18 NPGKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQ 97 (391)
T ss_pred CCCCeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHH
Confidence 3567999999999999999999998852 212222 2 37999999865221
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHHH
Q 012909 54 -----VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAA 127 (453)
Q Consensus 54 -----~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~A 127 (453)
+|.+.+||++|+++||+++|++|++||+||++|++ .+..|+.+.+|+++||+ ++.+ +++|+.+||+|+++|
T Consensus 98 r~~~~~e~~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl--~~~~~~~~d~~~gC~g~~~a 174 (391)
T PLN03169 98 RLDIANEAVTQMAVEASLACIKEWGRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGL--SPDVQRVMLYFLGCSGGVAG 174 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCc--CCcceeeecccChhHHHHHH
Confidence 56789999999999999999999999999999986 66799999999999999 5555 589999999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeecccccccc
Q 012909 128 LFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFY 183 (453)
Q Consensus 128 L~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~ 183 (453)
|.+|.++++++. .++||||++|.+ |+|+||++++....+.+....+... .+ +
T Consensus 175 L~~A~~~~~~~~--~~~vLvv~~e~~s~~~~~~~~~~~~d~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~~-~~-~ 250 (391)
T PLN03169 175 LRVAKDIAENNP--GSRVLLTTSETTILGFRPPSPDRPYDLVGAALFGDGAAAVIIGADPIPVSESPFFELHTAI-QQ-F 250 (391)
T ss_pred HHHHHHHHHhCC--CCeEEEEEEEcChhhccCCCccchhhhhhhhhccCceEEEEEecCCCcccCCcceEEEeee-ee-E
Confidence 999999999994 599999999982 8899998764210000111111100 01 1
Q ss_pred ccCCC---------CCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCcc--EEEecCcchHHHHHHHHhhh
Q 012909 184 KPNLA---------SEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD--YFVFHSPYNKLVQKSFARLF 252 (453)
Q Consensus 184 ~p~~~---------~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d--~~v~H~p~~km~~ka~~~l~ 252 (453)
.|... ..+..++|+.........+..+.+.+++ ++|++.+|+| +|++||++.+|++.
T Consensus 251 ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~------~~gl~~~did~~~~v~Hq~n~~il~~------ 318 (391)
T PLN03169 251 LPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMK------KAGLVEKDYNDLFWAVHPGGPAILNR------ 318 (391)
T ss_pred cCCCccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHH------HcCCCCCCCCcceEEecCCCHHHHHH------
Confidence 12110 0122345555544444445555555544 4468888899 99999999999876
Q ss_pred hhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh
Q 012909 253 FNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE 332 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~ 332 (453)
+++.||++++ |.. .|+...+++|||+|+|+++.|..++++
T Consensus 319 ------------------v~~~Lgl~~e---------k~~-------------~s~~~l~~~GNtsSasip~~L~~~~~~ 358 (391)
T PLN03169 319 ------------------LEKKLKLAPE---------KLE-------------CSRRALMDYGNVSSNTIVYVLEYMREE 358 (391)
T ss_pred ------------------HHHHcCCCHH---------HHH-------------HHHHHHHHhCCchHhHHHHHHHHHHHh
Confidence 4456788876 222 222334899999999999999999977
Q ss_pred cCcCC---CCCEEEEEEecchhhheeeEEEE
Q 012909 333 KHSSL---EGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 333 ~~~~~---~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
++++ +|++++|++||+|++|++.+++|
T Consensus 359 -~~~~~~~~gd~~ll~afG~G~s~~~~ll~~ 388 (391)
T PLN03169 359 -LKKKGEEDEEWGLILAFGPGITFEGILARN 388 (391)
T ss_pred -hcccCCCCCcEEEEEEEcccHhHHHHHHhh
Confidence 4544 68999999999999999999886
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=319.31 Aligned_cols=301 Identities=19% Similarity=0.192 Sum_probs=220.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcC-------ee--eEcccceEEeccC---CCCCHHHHHHHHHHHHHHHcCC
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKG-------KY--TVGLGQDCMAFCS---EVEDVISMSLTVVTSLLEKYKI 74 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~-------k~--~~Gig~r~~av~~---~~ed~~~la~~Aa~~aL~~agi 74 (453)
|+|+|.+++.|+|++.|++++++++.+..++ ++ ++||.+|+++.+. +.++..+|+++|++++|+++|+
T Consensus 1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~agi 80 (378)
T PRK06816 1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDAGF 80 (378)
T ss_pred CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999988775322 33 4799999987533 2357899999999999999999
Q ss_pred CcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-
Q 012909 75 DPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA- 153 (453)
Q Consensus 75 ~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~- 153 (453)
+|++||.||++|.+++...|+.+..|++.||+ ++++++++.++|+|++.||+.|..+|++|.. ++||||++|++
T Consensus 81 ~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl---~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s 155 (378)
T PRK06816 81 SLGDIELLACGTSQPDQLMPGHASMVHGELGA---PPIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELAS 155 (378)
T ss_pred CHHHCCEEEEEECCCCcCChHHHHHHHhhCCC---CCCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccch
Confidence 99999999999999877788889999999998 5678999999999999999999999999955 99999999863
Q ss_pred --------------------------------------ceeeeecCCCC---ceec--cCceeeecccc-----------
Q 012909 154 --------------------------------------AVAMLIGPDAP---IAFE--SKLRGSHMSHA----------- 179 (453)
Q Consensus 154 --------------------------------------AvA~Ll~~~~~---l~~~--~~~~~~~~~~~----------- 179 (453)
|+|+||++.+. +.+. .....++..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (378)
T PRK06816 156 RWFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKN 235 (378)
T ss_pred hhhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccCccceecCCccC
Confidence 67888876542 1111 00001111110
Q ss_pred ----ccccccCCCCCCceecCcchHHHHHHHHHHHHH-----HHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHh
Q 012909 180 ----YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK-----YFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFAR 250 (453)
Q Consensus 180 ----~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~-----~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~ 250 (453)
...|++. ..+.+..+|+..+..+...+.+.+. .+.+.+ ++.|++++|||+|++||++.+|++...++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L---~~~gl~~~DId~~v~Hq~n~~~~~~v~~~ 311 (378)
T PRK06816 236 EDGSLKGWSDY-PPEEAEAASALSLKQDVRLLNENIVVYTIKPLLELV---DKRNLDPDDIDYFLPHYSSEYFREKIVEL 311 (378)
T ss_pred CCCCccCcccC-CHHHHHhccCchHHhHHHHHHHHhHHHHHHHHHHHH---HHcCCChhhCCEEeeCcccHHHHHHHHHH
Confidence 0112211 0011123344333333333322221 111222 45679999999999999999999885543
Q ss_pred hhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHH
Q 012909 251 LFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL 330 (453)
Q Consensus 251 l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll 330 (453)
|-. ..+|+|+++ .+.++ .++||+++||+|++|++++
T Consensus 312 l~~-------------------~~~gl~~~k---------~~~~~----------------~~~GNt~sAsipi~L~~a~ 347 (378)
T PRK06816 312 LAK-------------------AGFMIPEEK---------WFTNL----------------ATVGNTGSASIYIMLDELL 347 (378)
T ss_pred HHh-------------------ccCCCChhh---------eEEec----------------cccccccchHHHHHHHHHH
Confidence 310 124777763 22222 7999999999999999999
Q ss_pred hhcCcCCCCCEEEEEEecch-hhheeeEEEEe
Q 012909 331 HEKHSSLEGKRVIMFSYGSG-LTATMFSLQLQ 361 (453)
Q Consensus 331 ~~~~~~~~Gd~ill~syGsG-~~~~~~~l~~~ 361 (453)
++ +++++||+|+++++||| +.+++++++|.
T Consensus 348 ~~-g~~~~Gd~vl~~~~~s~~~~~~~~~~~~~ 378 (378)
T PRK06816 348 NS-GRLKPGQKILCFVPESGRFSTAFMLLTVV 378 (378)
T ss_pred Hc-CCCCCCCEEEEEEecccchhheeEEEEEC
Confidence 98 78999999999999988 99999999984
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=301.03 Aligned_cols=288 Identities=36% Similarity=0.540 Sum_probs=216.7
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
.|+|.++++|+|+++++++++++.++.+.-...+|+.+|+++ .++++..+|+.+|++++|+++|++|++||.|+++++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~gi~~r~~~--~~~~~~~~l~~~a~~~aL~~ag~~~~~Id~li~~~~ 78 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKYTTGIGQRHMA--GDDEDVPTMAVEAARRALERAGIDPDDIGLLIVATE 78 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhCCCcceeeeecceeEec--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcC
Confidence 479999999999999999999999987643446799988876 457899999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++....|+.+.+|++.||+ ++++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 79 ~~~~~~~~~~~~i~~~lg~---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~~~~~~~ 153 (324)
T cd00827 79 SPIDKGKSAATYLAELLGL---TNAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGSALEPTL 153 (324)
T ss_pred CCCCCCccHHHHHHHHcCC---CCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCCCccccc
Confidence 8887788999999999998 4899999999999999999999999999965 99999999986
Q ss_pred ---ceeeeecCCCCceeccCceeeecccccccc---ccCCCCC-----------CceecC--cchHHHHHHHHHHHHHHH
Q 012909 154 ---AVAMLIGPDAPIAFESKLRGSHMSHAYDFY---KPNLASE-----------YPVVDG--KLSQTCYLMALDSCYKYF 214 (453)
Q Consensus 154 ---AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~---~p~~~~~-----------~~~vdG--~~s~~~y~~al~~~~~~~ 214 (453)
|+|+||++++... ..++..++......++ .+..... ....++ +.....+...+..+.+..
T Consensus 154 gdgaaA~ll~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (324)
T cd00827 154 GDGAAAMLVSRNPGIL-AAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKA 232 (324)
T ss_pred cCceEEEEEecCcccc-cCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHH
Confidence 8999998876310 0112222222221111 1100000 011232 222223334444444444
Q ss_pred HHHHhhhhcCCCCccCccEEEecCcch-HHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHH
Q 012909 215 CQKFEKLEGRQFSMLDVDYFVFHSPYN-KLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 293 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~d~d~~v~H~p~~-km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~ 293 (453)
+++ .+++ +|+|+|++||++. ++.+.. .+.++++.++
T Consensus 233 l~~------~~~~-~~i~~~~~h~~~~~~~~~~~------------------------~~~l~~~~~~------------ 269 (324)
T cd00827 233 LDR------AGLS-EDIDYFVPHQPNGKKILEAV------------------------AKKLGGPPEK------------ 269 (324)
T ss_pred HHH------cccc-cccceeeccCchHHHHHHHH------------------------HHHccchHhh------------
Confidence 433 3577 8999999999999 887663 3344555431
Q ss_pred HHHHHHhhhhcCCCc-ccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeE
Q 012909 294 QVAKQLYDLKVQPST-LIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 357 (453)
Q Consensus 294 ~~~~~~~~~~~~~s~-~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~ 357 (453)
+.++. ...+++||+++||+|++|.+++++ +++++||+|+|+|+|+|+++++++
T Consensus 270 ----------~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~-~~~~~Gd~vl~~~~G~G~~~~~~~ 323 (324)
T cd00827 270 ----------ASQTRWILLRRVGNMYAASILLGLASLLES-GKLKAGDRVLLFSYGSGFTAEAFV 323 (324)
T ss_pred ----------hccchhhHHHHhCchHHHHHHHHHHHHHhc-CCCCCCCEEEEEEeccchhheecc
Confidence 11111 134899999999999999999998 778899999999999999999875
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=302.57 Aligned_cols=295 Identities=18% Similarity=0.251 Sum_probs=212.7
Q ss_pred eeEEeEEEEEcCCceechhHHhhhh-C--CCcC---------ee--eEcccceEEeccCC--------------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHD-G--VSKG---------KY--TVGLGQDCMAFCSE-------------------- 53 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~-g--~~~~---------k~--~~Gig~r~~av~~~-------------------- 53 (453)
.+.|.++++|+|++.++|+++++.. . .+.+ ++ ++||.+|+++..+.
T Consensus 22 ~~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~ 101 (399)
T PLN03171 22 LAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARL 101 (399)
T ss_pred CcEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHH
Confidence 4789999999999999999999873 2 1222 23 57999999864220
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHHHHH
Q 012909 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (453)
Q Consensus 54 ---~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~AL~ 129 (453)
.|.+.+||++|++++|+++|++|+|||+||++|+|+.+ .|+++.+|+++||+ +..+ +++++.+||+|++.||+
T Consensus 102 ~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 178 (399)
T PLN03171 102 DIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGAAALR 178 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCC--CcccceeeccCCccHHHHHHHH
Confidence 04789999999999999999999999999999999986 79999999999998 4444 36788889999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCc----eeccCceeeeccccc-
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPI----AFESKLRGSHMSHAY- 180 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l----~~~~~~~~~~~~~~~- 180 (453)
+|.++++++. .++||||++|.+ |+|+||++.+.. .++ +...++....
T Consensus 179 ~A~~li~~~~--~~~vLVv~~e~~s~~~~~~d~~~~~~~v~~~LFGDGAaA~vl~~~~~~~~~~~~~--l~~~~~~~~p~ 254 (399)
T PLN03171 179 LAKDLAENNR--GARVLVVAAEITLLLFNGPDEGCFQTLLNQGLFGDGAAAVIVGADADAAERPLFE--IVSAAQAIIPE 254 (399)
T ss_pred HHHHHHHhCC--CCeEEEEEEeccccccCCCCcccHHhhhccccccCccEEEEEecCCCCCCCCceE--EEEeeeEEecC
Confidence 9999999995 499999999995 778888775320 001 1111111111
Q ss_pred -----cccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHH-hhh--hcCCCCccCccEEEecCcchHHHHHHHHhhh
Q 012909 181 -----DFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKF-EKL--EGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 252 (453)
Q Consensus 181 -----df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~-~~~--~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~ 252 (453)
.+..+..+ ++++++.......+....+...++. ... ...+++.+|++|+ +||++.+|++.
T Consensus 255 ~~~~~~~~~~~~g-----~~~~~~~~~vp~~i~~~l~~~l~~~l~~~~~~~~g~~~~di~~~-~Hq~~~~il~~------ 322 (399)
T PLN03171 255 SDDAINMHFTEGG-----LDGNIGTRQVPGLIGDNIERCLLDAFAPLLGGDGGAEWNDLFWA-VHPGSSAILDQ------ 322 (399)
T ss_pred CchheEEEEEcCC-----ceEEECchhHHHHHHHHHHHHHHHHHHhhcccccCCCcccceEE-EcCCcHHHHHH------
Confidence 11111111 2334443333344433333333221 000 1235677899887 59999999876
Q ss_pred hhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh
Q 012909 253 FNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE 332 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~ 332 (453)
+.+.+|++.+ |.. .|+...+++|||+++|++++|..++++
T Consensus 323 ------------------v~~~Lgl~~e---------k~~-------------~s~~~l~~yGNtssaSip~~L~~~~~~ 362 (399)
T PLN03171 323 ------------------VDAALGLEPE---------KLA-------------ASRRVLSDYGNMFGATVIFALDELRRQ 362 (399)
T ss_pred ------------------HHHHcCCCHH---------HhH-------------HHHHHHHHhCcchhhhHHHHHHHHHhh
Confidence 4456788886 332 222234899999999999999999987
Q ss_pred cCc--CCCC---CEEEEEEecchhhheeeEEEEec
Q 012909 333 KHS--SLEG---KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 333 ~~~--~~~G---d~ill~syGsG~~~~~~~l~~~~ 362 (453)
++ +++| ++|+|++||+|++|++.+++|..
T Consensus 363 -~~~~~~~G~~~d~vll~~fG~Glt~~~~ll~~~~ 396 (399)
T PLN03171 363 -MEEAAAAGAWPELGVMMAFGPGLTVDAMLLHASG 396 (399)
T ss_pred -HhhcCCCCCCcceEEEEEEcccHHHHHHHhhccc
Confidence 43 4677 99999999999999999999864
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=295.57 Aligned_cols=294 Identities=16% Similarity=0.216 Sum_probs=208.0
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCC------Cc---Cee-----eEcccceEEeccCC--------------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGV------SK---GKY-----TVGLGQDCMAFCSE-------------------- 53 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~------~~---~k~-----~~Gig~r~~av~~~-------------------- 53 (453)
.+.|.+|++..|++.++|+++.++... .+ .++ +.||..|++.++..
T Consensus 15 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~ 94 (389)
T PLN03168 15 PACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRH 94 (389)
T ss_pred CeEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHH
Confidence 367999999999999999998887521 11 123 47999999876321
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHHHHH
Q 012909 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (453)
Q Consensus 54 ---~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~AL~ 129 (453)
.+.+.+|+++|+++||+++|++++|||+||++|+|+. ..|+++.+|+++||+ ++.+ +++|++.||+|++.||.
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~-~~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~g~~~aL~ 171 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGV-NMPGADHALAKLLGL--KPTVKRVMMYQTGCFGGASVLR 171 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCC-CCccHHHHHHHHhCc--CCcceeeeeeCCccHHHHHHHH
Confidence 0136899999999999999999999999999999995 489999999999999 4554 58999999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeecccccccccc
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKP 185 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p 185 (453)
+|.++++++ +.++||||++|++ |+|+||++++.-..+.+....+... +...|
T Consensus 172 ~A~~~i~~~--~~~~VLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~~~p 247 (389)
T PLN03168 172 VAKDLAENN--KGARVLAVASEVTAVTYRAPSENHLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ETILP 247 (389)
T ss_pred HHHHHHHhC--CCCEEEEEEEehhhhhccCcccccHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eEEEc
Confidence 999999999 5599999999985 8888888753210011111111111 01112
Q ss_pred CC-CC-CCce-ecCc---chHH---HHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhh
Q 012909 186 NL-AS-EYPV-VDGK---LSQT---CYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDF 256 (453)
Q Consensus 186 ~~-~~-~~~~-vdG~---~s~~---~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~ 256 (453)
.. +. .+.. ..|. ++.. ...+.+..+.+.+.+ ..+....|+++|++||++.++++.
T Consensus 248 ~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~------~~~~~~~d~~~~v~Hqgg~~Il~~---------- 311 (389)
T PLN03168 248 ESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARK------CVGSPDWNEMFWAVHPGGPAILDQ---------- 311 (389)
T ss_pred CCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHH------hcCCCccccceEEecCCcHHHHHH----------
Confidence 10 00 0111 1111 1111 122223333333332 234545678999999999999877
Q ss_pred hccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcC
Q 012909 257 LRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS 336 (453)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~ 336 (453)
+++.|+++++ |.. .|+...+++|||+|||+++.|..++++ ++
T Consensus 312 --------------v~~~Lgl~~e---------k~~-------------~s~~vl~~yGNtSSaSv~~vL~~~~~~--~~ 353 (389)
T PLN03168 312 --------------VEAKLKLTKD---------KMQ-------------GSRDILSEFGNMSSASVLFVLDQIRQR--SV 353 (389)
T ss_pred --------------HHHHcCCCHH---------HHH-------------HHHHHHHHhCccHhhhHHHHHHHHHHH--Hh
Confidence 4556788886 222 233344899999999999999998864 22
Q ss_pred CCC--------CEEEEEEecchhhheeeEEEEec
Q 012909 337 LEG--------KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 337 ~~G--------d~ill~syGsG~~~~~~~l~~~~ 362 (453)
++| ++++|++||+|+++++.+++|..
T Consensus 354 ~~g~~~~~~g~~~~ll~afGpG~t~~~~llr~~~ 387 (389)
T PLN03168 354 KMGASTLGEGSEFGFFIGFGPGLTLEVLVLRAAA 387 (389)
T ss_pred hcCCCCCCCCccEEEEEEEcchhhhhhhhheecc
Confidence 332 89999999999999999999864
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=291.78 Aligned_cols=295 Identities=16% Similarity=0.224 Sum_probs=209.7
Q ss_pred eEEeEEEEEcCCceechhHHhhhhC----C-C-c--C-ee-----eEcccceEEeccC---C-C----------------
Q 012909 9 VGILALDIYFPPTCVLQEALEVHDG----V-S-K--G-KY-----TVGLGQDCMAFCS---E-V---------------- 54 (453)
Q Consensus 9 vgI~~i~~y~P~~~v~~~~l~~~~g----~-~-~--~-k~-----~~Gig~r~~av~~---~-~---------------- 54 (453)
+.|.+|++++|++.++|+++.++.. . + + . ++ ..||..|++.+.+ + .
T Consensus 17 ~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 96 (393)
T PLN03172 17 ATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQD 96 (393)
T ss_pred eEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHHH
Confidence 6799999999999999999888753 1 1 1 1 12 4799999986621 0 0
Q ss_pred ---CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee-EEeeCCcChhHHHHHHH
Q 012909 55 ---EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGTAALFN 130 (453)
Q Consensus 55 ---ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~-~~dv~~aC~gg~~AL~~ 130 (453)
+...+|+++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ ++.+. .+++..||+|++.||.+
T Consensus 97 ~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~ 173 (393)
T PLN03172 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--KPSVKRFMMYQQGCFAGGTVLRL 173 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-CchHHHHHHHHhCC--CCCceEEeeeCCchHHHHHHHHH
Confidence 1246999999999999999999999999999999976 89999999999999 56664 57889999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceec-c--Cceeeec---cccc
Q 012909 131 CVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFE-S--KLRGSHM---SHAY 180 (453)
Q Consensus 131 A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~-~--~~~~~~~---~~~~ 180 (453)
|.++++++ ++++||||++|.+ |+|+||++++.-..+ + .+.++.+ .+..
T Consensus 174 A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t~ 251 (393)
T PLN03172 174 AKDLAENN--AGSRVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDSD 251 (393)
T ss_pred HHHHHHcC--CCCeEEEEEEehhhhhhcccccccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCCc
Confidence 99999999 5599999999986 788888765321000 0 0111111 0000
Q ss_pred cccccCCCCCCceecC---cchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhh
Q 012909 181 DFYKPNLASEYPVVDG---KLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFL 257 (453)
Q Consensus 181 df~~p~~~~~~~~vdG---~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~ 257 (453)
+.+. ......| .++...+..+.......+.+.+ ++.+++..|+|+|++||++.++++.
T Consensus 252 ~~~~-----~~i~~~G~~~~l~~~vp~~~~~~i~~~~~~~L---~~~gl~~~di~~~~~Hqgg~~Il~~----------- 312 (393)
T PLN03172 252 GAID-----GHLREVGLTFHLLKDVPGLISKNIEKSLVEAF---APIGINDWNSIFWIAHPGGPAILDQ----------- 312 (393)
T ss_pred cccc-----ceEEcCCcEEEEechHHHHHHHHHHHHHHHHh---hhcCCCccccceEEecCCcHHHHHH-----------
Confidence 0000 0001112 1122222222222222222222 3456778999999999999999877
Q ss_pred ccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---cC
Q 012909 258 RNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE---KH 334 (453)
Q Consensus 258 ~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~---~~ 334 (453)
+++.|+++++ |+.+|+...+++|||+|+|++++|..+++. .+
T Consensus 313 -------------v~~~Lgl~~~----------------------~~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~g 357 (393)
T PLN03172 313 -------------VEIKLDLKEE----------------------KLRATRHVLSDYGNMSSACVLFILDEMRKKSIEEG 357 (393)
T ss_pred -------------HHHHcCCCHH----------------------HHHHHHHHHHHhCccHHhHHHHHHHHHHhhhhhcC
Confidence 4556688776 233444556899999999999999998742 24
Q ss_pred cCCCC---CEEEEEEecchhhheeeEEEEec
Q 012909 335 SSLEG---KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 335 ~~~~G---d~ill~syGsG~~~~~~~l~~~~ 362 (453)
++++| ++++|++||+|+++++.+++|.+
T Consensus 358 ~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 388 (393)
T PLN03172 358 KGSTGEGLEWGVLFGFGPGLTVETVVLHSVP 388 (393)
T ss_pred CCCCCCCcceEEEEEeCCcceeeeeeeEecc
Confidence 55555 88999999999999999999954
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=295.70 Aligned_cols=295 Identities=16% Similarity=0.233 Sum_probs=212.4
Q ss_pred eEEeEEEEEcCCceechhHHhhhhCC-------Cc-C-ee-----eEcccceEEeccCC----C----------------
Q 012909 9 VGILALDIYFPPTCVLQEALEVHDGV-------SK-G-KY-----TVGLGQDCMAFCSE----V---------------- 54 (453)
Q Consensus 9 vgI~~i~~y~P~~~v~~~~l~~~~g~-------~~-~-k~-----~~Gig~r~~av~~~----~---------------- 54 (453)
..|.+|++.+|++.++|+++.++... +. . ++ +.||..|++.+.+. .
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 67999999999999999998877521 11 1 22 47999998866211 0
Q ss_pred ---CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHHHHHH
Q 012909 55 ---EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALFN 130 (453)
Q Consensus 55 ---ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~AL~~ 130 (453)
+.+.+||++|+++||+++|++++|||+||++|+|+.+ .|+++.+|+++||+ ++.+ +++++..||+|++.||.+
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~-~Ps~a~~l~~~LGl--~~~~~r~~d~~~gC~G~~~aL~~ 177 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKMLGL--RPSVNRLMMYQQGCFAGGTVLRV 177 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCC-CChHHHHHHHHhCc--CcccHHHHhhcChhHHHHHHHHH
Confidence 1246799999999999999999999999999999976 89999999999998 4554 589999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeeccccccccccC
Q 012909 131 CVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN 186 (453)
Q Consensus 131 A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~ 186 (453)
|.++++++ +.++||||++|++ |+|+||++++.-.+.... ...........|.
T Consensus 178 A~~l~~~~--~~~~vLVV~~E~~S~~~~~~~~~~~~~~~~~~LFGDGAaAvVl~~~~~~~~~~~~--~~l~~~~~~~~p~ 253 (401)
T PLN03170 178 AKDLAENN--RGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPL--FQLVSASQTILPD 253 (401)
T ss_pred HHHHHHcC--CCCeEEEEEEehhhhccCCcccchhhhhhhhhhhhceeEEEEEecCCcccccCCc--eEEeeccceEecC
Confidence 99999998 5599999998874 888888876421000000 0000001111221
Q ss_pred CCC--CCc-eecC------cchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhh
Q 012909 187 LAS--EYP-VVDG------KLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFL 257 (453)
Q Consensus 187 ~~~--~~~-~vdG------~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~ 257 (453)
... .+. ..+| +.......+.+..+.+.++ .+.|++.+|+++|++||++.++++.
T Consensus 254 ~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L------~~~gl~~~di~~~v~Hqgg~~il~~----------- 316 (401)
T PLN03170 254 SEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAF------KPLGITDYNSIFWVAHPGGPAILDQ----------- 316 (401)
T ss_pred CcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHH------HhcCCCccccCeEEecCCcHHHHHH-----------
Confidence 100 011 1122 1121222233333334333 3446888999999999999999876
Q ss_pred ccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh---hcC
Q 012909 258 RNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH---EKH 334 (453)
Q Consensus 258 ~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~---~~~ 334 (453)
+++.++++++ |+.+|+.+.+++|||+|+|++++|..+++ +.+
T Consensus 317 -------------v~~~Lgl~~~----------------------~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~~g 361 (401)
T PLN03170 317 -------------VEAKVGLEKE----------------------RMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDG 361 (401)
T ss_pred -------------HHHHcCCChH----------------------HHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhhcC
Confidence 4455688876 23334455689999999999999999984 225
Q ss_pred cCCCC---CEEEEEEecchhhheeeEEEEec
Q 012909 335 SSLEG---KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 335 ~~~~G---d~ill~syGsG~~~~~~~l~~~~ 362 (453)
++++| ++++|++||+|+++++.+++|.+
T Consensus 362 ~~~~G~~~~~~ll~afGpG~t~~~~ll~~~~ 392 (401)
T PLN03170 362 QATTGEGFDWGVLFGFGPGLTVETVVLHSVP 392 (401)
T ss_pred CCCCCCCccEEEEEEeCchHhHHhHHheecc
Confidence 66677 89999999999999999999966
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=286.33 Aligned_cols=292 Identities=17% Similarity=0.146 Sum_probs=209.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCC------------------------CcCee--eEcccceEEeccC--------
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGV------------------------SKGKY--TVGLGQDCMAFCS-------- 52 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~------------------------~~~k~--~~Gig~r~~av~~-------- 52 (453)
++|+|.++++|+|++.|+|+++++.++. +.+++ ++||..|+++...
T Consensus 1 ~~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~ 80 (372)
T PRK07515 1 HNVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRM 80 (372)
T ss_pred CCcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCccccc
Confidence 3689999999999999999999876421 23344 4799988876421
Q ss_pred -------C-C--CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcCh
Q 012909 53 -------E-V--EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACY 122 (453)
Q Consensus 53 -------~-~--ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~ 122 (453)
+ . ....+|++.|++++|+++|+++++||.|+++|+++.+..|+.+..|++.||+ . ++++++..+|+
T Consensus 81 ~~~~~~r~~~~~~~~~~la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl---~-~~~~~v~~aCa 156 (372)
T PRK07515 81 RPRIPERSNDELSIQAEMGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGI---E-GFAFDMNVACS 156 (372)
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCC---C-CcEEEecchhH
Confidence 0 1 1346899999999999999999999999999988887889999999999998 2 57899999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------------ceeeeecCCCCce--eccCceeeecc-cccc
Q 012909 123 GGTAALFNCVNWVESASWDGRYGLVVCTDTA------------------AVAMLIGPDAPIA--FESKLRGSHMS-HAYD 181 (453)
Q Consensus 123 gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------AvA~Ll~~~~~l~--~~~~~~~~~~~-~~~d 181 (453)
|++.||..|.++|++|.. ++||||++|.+ |+|+||++.+.-. -...+.++... +..+
T Consensus 157 sg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d~~~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~ 234 (372)
T PRK07515 157 SATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRDRDSHFIFGDVATAVIVERADTATSAGGFEILGTRLFTQFSN 234 (372)
T ss_pred HHHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccCCCCCEEecCccEEEEEeeccccccCCCceEEEEEeeccccc
Confidence 999999999999999955 99999999985 8888887753200 00001111110 0001
Q ss_pred -------cc---ccCC---CCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHH
Q 012909 182 -------FY---KPNL---ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSF 248 (453)
Q Consensus 182 -------f~---~p~~---~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~ 248 (453)
+. .+.. ...+..++|....+.+...+..+.+..++ ++|++++|||+|++||++.+|.+...
T Consensus 235 ~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~------~~gl~~~dId~~~~Hq~~~~~~d~~~ 308 (372)
T PRK07515 235 NIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLA------ENGLTPADVKRFWLHQANINMNQLIG 308 (372)
T ss_pred ceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHH------HcCCCHHHCCEEEECCCCHHHHHHHH
Confidence 11 1100 00112346665544444444444444443 45699999999999999999988754
Q ss_pred HhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHH
Q 012909 249 ARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFAS 328 (453)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~s 328 (453)
+++ +|++.+. +|. ..+.+++|||+|||+|++|..
T Consensus 309 ~~l-----------------------lg~~~~~-------~~~----------------~~~~~~~GNt~sasi~~~L~~ 342 (372)
T PRK07515 309 KKV-----------------------LGRDATP-------EEA----------------PVILDEYANTSSAGSIIAFHK 342 (372)
T ss_pred HHh-----------------------ccCCCCh-------hhc----------------eEeHHhcCCchhhHHHHHHHH
Confidence 332 2332210 011 123489999999999999999
Q ss_pred HHhhcCcCCCCCEEEEEEecchhhheeeEEE
Q 012909 329 LLHEKHSSLEGKRVIMFSYGSGLTATMFSLQ 359 (453)
Q Consensus 329 ll~~~~~~~~Gd~ill~syGsG~~~~~~~l~ 359 (453)
++. ++++||+|+|++||+|++|++.+++
T Consensus 343 ~~~---~~~~Gd~vll~~~G~G~~~~~~ll~ 370 (372)
T PRK07515 343 HSD---DLAAGDLGVICSFGAGYSIGSVIVR 370 (372)
T ss_pred Hhc---cCCCCCEEEEEEecccHHHHHHHhc
Confidence 853 4689999999999999999988765
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=287.82 Aligned_cols=295 Identities=17% Similarity=0.227 Sum_probs=208.8
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhC------CCcC---ee-----eEcccceEEeccCC--C-----------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDG------VSKG---KY-----TVGLGQDCMAFCSE--V----------------- 54 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g------~~~~---k~-----~~Gig~r~~av~~~--~----------------- 54 (453)
.+.|.++++..|++.++|+++.++.. ..+. ++ +.||..|++.+++. .
T Consensus 16 ~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (391)
T PLN03173 16 PATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQ 95 (391)
T ss_pred CeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHH
Confidence 36799999999999999999887752 1121 12 47999998876311 0
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHHHHH
Q 012909 55 ----EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTAALF 129 (453)
Q Consensus 55 ----ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~AL~ 129 (453)
+.+.+||++|+++||+++|++|+|||+||++|+|+.+ .|+++.+|+++||+ ++.+ +++++..||+|++.||.
T Consensus 96 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~-~P~~a~~l~~~LGl--~~~~~~~~~~~~gC~g~~~aL~ 172 (391)
T PLN03173 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVD-MPGADYQLTKLLGL--RSSVKRFMMYQQGCFAGGTVLR 172 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCc-ccHHHHHHHHHhCC--CccceeeehhcCccHHHHHHHH
Confidence 1246999999999999999999999999999999976 79999999999999 5556 46788999999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceecc---Cceeee------c
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFES---KLRGSH------M 176 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~---~~~~~~------~ 176 (453)
+|.++++++ ++++||||++|.+ |+|+||+.++...++. .+.++. +
T Consensus 173 ~A~~~~~~~--~~~~vLVV~~E~~S~~~~~~~d~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t 250 (391)
T PLN03173 173 LAKDLAENN--KGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDS 250 (391)
T ss_pred HHHHHHHhC--CCCeEEEEEEehhhhhhCCccccchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCC
Confidence 999999998 5699999999875 7888887653211100 011111 1
Q ss_pred ccccc-ccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhh
Q 012909 177 SHAYD-FYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFND 255 (453)
Q Consensus 177 ~~~~d-f~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~ 255 (453)
.+.+. ..++. +.. ..+. +.........+..+.+.++ .+.|++.+|+|+|++||++.++++.
T Consensus 251 ~~~~~~~i~~~-G~~-~~l~-~~vp~~~~~~~~~~i~~~L------~~~gl~~~di~~~v~Hqgg~~Il~~--------- 312 (391)
T PLN03173 251 DGAIDGHLREV-GLT-FHLL-KDVPGLISKNVEKSLTEAF------KPLGISDWNSLFWIAHPGGPAILDQ--------- 312 (391)
T ss_pred ccceeeEEEcC-ceE-EEEe-cHHHHHHHHHHHHHHHHHH------HhcCCCccccCeEEECCCcHHHHHH---------
Confidence 11110 00111 100 0011 1111111223333333333 3446888999999999999999877
Q ss_pred hhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---
Q 012909 256 FLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE--- 332 (453)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~--- 332 (453)
+++.||+++++ +.+|+...+++|||+|+|+++.|..++++
T Consensus 313 ---------------v~~~LgL~~ek----------------------l~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~ 355 (391)
T PLN03173 313 ---------------VEAKLALKPEK----------------------LRATRHVLSEYGNMSSACVLFILDEMRKKSAE 355 (391)
T ss_pred ---------------HHHHcCCChHH----------------------HHHHHHHHHHhCcchhhHHHHHHHHHHHhhhh
Confidence 45567888762 22333445899999999999999999963
Q ss_pred cCcCC--CC-CEEEEEEecchhhheeeEEEEec
Q 012909 333 KHSSL--EG-KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 333 ~~~~~--~G-d~ill~syGsG~~~~~~~l~~~~ 362 (453)
.+... +| ++++|++||+|+++++.+++|..
T Consensus 356 ~~~~~~g~~~~~~l~~afGpG~t~e~~ll~~~~ 388 (391)
T PLN03173 356 DGLKSTGEGLEWGVLFGFGPGLTVETVVLHSVA 388 (391)
T ss_pred cCCCCCCCCcceEEEEEeCchHHHHHHHHhhcc
Confidence 12222 33 88999999999999999998754
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=287.16 Aligned_cols=303 Identities=19% Similarity=0.293 Sum_probs=213.5
Q ss_pred CCCceeEEeEEEEEcCCc--eechhHHhhhh---C-CCcC------ee--eEcccceEEeccC------C-------CCC
Q 012909 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKG------KY--TVGLGQDCMAFCS------E-------VED 56 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------~-------~ed 56 (453)
.|+..|.+...+.|.|+. +++.+.+.+.. | .+++ |+ +.|+|++ ..+|+ + .+.
T Consensus 93 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~-t~~p~~~~~~~~~~~~~~~~~e 171 (502)
T PLN02377 93 TRPRPVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGED-TYVPEAMHYIPPRPSMAAAREE 171 (502)
T ss_pred cCCCCEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCc-cccCchhccCCccchHHHHHHH
Confidence 467889999999999964 77888766553 2 2222 12 5799984 33441 1 245
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v 135 (453)
+.+++..|+++||+++|++|+|||.||+ |+|++...|+++..|+++||+ ++++.++|++ .||+||+.||++|.+++
T Consensus 172 a~~l~~~A~~~aL~kaGi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGl--r~~v~afdL~gmGCsggl~aL~lA~~ll 248 (502)
T PLN02377 172 AEQVMFGALDNLFANTNVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKL--RGNIRSFNLGGMGCSAGVIAVDLAKDML 248 (502)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCC--CCCCeEEecccchhhHHHHHHHHHHHHH
Confidence 7899999999999999999999999988 899988899999999999999 6699999998 79999999999999999
Q ss_pred HhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCce----ecc-Cceeeeccc---cccc-cc
Q 012909 136 ESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPIA----FES-KLRGSHMSH---AYDF-YK 184 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l~----~~~-~~~~~~~~~---~~df-~~ 184 (453)
+++ ++++||||++|.. |+|+||++.+.-. ... ++..++... .++. +.
T Consensus 249 ~~~--~~~~aLVVstE~~S~~~~~~d~~s~lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~i~~ 326 (502)
T PLN02377 249 QVH--RNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRCVYQ 326 (502)
T ss_pred HcC--CCCEEEEEEEeccccccCCCCCccccccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccceeee
Confidence 999 5599999999985 8899998742100 000 122222221 1221 11
Q ss_pred c---CCC------CCCceecCc-----------chH----HHHHHHHHHHHHHHHHHHhhhhcCC-CCccCccEEEecCc
Q 012909 185 P---NLA------SEYPVVDGK-----------LSQ----TCYLMALDSCYKYFCQKFEKLEGRQ-FSMLDVDYFVFHSP 239 (453)
Q Consensus 185 p---~~~------~~~~~vdG~-----------~s~----~~y~~al~~~~~~~~~~~~~~~~~~-~~~~d~d~~v~H~p 239 (453)
| .++ .+.+.+.|+ ... +.+..+.....+.+.+.+ +..+ ...+|||+||+||+
T Consensus 327 ~~d~~G~~g~~ls~dl~~v~g~~l~~~i~~lg~~vl~~se~~~~~a~~~~~~~~~~~l---~~~~p~~~~didhf~iHqg 403 (502)
T PLN02377 327 EQDDAGKTGVSLSKDLMAIAGEALKTNITTLGPLVLPISEQLLFFATLVVKKLFNKKM---KPYIPDFKLAFDHFCIHAG 403 (502)
T ss_pred ccccCCCCCCCCCcchhhHhhHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH---hhccCCcHhhcCEEEECCC
Confidence 2 111 112223332 110 001111111111111122 1111 34689999999999
Q ss_pred chHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCcccc
Q 012909 240 YNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYT 319 (453)
Q Consensus 240 ~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~t 319 (453)
+.++++. +++.++++++ ++++ +....+++|||+|
T Consensus 404 gr~IId~------------------------v~k~LgL~~~------~~e~----------------sr~tL~r~GNTSS 437 (502)
T PLN02377 404 GRAVIDE------------------------LEKNLQLLPV------HVEA----------------SRMTLHRFGNTSS 437 (502)
T ss_pred CHHHHHH------------------------HHHHcCCCcc------cchH----------------HHHHHHhcCCchh
Confidence 9999876 4456677764 1223 3334489999999
Q ss_pred chHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 320 ASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 320 aSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
+|+|+.|..++++ +++++||+|++++||+|+++++.++++-.
T Consensus 438 aSI~~aL~~~~~~-grik~Gd~VlliaFGsGf~~~s~v~~~~~ 479 (502)
T PLN02377 438 SSIWYELAYIEAK-GRMRKGNRVWQIAFGSGFKCNSAVWEALR 479 (502)
T ss_pred hHHHHHHHHHHHc-CCCCCCCeEEEEEEccccEeeeEEEEEec
Confidence 9999999999987 88999999999999999999999999865
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=279.38 Aligned_cols=302 Identities=19% Similarity=0.282 Sum_probs=210.9
Q ss_pred CCCceeEEeEEEEEcCCc--eechhHHhhhh---C-CCcC------ee--eEcccceEEeccC------C-------CCC
Q 012909 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKG------KY--TVGLGQDCMAFCS------E-------VED 56 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------~-------~ed 56 (453)
.|+..|.+...++|-|+. +++.+.+.+.. | .+++ |+ +.|+|++.. +|+ + .+.
T Consensus 109 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty-~P~~~~~~~~~~~~~~~r~e 187 (521)
T PLN02854 109 KRSKPVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETY-LPRGITSRPPNLCMEEARAE 187 (521)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-cCccccCCCCcchHHHHHHH
Confidence 467889999999999864 77777666553 3 2332 11 579998764 222 1 123
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v 135 (453)
+......|++++|+++|++|+|||.||++ +|+++..|++++.|+++||+ ..++.++|++ .||+||+.||.+|.+++
T Consensus 188 a~~v~~~~~~~lL~kaGi~p~dID~LIv~-cS~~~p~PSlAa~I~n~LGl--r~~i~afdLsgmGCSggl~aL~lA~~lL 264 (521)
T PLN02854 188 AEAVMFGALDSLFSKTGVKPRDIGILIVN-CSLFNPTPSLSAMIVNHYKL--RTDIKSYNLGGMGCSAGLISIDLANDLL 264 (521)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCC--CCCceEEecccchhhhHHHHHHHHHHHH
Confidence 45666788999999999999999999984 77887899999999999999 6699999998 89999999999999999
Q ss_pred HhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCc----eecc-Cceeeeccc---ccc-ccc
Q 012909 136 ESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPI----AFES-KLRGSHMSH---AYD-FYK 184 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l----~~~~-~~~~~~~~~---~~d-f~~ 184 (453)
+++ ++++||||++|.+ |+|+||++.+.- .++. +...++... .++ .+.
T Consensus 265 ~~~--~~~~aLVVstE~~S~~~y~g~Drs~lv~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~~v~t~~~ad~~~~~~i~~ 342 (521)
T PLN02854 265 KAN--PNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSNKARDRKRSKYQLVHTVRTHKGADDKNYNCVYQ 342 (521)
T ss_pred HhC--CCCeEEEEEEeeeecCCCCCCchhhhcceeeeccceeEEEEecccccccccchheeeEEEEEEeeCCCccCeEEe
Confidence 999 5599999999984 888899874310 0000 012222211 111 111
Q ss_pred cC--CC-------CCCc-----------eecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCc------cCccEEEecC
Q 012909 185 PN--LA-------SEYP-----------VVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM------LDVDYFVFHS 238 (453)
Q Consensus 185 p~--~~-------~~~~-----------~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~------~d~d~~v~H~ 238 (453)
|. .+ .+.+ .+.|+.... +.+.+.-......+++ .+.+++. .||||||+||
T Consensus 343 ~~d~~G~~g~~lsk~l~~va~~~l~~~i~~~g~~Vl~-~se~~~f~~~~i~~~L---~~~gl~~~~pd~~~didhf~iHq 418 (521)
T PLN02854 343 REDDKGTIGVSLARELMAVAGDALKTNITTLGPLVLP-LSEQFMFFVTLVRRKL---LKAKVKPYIPDFKLAFEHFCIHA 418 (521)
T ss_pred ccCCCCcccccccccccchhhhhhhhhhhhccccccc-hHHHHHHHHHHHHHHH---HHcCCCccCCcccccCcEEEECC
Confidence 21 01 0111 122332211 0111110111222222 2334554 6899999999
Q ss_pred cchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccc
Q 012909 239 PYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMY 318 (453)
Q Consensus 239 p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~ 318 (453)
++.++++. +++.++++++ +++++....+++|||+
T Consensus 419 ggr~IId~------------------------v~k~LgL~~~----------------------~~e~sr~tL~rfGNTS 452 (521)
T PLN02854 419 GGRAVLDE------------------------LQKNLQLSDW----------------------HMEPSRMTLHRFGNTS 452 (521)
T ss_pred CCHHHHHH------------------------HHHHcCCCcc----------------------cccchHHHhhhcCChH
Confidence 99999876 4556677753 2234444458999999
Q ss_pred cchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 319 TASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 319 taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
|+|+|+.|..+.++ |++++||+|++++||+|++|++.+++|-.
T Consensus 453 SASI~~~L~~~~~k-Grik~GD~Vl~iaFGsGft~~sav~~~~~ 495 (521)
T PLN02854 453 SSSLWYELAYTEAK-GRVSAGDRVWQIAFGSGFKCNSAVWKALR 495 (521)
T ss_pred hhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhhheeeEEec
Confidence 99999999999987 88999999999999999999999999876
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=280.35 Aligned_cols=300 Identities=20% Similarity=0.295 Sum_probs=210.5
Q ss_pred CCCceeEEeEEEEEcCCc--eechhHHhhhh------C-CCcC---------ee--eEcccceEEeccCCC---------
Q 012909 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD------G-VSKG---------KY--TVGLGQDCMAFCSEV--------- 54 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~--~v~~~~l~~~~------g-~~~~---------k~--~~Gig~r~~av~~~~--------- 54 (453)
.|+..|.+...+.|-|+. +++.+.+.+.. | .+.+ |+ ++|||+++.. |...
T Consensus 63 ~~~~~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~~-p~~~~~~~~~~~~ 141 (478)
T PLN02932 63 TRPKPVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETYI-PEGLQCLPLQQNL 141 (478)
T ss_pred cCCCcEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCceee-ccccccCCHHHHH
Confidence 568889999999999964 77777766543 2 2222 12 5799998864 3321
Q ss_pred ----CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHH
Q 012909 55 ----EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALF 129 (453)
Q Consensus 55 ----ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~ 129 (453)
+.+.+|+..|+++||+++|++|+|||.||++|+++. ..|+++..|+++||+ ++++.+||++ .||+||+.||.
T Consensus 142 ~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGl--r~~i~~fdL~gmGCSggl~aL~ 218 (478)
T PLN02932 142 AVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFN-PTPSLSSILVNKFKL--RDNIKSLNLGGMGCSAGVIAID 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCC--CCCceEEEeccchhhhHHHHHH
Confidence 247899999999999999999999999999999986 799999999999999 6789999998 89999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCC------ceeccCceeeecccccc
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAP------IAFESKLRGSHMSHAYD 181 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~------l~~~~~~~~~~~~~~~d 181 (453)
+|.++++++ ++++||||++|.+ |+|+||+..+. ..+.. ...++.....+
T Consensus 219 lA~~ll~~~--~~~~aLVVstE~~S~~~~~~d~r~~l~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~~-~v~t~~~ad~~ 295 (478)
T PLN02932 219 AAKSLLQVH--RNTYALVVSTENITQNLYLGNNKSMLVTNCLFRIGGAAILLSNRSRDRKRAKYELVH-TVRVHTGADDR 295 (478)
T ss_pred HHHHHHHcC--CCCeEEEEEEeecccccCCCcchhhhccceeecccceEEEEecccccccCcceEEEe-eeeeeeccCCC
Confidence 999999999 5599999999986 88999987541 01110 11222211111
Q ss_pred c----cccC--CC-------CCCcee-----------cCcchH---HHHHHHHHHHHHHHHHHHhhhhcCCCCc---cCc
Q 012909 182 F----YKPN--LA-------SEYPVV-----------DGKLSQ---TCYLMALDSCYKYFCQKFEKLEGRQFSM---LDV 231 (453)
Q Consensus 182 f----~~p~--~~-------~~~~~v-----------dG~~s~---~~y~~al~~~~~~~~~~~~~~~~~~~~~---~d~ 231 (453)
. +.+. .| .+.|.+ .|+... ..+..++....+.+.+.. ..+... .+|
T Consensus 296 ~~~~v~~~~d~~G~~g~~Lsk~lp~~~~~al~~ni~~~~p~v~p~~e~~~~~~~~~~~~~~k~~----~~~~~~~~~~~i 371 (478)
T PLN02932 296 SYECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLPLSEKFHFFVRFVKKKFFNPK----LKHYIPDFKLAF 371 (478)
T ss_pred ccccceeecccCCcceeeECccchHHHHHHHhhhhhccccccccchhhhHHHHHHhHHHHHHHH----hhcCcHhHHhhh
Confidence 1 1111 00 011111 111110 111112222222221110 011222 689
Q ss_pred cEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccc
Q 012909 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 311 (453)
Q Consensus 232 d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 311 (453)
||||+||++.++++. +++.+|++++ ++++ |....
T Consensus 372 d~f~iHqggr~IIda------------------------v~k~LgL~~~------~~e~----------------s~~tL 405 (478)
T PLN02932 372 EHFCIHAGGRALIDE------------------------MEKNLHLTPL------DVEA----------------SRMTL 405 (478)
T ss_pred ceEEEccCCHHHHHH------------------------HHHHcCCChH------HHHH----------------HHHHH
Confidence 999999999999876 4556688774 2333 33344
Q ss_pred cccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 312 KQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 312 ~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
+++|||+|+|+|+.|+.+.++ +++++||+|++++||+|+++++.+++.-
T Consensus 406 ~rfGNTSSaSI~~~L~~~ea~-grik~Gd~vl~iaFGsGf~~~s~vw~~~ 454 (478)
T PLN02932 406 HRFGNTSSSSIWYELAYTEAK-GRMKKGDRIWQIALGSGFKCNSSVWVAL 454 (478)
T ss_pred HHhCChhhhHHHHHHHHHHHc-CCCCCCCEEEEEEEeccHHHHHHHHHHh
Confidence 899999999999999999887 7889999999999999999998886643
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=272.30 Aligned_cols=296 Identities=17% Similarity=0.264 Sum_probs=205.9
Q ss_pred CCCceeEEeEEEEEcCCc--eechhHHhhhh---C-CCcC------ee--eEcccceEEeccC------C-------CCC
Q 012909 4 WHPKNVGILALDIYFPPT--CVLQEALEVHD---G-VSKG------KY--TVGLGQDCMAFCS------E-------VED 56 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~--~v~~~~l~~~~---g-~~~~------k~--~~Gig~r~~av~~------~-------~ed 56 (453)
.|+..|.+...+.|-|+. +++.+.+.+.. | .+++ |+ +.|+|++.. +|+ + .+.
T Consensus 97 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~-~p~~~~~~~~~~~~~~~~~E 175 (511)
T PLN02192 97 TRPRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTY-LPEAVLNVPPNPCMAEARKE 175 (511)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccc-CChhhccCCCCccHHHHHHH
Confidence 467889999999999965 67777766653 2 2322 11 579998764 221 1 234
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWV 135 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v 135 (453)
+..+...|+++||+++|++|+|||.||++ ++++...|++++.|+++||+ ..++.+||++ .||+||+.||++|.+++
T Consensus 176 a~~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGl--r~~i~afdLsgmGCSggl~aLdlA~~lL 252 (511)
T PLN02192 176 AETVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKL--RGNILSYNLGGMGCSAGLISIDLAKHLL 252 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCC--CCCceEEEcccchhhhHHHHHHHHHHHH
Confidence 67889999999999999999999999987 56777899999999999998 5689999998 79999999999999999
Q ss_pred HhCCCCCCeEEEEEeecc----------------------ceeeeecCCCC------ceeccCceeeecccccccc----
Q 012909 136 ESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAP------IAFESKLRGSHMSHAYDFY---- 183 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~------l~~~~~~~~~~~~~~~df~---- 183 (453)
+++ ++++||||++|.+ |+|+||++.+. ..+.. ...++.....+.|
T Consensus 253 ~a~--~~~~aLVVstE~~S~n~y~g~drs~lv~n~LFgDGAaAvLLs~~~~~~~~~k~~L~~-~vrt~~~~dd~~~~~v~ 329 (511)
T PLN02192 253 QVH--PNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRSDRRRSKYQLVH-TVRTHKGADDKCFACVT 329 (511)
T ss_pred HcC--CCCeEEEEEEEeccccCCCCCCHHHHhccccccccceEEEEeccccccccccceeee-eEEEEecCChhhcccee
Confidence 999 5599999999985 88999987431 01110 0112221111111
Q ss_pred ccCCC---------CCCceecCcchHHHH----------------------HHHHHHHHHHHHHHHhhhhcCCCCccCcc
Q 012909 184 KPNLA---------SEYPVVDGKLSQTCY----------------------LMALDSCYKYFCQKFEKLEGRQFSMLDVD 232 (453)
Q Consensus 184 ~p~~~---------~~~~~vdG~~s~~~y----------------------~~al~~~~~~~~~~~~~~~~~~~~~~d~d 232 (453)
.|... .+.+.+-|....... .+.++...+.+...+ ..+||
T Consensus 330 ~~ed~~g~~g~~Lskdl~~vag~al~~ni~~l~p~vlp~~e~~~~~~~m~gr~vfk~~~~~~~p~~---------~~~Id 400 (511)
T PLN02192 330 QEEDSAGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKLKPYIPDF---------KLAFE 400 (511)
T ss_pred cccccccceeeEecchhhhhhhhhhhhhhhhcccccCccchhhceeEEEcChHHHHHHhhhccHHH---------HHhhc
Confidence 11000 000111111000000 000000011111111 24799
Q ss_pred EEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccccc
Q 012909 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPK 312 (453)
Q Consensus 233 ~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~ 312 (453)
+||+||++.++++. +++.+|++++ ++++... ..+
T Consensus 401 hf~iHqggr~IId~------------------------v~k~LgL~~~------~~e~sr~----------------tL~ 434 (511)
T PLN02192 401 HFCIHAGGRAVLDE------------------------LEKNLQLSDW------HMEPSRM----------------TLY 434 (511)
T ss_pred eEeeccCCHHHHHH------------------------HHHHcCCCch------hhhHHHH----------------HHh
Confidence 99999999999876 4456677763 2233333 348
Q ss_pred ccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 313 QVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 313 ~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
++|||+|+|+|+.|+.+.++ +++++||+|++++||+|+++++.+++|-.
T Consensus 435 rfGNTSSaSI~~aL~~~eak-grik~GDrVl~iaFGsGf~~~sav~~~~~ 483 (511)
T PLN02192 435 RFGNTSSSSLWYELAYSEAK-GRIKKGDRTWQIAFGSGFKCNSAVWKALR 483 (511)
T ss_pred HcCChHHhHHHHHHHHHHHc-CCCCCCCEEEEEEEcchHhhhhhheeeec
Confidence 99999999999999999987 78999999999999999999999999865
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=245.87 Aligned_cols=293 Identities=17% Similarity=0.239 Sum_probs=214.4
Q ss_pred EEeEEEEEcCCceechhHHhhhhCC----C-cCe----e--eEcccceEEeccCC---------------CCCHHHHHHH
Q 012909 10 GILALDIYFPPTCVLQEALEVHDGV----S-KGK----Y--TVGLGQDCMAFCSE---------------VEDVISMSLT 63 (453)
Q Consensus 10 gI~~i~~y~P~~~v~~~~l~~~~g~----~-~~k----~--~~Gig~r~~av~~~---------------~ed~~~la~~ 63 (453)
-|.+++.++|++.++|.|+...+-. + -+. | ..+|..|+...|.+ -|.++.|+++
T Consensus 3 ~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v~ 82 (356)
T COG3424 3 VIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGVD 82 (356)
T ss_pred eeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHHH
Confidence 5899999999999999876655321 1 111 1 23455555443321 2467899999
Q ss_pred HHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHHHHHHHHHHHhCCCCC
Q 012909 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCVNWVESASWDG 142 (453)
Q Consensus 64 Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~AL~~A~~~v~sg~~~~ 142 (453)
|.++||+..++.|+|||+|+++|+|+.- .|++-.+|+.+||+ ++++..+.+ ..||++|.+||..|.+++++. |.
T Consensus 83 a~r~aL~~~~l~pedId~vv~vtsTG~~-~Ps~dari~~~Lgl--~p~~~Rvpv~glGCaaga~glara~~y~ra~--P~ 157 (356)
T COG3424 83 ALRRALDGSPLRPEDIDAVVTVTSTGLA-TPSLDARIVGELGL--SPDTRRVPVWGLGCAAGAAGLARARDYCRAA--PD 157 (356)
T ss_pred HHHHHhccCCCCHHHCcEEEEEeecccc-CCChhHHHHhhcCC--CCccceeeeecchhhhhhhHHHHHHHHHhhC--cc
Confidence 9999999999999999999999999985 89999999999999 789988888 589999999999999999999 66
Q ss_pred CeEEEEEeecc-----------------------ceeeeecCCCCc----eeccCceeeeccccccc-----cccCCCCC
Q 012909 143 RYGLVVCTDTA-----------------------AVAMLIGPDAPI----AFESKLRGSHMSHAYDF-----YKPNLASE 190 (453)
Q Consensus 143 ~~aLVv~~d~~-----------------------AvA~Ll~~~~~l----~~~~~~~~~~~~~~~df-----~~p~~~~~ 190 (453)
.+|||||.|.| ++|+|++.+.+. ...+.+.++.+.-..|- |.-. ...
T Consensus 158 ~~vlvV~vELCSLt~~~~d~t~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~-d~G 236 (356)
T COG3424 158 ANVLVVCVELCSLTYVFADDTKSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVG-DQG 236 (356)
T ss_pred ceEEEEEeeeeeeeeecCCCCcccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeec-CCc
Confidence 99999999998 777777766431 11222333332211110 0000 011
Q ss_pred CceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhh
Q 012909 191 YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEK 270 (453)
Q Consensus 191 ~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~ 270 (453)
+-.+-.+.........+......++... +++.+||+.|+.|..++|++++
T Consensus 237 ~~~vlSrdlp~lIe~~l~~~V~~fL~~~------~ls~~dI~~w~~HPGG~KVida------------------------ 286 (356)
T COG3424 237 LKVVLSRDLPNLIESYLAPNVTTFLATH------GLSIEDIEAWVVHPGGPKVIDA------------------------ 286 (356)
T ss_pred EEEEEcCchhHHHHHHhhhhHHHHHHHc------CCchhhhceeeeCCCCchHHHH------------------------
Confidence 1111111111111233444455555443 5999999999999999999877
Q ss_pred ccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecch
Q 012909 271 LAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350 (453)
Q Consensus 271 l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG 350 (453)
.++.||++++ +++.|+..++++|||.|||++..|-..+++. .++|.+.+|+++|+|
T Consensus 287 ~~~sLgls~e----------------------~l~~s~~~L~~~GNMSSatvLfVL~d~l~~~--~~~g~~Gl~~A~GPG 342 (356)
T COG3424 287 YEESLGLSPE----------------------ALELSWDVLREYGNMSSATVLFVLEDTLQKA--PKSGSRGLMFAMGPG 342 (356)
T ss_pred HHHhcCCCHH----------------------HHHHHHHHHHHhCCccchhhHHHHHHHHHhc--CCCCcceeeeecCCc
Confidence 3456788876 2345667779999999999999999999983 579999999999999
Q ss_pred hhheeeEEEEec
Q 012909 351 LTATMFSLQLQE 362 (453)
Q Consensus 351 ~~~~~~~l~~~~ 362 (453)
+++|..+++|..
T Consensus 343 f~sElvL~~w~~ 354 (356)
T COG3424 343 FCSELVLLDWEG 354 (356)
T ss_pred ceeeeeeEEeec
Confidence 999999999975
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=254.42 Aligned_cols=305 Identities=17% Similarity=0.258 Sum_probs=204.3
Q ss_pred CCCceeEEeEEEEEcCC--ceechhHHhhhh---C-CCcCe------e--eEcccceEEe---------ccC--CCCCHH
Q 012909 4 WHPKNVGILALDIYFPP--TCVLQEALEVHD---G-VSKGK------Y--TVGLGQDCMA---------FCS--EVEDVI 58 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~--~~v~~~~l~~~~---g-~~~~k------~--~~Gig~r~~a---------v~~--~~ed~~ 58 (453)
.|+..|.+...+.|-|+ ++++.+.+.+.. | .+.+- + +.|||+.... .+. +.....
T Consensus 55 ~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~ 134 (466)
T PLN00415 55 TRSKPVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHES 134 (466)
T ss_pred cCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHH
Confidence 46788999999999985 467777665442 2 12211 1 3566654321 111 233456
Q ss_pred HHHHH-HHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCC-cChhHHHHHHHHHHHHH
Q 012909 59 SMSLT-VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN-ACYGGTAALFNCVNWVE 136 (453)
Q Consensus 59 ~la~~-Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~-aC~gg~~AL~~A~~~v~ 136 (453)
+|+.. |++++|+++|++|+|||.||+ ++|+....|+.+..|+++||+ ++++.++++.+ ||+||+.||..|.++++
T Consensus 135 em~i~~A~~~aL~~aGi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGL--r~~v~~~dL~gmGCsggv~aL~lA~~ll~ 211 (466)
T PLN00415 135 ELVIFGALNSLFKKTGIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKL--KTDVKTYNLSGMGCSAGAISVDLATNLLK 211 (466)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCC--CCCceEEEeccccchHHHHHHHHHHHHHH
Confidence 77766 778999999999999999985 577876789999999999999 67999999985 99999999999999999
Q ss_pred hCCCCCCeEEEEEeecc----------------------ceeeeecCCCCc----eecc-Cceeeeccccccccc-----
Q 012909 137 SASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPI----AFES-KLRGSHMSHAYDFYK----- 184 (453)
Q Consensus 137 sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l----~~~~-~~~~~~~~~~~df~~----- 184 (453)
++ ++++||||++|.+ |+|+||+.++.- .++. .+..+++.+..+-|.
T Consensus 212 a~--~~~~aLVVs~E~~S~~~~~~~dr~~lv~n~LFgDGAAAvlLs~~~~~~~~~~~~L~~~vrt~~~~~d~~~~~~~~~ 289 (466)
T PLN00415 212 AN--PNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQDRVRSKYELTHIVRTHKGSSDKHYTCAEQK 289 (466)
T ss_pred hC--CCCEEEEEEEecccccccCCCcHhHhccceeecccceEEEEecCcccccCccceeeeEEEecCCCChhhhcceeee
Confidence 99 6699999999985 888999875320 1110 112222221111111
Q ss_pred cCCCCCCc-eecCcchHHHHHHHHHHHHHHHH------------------HHHhhhhcCCCCccC----ccEEEecCcch
Q 012909 185 PNLASEYP-VVDGKLSQTCYLMALDSCYKYFC------------------QKFEKLEGRQFSMLD----VDYFVFHSPYN 241 (453)
Q Consensus 185 p~~~~~~~-~vdG~~s~~~y~~al~~~~~~~~------------------~~~~~~~~~~~~~~d----~d~~v~H~p~~ 241 (453)
-+ ...+. ..=.+.....--+++......+. ++..+ .+......| +++||+|+++.
T Consensus 290 ~d-~~G~~gv~Lsk~lp~va~~~l~~ni~~l~p~vlp~~e~~~~~~~~i~~~~~~-~~~~~~~pd~~~~~~hf~iHpGGr 367 (466)
T PLN00415 290 ED-SKGIVGVALSKELTVVAGDTLKTNLTALGPLVLPLSEKLRFILFLVKSKLFR-LKVSPYVPDFKLCFKHFCIHAGGR 367 (466)
T ss_pred ec-CCCcceEEEChHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhh-ccCCCCCCCccccceeEEecCCcH
Confidence 11 00000 00011111111122222221111 11100 000111123 88999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccch
Q 012909 242 KLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTAS 321 (453)
Q Consensus 242 km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taS 321 (453)
++++. +++.|+++++ ++++|+...+++|||+|+|
T Consensus 368 aVLda------------------------ve~~LgL~~~----------------------~le~Sr~vL~r~GN~SSsS 401 (466)
T PLN00415 368 ALLDA------------------------VEKGLGLSEF----------------------DLEPSRMTLHRFGNTSSSS 401 (466)
T ss_pred HHHHH------------------------HHHHcCCCHH----------------------HHHHHHHHHHHhCCchhhh
Confidence 98876 4556677765 4567778889999999999
Q ss_pred HHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 322 LYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 322 l~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
++..|..+... ++.++||++++++||+|++++..++++-.
T Consensus 402 V~yvL~~~~~~-~~~~~Gdrvl~iaFGpGf~~es~v~~~~~ 441 (466)
T PLN00415 402 LWYELAYVEAK-CRVKRGDRVWQLAFGSGFKCNSIVWRALR 441 (466)
T ss_pred HHHHHHHHHhh-ccCCCCCEEEEEEEcCcchhhHhHHHHhc
Confidence 99999999877 67789999999999999999999988755
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-24 Score=205.95 Aligned_cols=229 Identities=15% Similarity=0.095 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVE 136 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~ 136 (453)
..+|+.+|++++|+++|+++++||.|+++++++....|+.+.+|+..+|+ . +.+++++.++|++++.||..|.++|+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~--~-~~~~~~i~~~C~s~~~al~~A~~~i~ 83 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI--S-GGPAYSVNQACATGLTALALAVQQVQ 83 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC--C-CCCcceeccHhHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999987689999999999998 3 88999999999999999999999999
Q ss_pred hCCCCCCeEEEEEeecc-----ceeeeecCCCCc-eec--c--CceeeeccccccccccCCCCCCceecCcchHHHHHHH
Q 012909 137 SASWDGRYGLVVCTDTA-----AVAMLIGPDAPI-AFE--S--KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMA 206 (453)
Q Consensus 137 sg~~~~~~aLVv~~d~~-----AvA~Ll~~~~~l-~~~--~--~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~a 206 (453)
+|.. ++|||+++|.. |+|+||++.+.. ... + .+.+...... +. ...+ .. +...
T Consensus 84 ~g~~--~~~lv~~~e~~~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~-----~~--~~~~----~~----~~~~ 146 (254)
T cd00327 84 NGKA--DIVLAGGSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFD-----GA--SMVP----AV----SGEG 146 (254)
T ss_pred CCCC--CEEEEEecceeeecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCC-----CC--CCCC----CC----ChHH
Confidence 9965 99999999987 889999876321 000 0 0111111110 10 0000 01 2334
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccch
Q 012909 207 LDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286 (453)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~ 286 (453)
+.++.+.++++. ++.++|+|++++|+++.++.....+.+.. +.+
T Consensus 147 ~~~~i~~~l~~a------g~~~~did~~~~h~~~~~~~~~~~~~~~~------------------------~~~------ 190 (254)
T cd00327 147 LARAARKALEGA------GLTPSDIDYVEAHGTGTPIGDAVELALGL------------------------DPD------ 190 (254)
T ss_pred HHHHHHHHHHHc------CCCHHHCCEEEccCCcCccccHHHHHHHH------------------------HHh------
Confidence 445555555443 58899999999999999988774443321 100
Q ss_pred hHHHHHHHHHHHHhhhhcC--CCcccccccCccccchHHHHHHHHHhhcCcCC-------CCCEEEEEEecchhhheeeE
Q 012909 287 DLEKASQQVAKQLYDLKVQ--PSTLIPKQVGNMYTASLYAAFASLLHEKHSSL-------EGKRVIMFSYGSGLTATMFS 357 (453)
Q Consensus 287 ~~~k~~~~~~~~~~~~~~~--~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~-------~Gd~ill~syGsG~~~~~~~ 357 (453)
+.. +......++||+++||.++.|+.++.. .+.. +|++++++++|.|.++++.+
T Consensus 191 ----------------~~~~~~~~~~~~~~G~~~~as~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~Gg~~~~~~ 253 (254)
T cd00327 191 ----------------GVRSPAVSATLIMTGHPLGAAGLAILDELLLM-LEHEFIPPTPREPRTVLLLGFGLGGTNAAVV 253 (254)
T ss_pred ----------------CCCCCceeccccccccchHHHHHHHHHHHHHH-HhCCCcCCCCCCcCEEEEeeEcCCCcceEEE
Confidence 010 122334799999999999999999876 3443 79999999999999998865
Q ss_pred E
Q 012909 358 L 358 (453)
Q Consensus 358 l 358 (453)
+
T Consensus 254 l 254 (254)
T cd00327 254 L 254 (254)
T ss_pred C
Confidence 3
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=184.98 Aligned_cols=231 Identities=14% Similarity=0.108 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHcCCC----cCCcCEEEEEcccCCCC---------------------CccHHHHHHHHhcccCCCC
Q 012909 57 VISMSLTVVTSLLEKYKID----PTQIGRLEVGSETVIDK---------------------SKSIKTFLMQIFEKYGNTD 111 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~----~~~Id~li~~t~s~~~~---------------------~~~~a~~l~~~Lgl~G~~~ 111 (453)
..+|++.|++++|+++|++ +++||.|+++|.++... .++.+..|+..||+ +
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl----~ 86 (332)
T cd00825 11 VSILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI----H 86 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC----C
Confidence 7899999999999999999 99999999999877654 67888999999997 4
Q ss_pred eeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------------------------------ce
Q 012909 112 IEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------------------------------AV 155 (453)
Q Consensus 112 ~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------------------------Av 155 (453)
.+++++.++|++++.||+.|..+|++|.. +++||+++|.. |+
T Consensus 87 g~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaa 164 (332)
T cd00825 87 GPAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAG 164 (332)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEE
Confidence 56788899999999999999999999966 99999999863 56
Q ss_pred eeeecCCCCce-ec----cCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q 012909 156 AMLIGPDAPIA-FE----SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230 (453)
Q Consensus 156 A~Ll~~~~~l~-~~----~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d 230 (453)
|+||++.+... -. ..+.+..+. ..+. ....+. . ....+..+.+..+++ ++++++|
T Consensus 165 A~vL~~~~~a~~~~~~~~~~i~~~~~~-----~~~~-~~~~~~----~----~~~~~~~~i~~al~~------agl~~~d 224 (332)
T cd00825 165 ALVVEELEHALARGAHIYAEIVGTAAT-----IDGA-GMGAFA----P----SAEGLARAAKEALAV------AGLTVWD 224 (332)
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEc-----cCCC-CCCCCC----c----CHHHHHHHHHHHHHH------cCCCHhH
Confidence 66776543210 00 001111110 1111 000000 0 123333444444443 4689999
Q ss_pred ccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccc
Q 012909 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 310 (453)
Q Consensus 231 ~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 310 (453)
||++++|+++.++.++...++.... +..+-.+...+
T Consensus 225 id~~~~h~~~~~~~~~~e~~~~~~~--------------------------------------------~~~~~~~~~~~ 260 (332)
T cd00825 225 IDYLVAHGTGTPIGDVKELKLLRSE--------------------------------------------FGDKSPAVSAT 260 (332)
T ss_pred CCEEEccCCCCCCCCHHHHHHHHHH--------------------------------------------hCCCCceeECC
Confidence 9999999999987766433332110 00000122234
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCC-------------------------CCCEEEEEEecchhhheeeEE
Q 012909 311 PKQVGNMYTASLYAAFASLLHEKHSSL-------------------------EGKRVIMFSYGSGLTATMFSL 358 (453)
Q Consensus 311 ~~~~GN~~taSl~l~L~sll~~~~~~~-------------------------~Gd~ill~syGsG~~~~~~~l 358 (453)
..++||+++||.++.|..++.. .+.. +|++++++++|.|.+++++++
T Consensus 261 ~~~~G~~~aas~~~~l~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 261 KAMTGNLSSAAVVLAVDEAVLM-LEHGFIPPSIHIEELDEAGLNIVTETTPRELRTALLNGFGLGGTNATLVL 332 (332)
T ss_pred CcccccchhHhHHHHHHHHHHH-HhcCccCCCCCCCCCCcccCcccCCCCCCCCCEEEEeeecCCCeeEEEeC
Confidence 4799999999999999998875 2333 689999999999999887653
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=171.46 Aligned_cols=143 Identities=22% Similarity=0.299 Sum_probs=115.5
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh----CCCc-----Cee-----eEcccceEEeccCC------------------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD----GVSK-----GKY-----TVGLGQDCMAFCSE------------------ 53 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~----g~~~-----~k~-----~~Gig~r~~av~~~------------------ 53 (453)
+....|.+||..+|+++++|+++.++. +.+. .++ +.||..|++.++.+
T Consensus 12 ~g~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~ 91 (226)
T PF00195_consen 12 PGPAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAE 91 (226)
T ss_dssp SSSEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHH
T ss_pred CCCeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHH
Confidence 457899999999999999999987752 3222 233 47999999876421
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHH
Q 012909 54 -----VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAA 127 (453)
Q Consensus 54 -----~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~A 127 (453)
.+.+..|+.+|++++|+++|++++||++||+.|+|+.. .|++..+|.+.||| ++++..+.+ ..||+||..|
T Consensus 92 R~~~~~~~a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~-~PglD~~l~~~LgL--~~~v~R~~i~~~GC~gg~~~ 168 (226)
T PF00195_consen 92 RNALYAEEAPPLAEEAARKALAEAGLDPSDITHLVTVSCTGIA-APGLDARLINRLGL--RPDVQRTPIFGMGCAGGAAG 168 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSE-CS-HHHHHHHHHT----TTSEEEEEES-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcC-CCchhHHHHhcCCC--CCCcEEEEEeccchhhHHHH
Confidence 13468999999999999999999999999999999975 89999999999999 889988888 4899999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 128 LFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 128 L~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|..|.++++++ |+.+||||++|.+
T Consensus 169 L~~A~~~~~~~--p~a~VLvv~vElc 192 (226)
T PF00195_consen 169 LRRAKDIARAN--PGARVLVVCVELC 192 (226)
T ss_dssp HHHHHHHHHHS--TT-EEEEEEEEEG
T ss_pred HHHHHHHHhCC--ccceEEEEEEEee
Confidence 99999999999 7899999999998
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-17 Score=131.46 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=68.8
Q ss_pred hcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhh
Q 012909 222 EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYD 301 (453)
Q Consensus 222 ~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~ 301 (453)
+++|++++|||++++||++.++.+.. .+.+|++.++.+ .+
T Consensus 2 ~~~g~~~~did~~i~hq~~~~~~~~~------------------------~~~lgi~~~~~~---------~~------- 41 (90)
T PF08541_consen 2 ERAGLSPDDIDHFIPHQASKKILDSI------------------------AKRLGIPPERFP---------DN------- 41 (90)
T ss_dssp HHTT--GGGESEEEE-SSSHHHHHHH------------------------HHHHTS-GGGBE----------T-------
T ss_pred ccccCCHHHCCEEEeCCCCHHHHHHH------------------------HHHcCCcHHHHH---------HH-------
Confidence 35679999999999999999998772 233477766321 12
Q ss_pred hhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 302 LKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 302 ~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
.+++||++++|+|++|++++++ +++++||+|+++++|+|+++++++++|
T Consensus 42 ---------~~~~Gn~~sa~~~~~L~~~~~~-g~~~~Gd~vl~~~~G~G~~~~~~~~~~ 90 (90)
T PF08541_consen 42 ---------LAEYGNTGSASIPINLADALEE-GRIKPGDRVLLVGFGAGFSWGAAVLRW 90 (90)
T ss_dssp ---------HHHH-B-GGGHHHHHHHHHHHT-TSSCTTEEEEEEEEETTTEEEEEEEE-
T ss_pred ---------HhccCcchhhhHHHHHHHHHHc-CCCCCCCEEEEEEEEhhheeEEEEEEC
Confidence 2799999999999999999998 789999999999999999999999986
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=145.71 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=128.7
Q ss_pred CCCCceeEEeEEEEEcCCc--eechhHHhhhhCC----CcC------ee--eEcccceEEeccCC------C-------C
Q 012909 3 SWHPKNVGILALDIYFPPT--CVLQEALEVHDGV----SKG------KY--TVGLGQDCMAFCSE------V-------E 55 (453)
Q Consensus 3 ~~~~~~vgI~~i~~y~P~~--~v~~~~l~~~~g~----~~~------k~--~~Gig~r~~av~~~------~-------e 55 (453)
+.|+..|.+...+.|-|+. +++.+.+.+.... +++ |+ +.|+|.+.. +|+. + +
T Consensus 3 ~~R~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy-~P~~~~~~p~~~s~~~a~~ 81 (290)
T PF08392_consen 3 MRRPRPVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETY-LPPALHEIPPDPSLAAARE 81 (290)
T ss_pred cCCCCCEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCcccc-CCcccccCCCcccHHHHHH
Confidence 4678899999999999964 6788887776432 222 22 579998875 2221 1 2
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHH
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNW 134 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~ 134 (453)
.+..+...|++++|+++|++|+|||.||+.+++ ....||++++|++++|+ ..++..+++. +||++|+.+++.|.++
T Consensus 82 Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~-f~ptPSLsamIvnr~~m--r~di~~~nLsGMGCsAgliai~lA~~l 158 (290)
T PF08392_consen 82 EAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSL-FNPTPSLSAMIVNRYGM--RSDIKSYNLSGMGCSAGLIAIDLAKDL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcC-CCcCCcHHHHHHHHhCC--CcCeeeecccCCcchhhHHHHHHHHHH
Confidence 356688899999999999999999999987655 46789999999999999 8899999995 8999999999999999
Q ss_pred HHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCC
Q 012909 135 VESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAP 164 (453)
Q Consensus 135 v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~ 164 (453)
++.+ |+.+||||++|.. ++|+|++..+.
T Consensus 159 L~~~--p~~~ALVVstE~~s~~~Y~G~~rsmlv~NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 159 LQAH--PNSYALVVSTENISANWYRGNDRSMLVSNCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred HHhC--CCcEEEEEEEeecccccccCCcHHHhhccccccCCceeEEeecCcc
Confidence 9999 7799999999997 88999987753
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=140.08 Aligned_cols=287 Identities=14% Similarity=0.027 Sum_probs=175.8
Q ss_pred eeEEeEEEEEcCCce------------echhHHhhhhCCC-cCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHc
Q 012909 8 NVGILALDIYFPPTC------------VLQEALEVHDGVS-KGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKY 72 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~------------v~~~~l~~~~g~~-~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~a 72 (453)
+|.|.+++...|--. +++.+...+.+.. .+++. +|+..++ + ...+....|+..|++++|+++
T Consensus 4 ~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~r~~~La~~Al~~aL~~a 80 (348)
T PRK06147 4 ALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPP--W-RGPERLAEMAAPAIAEALEGL 80 (348)
T ss_pred ceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCcc--c-CchHHHHHHHHHHHHHHHHhc
Confidence 588999998888544 2333333334443 45663 3454443 3 345678899999999999999
Q ss_pred C-CCcCCcCEEEEEcc-----cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEE
Q 012909 73 K-IDPTQIGRLEVGSE-----TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGL 146 (453)
Q Consensus 73 g-i~~~~Id~li~~t~-----s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aL 146 (453)
+ +++++||++++.++ .+.+..+..+..+++.||+ ....+.+++..+|.+++.||..|..+|++|.+ +.+|
T Consensus 81 ~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~--~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~~~l 156 (348)
T PRK06147 81 PALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGL--RLEPGSAVIARGRVSGAVALAQARRLIAAGGC--PRVL 156 (348)
T ss_pred ccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCC--CCCCCcccccccchHHHHHHHHHHHHHHcCCC--CEEE
Confidence 9 79999999998654 3445556778899999997 34467899999999999999999999999976 9999
Q ss_pred EEEeecc-----------------------------ceeeeecCCCCc-eeccCceeeecccccccc-ccCCCCCCceec
Q 012909 147 VVCTDTA-----------------------------AVAMLIGPDAPI-AFESKLRGSHMSHAYDFY-KPNLASEYPVVD 195 (453)
Q Consensus 147 Vv~~d~~-----------------------------AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~-~p~~~~~~~~vd 195 (453)
|+++|.. |+++||++.+.. .-...+.+.......|.+ ... . -| .+
T Consensus 157 vgg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~~~A~~rga~i~a~g~~~~~~~~~~~~-~--~p-~~ 232 (348)
T PRK06147 157 VAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRPAGGEAPGLPLLGLGLGREPAPVGESE-D--LP-LR 232 (348)
T ss_pred EEeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccHhhhhcCCCceEEEEEeecCCCcccCC-C--CC-CC
Confidence 9999964 666666654210 000001111111111211 110 0 01 02
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCC
Q 012909 196 GKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYS 275 (453)
Q Consensus 196 G~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l 275 (453)
| +.+..+++..++ ++++.++||||++.|-...+...+.....+.. .|....+
T Consensus 233 g--------~gl~~ai~~AL~------~agl~~~dId~v~ah~~gt~~~d~~e~~A~~~------------~f~~~~~-- 284 (348)
T PRK06147 233 G--------DGLTQAIRAALA------EAGCGLEDMDYRIADLNGEQYRFKEAALAEMR------------LFRVRKE-- 284 (348)
T ss_pred h--------HHHHHHHHHHHH------HcCCCHHHCCEEEcCCCCCccchHHHHHHHHH------------HhhhccC--
Confidence 2 223334443333 34688999999999988766543322111000 0000000
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh-cCcCCCCCEEEEEEecchhhhe
Q 012909 276 TLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVIMFSYGSGLTAT 354 (453)
Q Consensus 276 ~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~-~~~~~~Gd~ill~syGsG~~~~ 354 (453)
.. |-......+||+++|+-.+.|+..+.. .....+|.+++++|-.-.-.-+
T Consensus 285 ~~----------------------------~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~~~L~~s~~d~g~r~ 336 (348)
T PRK06147 285 FF----------------------------DLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGPNVLCHLSDDDGARA 336 (348)
T ss_pred CC----------------------------ceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCCcEEEEecCCCCceE
Confidence 00 011122679999999988888764432 1234689999999887554556
Q ss_pred eeEEEEe
Q 012909 355 MFSLQLQ 361 (453)
Q Consensus 355 ~~~l~~~ 361 (453)
+++++-+
T Consensus 337 a~~l~~~ 343 (348)
T PRK06147 337 ALVLEYR 343 (348)
T ss_pred EEEEecc
Confidence 6666543
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=120.82 Aligned_cols=90 Identities=11% Similarity=0.002 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
++....+|+.+|+++||+++|++++|||.+++++. +. .+..++++++.||+ +.+++.+||++++.||.+|.
T Consensus 46 ~EkAe~eLa~eAa~~ALekAGL~~~DID~IIvGdl-~~--Q~~~As~vA~~LGI------P~fdV~~ACSTf~~AL~lAa 116 (327)
T TIGR02845 46 WEKAERKLMEDAVNLALKKANLKKDDVDFFLAGDL-LN--QIITANFVARDLGI------PFLGLYGACSTSMETLALGA 116 (327)
T ss_pred cchhHHHHHHHHHHHHHHHcCCCHHHCCEEEEeCC-CC--cccHHHHHHHHhCC------CEEEEeccCHHHHHHHHHHH
Confidence 35677899999999999999999999999999973 32 34578899999996 35999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|++|.+ ++||||++|..
T Consensus 117 ~lI~SG~a--d~VLVV~Ssh~ 135 (327)
T TIGR02845 117 MLVDGGFA--DRVLAATSSHY 135 (327)
T ss_pred HHHhCCCC--CEEEEEEeccc
Confidence 99999977 99999997654
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=125.33 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+++...+|+.+|++++|+++|++++|||.+++++... .+..++++++.||+ +++++.++|+++..||.+|.
T Consensus 52 wEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~---Q~~sAs~vA~~LGI------Pa~dV~gACST~~~AL~lAa 122 (337)
T PRK08304 52 WEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLN---QIISANFAARELGI------PFLGLYGACSTMMESLALGS 122 (337)
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCC---CcchHHHHHHHhCC------cEEEEeccCHHHHHHHHHHH
Confidence 3567789999999999999999999999999997532 34678899999885 58999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc---------------------------ceeeeecCCC
Q 012909 133 NWVESASWDGRYGLVVCTDTA---------------------------AVAMLIGPDA 163 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~---------------------------AvA~Ll~~~~ 163 (453)
.+|++|.+ ++||||+++.. |+|+||++..
T Consensus 123 ~lI~SG~a--d~VLVV~Ssh~s~aerqfr~P~eyg~qrp~taqwtvtGAGA~i~~~~~ 178 (337)
T PRK08304 123 MLIDGGFA--DRVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAVLLSREG 178 (337)
T ss_pred HHHhcCCC--CEEEEEEcchhhhhhhhccCchhccccCCCcceEEeeccEEEEEecCC
Confidence 99999977 99999999975 9999998874
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-12 Score=128.48 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+++..+|+.+|++++|+++|++++|||.|++++.++....+..+..++..||+ ..+++++++.++|++++.||..|..
T Consensus 19 ~~~~~~La~~A~~~AL~dAgl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl--~~~~~~~~v~~~c~s~~~al~~A~~ 96 (386)
T cd00751 19 DVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGL--PESVPATTVNRVCGSGLQAVALAAQ 96 (386)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCchhhhccccHHHHHHHHHHHH
Confidence 58899999999999999999999999999999877655567778889999998 3458899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++|.. ++|||+++|.+
T Consensus 97 ~I~sG~~--~~vLv~g~e~~ 114 (386)
T cd00751 97 SIAAGEA--DVVVAGGVESM 114 (386)
T ss_pred HHHCCCC--CeEEEeeeecc
Confidence 9999977 99999999976
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=125.28 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+++..+|+.+|++++|+++|++++|||.|++++.++....+..+..++..+|+ ..+++++++.++|++++.||..|.+
T Consensus 18 ~~t~~~La~~A~~~Al~dAgl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl--~~~~~~~~v~~~Casg~~al~~A~~ 95 (386)
T TIGR01930 18 DVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQNIARQAALLAGL--PESVPAYTVNRQCASGLQAVILAAQ 95 (386)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCceeeeecchhhHHHHHHHHHHH
Confidence 58899999999999999999999999999999877655456778889999998 3468899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++|.. ++|||+++|.+
T Consensus 96 ~I~sG~~--~~vLv~g~e~~ 113 (386)
T TIGR01930 96 LIRAGEA--DVVVAGGVESM 113 (386)
T ss_pred HHHCCCC--CEEEEEEehhh
Confidence 9999977 99999999976
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=123.65 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=92.4
Q ss_pred eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCC
Q 012909 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 119 (453)
Q Consensus 40 ~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~ 119 (453)
.+|+|+..+.. ..+++..+|+++|++++|+++|+++++||.|++++.++.......+..++..+|+ ++.+.+++.+
T Consensus 5 IvG~g~t~~~~-~~~~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl---~~~~~~~v~~ 80 (385)
T PRK12578 5 VIGVGNSKFGR-RDDVSVQELAWESIKEALNDAGVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGL---TGKVPLRVEA 80 (385)
T ss_pred EEeecccceee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccCChHHHHHHHhCC---CCCCeeEEec
Confidence 46888877643 4578899999999999999999999999999999877543233457889999998 4566799999
Q ss_pred cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 120 ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 120 aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++++.||..|...|++|.. ++||||++|.+
T Consensus 81 ~casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 112 (385)
T PRK12578 81 MCATGLAASLTAYTAVASGLV--DMAIAVGVDKM 112 (385)
T ss_pred cCHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999999999976 99999999986
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-11 Score=122.81 Aligned_cols=110 Identities=12% Similarity=0.127 Sum_probs=92.4
Q ss_pred eEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.+...+.-. ..++++.+|+.+|++++|+++|++|++||.|++|+.++....+..+..++..+|+ +..+++++
T Consensus 6 Ivg~~rTpfgk~~g~~~~~~~~~La~~A~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~ 83 (393)
T PRK05656 6 IVAATRTAIGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGL--PHSVPAMT 83 (393)
T ss_pred EEEcccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCC--CCCcceEE
Confidence 345665554321 1357889999999999999999999999999999987643345677889999998 34589999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|++|..|+..|..+|++|.. +.+||+++|.+
T Consensus 84 V~~~Casg~~ai~~A~~~I~sG~~--d~vLv~G~E~m 118 (393)
T PRK05656 84 LNKVCGSGLKALHLAAQAIRCGDA--EVIIAGGQENM 118 (393)
T ss_pred ecccchhHHHHHHHHHHHHHcCCC--CEEEEEEEhhh
Confidence 999999999999999999999976 99999999987
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-11 Score=122.52 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=90.3
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCC--ccHHHHHHHHhcccCCCCeeEEe
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS--KSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~--~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
+.+|+|+..+....++++..+|+++|++++|+++|++++|||.|++++ ++...+ ...+..|++.||+ ...++++
T Consensus 6 ~IvG~g~t~~~~~~~~~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl---~~~~~~~ 81 (386)
T PRK08313 6 AVLGTGQTKYVAKRQDVSMAGLVREAIDRALADAGLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA---TGKPLIR 81 (386)
T ss_pred EEEEeecCCcCccCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-cccccccccCchHHHHHhcCC---CCCceEE
Confidence 356888877622245778999999999999999999999999999987 443211 1234689999998 5678899
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|.+|..+++.|...|++|.+ ++||||++|.+
T Consensus 82 v~~~casg~~al~~A~~~I~sG~~--~~vLVvg~e~~ 116 (386)
T PRK08313 82 VHTAGSVGGSTAVVAASLVQSGVY--RRVLAVAWEKQ 116 (386)
T ss_pred EeccCHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEc
Confidence 999999999999999999999977 99999999975
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-10 Score=108.33 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
++...+|+.+|++.||+++|++++|||.+++|+.+.. . ..++++++.||+ + .+++.+||+++..||.+|..
T Consensus 51 EkAE~~L~~EA~~~AL~kAGI~~~DID~i~vGdL~nQ-~--ipssfvar~LGI---P---~~gV~gACSTg~eAL~lAa~ 121 (334)
T PRK12404 51 EKAERKLLEEACSRAIEKAKLRKEDIQFFLAGDLMNQ-I--TPTSFAARTLGI---P---YLGLFGACSTSMEGLALAAL 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCC-c--CcHHHHHHHhCC---C---ccceeecCHHHHHHHHHHHH
Confidence 4566789999999999999999999999999987732 2 344599999986 3 48999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc---------------------------ceeeeecCCCCceeccCceeeeccccccccccC
Q 012909 134 WVESASWDGRYGLVVCTDTA---------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPN 186 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~---------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~ 186 (453)
+|++|.. ++|||+++-=. |.|+||++... .+.+.+.-...+-|+=.-+
T Consensus 122 ~VaSG~A--d~VLavtsSH~~~aErqfR~P~eyG~Qrp~taqwTvTgaga~~l~~~~~---~~~i~~~T~Gkv~D~g~~d 196 (334)
T PRK12404 122 IVNSGGA--KYVLTGASSHNAAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAILSKTGD---GPRVTSATIGRVVDMGLTD 196 (334)
T ss_pred HHHcCCC--CEEEEEeCcccchhhhhccCcccccCcCCCcccEEEEceEEEEEecCCC---CceEEEEEEEEEEecCCCC
Confidence 9999987 99999987432 99999987642 1112222223334432211
Q ss_pred CCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhh
Q 012909 187 LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 252 (453)
Q Consensus 187 ~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~ 252 (453)
+. .|-.-. --.|.+.....|. +-+.+++|.|.++.-- -.++.++.+..|+
T Consensus 197 ~~----nMGaaM----APAA~dti~~h~~-------d~~~~~~~yDlI~TGD-Lg~vG~~i~~~ll 246 (334)
T PRK12404 197 PF----NMGGAM----APAAVDTIEAHLR-------DRQIDASYYDLIVTGD-LGHVGREIAKDLL 246 (334)
T ss_pred cc----cchhhh----hHHHHHHHHHHHH-------HhCCChhhccEEEEcc-hHHHHHHHHHHHH
Confidence 00 111111 1223333333332 3358899999999642 2344444444443
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-11 Score=122.12 Aligned_cols=97 Identities=6% Similarity=0.034 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.++++.+|+.+|++++|+++|++|++||.||+|+.++.......+..++..+|+ +.+++++++.++|++|..||..|.
T Consensus 22 ~~~~~~eLa~~A~~~aL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~ 99 (393)
T PRK08235 22 KDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGI--PWEVQTETVNKVCASGLRAVTLAD 99 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 367899999999999999999999999999999886522233455677889998 557999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|++|.. +.|||+++|.+
T Consensus 100 ~~I~sG~~--d~vLvvG~E~m 118 (393)
T PRK08235 100 QIIRAGDA--SVIVAGGMESM 118 (393)
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999976 99999999987
|
|
| >PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-11 Score=107.37 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCcccccc
Q 012909 205 MALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 284 (453)
Q Consensus 205 ~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~ 284 (453)
+.+...+..++++. +++..|..+|++|.++.|+++.. ++.|+++++
T Consensus 40 ~~i~~~~~~~L~~~------g~~~~~~~~wavHPGG~~ILd~v------------------------~~~L~L~~~---- 85 (151)
T PF02797_consen 40 DNIPPFVEDLLARH------GLSDWDILFWAVHPGGRKILDAV------------------------EEALGLSPE---- 85 (151)
T ss_dssp HHHHHHHHHHHHGG------TCCSGGGSEEEEE-SSHHHHHHH------------------------HHHHTS-GG----
T ss_pred HHHHHHHHHHHhhh------cccccccceeeecCChHHHHHHH------------------------HHHcCCCHH----
Confidence 34555555555443 45544667899999999998773 344566665
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh---cCcCCC---CCEEEEEEecchhhheeeEE
Q 012909 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE---KHSSLE---GKRVIMFSYGSGLTATMFSL 358 (453)
Q Consensus 285 ~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~---~~~~~~---Gd~ill~syGsG~~~~~~~l 358 (453)
++++|+.+.+++|||+|+++++.|..+++. .+.... ++++++++||+|++.+++++
T Consensus 86 ------------------~l~~Sr~vLr~yGNmSSaTVlfVL~~~~~~~~~~g~~~~~~g~~~gv~~afGPG~t~E~~lL 147 (151)
T PF02797_consen 86 ------------------QLRASREVLREYGNMSSATVLFVLERMRRKSAEEGAPPPGEGGEWGVMLAFGPGLTIEGMLL 147 (151)
T ss_dssp ------------------GGHHHHHHHHHH-B-GGGHHHHHHHHHHHHHHHTTTSBTTTTBSEEEEEEEETTTEEEEEEE
T ss_pred ------------------HHHHHHHHHHhcCCCCCcchHHHHHHHHhhhhhhcccCCCCCCCeEEEEEECCcceEeeEEE
Confidence 456777888999999999999999999982 122222 48999999999999999999
Q ss_pred EEe
Q 012909 359 QLQ 361 (453)
Q Consensus 359 ~~~ 361 (453)
+-.
T Consensus 148 r~~ 150 (151)
T PF02797_consen 148 RSV 150 (151)
T ss_dssp EE-
T ss_pred eeC
Confidence 854
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A .... |
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-11 Score=121.56 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+++..+|+.+|++++|+++|++|++||.|++|+.++....+..+..++..+|+ +.++++++|.++|++|+.|+..|..
T Consensus 23 ~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl--~~~~p~~~V~~~CaSg~~Al~~A~~ 100 (404)
T PRK06205 23 DVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGL--PVTVPGMQLDRRCGSGLQAVITAAM 100 (404)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCC--CCCCceeehhhhhhHHHHHHHHHHH
Confidence 57899999999999999999999999999999988776677788889999998 4478999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++|.. +.|||+++|.+
T Consensus 101 ~I~sG~~--d~vLv~G~E~m 118 (404)
T PRK06205 101 QVQTGAA--DVVIAGGAESM 118 (404)
T ss_pred HHHcCCC--CEEEEeeehhh
Confidence 9999977 99999999987
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=110.55 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCE----EEEEcccCCC--------------------------CCccHHHHHHHHhc
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID--------------------------KSKSIKTFLMQIFE 105 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~Id~----li~~t~s~~~--------------------------~~~~~a~~l~~~Lg 105 (453)
....|++.|++++|+++|+++++||. +++++..+.. ..+..+.+|+..||
T Consensus 70 ~~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg 149 (406)
T cd00834 70 RFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLG 149 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhC
Confidence 34689999999999999999877664 6666654321 12456788999999
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+. .+.+.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 150 l~----g~~~~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~ 190 (406)
T cd00834 150 LR----GPNYTVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEA 190 (406)
T ss_pred CC----CcccccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCccc
Confidence 82 35678889999999999999999999977 9999998874
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=120.26 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCcc-HHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKS-IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~-~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.++.+.+|+.+|++++|+++|++|++||.|++|+.++....++ .+..+...+|+ +.++++++|+++|+||..||..|
T Consensus 23 ~~~~~~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~V~~aCaSg~~Al~~A 100 (392)
T PRK07108 23 NMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGL--PVTVPGMTVNRFCSSGLQTIALA 100 (392)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 4667899999999999999999999999999999887655444 78888888898 55699999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+||+++|.+
T Consensus 101 ~~~I~sG~~--d~vlagGvE~m 120 (392)
T PRK07108 101 AQRVIAGEG--DVFVAGGVESI 120 (392)
T ss_pred HHHHHCCCC--CEEEEEEEecc
Confidence 999999976 99999999988
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=119.77 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCC-ccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~-~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.+++..+|+.+|++++|+++|++|++||.|++|+.++.... +..+..+...+|+ +.++++++|.++|++|+.|+..|
T Consensus 23 ~~~~~~eL~~~A~~~AL~~agi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 100 (394)
T PRK09051 23 KDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGV--PQETPAFNVNRLCGSGLQAIVSA 100 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCC--CCCCceEEecccchHHHHHHHHH
Confidence 46789999999999999999999999999999998875433 3455666677787 45689999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..+|++|.+ +.|||+++|.+
T Consensus 101 ~~~I~sG~~--d~vLvvG~E~m 120 (394)
T PRK09051 101 AQAILLGDA--DVAIGGGAESM 120 (394)
T ss_pred HHHHHcCCC--CEEEEEeehhc
Confidence 999999977 99999999987
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=118.73 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEcccCCCCCccHHHHH-HHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~t~s~~~~~~~~a~~l-~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+++..+|+.+|++++|+++ |++|++||.||+|+.++....+.....+ ...+|+ +..+++++|+++|++|..|+..|
T Consensus 28 ~~s~~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~aCaSg~~Al~~A 105 (399)
T PRK09052 28 NTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGL--PNSVGGVTVNRFCASGLQAVAMA 105 (399)
T ss_pred CCCHHHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCC--CCCCceeeecchhhHHHHHHHHH
Confidence 5789999999999999997 9999999999999887765444555554 455587 34589999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..+|++|.. +.|||+++|.+
T Consensus 106 ~~~I~sG~~--d~vLv~G~E~m 125 (399)
T PRK09052 106 ADRIRVGEA--DVMIAAGVESM 125 (399)
T ss_pred HHHHHCCCC--CEEEEEEEecc
Confidence 999999977 99999999976
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=118.49 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=90.6
Q ss_pred eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeC
Q 012909 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDST 118 (453)
Q Consensus 40 ~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~ 118 (453)
..|.+...+. ..+++..+|+++|++++|+++|+++++||.|++++..+... .+..+..+++.||+ .+++++++.
T Consensus 8 Ivg~~~t~~~--r~~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~---~~~~~~~v~ 82 (399)
T PRK06059 8 ILGAGMHPWG--KWGRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW---NGAPVSSSY 82 (399)
T ss_pred EEEecccccC--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC---CCCceeccc
Confidence 4567766554 34678899999999999999999999999999887655432 34567899999998 567889999
Q ss_pred CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 119 ~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++|++++.||..|..+|++|.. ++|||+++|.+
T Consensus 83 ~~Casg~~al~~A~~~I~sG~~--~~vLvvg~e~~ 115 (399)
T PRK06059 83 AACASGSQALQSARAQILAGLC--DVALVVGADTT 115 (399)
T ss_pred chhHHHHHHHHHHHHHHHCCCC--CEEEEEEEccc
Confidence 9999999999999999999976 99999999986
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=117.52 Aligned_cols=110 Identities=9% Similarity=0.102 Sum_probs=89.0
Q ss_pred eEcccceEEeccC---CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFCS---EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~~---~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.+...+.... .++++.+|+.+|++++|+++|++|+|||.|++++.++....+..+..++..+|+ ..++++++
T Consensus 6 IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl--~~~~~~~~ 83 (393)
T PRK05790 6 IVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGL--PVEVPALT 83 (393)
T ss_pred EEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCC--CCCCceee
Confidence 4566666554211 258899999999999999999999999999999876533333445556667787 34678999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|+++..||..|..+|++|.. +.|||+++|.+
T Consensus 84 v~~~Casg~~al~~A~~~I~sG~~--d~vLv~G~e~~ 118 (393)
T PRK05790 84 INKVCGSGLKAVALAAQAIRAGDA--DIVVAGGQESM 118 (393)
T ss_pred ecccchHHHHHHHHHHHHHHcCCC--CEEEEEeeecc
Confidence 999999999999999999999977 99999999975
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=117.05 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=92.2
Q ss_pred cccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcC
Q 012909 42 GLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNAC 121 (453)
Q Consensus 42 Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC 121 (453)
|+|+..+.. ..+.+..+|+++|++++|+++|+++++||.|++++..+....+..+..++..+|+ +.++.+++.++|
T Consensus 2 G~g~t~~~~-~~~~~~~eL~~~A~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl---~~~~~~~v~~~c 77 (375)
T cd00829 2 GVGMTPFGR-RSDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGL---LGKPATRVEAAG 77 (375)
T ss_pred eeeecCccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecccccccccchHHHHHHHcCC---CCcceeeEeCcc
Confidence 566666542 2367899999999999999999999999999999876654456788999999998 478899999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 122 YGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 122 ~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.++..++..|..+|++|.. +.|||+++|.+
T Consensus 78 ~sg~~al~~Aa~~I~sG~~--~~vlv~g~e~~ 107 (375)
T cd00829 78 ASGSAAVRAAAAAIASGLA--DVVLVVGAEKM 107 (375)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEEEEEeec
Confidence 9999999999999999966 99999999987
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=116.59 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=92.3
Q ss_pred eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccC-CCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 38 KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV-IDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 38 k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~-~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
-+.+|+|+..+.. ..+++..+|+.+|++++|+++|++++|||.+++++... ....+..+..+++.||+ .+.++++
T Consensus 11 vaIvG~g~t~~~~-~~~~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~~~a~~l~~~lG~---~~~~~~~ 86 (392)
T PRK06065 11 VAVIGAGLTLFRR-RLLETPQELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVHMKGEYLSHGSGG---IRKPVSR 86 (392)
T ss_pred eEEEEecccCCcC-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccccHHHHHHHHcCC---CCCCeEE
Confidence 3467899887653 35788999999999999999999999999999986311 12245577889999997 4578899
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|++|..||..|...|++|.. ++||||++|++
T Consensus 87 V~~~gasG~~al~~A~~~I~sG~a--d~vLVvg~e~~ 121 (392)
T PRK06065 87 VYVGGATGVMTAIAGWYHVASGLC--QKVLAVAEEKM 121 (392)
T ss_pred EecCchhHHHHHHHHHHHHhCCCC--CEEEEEEeecc
Confidence 999999999999999999999987 99999999985
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=117.11 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=91.2
Q ss_pred eEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.+...+... ..+.++.+|+.+|++++|+++|+++++||.|++++.++....+..+..++..+|+ +.++++++
T Consensus 7 Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~ 84 (426)
T PRK08170 7 IVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILGCAMPSPDEANIARVVALRLGC--GEKVPAWT 84 (426)
T ss_pred EEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCc--CCCceeee
Confidence 345565554321 1146889999999999999999999999999999876543345677889999998 45789999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|++++.|+..|..+|++|.. +.|||+++|.+
T Consensus 85 v~~~CaSg~~al~~A~~~I~sG~~--d~vLv~G~E~m 119 (426)
T PRK08170 85 VQRNCASGMQALDSAAANIALGRA--DLVLAGGVEAM 119 (426)
T ss_pred ccchhhHHHHHHHHHHHHHHCCCC--CEEEEEEEecc
Confidence 999999999999999999999976 99999999976
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=116.55 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.+.++.+|+..|++++|+++|++|++||.||+|+.++... ....+......+|+ +.++++++|+++|+||+.||.+|
T Consensus 24 ~~~~~~dLa~~A~~~al~~agi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl--~~~~pa~~Vn~aCaSg~~Ai~~A 101 (402)
T PRK08242 24 HEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGL--PETVPGVQINRFCASGLEAVNLA 101 (402)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccccccHHHHHHHHcCC--CCCCCeEEEcchhhhHHHHHHHH
Confidence 4567899999999999999999999999999999887543 23455666677787 56799999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.++|++|.. +.+||+++|.+
T Consensus 102 ~~~I~sG~~--d~vLv~G~E~m 121 (402)
T PRK08242 102 AAKVRSGWD--DLVIAGGVESM 121 (402)
T ss_pred HHHHHcCCC--CEEEEEEEEcc
Confidence 999999976 99999999987
|
|
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=111.21 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCCC-------------------CccHHHHHHHHhcccCCCCeeE
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVIDK-------------------SKSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~~-------------------~~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
..|++.|++++|+++|+++++|| .|++++.++.+. .+..+..++..||+ . -+.
T Consensus 88 ~~l~~~aa~~Al~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl---~-g~~ 163 (424)
T smart00825 88 QRLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDL---R-GPS 163 (424)
T ss_pred HHHHHHHHHHHHHHcCCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCC---C-CCc
Confidence 45999999999999999999999 788887654322 34567789999998 2 257
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 164 ~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~ 199 (424)
T smart00825 164 VTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNL 199 (424)
T ss_pred cccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeee
Confidence 88899999999999999999999977 8999999985
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=114.78 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=84.9
Q ss_pred eEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC-CCCeeEE
Q 012909 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGV 115 (453)
Q Consensus 40 ~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G-~~~~~~~ 115 (453)
.+|.+...+.-. ..+.++.+|+.+|++++|+++|++|++||.|++|+..+.... .....+..+++ | +.+++++
T Consensus 11 Ivg~~rTpf~k~~g~~~~~~~~eL~~~a~~~aL~~Agi~~~dID~vi~G~~~~~~~~--~~~~~~~~l~a-g~~~~~p~~ 87 (397)
T PRK06954 11 IASAARTPMAAFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAGQG--QAPARQAALGA-GLPLSVGCT 87 (397)
T ss_pred EEecccCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCCCccc--hHHHHHHHHcC-CCCCCccEe
Confidence 345555544310 135678999999999999999999999999999987654432 22333334443 2 4469999
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|.++|++|..|+..|..+|++|.+ +.+||+++|.+
T Consensus 88 ~V~~aCaSG~~Av~~A~~~I~sG~~--d~vLv~G~E~m 123 (397)
T PRK06954 88 TVNKMCGSGMRAAMFAHDMLVAGSV--DVIVAGGMESM 123 (397)
T ss_pred eccccchHHHHHHHHHHHHHHCCCC--CEEEEEeeecc
Confidence 9999999999999999999999976 99999999987
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=114.62 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHH-HHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKT-FLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~-~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.+.+.+|+.+|++++|++++++|++||.|++++.++....+..+. .+++.+|+ .++++++|.++|++|+.|+..|.
T Consensus 20 ~~~~~el~~~a~~~Al~~agl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~---~~~p~~~V~~~Casg~~al~~A~ 96 (393)
T cd00826 20 NDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL---QEAPAIGMNNLCGSGLRALALAM 96 (393)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCC---CCCcEEEecchhHHHHHHHHHHH
Confidence 466799999999999999999999999999998887654444454 36677775 77899999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|++|.. +.+||+++|.+
T Consensus 97 ~~I~sG~~--~~vlv~g~e~~ 115 (393)
T cd00826 97 QLIAGGDA--NCILAGGFEKM 115 (393)
T ss_pred HHHHCCCC--CEEEEEeeecc
Confidence 99999976 99999999987
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=108.04 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.+.++.+|+..|++.+|++++++|++||.|++|+..+......++..+.-..|+ +..++++.|+++|++|..|+..|.
T Consensus 22 ~~~~~~~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl--~~~vp~~~V~~~CaSG~~Av~~a~ 99 (264)
T PF00108_consen 22 ADVSPEDLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGL--PESVPATTVNRACASGLQAVHLAA 99 (264)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS---TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhhhhccc--ccccceeeehhhhhHHHHHHHHhh
Confidence 467889999999999999999999999999999988765566778888888898 678999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. +.+|++++|.+
T Consensus 100 ~~I~sG~~--dvvlagGvE~m 118 (264)
T PF00108_consen 100 MAIASGEA--DVVLAGGVESM 118 (264)
T ss_dssp HHHHTTS---SEEEEEEEEET
T ss_pred hhhcCCCc--cEEEEeccccc
Confidence 99999976 99999999998
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=113.14 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=91.5
Q ss_pred eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC--CccHHHHHHHHhcccCCCCeeEEee
Q 012909 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK--SKSIKTFLMQIFEKYGNTDIEGVDS 117 (453)
Q Consensus 40 ~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~--~~~~a~~l~~~Lgl~G~~~~~~~dv 117 (453)
.+|.++..+.- ..+++..+|+.+|++++|+++|+++++||.|++++.++... .+..+..++..||+ +.++++++
T Consensus 6 IvG~~~tp~~~-~~~~~~~eLa~~a~~~Al~dagl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl---~~~~~~~v 81 (389)
T PRK06064 6 IIGVGQTKFGE-LWDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGL---APIPATRV 81 (389)
T ss_pred EEEccccccee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccccccccccHHHHHHHHcCC---CCCCeeEE
Confidence 45677665432 34678999999999999999999999999999988765432 36678889999998 46788999
Q ss_pred CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 118 ~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.++|++++.||..|..+|++|.. ++|||+++|.+
T Consensus 82 ~~aCasg~~ai~~A~~~I~sG~~--~~vLv~G~e~~ 115 (389)
T PRK06064 82 EAACASGGAALRQAYLAVASGEA--DVVLAAGVEKM 115 (389)
T ss_pred eCCcHHHHHHHHHHHHHHHCCCC--CEEEEEEEEec
Confidence 99999999999999999999977 99999999975
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=111.00 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=86.1
Q ss_pred eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee
Q 012909 38 KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS 117 (453)
Q Consensus 38 k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv 117 (453)
-+.+|+|+..+.. .++++..+|+.+|++++|+++|++++|||.+++++.. +..++ ..+++.||+ +..+.+++
T Consensus 10 vaIvG~g~t~~~~-~~~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~~~--~~~~~--~~la~~lGl---~~~~~~~~ 81 (384)
T PRK06158 10 TAIVGAATAGLGE-APGLSAMELLAQAAHRALADAGLTMADVDGLFTASPD--DALWG--LSVAEYLGI---RPRFVDGT 81 (384)
T ss_pred EEEEEeeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC--CCCcH--HHHHHHcCC---CCeeeccc
Confidence 3467999887643 4578899999999999999999999999999998743 22333 578999998 55778888
Q ss_pred CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 012909 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCT 150 (453)
Q Consensus 118 ~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~ 150 (453)
..+|+++..+|..|..+|++|.. ++|||+.+
T Consensus 82 ~~g~~s~~~al~~A~~~I~sG~~--d~vLV~~g 112 (384)
T PRK06158 82 MIGGSSFLAHLLPAALALEAGLC--DVALICYG 112 (384)
T ss_pred cCccHHHHHHHHHHHHHHHcCCC--CEEEEeec
Confidence 99999999999999999999977 99999843
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=110.52 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=86.4
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCC--CCccHHHHHHHHhcccCCCCeeEEe
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID--KSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~--~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
+.+|.+...+.. ..+++..+|+.+|++++|+++|+++++||.|++++..+.. .....+..+...+|+ ..+++++
T Consensus 5 ~Ivg~g~tpfgr-~~~~~~~eL~~eA~~~AL~dAgl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl---~~~p~~~ 80 (389)
T PRK07516 5 SIVGWAHTPFGK-LDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPAL---RFKPATR 80 (389)
T ss_pred EEEeCCcceeee-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEecCCccccccchhHHHHHhcCC---CCCceee
Confidence 346777776653 4568899999999999999999999999999998764221 111222233344565 6788999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|++|+.||..|..+|++|.+ ++|||+++|.+
T Consensus 81 v~~~CaSg~~Al~~A~~~I~sG~~--d~vLvvg~e~~ 115 (389)
T PRK07516 81 VENACATGSAAVYAALDAIEAGRA--RIVLVVGAEKM 115 (389)
T ss_pred eccccHHHHHHHHHHHHHHHCCCC--CEEEEEEehhh
Confidence 999999999999999999999977 99999999986
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=111.67 Aligned_cols=111 Identities=11% Similarity=0.130 Sum_probs=89.6
Q ss_pred eeEcccceEEec--cC--CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCcc-HHHHHHHHhcccCCCCee
Q 012909 39 YTVGLGQDCMAF--CS--EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKS-IKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 39 ~~~Gig~r~~av--~~--~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~-~a~~l~~~Lgl~G~~~~~ 113 (453)
+.+|.++..+.- .. .+.+..+|+.+|++++|+++|++++|||.|++|+.++....+. .+..+...+|+ +..++
T Consensus 49 ~IVG~grTpfgk~~~g~~~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl--~~~~p 126 (452)
T PLN02287 49 VIVAAYRTPICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGF--PETVP 126 (452)
T ss_pred EEEEeecCCCccCCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCcccccchHHHHHHHHCCC--CCCcc
Confidence 345666554431 01 3678999999999999999999999999999998765544344 34466677788 44589
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++++..+|++|..|+..|...|++|.. +.|||++.|.+
T Consensus 127 a~~V~~~CaSG~~Ai~~Aa~~I~sG~~--dvvLv~GvE~m 164 (452)
T PLN02287 127 VRTVNRQCSSGLQAVADVAAAIKAGFY--DIGIGAGVESM 164 (452)
T ss_pred eEEEeccCchHHHHHHHHHHHHHcCCC--CeEEEEeEEec
Confidence 999999999999999999999999976 99999999987
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=110.47 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=82.6
Q ss_pred eEcccceEEec--cCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCC-----ccHHHHHHHHhcccCCCCe
Q 012909 40 TVGLGQDCMAF--CSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-----KSIKTFLMQIFEKYGNTDI 112 (453)
Q Consensus 40 ~~Gig~r~~av--~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~-----~~~a~~l~~~Lgl~G~~~~ 112 (453)
.+|.+...+.. ...+++..+|+++|++++|+++|++|++||.||++++++.... ++.... ..+++ .++
T Consensus 7 Ivg~~~t~~~r~~~~~~~s~~eLa~eA~~~AL~dAgl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~--~~~~~---~g~ 81 (403)
T PRK06289 7 VLGGYQSDFARNWTKEGRDFADLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPAT--VHPAL---WGV 81 (403)
T ss_pred EEeCCcCccccccCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccccchHHHH--HhhcC---CCC
Confidence 34666554432 1257889999999999999999999999999999987664322 111111 22343 356
Q ss_pred eEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 113 EGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 113 ~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+++++.++|.+|..||..|..+|++|.+ ++|||+++|.+
T Consensus 82 ~~~~v~~~Casg~~al~~Aa~~I~sG~~--~~VLvvg~e~~ 120 (403)
T PRK06289 82 PASRHEAACASGSVATLAAMADLRAGRY--DVALVVGVELM 120 (403)
T ss_pred ceeecccccHHHHHHHHHHHHHHHcCCC--CEEEEEEEEec
Confidence 7999999999999999999999999977 99999999986
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=109.00 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=88.8
Q ss_pred eEcccceEEeccC----CCCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEcccCC-CCCccHHHHHHHHhcccCCCCee
Q 012909 40 TVGLGQDCMAFCS----EVEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVI-DKSKSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 40 ~~Gig~r~~av~~----~~ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~t~s~~-~~~~~~a~~l~~~Lgl~G~~~~~ 113 (453)
.+|.++..+.... .+.+..+|+.+|++++|+++ |++|++||.|++++..+. ...+..+..+...+|+ .+++
T Consensus 6 IvG~~~Tpfg~~~~g~~~~~~~~eL~~~A~~~AL~da~gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl---~~~p 82 (406)
T PRK07851 6 IVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY---DFLP 82 (406)
T ss_pred EEecCCCCcccCCCCccCCCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC---CCCC
Confidence 4566665543211 25778999999999999996 999999999999864432 2234567789999998 4588
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++.+.++|++|..|+..|...|++|.. +.|||+++|.+
T Consensus 83 ~~~v~~~caSG~~av~~Aa~~I~sG~~--d~vLv~G~e~~ 120 (406)
T PRK07851 83 GTTVNRYCSSSLQTTRMAFHAIKAGEG--DVFISAGVETV 120 (406)
T ss_pred eeeeeccchhHHHHHHHHHHHHHCCCC--CEEEEeeEEec
Confidence 999999999999999999999999977 99999999986
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=108.30 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+.+..+|+.+|++++|+++|+.+++||.+++|+..+... .+..+.+++..+|+ +..++++.|.++|++|..|+..|.
T Consensus 24 ~~~~~eLa~~A~~~AL~~ag~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl--~~~~p~~~V~~aCaSG~~Al~~A~ 101 (391)
T PRK07661 24 TVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGL--PYTVPAITINRYCSSGLQSIAYGA 101 (391)
T ss_pred CCCHHHHHHHHHHHHHHhcCCChhHCCEEEEEeccccccccchHHHHHHHHcCC--CCCcceeehhhhhhHHHHHHHHHH
Confidence 447899999999999999998889999999997665433 35677779999998 445999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. +.+||+++|.+
T Consensus 102 ~~I~sG~~--d~vLv~G~E~m 120 (391)
T PRK07661 102 ERIMLGHS--EAVIAGGAESM 120 (391)
T ss_pred HHHHcCCC--CEEEEEEEeec
Confidence 99999977 99999999976
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-09 Score=108.86 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=89.6
Q ss_pred eEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.+...+.-. ..+.++.+|+.+|++.+|+++|++|++||.+++|+..+....+.++..+...+|+ +..++++.
T Consensus 9 Ivg~~rTpfgk~~g~l~~~~~~eL~~~a~~~al~~agl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl--~~~~P~~t 86 (428)
T PRK08963 9 IVSGLRTPFAKQATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAYS 86 (428)
T ss_pred EEecccCCccCCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCC--CCCCccee
Confidence 345555544321 1456789999999999999999999999999999865433234456668888898 44799999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|.++|++|+.|+..|+..|++|.. +.|||+++|.+
T Consensus 87 V~~aCaSG~~Ai~~Aa~~I~sG~~--dvvLvgG~Esm 121 (428)
T PRK08963 87 VSRACATSFQAVANVAESIMAGTI--DIGIAGGADSS 121 (428)
T ss_pred ehhhhHHHHHHHHHHHHHHHCCCC--CEEEEeccccc
Confidence 999999999999999999999977 99999999987
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=106.16 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=88.2
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~ 118 (453)
+.+|.+...+.. ..+.+..+|+.+|++++|+++|++++|||.|++++.............+.+.+|+ +.++++.+.
T Consensus 10 ~IvG~g~tp~~~-~~~~~~~~L~~ea~~~AL~dagl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl---~~~~~~~v~ 85 (398)
T PRK06157 10 AILGMGCTKFGE-RWDAGAEDLMVEAFLEALADAGIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRL---PNIPVTRVE 85 (398)
T ss_pred EEEEeccccccc-cCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchhHHHHHHcCC---CCCCEEEEe
Confidence 345666665432 2356789999999999999999999999999998754322222234678889998 457888999
Q ss_pred CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 119 ~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++|++++.|++.|...|++|.. +.+||+++|.+
T Consensus 86 ~~c~sg~~ai~~A~~~I~sG~~--d~vlv~G~e~~ 118 (398)
T PRK06157 86 NFCATGSEAFRGAVYAVASGAY--DIALALGVEKL 118 (398)
T ss_pred cccHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 9999999999999999999977 99999999985
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=98.58 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCE----EEEEcccCCC-----------------C---------CccHHHHHHHHhccc
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID-----------------K---------SKSIKTFLMQIFEKY 107 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~----li~~t~s~~~-----------------~---------~~~~a~~l~~~Lgl~ 107 (453)
..|++.|++++|+++|+++++||. +++++..+.. . ....+.++...||+.
T Consensus 72 ~~l~~~aa~~Al~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~ 151 (407)
T TIGR03150 72 IQYALAAAKEAVEDSGLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAK 151 (407)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCC
Confidence 679999999999999999999886 7777643210 0 012445688888872
Q ss_pred CCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 108 GNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 108 G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
-+.+.+..+|++++.||..|..+|++|.. +.+||+++|.
T Consensus 152 ----g~~~~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~ 190 (407)
T TIGR03150 152 ----GPNHAVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEA 190 (407)
T ss_pred ----CcccccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccC
Confidence 34666778999999999999999999976 9999999986
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=105.20 Aligned_cols=110 Identities=7% Similarity=0.045 Sum_probs=87.3
Q ss_pred eEcccceEEeccCC---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFCSE---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~~~---~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.+...+..... +.++.+|+.+|++++|+++|++|++||.+++++..+.......+..+...+|+ +.+++++.
T Consensus 6 Ivg~~rTp~gr~~g~~~~~~~~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~ 83 (388)
T PRK06366 6 IVSAKRTAIGKFGRSFSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGL--PFGVTKYT 83 (388)
T ss_pred EEEcccCCcccCCCcccCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCC--CCCCccee
Confidence 34666555432111 36789999999999999999999999999998753322123446678888998 45688888
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.++|++|+.|+..|...|++|.. +.|||++.|.+
T Consensus 84 v~~~caSg~~av~~Aa~~I~sG~~--d~vla~G~e~m 118 (388)
T PRK06366 84 VNVVCASGMLAVESAAREIMLGER--DLVIAGGMENM 118 (388)
T ss_pred eechhhHHHHHHHHHHHHHhcCCC--CEEEEEeeEcc
Confidence 999999999999999999999977 89999888975
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=104.46 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCC-ccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKS-KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~-~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+.++.+|+.+|++.+|+++|++|++||.+++|........ ...+..+...+|+ +.+++++.|.++|++|..|+..|.
T Consensus 23 ~~~~~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl--~~~~p~~tV~~~CaSG~~A~~~A~ 100 (387)
T PRK07850 23 GLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGL--PYHVGATTIDCQCGSAQQANHLVA 100 (387)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccchHHHHHHHhCCC--CCCCceEEEecccccHHHHHHHHH
Confidence 4568999999999999999999999999999975432221 2345566666888 457999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. +.+||++.|.+
T Consensus 101 ~~I~sG~~--dvvla~G~E~m 119 (387)
T PRK07850 101 GLIAAGAI--DVGIACGVEAM 119 (387)
T ss_pred HHHHCCCC--CEEEEEeEecC
Confidence 99999976 99999999987
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=106.18 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=88.1
Q ss_pred eeEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEE
Q 012909 39 YTVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 39 ~~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
|.+|.+...+.-. ..+.+..+|+.+|++.+|+++|++|++||.+++|+..+......++..+.-..|+ +..++++
T Consensus 10 ~Ivg~~rTpfgk~~g~~~~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~~~~~~~~~~ar~~~l~aGl--~~~~p~~ 87 (430)
T TIGR02446 10 AIVAGLRTPFARQATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGM--NVHTDAY 87 (430)
T ss_pred EEEecccCccccCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCcCccchHHHHHHHhCCC--CCCCchh
Confidence 4456665555321 1356789999999999999999999999999999765432223344444444687 4589999
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|.++|++|+.|+..|...|++|.+ +.+||++.|.+
T Consensus 88 ~V~~~CaSG~~A~~~a~~~I~sG~~--dvvla~G~E~m 123 (430)
T TIGR02446 88 SVTRACATSFQSAVNVAESIMAGAI--DIGIAGGADSS 123 (430)
T ss_pred hhhhhhhHHHHHHHHHHHHHHCCCC--CEEEEeeeEcc
Confidence 9999999999999999999999977 99999999998
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=104.68 Aligned_cols=106 Identities=21% Similarity=0.132 Sum_probs=85.3
Q ss_pred eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCC
Q 012909 40 TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 119 (453)
Q Consensus 40 ~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~ 119 (453)
..|.+...+.......+..+|+.+|++++|+++|+++++||.+++++..+.... ...+...+|+ ..++++++..
T Consensus 5 IvG~~~t~~~~~~~~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~---~~~~~~~lGl---~~~~~~~v~~ 78 (391)
T PRK08256 5 VAGVGMTPFEKPGASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTS---GQRALYEVGM---TGIPIVNVNN 78 (391)
T ss_pred EEeccccccccCCCCCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcch---hHHHHHHcCC---CCCCCccccc
Confidence 356776665421224678999999999999999999999999999876554321 2245677887 5567789999
Q ss_pred cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 120 ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 120 aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|+++..|+..|..+|++|.. +.|||+++|.+
T Consensus 79 ~caSg~~ai~~A~~~I~sG~~--d~vLv~g~e~~ 110 (391)
T PRK08256 79 NCSTGSTALFLARQAVRSGAA--DCALALGFEQM 110 (391)
T ss_pred ccHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999999999977 99999999976
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=105.04 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=87.4
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHH-HHHHHHhcccCCCCeeEEee
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIK-TFLMQIFEKYGNTDIEGVDS 117 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a-~~l~~~Lgl~G~~~~~~~dv 117 (453)
+.+|+|...+.-.....+..+|+++|++++|+++|+++++||.+++++.+........+ ..+...||+ +.++++.+
T Consensus 19 aIvG~g~Tpfgr~~~~~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl---~~~~~~~v 95 (430)
T PRK06365 19 YMVAAGVTKFDKASPYMDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGL---VPKPSKRI 95 (430)
T ss_pred EEEEeeecCccccCCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccccccccchhhHHHHHhcCC---CCCceEEE
Confidence 45677776654323456778999999999999999999999998877644322222222 446789998 45888899
Q ss_pred CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 118 ~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.++|+++..|+..|+..|++|.+ +.|||+++|.+
T Consensus 96 ~~~~aSg~~ai~~A~~~I~sG~~--~~vLv~G~e~~ 129 (430)
T PRK06365 96 EGGGATGGLAFQAGYEEIASGRM--DCVAVYGFETM 129 (430)
T ss_pred eCCcHHHHHHHHHHHHHHHcCCC--CEEEEEEeeec
Confidence 99999999999999999999977 99999999976
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-08 Score=101.70 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEcccCCC-------------------CCccHHHHHHHHhcccCCCCee
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVID-------------------KSKSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~t~s~~~-------------------~~~~~a~~l~~~Lgl~G~~~~~ 113 (453)
...|++.|++++|+++|+++++++. +++|+.++.+ .....+..+...+|+ . .+
T Consensus 87 ~~~l~~~aa~~AL~dAgl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl---~-g~ 162 (421)
T cd00833 87 QQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDL---R-GP 162 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCC---C-CC
Confidence 4689999999999999999888774 7777764421 113466789999998 2 36
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.+.+..+|++++.||..|..+|++|.+ +.+||+++|.
T Consensus 163 ~~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~ 199 (421)
T cd00833 163 SLTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNL 199 (421)
T ss_pred ceeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeec
Confidence 788899999999999999999999977 9999999986
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=104.44 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+.++.+|+.+|++++|+++|++|++||.+++|+..+... ....+..+...+|+ +..++++.|.++|++|..|+..|.
T Consensus 23 ~~~~~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--p~~~p~~tV~~~CaSG~~Ai~~A~ 100 (401)
T PRK08131 23 SVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGL--PVTVPGQTVNRLCASGLAAVIDAA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHhcCC--CCCCceeeeechhhhHHHHHHHHH
Confidence 567899999999999999999999999999998643322 34556667788887 557999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. +.+||++.|.+
T Consensus 101 ~~I~sG~~--dvvlagG~Esm 119 (401)
T PRK08131 101 RAITCGEG--DLYLAGGVESM 119 (401)
T ss_pred HHHHCCCC--CEEEEEEecCC
Confidence 99999977 99999999987
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=105.38 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCcc-HHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKS-IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~-~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+.++.+|+.+|++++|+++|++|++||.+++++..+....+. .+....-..++ ..+++++++.++|++|..|+..|.
T Consensus 29 ~~~~~~L~~~a~~~AL~~agl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~--~~~~p~~~V~~~CaSg~~ai~~A~ 106 (394)
T PRK06445 29 NIRPEELAAMLINRLIEKTGIKPEEIDDIITGCALQVGENWLYGGRHPIFLARL--PYNIPAMAVDRQCASSLTTVSIGA 106 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCC--CCCCcchhhhhhhHHHHHHHHHHH
Confidence 467899999999999999999999999999998876543232 22222222233 246889999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. ++|||+++|.+
T Consensus 107 ~~I~sG~~--d~vLv~G~e~m 125 (394)
T PRK06445 107 MEIATGMA--DIVIAGGVEHM 125 (394)
T ss_pred HHHHcCCC--CEEEEeeeccc
Confidence 99999977 99999999976
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=102.77 Aligned_cols=96 Identities=8% Similarity=0.044 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+.+..+|+++|++++|+++|+++++||.|++++..........+..+...+|+ +.+++++.+.++|.+++.|+..|..
T Consensus 22 ~~~~~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl--~~~~p~~~v~~~caSg~~av~~Aa~ 99 (394)
T PLN02644 22 SLSATELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGL--PPSTICTTVNKVCASGMKAVMLAAQ 99 (394)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCC--CCCCceEEEeccchHHHHHHHHHHH
Confidence 46789999999999999999999999999998654322123344567788898 5568888899999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|++|.. +.|||++.|.+
T Consensus 100 ~I~sG~~--d~vlv~G~E~~ 117 (394)
T PLN02644 100 SIQLGIN--DVVVAGGMESM 117 (394)
T ss_pred HHHcCCC--CEEEEEeEEec
Confidence 9999977 99999999976
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=104.64 Aligned_cols=96 Identities=10% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+..+.+|+.+|++.+|+++|++|++||.+++|...+.......+..+...+|+ +..++++.|.++|++|+.|+..|..
T Consensus 24 ~~~~~~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~A~~ 101 (392)
T PRK06633 24 TTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTLIHAGI--PKEVPGYTINKVCGSGLKSVALAAN 101 (392)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHHHHCCC--CCCccchhhcchhHHHHHHHHHHHH
Confidence 56789999999999999999999999999999765433234566667788888 4579999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|++|.. +.+||++.|.+
T Consensus 102 ~I~sG~~--dvvla~G~E~m 119 (392)
T PRK06633 102 SIMTGDN--EIVIAGGQENM 119 (392)
T ss_pred HHHcCCC--CEEEEcccccC
Confidence 9999977 89999999987
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=103.57 Aligned_cols=96 Identities=7% Similarity=0.110 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+.++.+|+.+|++.+|++ +|++|++||.|++|+..+... ....+..+...+|+ +.+++++.|.++|++|..|+..|
T Consensus 23 ~~~~~~L~~~a~~~al~~~agi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~vP~~tV~~aCaSG~~Ai~~A 100 (401)
T PRK09050 23 SVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGL--PVSVPGTTINRLCGSGMDAVGTA 100 (401)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccchHHHHHHHHcCC--CCCCceEEEecccccHHHHHHHH
Confidence 567899999999999996 799999999999997654222 34577778899998 56799999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+..|++|.. +.+||++.|.+
T Consensus 101 ~~~I~sG~~--dvvlagGvEsm 120 (401)
T PRK09050 101 ARAIKAGEA--ELMIAGGVESM 120 (401)
T ss_pred HHHHHCCCC--CEEEEeccccc
Confidence 999999977 99999999988
|
|
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=98.00 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCC-cC----EEEEEcccCC----------------------CCC--ccHHHHHHHHhcc
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQ-IG----RLEVGSETVI----------------------DKS--KSIKTFLMQIFEK 106 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~-Id----~li~~t~s~~----------------------~~~--~~~a~~l~~~Lgl 106 (453)
....|++.|++++|+++|+++++ ++ .+++++..+. ... ...+.+|...+|+
T Consensus 71 ~~~~l~~~aa~~Al~dAGl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 150 (407)
T cd00828 71 RTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLS 150 (407)
T ss_pred HHHHHHHHHHHHHHHhCCCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHhCc
Confidence 35678999999999999998765 43 3555554221 111 4567788889897
Q ss_pred cCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 107 ~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
..-+.+.+..+|++++.||..|.++|++|.. +.+||+++|.
T Consensus 151 ---~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~ 191 (407)
T cd00828 151 ---SHGPIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVED 191 (407)
T ss_pred ---CCCCCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccc
Confidence 2446788999999999999999999999977 9999999986
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=102.49 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
..++.+|+..|++.+|++ +|++|++||.||+|+..+... .+..+..+...+|+ +.+++++.|.++|++|+.|+..|
T Consensus 23 ~~~~~~L~~~a~~~al~r~a~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl--~~~vp~~tV~~~CaSG~~Av~~A 100 (400)
T PRK13359 23 SVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGL--PHGVPGSTINRLCGSGMDAVGVA 100 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEeccchhHHHHHHHH
Confidence 356799999999999997 599999999999997654322 36688888899999 56799999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+.|++|.. +.+|+++.|.+
T Consensus 101 ~~~I~sG~~--divlagGvEsm 120 (400)
T PRK13359 101 ARAIKSGEA--ALMIAGGVESM 120 (400)
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999976 99999999988
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-08 Score=101.72 Aligned_cols=96 Identities=9% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCC-CCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVID-KSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~-~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+.++.+|+.+|++.+|++ ++++|++||.|++|+..... ..+..+..+...+|+ +.+++++.|.++|++|+.|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~a~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl--~~~~p~~~V~~~CaSG~~Ai~~a 99 (400)
T TIGR02430 22 SVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGL--PVSVPGTTVNRLCGSGLDAIGMA 99 (400)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEeechhhhHHHHHHHH
Confidence 567799999999999995 79999999999999765322 124577779999998 45799999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+|+++.|.+
T Consensus 100 ~~~I~sG~~--d~~la~G~E~m 119 (400)
T TIGR02430 100 ARAIKAGEA--DLLIAGGVESM 119 (400)
T ss_pred HHHHHCCCC--CEEEEeccccc
Confidence 999999976 99999999998
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=102.35 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCC--cCEEEEEcccCCC--CCccHHHHHHHHhccc----CCCCeeEEeeCCcChhHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQ--IGRLEVGSETVID--KSKSIKTFLMQIFEKY----GNTDIEGVDSTNACYGGT 125 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~--Id~li~~t~s~~~--~~~~~a~~l~~~Lgl~----G~~~~~~~dv~~aC~gg~ 125 (453)
+.+..+|+.+|++++|+++|++|+| ||.+++|+..... ..+.++..+...+|+. |-..++++.+.++|++|+
T Consensus 45 ~~s~~eL~~~a~~~al~~agl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caSG~ 124 (438)
T PTZ00455 45 NKTLEELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACASGG 124 (438)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHHHH
Confidence 5678999999999999999999999 9999998754321 2345566666565552 116788999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 126 AALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 126 ~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|+..|+..|++|.. +.|||+++|.+
T Consensus 125 ~Ai~~A~~~I~sG~~--dvvlv~G~E~m 150 (438)
T PTZ00455 125 LAVQSAWEALLAGTS--DIALVVGVEVQ 150 (438)
T ss_pred HHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999977 99999999986
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=100.37 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+.++.+|+.+|++.+|+++|++|++||.+++|+..+... ....+....-..|| +.+++++.|.++|++|..|+..|.
T Consensus 23 ~~~~~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl--~~~vP~~tV~~~CaSG~~Ai~~A~ 100 (390)
T PRK06504 23 GWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQATNVARNAVLASKL--PESVPGTSIDRQCGSSQQALHFAA 100 (390)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCCCceEEEechhhHHHHHHHHHH
Confidence 567899999999999999999999999999997653221 13344333333366 568999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.|++|.. +.+||++.|.+
T Consensus 101 ~~I~sG~~--dvvLagGvEsm 119 (390)
T PRK06504 101 QAVMSGTM--DIVIAAGVESM 119 (390)
T ss_pred HHHHCCCC--CEEEEeeeeec
Confidence 99999977 99999999987
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-08 Score=100.04 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+.+..+|+..|++.+|++ +|++|++||.+++|+...... ....+..+...+|+ +..++++.|.++|++|..|+..|
T Consensus 24 ~~~~~~L~~~~~~~al~~~agl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl--~~~~p~~~V~~~caSG~~Ai~~A 101 (387)
T PRK08947 24 NVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGI--PHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_pred CCCHHHHHHHHHHHHHHhccCcChHHhCeEEEEeccccccccccHHHHHHHHcCC--CCCCcceeeechhHHHHHHHHHH
Confidence 567899999999999997 799999999999997653222 23456667788888 45699999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+||++.|.+
T Consensus 102 ~~~I~sG~~--d~vlv~G~E~m 121 (387)
T PRK08947 102 ARAIMTGDG--DVFLIGGVEHM 121 (387)
T ss_pred HHHHHCCCC--CEEEEcccccc
Confidence 999999977 99999999977
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-06 Score=90.64 Aligned_cols=140 Identities=12% Similarity=0.014 Sum_probs=89.6
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh--CC---Cc------CeeeEcccceEEeccC----CCCCHHHHHHHHHHHHHH
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD--GV---SK------GKYTVGLGQDCMAFCS----EVEDVISMSLTVVTSLLE 70 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~---~~------~k~~~Gig~r~~av~~----~~ed~~~la~~Aa~~aL~ 70 (453)
.+.|.|.++|+..|--. +.+++.+.. |. .+ ..+...++-.--.+.. .......|+..|++++|+
T Consensus 10 ~~~VvITG~G~vs~~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~aa~~Al~ 88 (425)
T PRK06501 10 RPIVAVTGMGVVTSLGQ-GKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPESPFGASALSEALARLAAEEALA 88 (425)
T ss_pred CcCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccccccccCHHHHHHHHHHHHHHH
Confidence 46799999999998655 555554442 22 11 1111101100000000 011235688999999999
Q ss_pred HcCCCcCCcC------------------EEEEEcccC---------------CC-------CCccHHHHHHHHhcccCCC
Q 012909 71 KYKIDPTQIG------------------RLEVGSETV---------------ID-------KSKSIKTFLMQIFEKYGNT 110 (453)
Q Consensus 71 ~agi~~~~Id------------------~li~~t~s~---------------~~-------~~~~~a~~l~~~Lgl~G~~ 110 (453)
++|+++.+++ .++.++... .. ..++.+..|+..+|+
T Consensus 89 dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl---- 164 (425)
T PRK06501 89 QAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGT---- 164 (425)
T ss_pred HcCCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCC----
Confidence 9998654322 122222111 11 234678889999998
Q ss_pred CeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 111 DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 111 ~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+-+++++..+|+++..||..|.++|++|.. +.+||+++|.
T Consensus 165 ~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~ 204 (425)
T PRK06501 165 RGLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDG 204 (425)
T ss_pred CCCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 235688999999999999999999999977 9999999983
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=98.39 Aligned_cols=105 Identities=8% Similarity=-0.012 Sum_probs=85.7
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~ 118 (453)
+.+|+|+..+.. .++.+..+|+.+|++++|+++|++++|||.+++.+..+. .....+.+.||+ ...+...+.
T Consensus 8 aIvG~g~t~~~~-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~~~----~~~~~~~~~lGl---~~~~~~~v~ 79 (388)
T PRK08142 8 YIVGAYEHPTRK-APDKSVAQLHAEVAKGALADAGLSLADVDGYFCAGDAPG----LGPASMVDYLGL---KLRHVDSTE 79 (388)
T ss_pred EEEEEeecccee-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCCC----ccHHHHHHhCCC---CCeeecccc
Confidence 457889887754 356788999999999999999999999999875322211 112458899998 456778888
Q ss_pred CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 119 ~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++|.++..++..|...|++|.+ +.||||+.|+.
T Consensus 80 ~gg~s~~~a~~~A~~~I~sG~~--d~vLvvg~e~~ 112 (388)
T PRK08142 80 TGGSSYLAHVGHAAQAIAAGKC--SVALITLAGRP 112 (388)
T ss_pred CCcHHHHHHHHHHHHHHHcCCC--CEEEEEeeeec
Confidence 9999999999999999999977 99999999975
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=98.36 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+.+..+|+.+|++.+|+++|+++++||.+++|+..+.......+..+.-..|+ +...+++.|.++|++|+.|+..|..
T Consensus 28 ~~~~~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl--~~~~p~~~V~~~CaSG~~ai~~A~~ 105 (427)
T PRK09268 28 DASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSRDFNLTRECVLGSAL--SPYTPAYDLQQACGTGLEAAILVAN 105 (427)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCccccHHHHHHHHcCC--CCCCceeeeechhhHHHHHHHHHHH
Confidence 46789999999999999999999999999999765422123345554444455 4568899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|++|.. +.+||+++|.+
T Consensus 106 ~I~sG~~--d~vlvgG~E~m 123 (427)
T PRK09268 106 KIALGQI--DSGIAGGVDTT 123 (427)
T ss_pred HHHCCCC--CEEEEeeEEcc
Confidence 9999976 89999999977
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=97.21 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=82.1
Q ss_pred eEcccceEEeccCC---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccC-CCCCccHHHHHHHHhcccCCCCeeEE
Q 012909 40 TVGLGQDCMAFCSE---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV-IDKSKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 40 ~~Gig~r~~av~~~---~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~-~~~~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
.+|.+...+.--.. ..+..+|+.+|++++|+++|+++++||.|++++... .......+....-..|+ +..++++
T Consensus 6 Ivg~~~Tpf~~~~~~~~~~~~~~L~~~a~~~al~dagl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl--~~~~p~~ 83 (382)
T PRK07801 6 IVDAVRTPVGKRKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGL--PEEVPGV 83 (382)
T ss_pred EEecccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCC--CCCCcee
Confidence 45666665532111 257899999999999999999999999999986421 11112233333334666 3457888
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+.++|++++.|+..|...|++|.. +.|||++.|.+
T Consensus 84 ~v~~acaSg~~Av~~Aa~~I~sG~~--d~vLv~G~e~m 119 (382)
T PRK07801 84 TVDRQCGSSQQAIHFAAQAVMSGTQ--DLVVAGGVQNM 119 (382)
T ss_pred eecchhhhHHHHHHHHHHHHHCCCC--CEEEEcchhhh
Confidence 9999999999999999999999987 99999999965
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=97.33 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+.++.+|+.+|++.+|++ +|++|++||.+++|+...... ...++..+....|+ +..++++.|+++|++|..|+..|
T Consensus 22 ~~~~~~L~~~a~~~al~~~agl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~--~~~~p~~tV~~~CaSG~~Ai~~A 99 (385)
T TIGR02445 22 NTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQI--PHTSAAVTVNRLCGSSMQALHDA 99 (385)
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEecccccccccchHHHHHHHHCCC--CCCcchhhhhhhhHHHHHHHHHH
Confidence 567889999999999997 599999999999997643211 23355555556676 56689999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+||++.|.+
T Consensus 100 a~~I~sG~~--d~vlagG~E~m 119 (385)
T TIGR02445 100 ARAIMTGDA--DVCLVGGVEHM 119 (385)
T ss_pred HHHHHCCCC--CEEEEeeehhc
Confidence 999999976 89999999977
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-06 Score=88.42 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCC---------------------C-----CCccHHHHHHHHhcc
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVI---------------------D-----KSKSIKTFLMQIFEK 106 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~---------------------~-----~~~~~a~~l~~~Lgl 106 (453)
...|++.|++++|+++|++++++| .+++++..+. . .....+.++...||+
T Consensus 72 ~~~l~~~aa~~Al~dAGl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 151 (411)
T PRK07314 72 FIQYGIAAAKQAVEDAGLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGA 151 (411)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCC
Confidence 357899999999999999998888 5777764321 0 011255678888898
Q ss_pred cCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 107 ~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.| +.+-+..+|++++.||..|..+|++|.. +.|||.++|.
T Consensus 152 ~G----p~~tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~ 191 (411)
T PRK07314 152 KG----PNHSIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEA 191 (411)
T ss_pred CC----ccccchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecc
Confidence 33 4556678999999999999999999977 8999999986
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-07 Score=93.89 Aligned_cols=102 Identities=9% Similarity=0.001 Sum_probs=81.6
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~ 118 (453)
+.+|+|+..+.. .++.+..+|+.+|++++|+++|++++|||.+++.+.. ..+ ...+.+.||+ ....+...+.
T Consensus 7 ~IvG~g~t~~~r-~~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~---~~~--~~~l~~~lGl--~~~~~~~~v~ 78 (386)
T PRK07855 7 AIVGIGATEFSK-NSGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTMD---TNP--EIAVARALGI--GELKFFSRIH 78 (386)
T ss_pred EEEEeeeccccc-CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCc---ccc--HHHHHHHCCC--CCCcceeeec
Confidence 456888876643 3466889999999999999999999999999874432 122 2568899998 3324556788
Q ss_pred CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 012909 119 NACYGGTAALFNCVNWVESASWDGRYGLVVCT 150 (453)
Q Consensus 119 ~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~ 150 (453)
++|.++..+|..|...|++|.+ +.|||+++
T Consensus 79 ~gg~sg~~~~~~A~~~I~sG~~--d~vLv~g~ 108 (386)
T PRK07855 79 YGGGAACATVQQAAMAVATGVA--DVVVCYRA 108 (386)
T ss_pred CCcHHHHHHHHHHHHHHHCCCC--CEEEEEee
Confidence 9999999999999999999977 99999876
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=95.31 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=85.7
Q ss_pred eEcccceEEeccCCC--CCHHHHHHHHHHHHHHHcCCC--cCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEE
Q 012909 40 TVGLGQDCMAFCSEV--EDVISMSLTVVTSLLEKYKID--PTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 40 ~~Gig~r~~av~~~~--ed~~~la~~Aa~~aL~~agi~--~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
.+|+|+..+....++ .+..+|+.+|++++|+++|++ +++||.+++++..... .......+.+.||+ ......
T Consensus 8 IVGvG~t~~~~~~~~~~~s~~~L~~eA~~~Al~DAGl~~~~~dID~v~v~~~~~~~-~~~~~~~la~~lGl---~p~~~~ 83 (498)
T PRK08257 8 IVGVGQVTERPDDPAYGLEPVDLMAAAARAAAADAGADAVLEAIDSVAVVNQLSWR-YRDPPGLLAERLGA---DPARTV 83 (498)
T ss_pred EEEeeecccccCCcccCCCHHHHHHHHHHHHHHhcCCCcCHHHCCEEEEecccccc-ccCHHHHHHHHcCC---CCccee
Confidence 569998776431223 278999999999999999999 9999999987653221 22345788999998 334455
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
....+|.++..++..|+..|++|.. +.|||+++|.+
T Consensus 84 ~~~~GG~s~~~~v~~Aa~~IasG~a--dvVLv~G~E~~ 119 (498)
T PRK08257 84 YSPVGGNSPQRLVNEAALRIAAGEA--DVALVAGAEAQ 119 (498)
T ss_pred EecCCCHHHHHHHHHHHHHHHCCCC--CEEEEeeeeec
Confidence 5678899999999999999999977 99999999986
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=7e-06 Score=85.77 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCc-C----EEEEEcccCCC---------------------CC-----ccHHHHHHHHhcc
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQI-G----RLEVGSETVID---------------------KS-----KSIKTFLMQIFEK 106 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~I-d----~li~~t~s~~~---------------------~~-----~~~a~~l~~~Lgl 106 (453)
..|++.|++++|+++|++++++ + .+++++..+.. .. -..+.+|...+|+
T Consensus 83 ~~l~~~aa~~Al~dAgl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 162 (424)
T PRK06333 83 ILFAMAAAKEALAQAGWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGF 162 (424)
T ss_pred HHHHHHHHHHHHHhcCCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHhCC
Confidence 4689999999999999987766 2 56677653321 00 1235678888888
Q ss_pred cCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 107 ~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
. -+.+.+..+|++++.||..|..+|++|.. +.+||+++|.
T Consensus 163 ~----Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~ 202 (424)
T PRK06333 163 K----GPLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEA 202 (424)
T ss_pred C----CCCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 3 34566789999999999999999999977 8999999997
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.4e-07 Score=92.23 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=80.0
Q ss_pred eeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcC-CCc-CCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 39 YTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYK-IDP-TQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~ag-i~~-~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
+.+|+|+..+....++.+..+|+.+|++++|+++| +++ +|||.+++++.............+.+.||+. ..+.+.
T Consensus 7 aIvG~g~t~~~~~~~~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~---~~~~~~ 83 (385)
T PRK06066 7 AIVGIGWYGFRPTTPEVSFREMMFEAASRAYKDAGNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGA---MRPTMT 83 (385)
T ss_pred EEEEeeecCCcCCCCCCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEecCcccCcccccchhHHHHcccC---CCCeEE
Confidence 35788888765223478899999999999999999 997 7999998864211111112223466888872 233444
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+ |.++..++..|...|++|.+ ++|||++.|++
T Consensus 84 v---~~sg~~a~~~A~~aV~sG~~--d~vLv~g~~~~ 115 (385)
T PRK06066 84 V---AGDGLQGLAHAVMHINSGLA--NVVVVEAHSKP 115 (385)
T ss_pred E---eCcHHHHHHHHHHHHHcCCC--CEEEEEEEeec
Confidence 4 88999999999999999987 99999999875
|
|
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=74.87 Aligned_cols=47 Identities=30% Similarity=0.308 Sum_probs=42.1
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------------ceeeeecCCC
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------------AVAMLIGPDA 163 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------AvA~Ll~~~~ 163 (453)
||++++|+|++.||++|..+|++|.. ++||||++|.. |+|+||++++
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~~~~~~~~gDgAaA~vl~~~~ 65 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTDRQTAFIFGDGAAAVVLSRDE 65 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTHHHHHTTB-EEEEEEEEEEES
T ss_pred CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccccCcceeecchheEEEEEecC
Confidence 79999999999999999999999955 99999999996 9999999863
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=82.51 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=86.4
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC---c-Ceee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCc--
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDP-- 76 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~-- 76 (453)
+.|-|.++|+..|--. .+++.+.. |.+ + ..|. ...-..... ........++..|++++|+++|+++
T Consensus 2 ~rVvITG~G~vsp~G~--~~~~~~~l~~G~sgi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~Al~dagl~~~~ 77 (381)
T PRK05952 2 MKVVVTGIGLVSALGD--LEQSWQRLLQGKSGIKLHQPFPELPPLPLGLIG--NQPSSLEDLTKTVVTAALKDAGLTPPL 77 (381)
T ss_pred CeEEEEeeEEECcccC--HHHHHHHHHcCCCCeEeCCcccccccccceeec--cccccccHHHHHHHHHHHHhcCCCCCC
Confidence 4699999999999876 55544432 221 1 0110 000000000 0011233467789999999999864
Q ss_pred CCcCEEEEEcccCC--------------------CCC---------ccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHH
Q 012909 77 TQIGRLEVGSETVI--------------------DKS---------KSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127 (453)
Q Consensus 77 ~~Id~li~~t~s~~--------------------~~~---------~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~A 127 (453)
++++ |++||..+. +.. -..+.++...+|+.| +.+.+..+|++++.|
T Consensus 78 ~~~G-v~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G----p~~ti~~aCasg~~A 152 (381)
T PRK05952 78 TDCG-VVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG----PVLAPMAACATGLWA 152 (381)
T ss_pred CCEE-EEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC----ccccccchhHHHHHH
Confidence 4454 556664321 000 124567888888833 466788999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 128 LFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 128 L~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
|..|.++|++|.. +.+||.++|.
T Consensus 153 i~~A~~~i~~G~~--d~~lvgg~d~ 175 (381)
T PRK05952 153 IAQGVELIQTGQC--QRVIAGAVEA 175 (381)
T ss_pred HHHHHHHHHcCCC--CEEEEccccc
Confidence 9999999999976 8999999986
|
|
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=83.17 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHcCCC---cCCcCEEEEEccc---------------CCCCCc---------cHHHHHHHHhcccCC
Q 012909 57 VISMSLTVVTSLLEKYKID---PTQIGRLEVGSET---------------VIDKSK---------SIKTFLMQIFEKYGN 109 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~---~~~Id~li~~t~s---------------~~~~~~---------~~a~~l~~~Lgl~G~ 109 (453)
...|++.|++++|+++|++ +++|+.++.++.. +....| ..+.+|...||+.|
T Consensus 80 ~~~lal~Aa~eAl~dAgl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~G- 158 (410)
T PRK07103 80 SAQAALAAAREAWRDAALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRG- 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCCC-
Confidence 4579999999999999986 4566655533221 111111 24567788999832
Q ss_pred CCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 110 ~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+.+.+..+|++++.||..|..+|++|.. +.+||+++|.
T Consensus 159 ---~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~ 196 (410)
T PRK07103 159 ---EGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALM 196 (410)
T ss_pred ---CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccc
Confidence 4566899999999999999999999976 8999998863
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=83.70 Aligned_cols=90 Identities=12% Similarity=0.186 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHcCCC-cCCcCE----EEEEcccCCCC--------------------------CccHHHHHHHHhc
Q 012909 57 VISMSLTVVTSLLEKYKID-PTQIGR----LEVGSETVIDK--------------------------SKSIKTFLMQIFE 105 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~-~~~Id~----li~~t~s~~~~--------------------------~~~~a~~l~~~Lg 105 (453)
...|++.|++++|+++|++ +++++. +++++..+... .-..+.+|...+|
T Consensus 77 ~~~l~~~aa~~Al~dAGl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~ 156 (421)
T PTZ00050 77 ATHFAMAAAREALADAKLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHK 156 (421)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHHhC
Confidence 4789999999999999998 666553 44555432110 0123456677777
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+.| +.+.+..+|++++.||..|..+|++|.. +.+||.++|.
T Consensus 157 l~G----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~ 197 (421)
T PTZ00050 157 LKG----PSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEA 197 (421)
T ss_pred CCC----cccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccc
Confidence 732 4567789999999999999999999977 8999999885
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=90.06 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.+-++.+|+..+.+.+|++++++|++||.||+|...+... ...++....-..|| +..++++.|+..|.||+.|+..|
T Consensus 25 ~~~~~~~L~~~~~~~~l~r~~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~agl--p~~vp~~tvnr~C~Sgl~ai~~a 102 (417)
T PRK06025 25 AHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGY--DIKASGVTLDRFCGGGITSVNLA 102 (417)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCC--CCCCCeeeeccccchHHHHHHHH
Confidence 3568899999999999999999999999999998755432 35688888888898 78899999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+|+.+.|.+
T Consensus 103 a~~I~~G~~--~~~laGG~Esm 122 (417)
T PRK06025 103 AAQIMSGME--DLVIAGGTEMM 122 (417)
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999965 89999999988
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.9e-06 Score=85.81 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcC-----CcCEEEEEcccCCC-----------------CC---------ccHHHHHHHHhc
Q 012909 57 VISMSLTVVTSLLEKYKIDPT-----QIGRLEVGSETVID-----------------KS---------KSIKTFLMQIFE 105 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~-----~Id~li~~t~s~~~-----------------~~---------~~~a~~l~~~Lg 105 (453)
...|++.|+.++|+++|+++. +...|++||..+.. .. -..+.+|...+|
T Consensus 93 ~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~g 172 (437)
T PLN02836 93 FIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172 (437)
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHhC
Confidence 357899999999999998542 45667788743221 00 124567888888
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+. -+.+.+.++|++++.||..|..+|++|.. +.+||.++|.
T Consensus 173 l~----Gp~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~ 213 (437)
T PLN02836 173 FQ----GPNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTES 213 (437)
T ss_pred CC----CceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccc
Confidence 72 35677889999999999999999999977 8999988875
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=84.45 Aligned_cols=140 Identities=13% Similarity=0.099 Sum_probs=90.5
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CC---Cc-Ceee-EcccceEEeccC---------C----CCC-HHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GV---SK-GKYT-VGLGQDCMAFCS---------E----VED-VISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~---~~-~k~~-~Gig~r~~av~~---------~----~ed-~~~la~~Aa 65 (453)
..|-|.++++.+|--. +.+++.+.. |. .+ .++. ..+..+.-...+ . ..| ...++..|+
T Consensus 4 ~~VvItG~g~~~p~g~-~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 4 RRVVVTGMGMLSPVGN-TVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 5799999999999773 666655542 21 11 1110 001000000000 0 011 235788999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEcccCCC-----------------CC---------ccHHHHHHHHhcccCCCCeeEE
Q 012909 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 66 ~~aL~~agi~~~~Id----~li~~t~s~~~-----------------~~---------~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
+++|+++|+++.+.+ .|++||..+.. .. -.++.+|...+|+.| +.+
T Consensus 83 ~~Al~dAGl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~G----p~~ 158 (414)
T PRK08722 83 IQALDDSGLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRG----PNI 158 (414)
T ss_pred HHHHHHcCCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCC----Ccc
Confidence 999999999764433 36666643211 00 136678888888833 466
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+..+|++++.||..|.++|++|.. +.+||.++|..
T Consensus 159 ti~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~ 194 (414)
T PRK08722 159 AISTACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKA 194 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCC--CEEEEeccccc
Confidence 7789999999999999999999977 99999999874
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8e-07 Score=84.40 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=90.1
Q ss_pred cCeeeEcccceEEeccC--CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee
Q 012909 36 KGKYTVGLGQDCMAFCS--EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 36 ~~k~~~Gig~r~~av~~--~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~ 113 (453)
|..|..|+|+.++--|. ++-|-.+|+.+|...+|+++++..++|+.-++|-..++...- .+..-.+|+ +.++
T Consensus 6 ~rvyvvgvgmtkf~kpg~~~~~dypd~a~ea~tkal~da~ikys~vqqa~vgyvfgdstcg---qraiyevgm---tgip 79 (408)
T KOG1406|consen 6 PRVYVVGVGMTKFEKPGRVADWDYPDFAKEAITKALQDAGIKYSEVQQAVVGYVFGDSTCG---QRAIYEVGM---TGIP 79 (408)
T ss_pred ceEEEEecceeeecCCCcccCCCCchHHHHHHHHHHHhcCCCHHHHHhhhheeeecCCccc---hHHHHhccc---cCcc
Confidence 45577899998874332 355778999999999999999999999988877666654322 233347787 8899
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+.++|+|++|..||.+|.+.|++|.. +.||..+.|++
T Consensus 80 i~nvnnncatgssalflakqiiesgn~--dcvlalgfekm 117 (408)
T KOG1406|consen 80 IYNVNNNCATGSSALFLAKQIIESGNS--DCVLALGFEKM 117 (408)
T ss_pred eeeccCccccCchHHHHHHHHHhcCCc--ceEEeechhhh
Confidence 999999999999999999999999966 89999999998
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=83.09 Aligned_cols=89 Identities=16% Similarity=0.040 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC-----------------CC---------ccHHHHHHHHhccc
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKY 107 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~-----------------~~---------~~~a~~l~~~Lgl~ 107 (453)
.-|++.|++++|+++|+++++++ .|++||..+.. .. -..+.+|...+|+.
T Consensus 72 ~~~~l~aa~eAl~dAGl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~ 151 (399)
T cd00832 72 TRLALAAADWALADAGVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMR 151 (399)
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCC
Confidence 56889999999999999876543 36667654311 00 12456788888883
Q ss_pred CCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 108 GNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 108 G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
| +++-+..+|++++.||..|..+|++| . +.+||.++|..
T Consensus 152 G----p~~ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~ 190 (399)
T cd00832 152 G----PSGVVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSA 190 (399)
T ss_pred C----CcccccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccc
Confidence 3 35567899999999999999999999 5 79999999873
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-05 Score=79.86 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC--------------------------CCccHHHHHHHHhcc
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEK 106 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~--------------------------~~~~~a~~l~~~Lgl 106 (453)
...|+..|++++|+++|+++++++ .+++++..+.. .....+.+|...+|+
T Consensus 72 ~~~l~~~Aa~~AL~dAGl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl 151 (406)
T PRK08439 72 FIQLGLKAAREAMKDAGFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGL 151 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCC
Confidence 467899999999999999987776 35555432110 011467788999998
Q ss_pred cCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 107 YGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 107 ~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.| +.+.+..+|++++.||..|.++|++|.. +.+||+++|.
T Consensus 152 ~G----p~~~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~ 191 (406)
T PRK08439 152 KG----PNLSSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAES 191 (406)
T ss_pred CC----CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchh
Confidence 33 3566779999999999999999999977 9999999985
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-05 Score=79.60 Aligned_cols=89 Identities=13% Similarity=0.083 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHcCCCc------CCcCEEEEEcccCCC-----------------CC--------c-cHHHHHHHHhc
Q 012909 58 ISMSLTVVTSLLEKYKIDP------TQIGRLEVGSETVID-----------------KS--------K-SIKTFLMQIFE 105 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~------~~Id~li~~t~s~~~-----------------~~--------~-~~a~~l~~~Lg 105 (453)
..|++.|++++|+++|+.. +.+ .|++||..+.. .. + ..+.+|...+|
T Consensus 74 ~~~al~aa~~Al~dAGl~~~~~~~~~r~-Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~ 152 (405)
T PRK09116 74 SLMATRASELALEDAGLLGDPILTDGRM-GIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFG 152 (405)
T ss_pred HHHHHHHHHHHHHHcCCCCccccCCCcE-EEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhC
Confidence 4689999999999999832 233 45566643210 01 1 25677888889
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.| +.+.+..+|++++.||..|.++|++|.. +.+||.++|..
T Consensus 153 ~~G----p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~ 194 (405)
T PRK09116 153 LKG----RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEEL 194 (405)
T ss_pred CCC----CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhc
Confidence 843 4566789999999999999999999977 89999998863
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-05 Score=78.07 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=45.3
Q ss_pred cHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 95 SIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 95 ~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
..+.+|+..||+.| +.+.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 138 ~~a~~ia~~lgl~G----p~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~ 189 (392)
T PRK09185 138 SLADFLRAYLGLSG----PAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDS 189 (392)
T ss_pred HHHHHHHHHhCCCC----CcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccc
Confidence 46788999999832 5777888999999999999999999977 9999999984
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.2e-06 Score=85.55 Aligned_cols=91 Identities=12% Similarity=0.170 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+..+.+|+..|++.+++ |++ ++||.+++|+..+.. ...+..+...+|+ +..++++.+.++|++|+.|+..|.+
T Consensus 22 ~~~~~~L~~~a~~~~~~--gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~Gl--~~~~p~~tV~~~CaSG~~Ai~~a~~ 94 (361)
T PRK06690 22 DYEVQQLAAPLLTFLSK--GME-REIDDVILGNVVGPG--GNVARLSALEAGL--GLHIPGVTIDRQCGAGLEAIRTACH 94 (361)
T ss_pred CCCHHHHHHHHHHHHHc--cch-hhcCEEEEEecCCCc--chHHHHHHHHcCC--CCCCCceehhhhhhHHHHHHHHHHH
Confidence 35679999999999865 896 899999999875442 3344457788888 4489999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++|.. +.+||+++|.+
T Consensus 95 ~I~sG~~--d~~l~gG~E~m 112 (361)
T PRK06690 95 FIQGGAG--KCYIAGGVEST 112 (361)
T ss_pred HHHCCCC--CEEEEeccccc
Confidence 9999976 89999999988
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.8e-06 Score=84.29 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=74.4
Q ss_pred eeEcccceEEeccCCCCCH-HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee
Q 012909 39 YTVGLGQDCMAFCSEVEDV-ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS 117 (453)
Q Consensus 39 ~~~Gig~r~~av~~~~ed~-~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv 117 (453)
+.+|+|+..+...++..+. .+|+.+|++++|+++|++++|||.++.++.............+...+|+ ....+...+
T Consensus 5 aIvG~g~t~~~~~~~~~~~~~el~~eA~~~Al~DAgl~~~dID~~~~~~~~~~~~~~~~~~~~~~~~G~--~~~~~~~~v 82 (352)
T PRK07937 5 AVVGFAQAPHVRRTDGTTNGVEMLMPCFAELYAELGITKSDIGFWCSGSSDYLAGRAFSFISAIDSIGA--VPPINESHV 82 (352)
T ss_pred EEEEeeccccccCCCCCCcHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccccccccccchhhHHhhccC--CCCCceEEe
Confidence 3578888877542223444 8999999999999999999999988654321111111112334456665 233344444
Q ss_pred CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 118 ~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+ +|..|+..|...|++|.. +.|||++.|++
T Consensus 83 ~~---~g~~a~~~A~~aI~sG~~--d~VLv~g~~k~ 113 (352)
T PRK07937 83 EM---DAAWALYEAWVKLLTGEV--DTALVYGFGKS 113 (352)
T ss_pred cC---cHHHHHHHHHHHHhcCCC--CEEEEEEeccc
Confidence 43 577899999999999987 99999999975
|
|
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00034 Score=68.45 Aligned_cols=96 Identities=17% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVE 136 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~ 136 (453)
-..|..+|++.+|+++++.++|||.++-|---..- -.+++.++.|++ +.+-+-.||+....+|.+|..+|.
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLlnQ~---i~s~f~ar~l~i------Pf~GlygACST~~e~l~laa~~vd 121 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDIDYLFAGDLLNQI---ISSSFAARDLGI------PFLGLYGACSTMMESLALAAMLVD 121 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-SEEEEEETTCCC---CHHHHHHHHHT--------EEEB--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCeEEEehhhhhhh---HHHHHHHHhcCC------CccchhhHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999987644432 457888888885 588899999999999999999999
Q ss_pred hCCCCCCeEEEEEeecc---------------------------ceeeeecCCC
Q 012909 137 SASWDGRYGLVVCTDTA---------------------------AVAMLIGPDA 163 (453)
Q Consensus 137 sg~~~~~~aLVv~~d~~---------------------------AvA~Ll~~~~ 163 (453)
+|.. ++||+.++-=. |.|+||++.+
T Consensus 122 gg~a--~~vla~tSSH~~tAERQfR~P~EyG~Qrp~tAqwTVTGaGa~il~~~~ 173 (329)
T PF07451_consen 122 GGFA--DYVLAATSSHFATAERQFRFPTEYGGQRPPTAQWTVTGAGAAILSKEG 173 (329)
T ss_dssp TTS---SEEEEEEEE-CCHHHHHT---GGGT----TT--EE--EEEEEEEESS-
T ss_pred CCCc--ceEEEEeccccchhhhhccCchhccCCCCCcccEEEeceEEEEEecCC
Confidence 9977 89998876432 9999999875
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4e-05 Score=79.48 Aligned_cols=138 Identities=12% Similarity=0.000 Sum_probs=88.8
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh--CCCcCee--------eEc-ccc---eEEeccCC----C-CCHHHHHHHHHH
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSKGKY--------TVG-LGQ---DCMAFCSE----V-EDVISMSLTVVT 66 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~~k~--------~~G-ig~---r~~av~~~----~-ed~~~la~~Aa~ 66 (453)
++.|-|.+||+..|--. +.+++.+.. |.+...+ ..+ +++ +.. ++.. . .....|+..|++
T Consensus 5 ~~rVvITGiG~vsp~G~-~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~r~~~~a~~Aa~ 82 (398)
T PRK06519 5 PNDVVITGIGLVSSLGE-GLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQ-IPKRGDQRQMETWQRLGTYAAG 82 (398)
T ss_pred CCCEEEEcceEECCCCC-CHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhc-CCchhhhhccCHHHHHHHHHHH
Confidence 56899999999998654 555544442 2221011 000 111 000 1010 1 124568999999
Q ss_pred HHHHHcCCCcC-----CcCEEEEEcccCCC-----------------------------CCc---------cHHHHHHHH
Q 012909 67 SLLEKYKIDPT-----QIGRLEVGSETVID-----------------------------KSK---------SIKTFLMQI 103 (453)
Q Consensus 67 ~aL~~agi~~~-----~Id~li~~t~s~~~-----------------------------~~~---------~~a~~l~~~ 103 (453)
++|+++|+++. +++ |+++|..+.. ..| ..+.+|...
T Consensus 83 ~Al~dAGl~~~~~~~~r~G-vivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~ 161 (398)
T PRK06519 83 LALDDAGIKGNEELLSTMD-MIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISIV 161 (398)
T ss_pred HHHHHcCCCCCCCCccceE-EEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHHH
Confidence 99999998543 333 4555543320 011 255677888
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+|+.| +.+.+..+|++++.||..|..+|++|.. +.+||.++|.
T Consensus 162 ~gl~G----p~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~ 204 (398)
T PRK06519 162 HKVTG----SSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYN 204 (398)
T ss_pred hCCCC----ccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 88843 4667889999999999999999999976 8999999986
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.9e-05 Score=81.57 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=88.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--C---CCc-Ce-----eeEcc-cc-eEEe---ccCC----CCC-HHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--G---VSK-GK-----YTVGL-GQ-DCMA---FCSE----VED-VISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g---~~~-~k-----~~~Gi-g~-r~~a---v~~~----~ed-~~~la~~Aa 65 (453)
+.|.|.++|+.+|--. +.+++.+.. | +.+ .. |..-+ |. +.+. +..+ ..| ...|++.|+
T Consensus 129 ~rVvITG~G~vtp~G~-~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa 207 (540)
T PLN02787 129 RRVVVTGMGVVSPLGH-DPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207 (540)
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence 4799999999999763 666655443 2 211 11 10000 10 0000 0000 112 245889999
Q ss_pred HHHHHHcCCCcCC---cC----EEEEEcccCCCC----------------C---------ccHHHHHHHHhcccCCCCee
Q 012909 66 TSLLEKYKIDPTQ---IG----RLEVGSETVIDK----------------S---------KSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 66 ~~aL~~agi~~~~---Id----~li~~t~s~~~~----------------~---------~~~a~~l~~~Lgl~G~~~~~ 113 (453)
+++|+++|++++. ++ .|++||..+... . -..+.+|...+|+. -+
T Consensus 208 ~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~----Gp 283 (540)
T PLN02787 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWM----GP 283 (540)
T ss_pred HHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCC----CC
Confidence 9999999997642 21 466777543200 0 12345778888873 34
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.+.+..||+++..||..|.++|++|.. +.+||.++|.
T Consensus 284 ~~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~ 320 (540)
T PLN02787 284 NYSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDA 320 (540)
T ss_pred ccccccccccHHHHHHHHHHHHHcCCC--CEEEEecccc
Confidence 667789999999999999999999977 8999999995
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-05 Score=77.55 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHcCC--CcCCcCEEEEEcccCCC-------------C----Cc---------cHHHHHHHHhcccC
Q 012909 57 VISMSLTVVTSLLEKYKI--DPTQIGRLEVGSETVID-------------K----SK---------SIKTFLMQIFEKYG 108 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi--~~~~Id~li~~t~s~~~-------------~----~~---------~~a~~l~~~Lgl~G 108 (453)
...++..|++++++++|+ ++++++.+ +||..+.. . .| ..+.+|...+|+.|
T Consensus 4 ~~~~~~~a~~~a~~~a~~~~~~~r~Gv~-~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~G 82 (342)
T PRK14691 4 WWRYKWITFHPSLTHADNTEKQERTATI-IGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFKG 82 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEE-EecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCCC
Confidence 356889999999999995 56677644 45532221 0 01 25567788888733
Q ss_pred CCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 109 ~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+.+..+|++++.||..|.++|++|.. +.+||.++|..
T Consensus 83 ----p~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~ 121 (342)
T PRK14691 83 ----PIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAV 121 (342)
T ss_pred ----CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccc
Confidence 3566789999999999999999999977 89999998863
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=75.61 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=88.6
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--C---CCc-Cee-eEcccceEEecc--------C-----CCCCHHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--G---VSK-GKY-TVGLGQDCMAFC--------S-----EVEDVISMSLTVVT 66 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g---~~~-~k~-~~Gig~r~~av~--------~-----~~ed~~~la~~Aa~ 66 (453)
..|-|.++|+..|--. +.+++.+.. | +.+ ..| ..++..+....+ + .-.....|++.|++
T Consensus 2 ~rVvITG~G~vsp~G~-~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIGN-NQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCCC-CHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 4689999999999764 556554442 2 211 111 011111111100 0 01123568899999
Q ss_pred HHHHHcCCCcCCcC----EEEEEcccCCC-----------------C-C---------ccHHHHHHHHhcccCCCCeeEE
Q 012909 67 SLLEKYKIDPTQIG----RLEVGSETVID-----------------K-S---------KSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 67 ~aL~~agi~~~~Id----~li~~t~s~~~-----------------~-~---------~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
++|+++|+++.+++ .|+++|..+.. . . -..+.+|...+|+.| +.+
T Consensus 81 ~Al~dAGl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~G----p~~ 156 (406)
T PRK07967 81 QAIADAGLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKG----VNY 156 (406)
T ss_pred HHHHHcCCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCC----Ccc
Confidence 99999998754332 35555532210 0 0 125677888989833 355
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+..+|++++.||..|.++|++|.. +.+||.++|..
T Consensus 157 tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~ 192 (406)
T PRK07967 157 SISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEEL 192 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 6899999999999999999999977 89999998753
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00079 Score=70.36 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCC---CcCCcCEEEEEcccCCC-----------------C---------CccHHHHHHHHhcccC
Q 012909 58 ISMSLTVVTSLLEKYKI---DPTQIGRLEVGSETVID-----------------K---------SKSIKTFLMQIFEKYG 108 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi---~~~~Id~li~~t~s~~~-----------------~---------~~~~a~~l~~~Lgl~G 108 (453)
.-|++.|++++|+++|+ +++.++ +++||..+.. . .-..+.++...+|+.|
T Consensus 84 ~~~~l~aa~~AledAg~~~~~~~r~G-v~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G 162 (418)
T PRK07910 84 QRMSTVLGRRVWENAGSPEVDTNRLM-VSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKA 162 (418)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccEE-EEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCC
Confidence 34888999999999996 455565 4455543210 0 0124455666667632
Q ss_pred CCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 109 ~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+.+..+|++++.||..|.++|++|.. +.+||.++|..
T Consensus 163 ----~~~ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~ 201 (418)
T PRK07910 163 ----GVITPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETR 201 (418)
T ss_pred ----CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence 3556689999999999999999999976 89999999874
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=74.14 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCc-----CEEEEEcccCCC---------------C---------CccHHHHHHHHhccc
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQI-----GRLEVGSETVID---------------K---------SKSIKTFLMQIFEKY 107 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~I-----d~li~~t~s~~~---------------~---------~~~~a~~l~~~Lgl~ 107 (453)
..-|++.|+.++|+++|+++.++ -.|++|+..+.. . .-..+.+|...+|+.
T Consensus 87 ~~~~~l~aa~~Al~dAg~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~ 166 (254)
T PF00109_consen 87 QSRLALAAAREALEDAGLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGLR 166 (254)
T ss_dssp HHHHHHHHHHHHHHHHTSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB-
T ss_pred hhhHHHHHhhhhcccccccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCCC
Confidence 35789999999999999988533 235566655511 0 112567889999983
Q ss_pred CCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 108 GNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 108 G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
| +.+-+..+|++++.||..|..+|++|.. +.+||.++|..
T Consensus 167 G----~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~ 206 (254)
T PF00109_consen 167 G----PSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAP 206 (254)
T ss_dssp S----SEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--
T ss_pred C----ccccccccccccccccchhccccccccc--ccccccccccc
Confidence 3 3566889999999999999999999976 99999999943
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.4e-05 Score=76.58 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHc--CCCcCCcCEEEEEcccCCC-CCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKY--KIDPTQIGRLEVGSETVID-KSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~a--gi~~~~Id~li~~t~s~~~-~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
..++.....+..+++. ++++.+||.+++|+..+.. .....+..+...+|+ +.+++++.++.+|.+|..|+..|+.
T Consensus 27 ~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl--~~~~p~~~V~~~c~SG~~Av~~A~~ 104 (392)
T COG0183 27 AEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGL--PGSVPAVTVNRACASGLAAVRLAAQ 104 (392)
T ss_pred HHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCC--CCCCCceEEeccchhHHHHHHHHHH
Confidence 3444444444444332 4666678888988765542 355788899999998 4569999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|++|.. +.+|+++.|.+
T Consensus 105 ~I~sG~~--dvvlagG~E~m 122 (392)
T COG0183 105 AIASGEA--DVVLAGGVEKM 122 (392)
T ss_pred HHHCCCC--CEEEEEeeeec
Confidence 9999976 99999999998
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0033 Score=78.25 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 96 IKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 96 ~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++.+|...||+.| +.+-+..||+|++.||..|+++|++|.. +.+||.+++..
T Consensus 185 ~A~RIS~~f~L~G----ps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~ 236 (2582)
T TIGR02813 185 ISGRIANRFDLGG----MNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTD 236 (2582)
T ss_pred HHHHHHHHhCCCC----CcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceee
Confidence 4678888888833 4677899999999999999999999976 89999888763
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=64.95 Aligned_cols=96 Identities=7% Similarity=0.085 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
.-.+.+|+.-|.+.+|+++.++|++++-+|+|..-.-...-..+....---|| +..+++..++.-|++|+.|+.+|.+
T Consensus 27 sl~A~~Lgsvaikaalera~v~~~~v~eVi~GnVl~AnlGQapaRQaalgAGl--p~sv~~tTvNkvCaSgmKAv~laaQ 104 (396)
T KOG1390|consen 27 SLTATELGSVAIKAALERAVVPPSDVAEVIFGNVLSANLGQAPARQAALGAGL--PYSVPATTVNKVCASGMKAVILAAQ 104 (396)
T ss_pred cCchhhHHHHHHHHHHHhcCCCHHHhhhhhhccccccccCcchHHHHHhhcCC--CcceeeEeehhhhhhhHHHHHHHHH
Confidence 45678999999999999999999999999998765544444455555555566 6788999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
-|+.|.. +.++..+.|.|
T Consensus 105 sI~~G~~--divVaGGmEsM 122 (396)
T KOG1390|consen 105 SIQTGHA--DIVVAGGMESM 122 (396)
T ss_pred HHhcCCc--cEEEecccchh
Confidence 9999955 78888888887
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0065 Score=70.47 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCCCCc-------------------cHHHHHHHHhcccCCCCeeEEe
Q 012909 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVIDKSK-------------------SIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~~~~-------------------~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
|..+.+.++|+++|++|+.+. .|++|.....+... -.+..|...|++.| +.+.
T Consensus 94 llLe~aw~AlEdAG~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~G----Ps~~ 169 (1061)
T COG3321 94 LLLEVAWEALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLSG----PSVT 169 (1061)
T ss_pred HHHHHHHHHHHHcCCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCCC----CCcc
Confidence 889999999999999999888 56666655544322 16678889999844 4677
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|..+|++++.|++.|+..|.+|.. +.+|+-+..+.
T Consensus 170 vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~ 204 (1061)
T COG3321 170 VDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLV 204 (1061)
T ss_pred ccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEec
Confidence 899999999999999999999955 88888877765
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0064 Score=63.19 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHcCCC-cCCcC---EEEEEcccCC-C---------------C--C--------c-cHHHHHHHHh
Q 012909 56 DVISMSLTVVTSLLEKYKID-PTQIG---RLEVGSETVI-D---------------K--S--------K-SIKTFLMQIF 104 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~-~~~Id---~li~~t~s~~-~---------------~--~--------~-~~a~~l~~~L 104 (453)
....+++.|+.++|+++|++ ...++ .+++||..+. . . . + ..+..++..+
T Consensus 70 ~~~~~a~~Aa~eAl~dAgl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~ 149 (412)
T COG0304 70 RFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVF 149 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHh
Confidence 35789999999999999997 33342 2334443211 0 0 0 1 3456677788
Q ss_pred cccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 105 EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 105 gl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|+.| +.+.+..+|+++..|+..|.++|+.|.. +.+|+.++|-.
T Consensus 150 g~~G----~~~~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~ 192 (412)
T COG0304 150 GLKG----PNYTPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAA 192 (412)
T ss_pred CCCC----CcCChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence 8743 3456789999999999999999999977 89999999763
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0017 Score=61.99 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcc-cC-CCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK-YG-NTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl-~G-~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+-+..+|.+.|++.+|+.+++.++.+|.||++..-. +.+-+.|+.+..|| .| +...+++.++--|.+|.+++.++
T Consensus 25 g~~aTdL~~~AakAAL~aa~v~~e~VD~VI~GNV~a---SSsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsiVNg 101 (396)
T KOG1391|consen 25 GLSATDLGVVAAKAALKAANVGAEAVDHVIMGNVLA---SSSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSIVNG 101 (396)
T ss_pred CcchhhHHHHHHHHHHhhcCCChhhcceEEEeeeee---ccCCceEeeeccccccCCcCccCceeehhhhcccHHHHHhh
Confidence 456789999999999999999999999999886422 12234566666665 12 56788999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeeccce
Q 012909 132 VNWVESASWDGRYGLVVCTDTAAV 155 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~Av 155 (453)
++-|.-|.. +.||.-+.|.+.-
T Consensus 102 aQ~I~vgea--~ivL~GGtEnMSq 123 (396)
T KOG1391|consen 102 AQEICVGEA--EIVLCGGTENMSQ 123 (396)
T ss_pred HHHhhcCcc--eEEEecCcccccc
Confidence 999999865 7777778887733
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0029 Score=61.24 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHH
Q 012909 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNW 134 (453)
Q Consensus 55 ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~ 134 (453)
--+.+|+.+|...+|++..++.+.||.||+||.-..-....++..-+-.-|. +..+++..+..+|-+.-.|+.....+
T Consensus 64 lmphdlar~al~~ll~kt~lpke~~dyii~gtviqevktsniareaal~agf--sdktpahtvtmacissn~amttgmgl 141 (465)
T KOG1392|consen 64 LMPHDLAREALKALLEKTKLPKEQLDYIICGTVIQEVKTSNIAREAALLAGF--SDKTPAHTVTMACISSNVAMTTGMGL 141 (465)
T ss_pred hchhHHHHHHHHHHHHhccCCHHHhceeeehhhHHHHhcchHHHHHHHhcCC--CCCCccceeeeehhccchhhhcccee
Confidence 3467999999999999999999999999999976554444566665556666 67788999999999999999999999
Q ss_pred HHhCCCCCCeEEEEEeecc
Q 012909 135 VESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 135 v~sg~~~~~~aLVv~~d~~ 153 (453)
|++|.+ +.++.-+.|.+
T Consensus 142 iatg~~--dvivaggvelm 158 (465)
T KOG1392|consen 142 IATGNA--DVIVAGGVELM 158 (465)
T ss_pred EeeCCc--CEEEEcceeec
Confidence 999976 44444455655
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.029 Score=55.14 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHh-cccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF-EKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~L-gl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
+..+-+|-..+.+.++++.+++|+.|+-|++|++-.+... ...+.++..+ |+ +..++...++--|++|+.|+...+
T Consensus 58 dt~pDeLl~~vl~a~ie~t~~dp~~igdi~vG~vL~pg~g-a~e~R~a~~~ag~--P~tvpv~tvNRqCsSGLqaVadiA 134 (435)
T KOG1389|consen 58 DTRPDELLAAVLRAVIEKTNLDPSLIGDIVVGTVLAPGSG-ASECRMAAFYAGF--PETVPVRTVNRQCSSGLQAVADIA 134 (435)
T ss_pred cCChHHHHHHHHHHHHhhcCCCHHHhcceeeeeccCCCcc-hHHHHHHHHHcCC--CcccchhhhhhhhhhHHHHHHHHH
Confidence 3456689999999999999999999999999998766533 5566665544 55 667777778899999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.-|++|.+ +..|-.+.|-+
T Consensus 135 ~~Ir~G~y--dIGla~GvESM 153 (435)
T KOG1389|consen 135 AKIRAGFY--DIGLAAGVESM 153 (435)
T ss_pred HHHhcCce--eeecccchhhh
Confidence 99999988 77888888876
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.13 Score=48.94 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCC---------------CCc-----cHHHHHHHHhcccCCCCeeEE
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID---------------KSK-----SIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~---------------~~~-----~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
...-|++.++..++.+. .++|.+|++|..++- .+| |+-+-+...+.+.-....+..
T Consensus 33 ~~~rla~~~a~~~~~~~----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~~~~~t 108 (218)
T PF13723_consen 33 RLSRLALEAALECLAED----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKNTGPNT 108 (218)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCCCCceE
Confidence 47889999999998653 467899999876641 223 122223334443112345566
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------------ceeeeecCCC
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------------AVAMLIGPDA 163 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------AvA~Ll~~~~ 163 (453)
-+..+=.++..||.-|..+++.| . +.||||+.|-. |+|++|++..
T Consensus 109 al~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~~~~~~~~~~~A~al~L~~~~ 171 (218)
T PF13723_consen 109 ALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEFRPERDPPFPYALALVLSPGD 171 (218)
T ss_pred EEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhcccccCCCcCEEEEEEecCCC
Confidence 67788889999999999999998 4 89999999975 7888887764
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.074 Score=42.84 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC----CcChhHHHHHHHHHHHHHhCC-CCCC
Q 012909 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST----NACYGGTAALFNCVNWVESAS-WDGR 143 (453)
Q Consensus 69 L~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~----~aC~gg~~AL~~A~~~v~sg~-~~~~ 143 (453)
|+++|++++|||.++.... ++.....+.+.+|+ ++......+. .+|++-..+| ...++.|. .||+
T Consensus 1 L~~~g~~~~did~~i~hq~-----~~~~~~~~~~~lgi--~~~~~~~~~~~~Gn~~sa~~~~~L---~~~~~~g~~~~Gd 70 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQA-----SKKILDSIAKRLGI--PPERFPDNLAEYGNTGSASIPINL---ADALEEGRIKPGD 70 (90)
T ss_dssp HHHTT--GGGESEEEE-SS-----SHHHHHHHHHHHTS---GGGBE-THHHH-B-GGGHHHHHH---HHHHHTTSSCTTE
T ss_pred CccccCCHHHCCEEEeCCC-----CHHHHHHHHHHcCC--cHHHHHHHHhccCcchhhhHHHHH---HHHHHcCCCCCCC
Confidence 6899999999999998653 33445558889998 4443333332 2444444444 34444432 2678
Q ss_pred eEEEEEeec
Q 012909 144 YGLVVCTDT 152 (453)
Q Consensus 144 ~aLVv~~d~ 152 (453)
++|+++.-.
T Consensus 71 ~vl~~~~G~ 79 (90)
T PF08541_consen 71 RVLLVGFGA 79 (90)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEEEh
Confidence 999998765
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.098 Score=52.53 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCcC---CcC----EEEEEcccCC---------------------CCCc-----cHHHHHHH
Q 012909 56 DVISMSLTVVTSLLEKYKIDPT---QIG----RLEVGSETVI---------------------DKSK-----SIKTFLMQ 102 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~---~Id----~li~~t~s~~---------------------~~~~-----~~a~~l~~ 102 (453)
+...|++.|+.++|+++++.+. +.| .|.+||..+. +..| -.+.+|.-
T Consensus 93 ~~~~~al~aa~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm 172 (440)
T KOG1394|consen 93 KFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSM 172 (440)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhh
Confidence 3567999999999999997665 222 3445553321 1111 13456777
Q ss_pred HhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 103 IFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 103 ~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|+-| +...+..||+.|..++-.|.++|+.|.. +..|.-++|.+
T Consensus 173 ~~gl~G----pnhsvSTACATg~h~igda~n~Ir~Gda--DvmlAGgsE~~ 217 (440)
T KOG1394|consen 173 KYGLRG----PNHSVSTACATGNHCIGDAFNFIRLGDA--DVMLAGGSEAC 217 (440)
T ss_pred hhcCcC----CchhhHhhhhhccchHHHHHHHHHhCcc--ceeeccCccee
Confidence 778733 3445688999999999999999999955 67777777876
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.25 Score=50.32 Aligned_cols=100 Identities=11% Similarity=-0.016 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEE-EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC---C--cChhHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEV-GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST---N--ACYGGTAALFNCVNW 134 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~-~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~---~--aC~gg~~AL~~A~~~ 134 (453)
..+|.+++|+++|++|++||.|+. +|.+.. ....-+.-+.+.++.. ....+....+ . +.++|...+..+...
T Consensus 236 l~~ai~~AL~~agl~~~dId~v~ah~~gt~~-~d~~e~~A~~~~f~~~-~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~ 313 (348)
T PRK06147 236 LTQAIRAALAEAGCGLEDMDYRIADLNGEQY-RFKEAALAEMRLFRVR-KEFFDLWHPAECIGEIGAAIGPALLGVALAA 313 (348)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEcCCCCCcc-chHHHHHHHHHHhhhc-cCCCceecchHhhcchHHHHHHHHHHHHHHH
Confidence 458899999999999999999884 333332 2223334455566531 1122222222 2 333444445555566
Q ss_pred HHhCCCCCCeEEEEEeecc--ceeeeecCC
Q 012909 135 VESASWDGRYGLVVCTDTA--AVAMLIGPD 162 (453)
Q Consensus 135 v~sg~~~~~~aLVv~~d~~--AvA~Ll~~~ 162 (453)
++.|..|+.++||.+++-- =+||+|+..
T Consensus 314 ~~~g~~~g~~~L~~s~~d~g~r~a~~l~~~ 343 (348)
T PRK06147 314 SRKGYGPGPNVLCHLSDDDGARAALVLEYR 343 (348)
T ss_pred HHcCcCCCCcEEEEecCCCCceEEEEEecc
Confidence 7778778899999998776 556676654
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.2 Score=46.03 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred eechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
.|..++.++..+.+|--...|.+... . .+ .....-...|++++|+++|++|+|||.+.+.-... .......
T Consensus 252 vl~see~A~~l~~~p~~~i~g~~~~~--~-~~-~~~~~~~~~a~~~al~~agl~~~did~~ei~d~F~-----~~~l~~~ 322 (387)
T PRK07850 252 LWMDEDRARALGLRPRARIVAQALVG--A-EP-YYHLDGPVQATAKVLEKAGMKIGDIDLVEINEAFA-----SVVLSWA 322 (387)
T ss_pred EEecHHHHHHcCCCCcEEEEEEEEec--c-Cc-hhhcchHHHHHHHHHHHcCCCHHHcCeeeecccch-----HHHHHHH
Confidence 44556677777765532223444211 1 11 12233457899999999999999999998843222 2233334
Q ss_pred HHhcccCCCCeeEEeeC---------CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEee--ccceeeeecC
Q 012909 102 QIFEKYGNTDIEGVDST---------NACYGGTAALFNCVNWVESASWDGRYGLVVCTD--TAAVAMLIGP 161 (453)
Q Consensus 102 ~~Lgl~G~~~~~~~dv~---------~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d--~~AvA~Ll~~ 161 (453)
+.||+ ... -+.+. .+|+ |+..+..+...|+.. ++++.|+..+- -.+.||||+.
T Consensus 323 e~lg~--~~~--pvN~~GG~la~Ghp~gat-G~~~v~e~~~qL~~~--~~~~g~~~~c~~gg~g~a~~~e~ 386 (387)
T PRK07850 323 QVHEP--DMD--KVNVNGGAIALGHPVGST-GARLITTALHELERT--DKSTALITMCAGGALSTGTIIER 386 (387)
T ss_pred HHcCC--CCC--CcCCCCchhhcCCCcchh-HHHHHHHHHHHHHhc--CCCeEEEEEccccCceeEEEEEe
Confidence 66775 111 22221 2333 444444455555443 34666655222 2278888764
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=1.1 Score=46.79 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=66.5
Q ss_pred eechhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++-++.+|..+ .++ .|.+... . .+.... .-...|++++|+++|++|+|||.+.+. |.........
T Consensus 263 vL~s~e~A~~~g~~~~a~I-~g~~~~~--~-~p~~~~-~~~~~A~~~al~~AGl~~~DID~iei~-----dafa~~~l~~ 332 (400)
T PRK13359 263 LLASEAAARRHGLKPRARV-LGIATAG--V-EPRVMG-IGPAPATQKLLARLGMTLDQFDVIELN-----EAFASQGLAV 332 (400)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEec--C-CCCccc-hhHHHHHHHHHHHhCCCHHHcCcCccC-----cHhHHHHHHH
Confidence 445556666666555 333 3555432 1 222222 233689999999999999999999832 2222334445
Q ss_pred HHHhcccCCCCeeEEeeCC---------cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 101 MQIFEKYGNTDIEGVDSTN---------ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G~~~~~~~dv~~---------aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.+.||+. .+...+.... +++|.. -+..+...|+.. ++++.|+..+--- +.||||++
T Consensus 333 ~e~lg~~--~~~~pvN~~GG~la~GHp~gasG~~-~v~e~~~qL~~~--~~~~g~~~~c~~gG~g~a~~ie~ 399 (400)
T PRK13359 333 LRELGLA--DDDARVNPNGGAIALGHPLGASGAR-LVTTALYQLERT--GGRFALCTMCIGVGQGIAIAIER 399 (400)
T ss_pred HHHcCCC--CCCCCEECCCchhhcCCchhHHHHH-HHHHHHHHHhhc--CCCeEEEEEcccCCceeEEEEEe
Confidence 6778862 2212223222 333333 333344444433 4567665533222 88888864
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.82 Score=47.59 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=45.3
Q ss_pred eechhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|..+ .++ .|.+.... .+..+.. -...|++++|+++|++|+|||.+.+. |.........
T Consensus 263 vl~s~e~A~~~g~~~~~~I-~g~~~~~~---~~~~~~~-~~~~a~~~al~~Agl~~~DID~~ei~-----D~f~~~~l~~ 332 (400)
T TIGR02430 263 LLASEEAVQRHGLTPRARI-LAAATAGV---EPRIMGI-GPVPATQKLLARAGLSIDQFDVIELN-----EAFAAQALAV 332 (400)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEecC---CCccccc-hHHHHHHHHHHHhCCCHHHCCCcccC-----cHHHHHHHHH
Confidence 445566666666543 344 35554321 2222222 23689999999999999999999842 2222334455
Q ss_pred HHHhcc
Q 012909 101 MQIFEK 106 (453)
Q Consensus 101 ~~~Lgl 106 (453)
.+.||+
T Consensus 333 ~e~lG~ 338 (400)
T TIGR02430 333 LRELGL 338 (400)
T ss_pred HHHcCC
Confidence 677887
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.5 Score=45.57 Aligned_cols=75 Identities=8% Similarity=0.043 Sum_probs=46.3
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|.+|- ++ .|.+.... .+..+. .-...|++++|+++|++|+|||.+.+.- .........
T Consensus 259 vl~s~~~a~~~g~~~~~~I-~g~~~~~~---~~~~~~-~~~~~a~~~al~~agi~~~did~~ei~d-----~f~~~~~~~ 328 (394)
T PRK09051 259 VLAEADAAEARGLKPLARL-VGYAHAGV---DPEYMG-IGPVPATQKALERAGLTVADLDVIEANE-----AFAAQACAV 328 (394)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEecc---CCCccc-ccHHHHHHHHHHHcCCCHHHcCEEEecC-----ccHHHHHHH
Confidence 3455566666676653 44 34444321 222222 2336899999999999999999998732 222344455
Q ss_pred HHHhcc
Q 012909 101 MQIFEK 106 (453)
Q Consensus 101 ~~~Lgl 106 (453)
.+.||+
T Consensus 329 ~e~lg~ 334 (394)
T PRK09051 329 TRELGL 334 (394)
T ss_pred HHHhCC
Confidence 678886
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.99 Score=47.17 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=69.2
Q ss_pred eechhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|..| .++ .|.+... . ++.. ...-...|++++|+++|++++|||.+.+.-. ........
T Consensus 282 VL~See~A~~lg~~p~a~I-~g~~~a~--~-~p~~-~~~~p~~Ai~~aL~~AGl~~~DID~~ei~ea-----Fa~~~l~~ 351 (417)
T PRK06025 282 LLASKAYAEKHGLKPRARI-VAMANMG--D-DPTL-MLNAPVPAAKKVLAKAGLTKDDIDLWEINEA-----FAVVAEKF 351 (417)
T ss_pred EEecHHHHHHcCCCCcEEE-EEEEEec--C-Cchh-hcccHHHHHHHHHHHcCCCHHHCcEEEEchH-----HHHHHHHH
Confidence 566677888888765 343 3444321 1 1111 0112257999999999999999999986422 22334456
Q ss_pred HHHhcccCCCCeeEEeeC---------CcChhHHHHHHHHHHHHHhCCCCCCeEEEE--EeeccceeeeecC
Q 012909 101 MQIFEKYGNTDIEGVDST---------NACYGGTAALFNCVNWVESASWDGRYGLVV--CTDTAAVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G~~~~~~~dv~---------~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv--~~d~~AvA~Ll~~ 161 (453)
.+.||+ ... -+.+. .|++|....+.....+.+.+ +++.|+. ++-=.++|+||++
T Consensus 352 ~~~lg~--~~~--~vN~~GG~ia~GHp~GaTGa~~v~~ll~qL~~~g---~~~Gl~~~c~~GG~g~A~lle~ 416 (417)
T PRK06025 352 IRDLDL--DRD--KVNVNGGAIALGHPIGATGSILIGTVLDELERRG---LKRGLVTMCAAGGMAPAIIIER 416 (417)
T ss_pred HHHcCC--Chh--hccccCCHHhcCCchhHHHHHHHHHHHHHHHHhC---CCeEEEEEEeeccceeEEEEEe
Confidence 677775 211 11221 25555555555556665544 2555443 2233388888864
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.3 Score=46.17 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=44.1
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|..|- ++ .|.+.... .+..... -...|++++|+++|++|+|||.+.+.- .........
T Consensus 264 vl~s~~~A~~lg~~p~a~I-~g~~~~~~---~~~~~~~-~~~~a~~~al~~Agl~~~DId~~ei~D-----~f~~~~l~~ 333 (401)
T PRK09050 264 LLASEAAAKKHGLTPRARI-LGMATAGV---EPRIMGI-GPAPATRKLLARLGLTIDQFDVIELNE-----AFAAQGLAV 333 (401)
T ss_pred EEecHHHHHHCCCCccEEE-EEEEEecc---CCccccc-hHHHHHHHHHHHcCCCHHHCCccccCc-----HhHHHHHHH
Confidence 3444555665665443 33 35544321 2222222 236799999999999999999998432 222333445
Q ss_pred HHHhcc
Q 012909 101 MQIFEK 106 (453)
Q Consensus 101 ~~~Lgl 106 (453)
.+.||+
T Consensus 334 ~e~lg~ 339 (401)
T PRK09050 334 LRQLGL 339 (401)
T ss_pred HHHcCC
Confidence 677887
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.2 Score=46.39 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=67.1
Q ss_pred eechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
.|..++.++.++.+|-.+..|.+.... .+.... .-...|++++|+++|++|+|||.+.+.-. .........
T Consensus 265 vl~se~~A~~~~~~p~~~i~g~~~~~~---~~~~~~-~~~~~a~~~al~~Agl~~~Did~~ei~d~-----f~~~~l~~~ 335 (404)
T PRK06205 265 LVTTEDKAEELGLRPLARLVSWAVAGV---EPSRMG-IGPVPATEKALARAGLTLDDIDLIELNEA-----FAAQVLAVL 335 (404)
T ss_pred EEecHHHHHHCCCCceEEEEEEEEecc---CCcccc-ccHHHHHHHHHHHcCCCHHHCCEeeeccH-----HHHHHHHHH
Confidence 455667777777666444346664421 111111 23368999999999999999999985332 222333445
Q ss_pred HHhcccCCCC-eeEEeeCC---------cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 102 QIFEKYGNTD-IEGVDSTN---------ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 102 ~~Lgl~G~~~-~~~~dv~~---------aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
+.||+. .. ..-+.+.. +|+| +.-+..+...|+.. .+++.|+-.+=-- +.|+||++
T Consensus 336 e~lg~~--~~~~~~vN~~GG~la~Ghp~gatG-~~~v~e~~~qL~~~--~~~~gl~~~c~~gg~g~a~~~e~ 402 (404)
T PRK06205 336 KEWGFG--ADDEERLNVNGSGISLGHPVGATG-GRILATLLRELQRR--QARYGLETMCIGGGQGLAAVFER 402 (404)
T ss_pred HHhCcC--cccCCCcCCCCCHHhhCCChhhhH-HHHHHHHHHHHHhc--CCCeEEEEEeccCChhhEEEEEe
Confidence 677762 10 00122222 2222 22333344444433 3467766533222 88888764
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.4 Score=45.48 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC-CCCeeEEee--CC-cChhHHHHHHHHHHHH
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDS--TN-ACYGGTAALFNCVNWV 135 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G-~~~~~~~dv--~~-aC~gg~~AL~~A~~~v 135 (453)
-...|++++++++|++|+|||.+.+.- ..........+.||+.+ +-++.+--+ ++ ..++|+..+..+...+
T Consensus 286 ~~~~a~~~a~~~Agi~~~did~~e~~d-----~f~~~~~~~~e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL 360 (386)
T cd00751 286 GPVPAIPKALKRAGLTLDDIDLIEINE-----AFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHEL 360 (386)
T ss_pred hHHHHHHHHHHHcCCCHHHcCEEEeec-----hhHHHHHHHHHHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHH
Confidence 346899999999999999999998642 12223334456777621 111111111 11 1122344444455555
Q ss_pred HhCCCCCCeEEEEEeecc--ceeeeec
Q 012909 136 ESASWDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
+.. .+++.|+..+--- +++|||+
T Consensus 361 ~g~--~~~~gl~~~~~~gg~g~~~~ie 385 (386)
T cd00751 361 KRR--GGRYGLATMCIGGGQGAAMVIE 385 (386)
T ss_pred Hhc--CCCEEEEEEcccccceEEEEEE
Confidence 543 4577777654443 7788875
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.66 Score=53.28 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEE---cccCCCC--Cc-cHHHH-----HHHHhcccCCCCeeEEe-----
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVG---SETVIDK--SK-SIKTF-----LMQIFEKYGNTDIEGVD----- 116 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~---t~s~~~~--~~-~~a~~-----l~~~Lgl~G~~~~~~~d----- 116 (453)
-+-|-.+|..+++-++||+|.++.. ++++ ++|.... .| ..-.+ +-..+. ++=..+||
T Consensus 87 q~RlLLE~t~EAivDaGiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfa---NRiSytFDfqGPS 163 (2376)
T KOG1202|consen 87 QLRLLLEATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFA---NRISYTFDFQGPS 163 (2376)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhh---cceeEEEeccCCc
Confidence 4789999999999999999988752 3322 2222111 11 11111 111111 12223444
Q ss_pred --eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 --STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 --v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+..+|++...||+.|.+-+++|+. ..+||-++...
T Consensus 164 ~s~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~li 200 (2376)
T KOG1202|consen 164 FSVDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLI 200 (2376)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceE
Confidence 456999999999999999999977 78888766643
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.8 Score=44.75 Aligned_cols=127 Identities=12% Similarity=0.121 Sum_probs=66.1
Q ss_pred eechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
.|..++.++.++.+|--+..|.+.... .++.. ..-...|++++++++|++|+|||.+.+..... .......
T Consensus 253 vl~s~~~A~~~~~~~~~~i~g~g~~~~---~~~~~-~~~~~~a~~~a~~~Agi~~~did~~e~~d~fa-----~~~~~~~ 323 (386)
T TIGR01930 253 LLMSEERAKELGLTPLARIVSFAVAGV---DPEIM-GLGPVPAIPKALKKAGLSISDIDLFEINEAFA-----AQVLACI 323 (386)
T ss_pred EEecHHHHHHCCCCccEEEEEEEEecC---CCccc-cccHHHHHHHHHHHcCCCHHHCCeeehcchhH-----HHHHHHH
Confidence 445566666666655322345555432 22212 22335899999999999999999996643221 2222334
Q ss_pred HHhcccCCC--CeeEEeeC--C-cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeec
Q 012909 102 QIFEKYGNT--DIEGVDST--N-ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 102 ~~Lgl~G~~--~~~~~dv~--~-aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
+.||+ |.. ++.+--+. + ..++|+..+..+...|+.. +.+++|+-+.-.- ++||||+
T Consensus 324 e~lG~-~~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~--~~~~gl~~~~~~gG~g~~~~~e 386 (386)
T TIGR01930 324 KELGL-DLEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR--GGRYGLATICIGGGQGIAVILE 386 (386)
T ss_pred HHhCC-ChhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc--CCCEEEEEEeccCCceEEEEeC
Confidence 66775 111 11111111 1 1222444444555555543 3477777544222 7777764
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.1 Score=44.09 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHh-----cccCCCC-ee-EEe-eC-CcChhHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF-----EKYGNTD-IE-GVD-ST-NACYGGTAALF 129 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~L-----gl~G~~~-~~-~~d-v~-~aC~gg~~AL~ 129 (453)
.....+.+++|+++|+.++|||.++...- .+..-..+.+.| |+ ++. +. .++ ++ .+|++...+|.
T Consensus 272 ~~~~~~i~~~L~~~gl~~~DId~~v~Hq~-----n~~~~~~v~~~l~~~~~gl--~~~k~~~~~~~~GNt~sAsipi~L~ 344 (378)
T PRK06816 272 VYTIKPLLELVDKRNLDPDDIDYFLPHYS-----SEYFREKIVELLAKAGFMI--PEEKWFTNLATVGNTGSASIYIMLD 344 (378)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEeeCcc-----cHHHHHHHHHHHHhccCCC--ChhheEEeccccccccchHHHHHHH
Confidence 44578889999999999999999986442 233444566666 66 322 22 222 22 35555556665
Q ss_pred HHHHHHHhCC-CCCCeEEEEEeecc
Q 012909 130 NCVNWVESAS-WDGRYGLVVCTDTA 153 (453)
Q Consensus 130 ~A~~~v~sg~-~~~~~aLVv~~d~~ 153 (453)
.+ ++.|. .+|+++++++.+-.
T Consensus 345 ~a---~~~g~~~~Gd~vl~~~~~s~ 366 (378)
T PRK06816 345 EL---LNSGRLKPGQKILCFVPESG 366 (378)
T ss_pred HH---HHcCCCCCCCEEEEEEeccc
Confidence 54 34443 27789998877765
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.7 Score=45.16 Aligned_cols=75 Identities=7% Similarity=0.076 Sum_probs=45.1
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|..+- ++ .|.+.... .+..... -...|++++|+++|++|+|||.+.+. |.........
T Consensus 264 vl~se~~a~~~g~~~~a~i-~g~~~~~~---~~~~~~~-~~~~A~~~al~~Agi~~~did~~ei~-----D~f~~~~l~~ 333 (399)
T PRK09052 264 ILVSEKALKQFNLTPLARF-VSFAVAGV---PPEIMGI-GPIEAIPAALKQAGLKQDDLDWIELN-----EAFAAQSLAV 333 (399)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEecc---CCCccch-hHHHHHHHHHHHcCCCHHHcCEEEeC-----cHHHHHHHHH
Confidence 3445566666665554 33 35554321 2222222 44789999999999999999999842 2222333445
Q ss_pred HHHhcc
Q 012909 101 MQIFEK 106 (453)
Q Consensus 101 ~~~Lgl 106 (453)
.+.||+
T Consensus 334 ~e~lg~ 339 (399)
T PRK09052 334 IRDLGL 339 (399)
T ss_pred HHHhCC
Confidence 577886
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.5 Score=43.77 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHHHhCC
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVESAS 139 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v~sg~ 139 (453)
..++.+++|+++|++++|||.+++..- .+..-..+.+.||+ +.......+. .|-.+...-+..-..+++.|.
T Consensus 227 ~~~~i~~~L~~~g~~~~did~~~~h~~-----~~~~~~~~~~~lg~--~~~~~~~~~~~~Gn~~sas~~~~L~~~~~~g~ 299 (325)
T PRK12879 227 MPKGARQVLEKAGLTKDDIDWVIPHQA-----NLRIIESLCEKLGI--PMEKTLVSVEYYGNTSAATIPLALDLALEQGK 299 (325)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CHHHhhhhHhhhCchHHHHHHHHHHHHHHcCC
Confidence 346788999999999999999998642 34455678899998 4322211222 221222222222334456553
Q ss_pred -CCCCeEEEEEeecc--ceeeee
Q 012909 140 -WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 140 -~~~~~aLVv~~d~~--AvA~Ll 159 (453)
.+|+++|+++.-.- ..|+|+
T Consensus 300 ~~~Gd~vll~~~G~G~~~~~~l~ 322 (325)
T PRK12879 300 IKPGDTLLLYGFGAGLTWAALLV 322 (325)
T ss_pred CCCCCEEEEEEEchhhhhEEEEE
Confidence 26789998876443 555555
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.1 Score=44.58 Aligned_cols=127 Identities=12% Similarity=0.062 Sum_probs=68.3
Q ss_pred eechhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.+|..| .++ .|.+... . .+... ..-...|++++|+++|++|+|||.+.+. +.........
T Consensus 267 vl~s~e~A~~~g~~p~a~I-~g~~~~~--~-~~~~~-~~~~~~a~~~al~~AGl~~~DID~~ei~-----daFa~~~l~~ 336 (402)
T PRK08242 267 LIGSEEAGKALGLKPRARI-VATATIG--S-DPTIM-LTGPVPATRKALAKAGLTVDDIDLFELN-----EAFASVVLRF 336 (402)
T ss_pred EEecHHHHHHcCCCCcEEE-EEEEEec--C-Cchhh-cccHHHHHHHHHHHcCCCHHHCCEEEec-----chhhHHHHHH
Confidence 556677888888754 444 3444331 1 11111 1112579999999999999999999863 2222334455
Q ss_pred HHHhcccCC-CCee----EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 101 MQIFEKYGN-TDIE----GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G~-~~~~----~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
.+.||+... -++. ++---.|++|....+..+..+-+ . ++++.|+..+-- .++||||++
T Consensus 337 ~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~-~--~~~~g~~~~c~ggG~g~a~~~e~ 401 (402)
T PRK08242 337 MQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELER-R--GKRTALITLCVGGGMGIATIIER 401 (402)
T ss_pred HHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHh-c--CCCeEEEEEcccCCceeEEEEEe
Confidence 678886210 0111 11111244444444444444433 2 346665543222 288888864
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.7 Score=43.52 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.++.++- ++ .|.+.... .+..... -...|++++++++|++|+|||.+.+.- .........
T Consensus 258 vl~s~e~a~~~~~~~~~~I-~g~~~~~~---~~~~~~~-~~~~a~~~a~~~Agi~~~did~~e~~d-----~f~~~~l~~ 327 (393)
T PRK05790 258 VVMSEAKAKELGLTPLARI-VSYAVAGV---DPAIMGI-GPVPAIRKALEKAGWSLADLDLIEINE-----AFAAQALAV 327 (393)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEccC---CCCccch-hHHHHHHHHHHHcCCCHHHCCEEEeCc-----HHHHHHHHH
Confidence 3445555555665554 33 45554421 2222222 245799999999999999999998532 122233345
Q ss_pred HHHhcccC-CCCeeEEee--C--CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 101 MQIFEKYG-NTDIEGVDS--T--NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G-~~~~~~~dv--~--~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.+.||+.. +-++.+--+ + .+++| ..-+..+...|+.. +++++|+-..--. ++|+||+.
T Consensus 328 ~e~lg~~~~pvN~~GG~l~~Ghp~gatG-~~~~~e~~~qL~~~--~~~~gl~~~~~~~g~g~~~~~e~ 392 (393)
T PRK05790 328 EKELGLDPEKVNVNGGAIALGHPIGASG-ARILVTLLHEMKRR--GAKKGLATLCIGGGQGVALIVER 392 (393)
T ss_pred HHHhCCChhhcCCCcchhhhCcchhhhH-HHHHHHHHHHHHhc--CCCeEEEEEeccCCceeEEEEEc
Confidence 56777510 111111111 1 23333 33333344445443 4577766543222 77888764
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.6 Score=36.41 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC---CCCeeEEeeC--CcChhHHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG---NTDIEGVDST--NACYGGTAALFNCVNWV 135 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G---~~~~~~~dv~--~aC~gg~~AL~~A~~~v 135 (453)
.+.|++++|+++|++++|||.+.+.-. .-...-...+.||+.. |++=-.+-.. .+|+|.-..+..+..+-
T Consensus 24 p~~A~~~al~~ag~~~~did~~Ei~Ea-----FA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L~ 98 (123)
T PF02803_consen 24 PVPAARKALERAGLTPDDIDVIEINEA-----FAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQLR 98 (123)
T ss_dssp HHHHHHHHHHHHT--GGGESEEEE--S-----BHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccchhhccch-----hhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHHH
Confidence 468999999999999999999987532 2234455667777610 0110011112 36766666666666655
Q ss_pred HhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 136 ESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
..+ +++.|+-.+--- +.|+||++
T Consensus 99 ~~~---~~~gla~~~~ggG~g~a~ller 123 (123)
T PF02803_consen 99 RRG---GRYGLAAICAGGGQGSAVLLER 123 (123)
T ss_dssp HHT---TSEEEEEEEETTTEEEEEEEEE
T ss_pred Hhc---hhhhhHHhcccceeeEEEEEEC
Confidence 443 366655443332 77888753
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.8 Score=44.85 Aligned_cols=127 Identities=12% Similarity=0.110 Sum_probs=66.2
Q ss_pred echhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 23 v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
+..++.++.+|..|--+..|.+.... .+..... -...|++++|+++|++|+|||.+.+.- ..........+
T Consensus 257 l~s~~~A~~~g~~~~~~i~g~~~~~~---~~~~~~~-~~~~a~~~al~~agl~~~did~~ei~d-----~f~~~~l~~~e 327 (391)
T PRK07661 257 LMDREKAESDGLKPLAKFRSFAVAGV---PPEVMGI-GPIAAIPKALKLAGLELSDIGLFELNE-----AFASQSIQVIR 327 (391)
T ss_pred EecHHHHHHCCCCceEEEEEEEEecC---CCcccch-HHHHHHHHHHHHcCCCHHHCCEEEeCC-----HHHHHHHHHHH
Confidence 44556666666655522345554432 1221222 346899999999999999999998532 12222333345
Q ss_pred HhcccC-CCCeeEEe--eC--CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEee--ccceeeeecC
Q 012909 103 IFEKYG-NTDIEGVD--ST--NACYGGTAALFNCVNWVESASWDGRYGLVVCTD--TAAVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G-~~~~~~~d--v~--~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d--~~AvA~Ll~~ 161 (453)
.||+.. +-+..+-- .+ .+++|.-..+..+.++-+. ++++.|+..+- -.+.|+||+.
T Consensus 328 ~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~~---~~~~g~~~~c~~gg~g~a~~~e~ 390 (391)
T PRK07661 328 ELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKRR---NEQFGIVTMCIGGGMGAAGVFEL 390 (391)
T ss_pred HcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHhc---CCCeEEEEEccccChhhEEEEEe
Confidence 777611 01111111 11 2555544445555554443 34666554322 2277888753
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.46 E-value=2 Score=44.47 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=72.5
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++..+.+|- ++ .|.++... .+ ++.....+.|++++++++|++|+|||.+.+.-. .......-
T Consensus 252 vl~See~A~~l~~~pv~~I-~g~~~~~~---~~-~~~~~~~~~A~~~al~~Agl~~~DiDv~Ei~da-----Fa~~~l~~ 321 (388)
T PRK06366 252 VMASEKAINEYGLKPIARI-TGYESASL---DP-LDFVEAPIPATRKLLEKQNKSIDYYDLVEHNEA-----FSIASIIV 321 (388)
T ss_pred EEecHHHHHHcCCCcCEEE-EEEEEEec---CH-HHhcccHHHHHHHHHHHcCCCHHHcceeeccch-----hHHHHHHH
Confidence 4566677777776665 54 35554431 11 223333478999999999999999999987432 22334455
Q ss_pred HHHhcccCC---C--CeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 101 MQIFEKYGN---T--DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G~---~--~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.+.||+.|. + ...++-.--||.|.-..+..+.++-..| +++.|+..+--- +.|+||+.
T Consensus 322 le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~~~---~~~g~~~~c~~gg~g~a~~~e~ 386 (388)
T PRK06366 322 RDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINALKTRH---MKTGLATLCHGGGGAHTLTLEM 386 (388)
T ss_pred HHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHHHhcC---CCeEEEEEecccChhhEEEEEe
Confidence 667776221 0 0111112237777666666666655433 466655433222 77777764
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=4.1 Score=41.84 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=66.7
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.++..|- ++. |.+... . .+... ..-...|++++|+++|++|+|||.+.+.- .........
T Consensus 225 vl~s~e~A~~lg~~p~~~i~-~~~~~~--~-~~~~~-~~~~~~a~~~al~~Agl~~~Did~~ei~e-----afa~~~~~~ 294 (361)
T PRK06690 225 LVMEEGQARKLGYKPVLRFV-RSAVVG--V-DPNLP-GTGPIFAVNKLLNEMNMKVEDIDYFEINE-----AFASKVVAC 294 (361)
T ss_pred EEecHHHHHHcCCCceEEEE-EEEEec--c-Ccccc-hhHHHHHHHHHHHHcCCCHHHcCEeeecc-----hhHHHHHHH
Confidence 3445566666665553 332 222211 1 11111 23457899999999999999999997732 222334455
Q ss_pred HHHhcccCCCCeeEE-------eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 101 MQIFEKYGNTDIEGV-------DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G~~~~~~~-------dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
.+.||+ ...-..+ --..|+.|.........++-+.| +++.|+..+=- .++|+||++
T Consensus 295 ~e~lgl--~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~~~---~~~g~~~~c~~gG~g~a~~~e~ 359 (361)
T PRK06690 295 AKELQI--PYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKRED---MKYGIATLGIGGGIGLALLFEK 359 (361)
T ss_pred HHhcCC--CchhcccCCcHHhccCchhhhHHHHHHHHHHHHHHhC---CCEEEEEEcccCcceeEEEEEe
Confidence 677776 2210011 11235665555555555554433 35655442211 278888764
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.75 E-value=2.3 Score=42.92 Aligned_cols=94 Identities=19% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-CeeEEeeCCcChhHHHHHHHHHHHHHhC
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIEGVDSTNACYGGTAALFNCVNWVESA 138 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~~~dv~~aC~gg~~AL~~A~~~v~sg 138 (453)
...++.+++|+++|++++|||.+++... .+.+-..+++.||+ +. ....++ ..|-.+...-+.+-..+++++
T Consensus 238 ~~~~~i~~~L~~~gl~~~did~~~~h~~-----~~~~~~~~~~~Lgl--~~~~~~~~~-~~Gn~~sas~~~~L~~~~~~~ 309 (339)
T PRK06840 238 NFLKVIREALRKSGYTPKDIDYLAILHM-----KRSAHIALLEGLGL--TEEQAIYLD-EYGHLGQLDQILSLHLALEQG 309 (339)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEECCc-----CHHHHHHHHHHcCC--CHHHeEeHH-hccchhhhhHHHHHHHHHHcC
Confidence 3457889999999999999999886432 23344567899998 43 222222 122222222233333445555
Q ss_pred C-CCCCeEEEEEeecc--ceeeeecC
Q 012909 139 S-WDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 139 ~-~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
. .+|+++|+++.-.- ..++|+.-
T Consensus 310 ~~~~Gd~ill~~~G~G~s~~~~~l~~ 335 (339)
T PRK06840 310 KLKDGDLVVLVSAGTGYTWAATVIRW 335 (339)
T ss_pred CCCCCCEEEEEEEehhhheeEEEEEe
Confidence 3 27889998876543 55666644
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.3 Score=42.96 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=64.5
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++-++.+|.++- ++ .|.+... . .+... ..-...|++++|+++|++|+|||.+.+.- .........
T Consensus 258 vl~s~~~A~~~g~~~~a~i-~g~~~~~--~-~~~~~-~~~~~~a~~~al~~agl~~~dId~~e~~d-----~f~~~~~~~ 327 (393)
T PRK05656 258 LLMSAAKAKALGLPVLAKI-AAYANAG--V-DPAIM-GIGPVSATRRCLDKAGWSLAELDLIEANE-----AFAAQSLAV 327 (393)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEec--C-CCccc-chhHHHHHHHHHHHcCCCHHHCCEEEecC-----ccHHHHHHH
Confidence 3444556666665533 33 3554432 1 22211 11235899999999999999999998732 222334445
Q ss_pred HHHhcccC-CCCeeEEee--C--CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecCC
Q 012909 101 MQIFEKYG-NTDIEGVDS--T--NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGPD 162 (453)
Q Consensus 101 ~~~Lgl~G-~~~~~~~dv--~--~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~~ 162 (453)
.+.||+.. +-++.+--+ + .+++|.-..+..+..+-.. ++++.|+-.+--- +.|+||+.+
T Consensus 328 ~e~lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~~---~~~~gl~~~c~~gG~g~a~~~e~~ 393 (393)
T PRK05656 328 GKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIRR---DAKKGLATLCIGGGQGVALAIERD 393 (393)
T ss_pred HHHhCCCCccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHHc---CCCEEEEEEcccCcceEEEEEecC
Confidence 67777511 011111111 1 1333333333333333222 3466665433222 888888754
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=87.38 E-value=7.6 Score=36.92 Aligned_cols=91 Identities=13% Similarity=-0.008 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhccc--CCC----CeeEEeeC-CcChhHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKY--GNT----DIEGVDST-NACYGGTAALF 129 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~--G~~----~~~~~dv~-~aC~gg~~AL~ 129 (453)
......++.+++|+++|++++|||.++.......... .+...+++. +.. ....-.++ ..|+++...|.
T Consensus 143 ~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~ 217 (254)
T cd00327 143 SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGD-----AVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILD 217 (254)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCcccc-----HHHHHHHHHHhCCCCCceeccccccccchHHHHHHHHH
Confidence 3456678899999999999999999886543322211 122333321 001 11112333 35556666666
Q ss_pred HHHHHHHhC-----CCCCCeEEEEEeec
Q 012909 130 NCVNWVESA-----SWDGRYGLVVCTDT 152 (453)
Q Consensus 130 ~A~~~v~sg-----~~~~~~aLVv~~d~ 152 (453)
.+...++.+ ..+++++|+.+.-.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 245 (254)
T cd00327 218 ELLLMLEHEFIPPTPREPRTVLLLGFGL 245 (254)
T ss_pred HHHHHHhCCCcCCCCCCcCEEEEeeEcC
Confidence 666555543 11357777776544
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.7 Score=44.28 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-eeE-E---eeC-CcChhHHHHHH
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IEG-V---DST-NACYGGTAALF 129 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-~~~-~---dv~-~aC~gg~~AL~ 129 (453)
.....+..+++++|+++|++++|||.+++...+. ..-..+.+.||+ ++. +.. + +++ .++++-..+|.
T Consensus 205 ~~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~~-----~~~~~~~~~lgl--~~ek~~~~~~~~~~GNt~sAsipl~L~ 277 (345)
T TIGR00748 205 AYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPNG-----KFYLVAARMLGF--PKEQVKPGLLTPRIGNTYSGATPVGLS 277 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCCh-----HHHHHHHHHcCC--CHHHeeccccccccCchhhhHHHHHHH
Confidence 4566777899999999999999999999754222 234457888897 322 221 1 343 36666667776
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc--ceeeee
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll 159 (453)
.+...++ +|+++|+++.=.- ..++++
T Consensus 278 ~~~~~~~----~Gd~vll~~~G~G~s~~~~~~ 305 (345)
T TIGR00748 278 AVLDIAE----PGDRILAVSYGSGAGSDAFSI 305 (345)
T ss_pred HHHHhcC----CCCEEEEEEecCCcceeEEEE
Confidence 6655332 6788888865443 445554
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.4 Score=42.44 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWV 135 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v 135 (453)
.....++.+++|+++|++++|||.+++... .+..-..+.+.||+ ++......+. ..|++...-+.+ ...+
T Consensus 226 ~~~~~~~~~~~L~~~gl~~~did~~~~h~~-----~~~~~~~~~~~l~l--~~~k~~~~l~~~Gn~~sas~~~~L-~~~~ 297 (326)
T PRK05963 226 VRMMSGASQNVLASAAMTPQDIDRFFPHQA-----NARIVDKVCETIGI--PRAKAASTLETYGNSSAATIPLSL-SLAN 297 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCCC-----CHHHHHHHHHHcCC--CHHHhhhhHHhhCcHHHHHHHHHH-HHHH
Confidence 445567788999999999999999987432 23455667889998 3332222222 223332222222 2334
Q ss_pred HhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 136 ESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 136 ~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
+.+. .+|+++|+++.-.- ..|+|+
T Consensus 298 ~~~~~~~Gd~vll~~~G~G~~~~~~ll 324 (326)
T PRK05963 298 LEQPLREGERLLFAAAGAGMTGGAVVM 324 (326)
T ss_pred HhCCCCCCCEEEEEEEehhhhheeeEE
Confidence 4442 36789998876443 444444
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=87.08 E-value=2.2 Score=42.79 Aligned_cols=84 Identities=7% Similarity=-0.019 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHHHhCC
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVESAS 139 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v~sg~ 139 (453)
...+.+++|+++|++++|||.+++...+ ...-..+++.||+ +.......+. .|-.+...-+.+-..++++|.
T Consensus 232 ~~~~i~~~L~~~gl~~~did~~~~H~~~-----~~~~~~i~~~l~l--~~e~~~~~~~~~Gn~~sas~~~~L~~~~~~g~ 304 (329)
T PRK07204 232 LMKFIDKLLMDAGYTLADIDLIVPHQAS-----GPAMRLIRKKLGV--DEERFVTIFEDHGNMIAASIPVALFEAIKQKK 304 (329)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEeCCCC-----HHHHHHHHHHcCC--CHHHhhhhHhhhCcHHHHHHHHHHHHHHHcCC
Confidence 4578889999999999999999875432 2345578899998 4332222222 222222222333334455553
Q ss_pred -CCCCeEEEEEee
Q 012909 140 -WDGRYGLVVCTD 151 (453)
Q Consensus 140 -~~~~~aLVv~~d 151 (453)
.+|+++|+++.-
T Consensus 305 ~~~Gd~vll~~~G 317 (329)
T PRK07204 305 VQRGNKILLLGTS 317 (329)
T ss_pred CCCCCEEEEEEEc
Confidence 367888888653
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=3 Score=43.31 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=63.6
Q ss_pred echhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 23 v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
|..++.++.++.+|-.+..|.+.. .. . ..+.......|++++|+++|++|+|||.+.+. |..........+
T Consensus 259 l~s~~~A~~~~~~p~~~i~g~~~~--~~-~-~~~~~~~~~~a~~~al~~agl~~~did~~e~~-----d~f~~~~l~~~e 329 (393)
T PRK08235 259 LMSEDRAKQEGRKPLATILAHTAI--AV-E-AKDFPRTPGYAINALLEKTGKTVEDIDLFEIN-----EAFAAVALASTE 329 (393)
T ss_pred EecHHHHHHCCCCceEEEEEEEec--cc-C-hhhhcchHHHHHHHHHHHhCCCHHHCCeehhc-----chhHHHHHHHHH
Confidence 444555555555554222343321 11 1 11222344689999999999999999999752 222233445567
Q ss_pred HhcccC-CCCeeEEee----CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEe--eccceeeeecC
Q 012909 103 IFEKYG-NTDIEGVDS----TNACYGGTAALFNCVNWVESASWDGRYGLVVCT--DTAAVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G-~~~~~~~dv----~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~--d~~AvA~Ll~~ 161 (453)
.||+.. +-+..+--+ -.+|+|....+..+.++ +.. .+++.|+... -=.+.|+||++
T Consensus 330 ~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL-~~~--~~~~g~~~~c~~gG~g~a~~~e~ 392 (393)
T PRK08235 330 IAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHEL-KRR--GGGIGIAAICSGGGQGDAVLIEV 392 (393)
T ss_pred HhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHH-Hhc--CCCeEEEEEcccccceEEEEEEe
Confidence 788621 011111111 12444444444444443 322 3466555332 11278888764
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.1 Score=42.92 Aligned_cols=92 Identities=8% Similarity=0.020 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHHHhCC
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVESAS 139 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v~sg~ 139 (453)
...+.+++|+++|++++|||.+++... .+..-..+.+.||+ +++-....+. .|-.+...-+..-...++.|.
T Consensus 228 ~~~~i~~~L~~~g~~~~did~~~~hq~-----~~~~~~~~~~~lgl--~~~k~~~~l~~~Gn~~sasi~~~L~~~~~~g~ 300 (326)
T CHL00203 228 VPAVIIKCLNALNISIDEVDWFILHQA-----NKRILEAIANRLSV--PNSKMITNLEKYGNTSAASIPLALDEAIQNNK 300 (326)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHhCC--CHHHhhhHHHhhCcHHHHHHHHHHHHHHHhCC
Confidence 455688999999999999999987542 23445568899998 4332222332 222222222222233345543
Q ss_pred -CCCCeEEEEEeec--cceeeee
Q 012909 140 -WDGRYGLVVCTDT--AAVAMLI 159 (453)
Q Consensus 140 -~~~~~aLVv~~d~--~AvA~Ll 159 (453)
.+|+++|+++.-. ...|+|+
T Consensus 301 ~~~Gd~vll~~~G~G~s~~~~v~ 323 (326)
T CHL00203 301 IQPGQIIVLSGFGAGLTWGAIVL 323 (326)
T ss_pred CCCCCEEEEEEEchhhhheEEEE
Confidence 3788898887432 2444444
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=86.65 E-value=4.5 Score=43.42 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=75.6
Q ss_pred eechhHHhhhhCCCcCe--eeEcccceEEec-cCCCCCH--HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccH
Q 012909 22 CVLQEALEVHDGVSKGK--YTVGLGQDCMAF-CSEVEDV--ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSI 96 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k--~~~Gig~r~~av-~~~~ed~--~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~ 96 (453)
.|..++.++..++++.+ |..|.+...-.. .....+. ......|++++++++|++++|||.+.+-++.+. .
T Consensus 250 il~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~~elydcF~~-----~ 324 (498)
T PRK08257 250 LLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDIDAFDLYSCFPS-----A 324 (498)
T ss_pred EEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEeccCCHH-----H
Confidence 56667777777776443 234555432110 0111222 222346999999999999999999998765443 2
Q ss_pred HHHHHHHhcccCCCCeeEEeeCC-----c---ChhHHHHHHHHHHHHHhCCCCCCeEEEEEee-cc--ceeeeecCCC
Q 012909 97 KTFLMQIFEKYGNTDIEGVDSTN-----A---CYGGTAALFNCVNWVESASWDGRYGLVVCTD-TA--AVAMLIGPDA 163 (453)
Q Consensus 97 a~~l~~~Lgl~G~~~~~~~dv~~-----a---C~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d-~~--AvA~Ll~~~~ 163 (453)
.....+.||+.+.. -..+.+.. | .+.|+.++.-+...|+.. +++++||.+.- .. .+++|++..|
T Consensus 325 ~~~~~E~LGl~~~g-~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg~--~~~~gLv~~~GG~~~~~~~~vl~~~p 399 (498)
T PRK08257 325 VQVAARELGLDLDD-PRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRAN--PGRRGLVTANGGYLTKHSVGVYSTEP 399 (498)
T ss_pred HHHHHHHcCcCCCC-CCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhhc--CCCEEEEECCCChhhceEEEEEeCCC
Confidence 33445888883221 11223322 1 222455556566677655 45888887643 22 3455566665
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.7 Score=42.25 Aligned_cols=85 Identities=6% Similarity=-0.028 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee--CCcChhHHHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS--TNACYGGTAALFNCVNWVE 136 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv--~~aC~gg~~AL~~A~~~v~ 136 (453)
.....+.+++|+++|++++|||.+++.. ..+..-..+.+.||+ +..-....+ ...|++...-+.+ ..+++
T Consensus 239 ~~~~~~~~~~L~~~g~~~~did~~i~H~-----~~~~~~~~~~~~lgl--~~~k~~~~~~~~GN~~sas~~~~L-~~~~~ 310 (338)
T PRK09258 239 ELAVDTWEAFLAQLGWAVEQVDRVICHQ-----VGAAHTRAILKALGI--DPEKVFTTFPTLGNMGPASLPITL-AMAAE 310 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEecCC-----CCHHHHHHHHHHhCC--CHHHceehHhhhCCcHHhHHHHHH-HHHHH
Confidence 4555678899999999999999998755 233455678889998 432222222 2333333322222 23345
Q ss_pred hCC-CCCCeEEEEEee
Q 012909 137 SAS-WDGRYGLVVCTD 151 (453)
Q Consensus 137 sg~-~~~~~aLVv~~d 151 (453)
.|. .+|+++|+++..
T Consensus 311 ~g~~~~Gd~vll~~~G 326 (338)
T PRK09258 311 EGFLKPGDRVALLGIG 326 (338)
T ss_pred hCCCCCCCEEEEEEec
Confidence 543 267888888754
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.18 E-value=5.5 Score=41.81 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=38.3
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
.|..++.++.++.+|- ++ .|.+... ..+..+...-...|++++|+++|++++|||.+.+...
T Consensus 275 vl~see~A~~l~~~p~~~i-~g~~~~~---~~~~~~~~~~~~~a~~~al~~AGl~~~DiD~~Ei~d~ 337 (428)
T PRK08963 275 LLMSESRAKALGLTPLGYL-RSYAFAA---IDVWQDMLLGPAYATPLALERAGLTLADLTLIDMHEA 337 (428)
T ss_pred EEecHHHHHHcCCCccEEE-EEEeccc---CCchhhhhhHHHHHHHHHHHHcCCCHHHCCEEEEccc
Confidence 3445555655665554 33 3344322 1221223344567999999999999999999987654
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=85.57 E-value=6.5 Score=39.08 Aligned_cols=78 Identities=10% Similarity=-0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEE----eeC-CcChhHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV----DST-NACYGGTAALFNCV 132 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~----dv~-~aC~gg~~AL~~A~ 132 (453)
......+++++|+++|++++|||.++..........+-....+...++. ...... .++ .+++++...|..+.
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~~G~~~aas~~~~l~~~~ 280 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGD---KSPAVSATKAMTGNLSSAAVVLAVDEAV 280 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCC---CCceeECCCcccccchhHhHHHHHHHHH
Confidence 3455689999999999999999999976544332222222222233331 112222 233 35666777777777
Q ss_pred HHHHhC
Q 012909 133 NWVESA 138 (453)
Q Consensus 133 ~~v~sg 138 (453)
..++.+
T Consensus 281 ~~~~~~ 286 (332)
T cd00825 281 LMLEHG 286 (332)
T ss_pred HHHhcC
Confidence 666655
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=84.82 E-value=4.8 Score=42.63 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC-CCCeeE----EeeCCcChhHHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEG----VDSTNACYGGTAALFNCVNWV 135 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G-~~~~~~----~dv~~aC~gg~~AL~~A~~~v 135 (453)
...|++++|+++|++|+|||.+.+. +..........+.||+.. +-+..+ +---.+++|....+..+.++-
T Consensus 333 ~~~A~~~al~~Agl~~~DID~~Ei~-----daFa~~~l~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~ 407 (452)
T PLN02287 333 PAVAIPAAVKAAGLELDDIDLFEIN-----EAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMK 407 (452)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEec-----chHHHHHHHHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999754 212122233356777621 011111 111125555544444444444
Q ss_pred HhCCCCCCeEEEEE--eeccceeeeecCCCC
Q 012909 136 ESASWDGRYGLVVC--TDTAAVAMLIGPDAP 164 (453)
Q Consensus 136 ~sg~~~~~~aLVv~--~d~~AvA~Ll~~~~~ 164 (453)
+.+. ++++.|+.. +.-.++||||+.-+.
T Consensus 408 ~~~~-~~~~gl~~~c~ggG~g~a~~ie~~~~ 437 (452)
T PLN02287 408 RRGK-DCRFGVVSMCIGTGMGAAAVFERGDS 437 (452)
T ss_pred hcCC-CCCeeEEEEccccCceeEEEEEecCc
Confidence 4331 115555442 223399999988754
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=84.54 E-value=9.8 Score=39.38 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCC----CCee----EEeeCCcChhHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGN----TDIE----GVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~----~~~~----~~dv~~aC~gg~~AL~~A~ 132 (453)
...|++++++++|++|+|||.+.+.- ..........+.||+... -|.. ++---.|++|.-..+. +.
T Consensus 282 ~~~a~~~al~~AGi~p~DId~~Ei~d-----aFa~~~l~~~e~lg~~~~g~~~vN~~GG~la~GhP~GATG~r~v~~-l~ 355 (385)
T TIGR02445 282 PVPATQKALKRAGLSISDIDVFELNE-----AFAAQALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTT-LL 355 (385)
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEEcc-----ccHHHHHHHHHHcCCCCCCCCCcCCCCchhhcCCCccccHHHHHHH-HH
Confidence 46789999999999999999998732 222334444577776211 1111 1111125555333333 33
Q ss_pred HHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 133 NWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
+.+... ++++.|+...--. ++||||++
T Consensus 356 ~~l~~~--~~~~Gl~~~~~g~g~g~a~~~e~ 384 (385)
T TIGR02445 356 NLMEQK--DATFGLATMCIGLGQGIATVFER 384 (385)
T ss_pred HHHHhc--CCCeEEEEEecccChhheEEEEe
Confidence 545432 3466665433222 77888763
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=9.2 Score=39.68 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcc
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEK 106 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl 106 (453)
......|++++++++|++|+|||.+.+..... ...-...+.||+
T Consensus 287 ~~~~~~a~~~a~~~agl~~~Did~~Ei~d~Fa-----~~~l~~~e~lG~ 330 (390)
T PRK06504 287 LEAPLPATERALKKAGMKIDDIDLYEVNEAFA-----SVPLAWLKATGA 330 (390)
T ss_pred hccHHHHHHHHHHHcCCCHHHCCEEEecccch-----HHHHHHHHHhCC
Confidence 34556799999999999999999998754322 333455678887
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.6 Score=37.12 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEE-EcccCCCCCccHHHHHHHHhcccC-CCCeeEEeeC-----CcChhHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEV-GSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDST-----NACYGGTAALFNCVN 133 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~-~t~s~~~~~~~~a~~l~~~Lgl~G-~~~~~~~dv~-----~aC~gg~~AL~~A~~ 133 (453)
-..+.+++|+++|++|++||.|.. ++.++. ..+.-..-+.+.++-.. ...++...++ ...++|+..|..+.-
T Consensus 27 ~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~-~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~~~l 105 (119)
T PF02801_consen 27 LARAIRRALADAGISPEDIDYIEAHGTGTPL-GDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAKALL 105 (119)
T ss_dssp HHHHHHHHHHHHTS-GGGEEEEE----SSHH-HHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccceeeeeecccccc-chhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHHHHH
Confidence 367899999999999999999985 343332 12344456667776411 1235555443 366777778888887
Q ss_pred HHHhCC
Q 012909 134 WVESAS 139 (453)
Q Consensus 134 ~v~sg~ 139 (453)
.++.+.
T Consensus 106 ~l~~~~ 111 (119)
T PF02801_consen 106 ALEHGT 111 (119)
T ss_dssp HHHHTE
T ss_pred HHhcCC
Confidence 777663
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=83.09 E-value=6.2 Score=40.95 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC-CCCeeEEee--C--CcChhHHHHHHHHHHH
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG-NTDIEGVDS--T--NACYGGTAALFNCVNW 134 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G-~~~~~~~dv--~--~aC~gg~~AL~~A~~~ 134 (453)
....+++++++++|++|+|||.+.+.-. .........+.||+.. +-+..+--+ + .+++|....+..+.+
T Consensus 292 ~~~~a~~~al~~Agi~~~Did~~Ei~d~-----f~~~~l~~~e~lg~~~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~- 365 (394)
T PLN02644 292 APALAIPKALKHAGLEASQVDYYEINEA-----FSVVALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGV- 365 (394)
T ss_pred hHHHHHHHHHHHcCCCHHHCCEEEeCcH-----HHHHHHHHHHHhCCCccccCCCCChHhhCCCHHHHHHHHHHHHHHH-
Confidence 3356999999999999999999987322 2233344456777621 111111111 1 233333333333333
Q ss_pred HHhCCCCCCeEEEEE--eeccceeeeecC
Q 012909 135 VESASWDGRYGLVVC--TDTAAVAMLIGP 161 (453)
Q Consensus 135 v~sg~~~~~~aLVv~--~d~~AvA~Ll~~ 161 (453)
|+.. ++++.|+.. +--.+.||||+.
T Consensus 366 l~~~--~~~~g~~~~~~~gg~g~a~~~e~ 392 (394)
T PLN02644 366 LRSK--NGKYGVAGICNGGGGASAIVVEL 392 (394)
T ss_pred HHhc--CCCeEEEEEeccCCceeEEEEEe
Confidence 3322 346666622 222288888864
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=11 Score=39.20 Aligned_cols=124 Identities=10% Similarity=0.062 Sum_probs=67.7
Q ss_pred echhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 23 VLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 23 v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
|..++.++.++.++- ++ .|.+.... .+.... .-...|++++|+++|++|+|||.+.+.-. .........
T Consensus 260 l~s~~~A~~~~~~~~a~i-~g~~~~~~---~~~~~~-~~~~~a~~~al~~Agl~~~dId~~e~~d~-----f~~~~l~~~ 329 (394)
T PRK06445 260 LMSKKAVKKYGLKPMAKI-RSFGFAGV---PPAIMG-KGPVPASKKALEKAGLSVKDIDLWEINEA-----FAVVVLYAI 329 (394)
T ss_pred EecHHHHHHCCCCceEEE-EEEEEecc---CCchhc-chHHHHHHHHHHHcCCCHHHcCEEEeccc-----chHHHHHHH
Confidence 444555555555553 33 35554321 111111 12367999999999999999999987542 223344556
Q ss_pred HHhcccCCCC-------eeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 102 QIFEKYGNTD-------IEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 102 ~~Lgl~G~~~-------~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
+.||+ .+. ..++---.+|+|...-+..+.++-..+ +++.|+...--. +.||||+.
T Consensus 330 e~lg~--~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~~---~~~gl~~~~~~gg~g~a~~~e~ 393 (394)
T PRK06445 330 KELGL--DPETVNIKGGAIAIGHPLGATGARIVGTLARQLQIKG---KDYGVATLCVGGGQGGAVVLER 393 (394)
T ss_pred HHhCC--CccccCCCCCHHHcCCCccchHHHHHHHHHHHHHhcC---CCEEEEEEcccCChhhEEEEEc
Confidence 77776 211 111111236666655566665554322 366665543222 88888764
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=82.94 E-value=5.4 Score=41.08 Aligned_cols=80 Identities=18% Similarity=0.039 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCC----cChhHHHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN----ACYGGTAALFNCVNWVE 136 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~----aC~gg~~AL~~A~~~v~ 136 (453)
...+++++|+++|++++|||.+++... .+.+-..+++.||+ +.+.....+.. ++++-..+|. .+++
T Consensus 282 ~~~~i~~~L~~~gl~~~dId~~v~Hq~-----n~~~~~~~~~~Lgl--~~ek~~~~l~~~GNt~sAsi~~~L~---~~~~ 351 (379)
T PLN02326 282 VPQVIESALQKAGLTAESIDWLLLHQA-----NQRIIDAVAQRLGI--PPEKVISNLANYGNTSAASIPLALD---EAVR 351 (379)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CHHHeeecHhhcCcHHHHHHHHHHH---HHHH
Confidence 445778899999999999999987542 33344568899998 43322233322 2233333333 3345
Q ss_pred hCC-CCCCeEEEEEe
Q 012909 137 SAS-WDGRYGLVVCT 150 (453)
Q Consensus 137 sg~-~~~~~aLVv~~ 150 (453)
.+. .+|+++|+++.
T Consensus 352 ~g~~~~Gd~vll~~~ 366 (379)
T PLN02326 352 SGKVKKGDVIATAGF 366 (379)
T ss_pred cCCCCCCCEEEEEEE
Confidence 543 26788888865
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=82.66 E-value=5 Score=39.95 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWVE 136 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v~ 136 (453)
....++.+++|+++|++++|||.+++... .+..-..+.+.||+ +..-....+. ..|.+...-+.+ ..+++
T Consensus 219 ~~~~~~~~~~l~~~g~~~~di~~~~~h~~-----~~~~~~~~~~~lgi--~~~k~~~~~~~~Gn~~sas~~~~L-~~~~~ 290 (318)
T TIGR00747 219 RKMGDVVEETLEANGLDPEDIDWFVPHQA-----NLRIIEALAKRLEL--DMSQVVKTVHKYGNTSAASIPLAL-DELLR 290 (318)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHcCC--CHHHeeehHhhhCCHHHHHHHHHH-HHHHH
Confidence 34567788999999999999999997442 34456678899998 3322112232 233333222222 23444
Q ss_pred hCC-CCCCeEEEEEee
Q 012909 137 SAS-WDGRYGLVVCTD 151 (453)
Q Consensus 137 sg~-~~~~~aLVv~~d 151 (453)
+|. .+|+++|+++.-
T Consensus 291 ~~~~~~Gd~vll~~~G 306 (318)
T TIGR00747 291 TGRIKPGDLLLLVAFG 306 (318)
T ss_pred cCCCCCCCEEEEEEEe
Confidence 543 267899888753
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=82.65 E-value=4 Score=40.47 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWVE 136 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v~ 136 (453)
....++.+++|+++|++++|||.+++... .+..-..+.+.||+ +..-....+. ..|.+.. .+.+-..+++
T Consensus 223 ~~~~~~i~~~l~~~g~~~~di~~~~~h~~-----~~~~~~~~~~~lgl--~~~~~~~~~~~~Gn~~sas-~~~~L~~~~~ 294 (320)
T cd00830 223 RLMPESIEEALEKAGLTPDDIDWFVPHQA-----NLRIIEAVAKRLGL--PEEKVVVNLDRYGNTSAAS-IPLALDEAIE 294 (320)
T ss_pred HhhHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHhCC--CHHHhhhhHHhhCcHHHHH-HHHHHHHHHH
Confidence 44567889999999999999999987642 33445568889998 3322222222 2333322 2333334455
Q ss_pred hCC-CCCCeEEEEEe
Q 012909 137 SAS-WDGRYGLVVCT 150 (453)
Q Consensus 137 sg~-~~~~~aLVv~~ 150 (453)
.+. .+|+++|+++.
T Consensus 295 ~~~~~~G~~vll~~~ 309 (320)
T cd00830 295 EGKLKKGDLVLLLGF 309 (320)
T ss_pred cCCCCCCCEEEEEEE
Confidence 553 26789888875
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=4.9 Score=41.88 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=63.0
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHH
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFL 100 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l 100 (453)
.|..++.++.++..+- ++ .|.+.... .++..... ...|++++++++|++|+|||.+.+. |........-
T Consensus 270 vl~s~e~A~~~~~~~~a~I-~g~~~~~~---~~~~~~~~-~~~a~~~al~~Agi~~~did~~ei~-----d~f~~~~l~~ 339 (406)
T PRK07851 270 VIMSDTKARELGLTPLARI-VSTGVSGL---SPEIMGLG-PVEASKQALARAGMSIDDIDLVEIN-----EAFAAQVLPS 339 (406)
T ss_pred EEccHHHHHHcCCCccEEE-EEEEEccC---CCCccchh-HHHHHHHHHHHhCCCHHHCCeehhh-----hHHHHHHHHH
Confidence 3445555555565553 33 45554321 12212222 4689999999999999999999642 1111222233
Q ss_pred HHHhcccC-CCCeeEEee----CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 101 MQIFEKYG-NTDIEGVDS----TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 101 ~~~Lgl~G-~~~~~~~dv----~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
.+.||+.. +.+..+--+ -.+|+|....+....++ +.. ++++.|+..+=- .++||||++
T Consensus 340 le~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL-~~~--~~~~g~~~~~~~gg~g~a~~~e~ 404 (406)
T PRK07851 340 ARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNL-QTH--DKTFGLETMCVGGGQGMAMVLER 404 (406)
T ss_pred HHHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHH-Hhc--CCCeEEEEEccccChhhEEEEEe
Confidence 46777621 111111111 12444444444444443 333 456665543221 177888764
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=6.5 Score=40.82 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=36.4
Q ss_pred eechhHHhhhhCCCcC-eeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 22 CVLQEALEVHDGVSKG-KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~-k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
.|..++.++.+|..+- ++ .|.+... . ++.. .......|++++|+++|++|+|||.+.+.
T Consensus 257 vl~see~A~~~g~~p~a~I-~g~~~~~--~-~~~~-~~~~~~~a~~~Al~~AGl~p~DID~~ei~ 316 (392)
T PRK06633 257 MVVSEEALKKHNLTPLARI-VSYASAG--V-DPSI-MGTAPVPASQKALSKAGWSVNDLEVIEVN 316 (392)
T ss_pred EEecHHHHHHCCCCeeEEE-EEEEEec--C-Ccch-hchHHHHHHHHHHHHcCCCHHHcCeeehh
Confidence 3445566666665552 44 3444331 1 1111 11334789999999999999999999853
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=81.26 E-value=5.3 Score=39.73 Aligned_cols=91 Identities=14% Similarity=0.014 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHHHhC
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWVESA 138 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v~sg 138 (453)
..++.+++|+++|++++|||.++.... .+..-..+.+.||+ +..-....+. ..|.+ ..-+..-..+++.|
T Consensus 221 ~~~~i~~~l~~~g~~~~di~~~~~h~~-----~~~~~~~~~~~lg~--~~~~~~~~~~~~Gn~~~-a~~~~~L~~~~~~g 292 (319)
T PRK09352 221 LAKVAREALEAAGLTPEDIDWLVPHQA-----NLRIIDATAKKLGL--PMEKVVVTVDKYGNTSA-ASIPLALDEAVRDG 292 (319)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHhCC--CHHHhhhhHHhhCCHHH-HHHHHHHHHHHHcC
Confidence 456888899999999999999997542 33455678889998 3321111221 12322 23333334555555
Q ss_pred C-CCCCeEEEEEeecc--ceeeee
Q 012909 139 S-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 139 ~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
. .+|+++|+++.-.- ..|+|+
T Consensus 293 ~~~~Gd~vll~s~G~G~~~~~~ll 316 (319)
T PRK09352 293 RIKRGDLVLLEGFGGGLTWGAALV 316 (319)
T ss_pred CCCCCCEEEEEEEchhheeEEEEE
Confidence 3 36889998877543 555555
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=4.8 Score=42.28 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=39.1
Q ss_pred eechhHHhhhhCCCcCeee-EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 22 CVLQEALEVHDGVSKGKYT-VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k~~-~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
.|..++.++..+.+|-++. .+........ ....+.......|++++++++|++|+|||.+.+...
T Consensus 272 vl~s~~~A~~l~~~p~~~i~~~~~~~~~~~-~~~~~~~~~~~~a~~~a~~~AGl~~~Did~~Ei~d~ 337 (427)
T PRK09268 272 LLASEEWAAEHGLPVLAYLVDAETAAVDFV-HGKEGLLMAPAYAVPRLLARNGLTLQDFDFYEIHEA 337 (427)
T ss_pred EEecHHHHHHcCCCceEEEEEEEEEcCCcc-cccchhhccHHHHHHHHHHHcCCCHHHCCEEEeccc
Confidence 4566677776676664221 2211111000 111233345567999999999999999999998653
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=11 Score=38.36 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEE-EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEV-GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST 118 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~-~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~ 118 (453)
..-...|.+++|+++|++|+|||.|.. +|.|+. ..+.-..-|.+.||. ...++...++
T Consensus 205 ~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~-~D~~E~~Ai~~~fg~--~~~~~v~s~K 263 (342)
T PRK14691 205 GDGAYRAMKIALRQAGITPEQVQHLNAHATSTPV-GDLGEINAIKHLFGE--SNALAITSTK 263 (342)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcC-CCHHHHHHHHHHhCC--CCCceEECCc
Confidence 445678999999999999999999884 444443 234445667777774 2344444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 453 | ||||
| 2f82_A | 450 | Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo | 0.0 | ||
| 2fa3_A | 450 | Hmg-Coa Synthase From Brassica Juncea In Complex Wi | 0.0 | ||
| 2wya_A | 460 | Crystal Structure Of Human Mitochondrial 3-Hydroxy- | 1e-121 | ||
| 2p8u_A | 478 | Crystal Structure Of Human 3-Hydroxy-3-Methylglutar | 1e-117 | ||
| 1x9e_A | 383 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 3e-25 | ||
| 3v4x_A | 388 | The Biochemical And Structural Basis For Inhibition | 4e-25 | ||
| 2hdb_A | 383 | Hmg-coa Synthase From Enterococcus Faecalis. Mutati | 8e-25 | ||
| 1ysl_A | 402 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 6e-24 | ||
| 3v4n_A | 388 | The Biochemical And Structural Basis For Inhibition | 6e-24 | ||
| 1ysl_B | 384 | Crystal Structure Of Hmg-Coa Synthase From Enteroco | 7e-24 | ||
| 1xpk_C | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 2e-15 | ||
| 1xpk_D | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 3e-14 | ||
| 1xpl_B | 390 | Crystal Structure Of Staphylococcus Aureus Hmg-coa | 3e-14 | ||
| 1xpk_B | 388 | Crystal Structure Of Staphylococcus Aureus Hmg-Coa | 5e-14 | ||
| 1tvz_A | 388 | Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe | 6e-14 | ||
| 3leh_A | 425 | The Crystal Structure Of Smu.943c From Streptococcu | 6e-13 | ||
| 3sqz_A | 389 | Crystal Structure Of Hmg_coa Synthase Complexed Wit | 7e-12 |
| >pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450 | Back alignment and structure |
|
| >pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450 | Back alignment and structure |
|
| >pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460 | Back alignment and structure |
|
| >pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478 | Back alignment and structure |
|
| >pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis Length = 383 | Back alignment and structure |
|
| >pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation Alanine 110 To Glycine Length = 383 | Back alignment and structure |
|
| >pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis With Acetoacetyl-Coa Ligand Length = 402 | Back alignment and structure |
|
| >pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By Hymeglusin Length = 388 | Back alignment and structure |
|
| >pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388 | Back alignment and structure |
|
| >pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388 | Back alignment and structure |
|
| >pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus Mutans Ua159 Length = 425 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450 | Back alignment and structure |
|---|
Score = 474 bits (1221), Expect = e-166
Identities = 357/449 (79%), Positives = 388/449 (86%), Gaps = 16/449 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES SWDGRYGLV+CTD+A A+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+LS ESYQSRDLEK S
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVS 301
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQ+AK YD KVQP+TL+PKQVGNMYTASLYAAFASL+H KHS L GKRV+MFSYGSG T
Sbjct: 302 QQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGST 361
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L E PFSLSNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAK+FVTS
Sbjct: 362 ATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTS 421
Query: 413 KDSSL--LSPGTCYLTEVDSMFRRFYAKK 439
K+ L L+PGT YL EVDS++RRFY KK
Sbjct: 422 KEGILDLLAPGTYYLKEVDSLYRRFYGKK 450
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478 | Back alignment and structure |
|---|
Score = 450 bits (1158), Expect = e-156
Identities = 215/456 (47%), Positives = 290/456 (63%), Gaps = 22/456 (4%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +TVV
Sbjct: 22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVV 81
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
+L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGT
Sbjct: 82 QNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGT 141
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
AA+FN VNW+ES+SWDGRY LVV D A AVA+LIGP+AP+ FE L
Sbjct: 142 AAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGL 201
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK-----LEGRQF 226
RG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + F
Sbjct: 202 RGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDF 261
Query: 227 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286
++ D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y R
Sbjct: 262 TLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDR 321
Query: 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRVIMF 345
D+EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L L GKR+ +F
Sbjct: 322 DVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 381
Query: 346 SYGSGLTATMFSLQLQEGHRPFSLSN--IVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHR 403
SYGSGL AT++SL++ + P S + + D+ +L R P+ F + MKL E
Sbjct: 382 SYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDT 441
Query: 404 YGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
+ +++ L GT YL VD RR YA++
Sbjct: 442 HHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 477
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396 | Back alignment and structure |
|---|
Score = 388 bits (997), Expect = e-133
Identities = 93/453 (20%), Positives = 173/453 (38%), Gaps = 75/453 (16%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+GI ++ Y P V L V K+ +G+GQ MA +D++SM
Sbjct: 2 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKD 61
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
++ D +IG + V +E+ +D +K+ + + + ACY T A
Sbjct: 62 IIT--DEDKKKIGMVIVATESAVDAAKAAAVQIHNLLG--IQPFARCFEMKEACYAATPA 117
Query: 128 LFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKLR 172
+ +++ + LV+ TDTA AVAM+I + I ++
Sbjct: 118 IQLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
++ YDF++P +YP+VDG LS+ Y+ + + + ++ +G+ + D
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKR----QGKSLA--DFA 228
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
FH P+ K+ +K+ + N
Sbjct: 229 SLCFHVPFTKMGKKALESIIDNAD------------------------------------ 252
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
+ ++ + + + VGN+YT SLY + SLL E G+ + +FSYGSG
Sbjct: 253 -ETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLL-ENRDLQAGETIGLFSYGSGSV 310
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
+S L EG + + L R E + + K R+ +F
Sbjct: 311 GEFYSATLVEG-----YKDHLDQAAHKALLNNRTEVSVDAYETFFK----RFDDVEFDEE 361
Query: 413 KDSSLLSPGTCYLTEVDSMFRRFYAKKENTSNA 445
+D+ YL+ +++ R ++ + +
Sbjct: 362 QDAVHEDRHIFYLSNIENNVREYHRPELEHHHH 394
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388 | Back alignment and structure |
|---|
Score = 354 bits (909), Expect = e-120
Identities = 100/446 (22%), Positives = 168/446 (37%), Gaps = 78/446 (17%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
+GI + + PP + AL V GK+ +G+GQD MA +D+++ +
Sbjct: 5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAA 64
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
++L K + I + VG+E+ ID+SK+ L ++ + A YG T
Sbjct: 65 EAILTKEDKEA--IDMVIVGTESSIDESKAAAVVLHRLMG--IQPFARSFEIKEAXYGAT 120
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESK 170
A L N V A + LVV D A AVAML+ + I +
Sbjct: 121 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKE 178
Query: 171 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230
YDF++P YP+VDG LS Y+ + + ++ G F+ D
Sbjct: 179 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT----GLDFA--D 231
Query: 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290
D FH PY K+ +K+ +
Sbjct: 232 YDALAFHIPYTKMGKKALLAKISDQT---------------------------------- 257
Query: 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350
+ ++ + + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 258 ---EAEQERILARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSG 314
Query: 351 LTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFV 410
A F+ +L G N ++ L R E ++ + +
Sbjct: 315 AVAEFFTGELVAG-----YQNHLQKETHLALLDNRTELSIAEYEAMFA--------ETLD 361
Query: 411 TSKDSSLLSPGTCYLTEVDSMFRRFY 436
T D +L ++ +++ R +
Sbjct: 362 TDIDQTLEDELKYSISAINNTVRSYR 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 71/478 (14%), Positives = 134/478 (28%), Gaps = 154/478 (32%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
K +ALD V +V + + + L C+ E V+ M +
Sbjct: 163 KTW--VALD-------VCLS-YKVQCKMDFKIFWLNLKN-----CNSPETVLEM----LQ 203
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNT-DIEGVDSTNACYG 123
LL Y+IDP R + S + + SI+ L ++ + Y N + + N
Sbjct: 204 KLL--YQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LL--NVQNA 256
Query: 124 GTAALFN--CVNWVESASWDGRYGLVVCTDTAAVAMLIGPDAPIAFESKLRGSHMSHAYD 181
FN C + +++ T V D
Sbjct: 257 KAWNAFNLSC-----------K--ILLTTRFKQVT------------------------D 279
Query: 182 FYKPNLASEYPVVDGKLS----QTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFH 237
F + + ++ + L+ KY + + L R+ +L
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLP-RE--VLTT------ 325
Query: 238 SPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAK 297
+P A +R D +A + + + L +
Sbjct: 326 NP---RRLSIIAES-----IR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 298 QLY-DLKV-QPSTLIPKQV-----GNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350
+++ L V PS IP + ++ + + + LH+ SL K+ +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKY--SLVEKQPKESTI--- 426
Query: 351 LTATMFSLQL---------QEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMK-LM 400
++ S+ L HR +IV ++P PP +
Sbjct: 427 ---SIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 401 EHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFY-------AKKENTSNAATCENG 451
H + E ++FR + K + S A
Sbjct: 479 HHLKNIE-----------------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 100.0 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 100.0 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 100.0 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 100.0 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 100.0 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 100.0 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 100.0 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 100.0 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 100.0 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 100.0 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 100.0 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 100.0 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 100.0 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 100.0 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 100.0 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 100.0 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 100.0 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 100.0 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 100.0 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 100.0 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 100.0 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 100.0 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 100.0 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 100.0 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 100.0 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 100.0 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 100.0 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 100.0 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 100.0 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 100.0 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 100.0 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 100.0 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 100.0 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 100.0 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.85 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.59 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.56 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.55 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 99.52 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 99.46 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.45 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 99.44 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 99.42 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 99.42 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.41 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.4 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 99.34 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 99.32 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.3 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 99.3 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 99.27 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 99.26 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 99.26 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 99.25 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 99.21 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.21 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 99.19 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 99.18 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 99.15 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.14 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 99.09 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.08 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.08 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.06 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 99.06 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 99.05 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.04 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 98.82 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 98.81 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.42 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 97.74 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.61 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 96.54 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 96.4 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 91.64 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 91.42 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 90.66 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 90.39 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 90.19 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 90.03 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 89.86 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 89.06 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 88.78 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 88.35 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 88.25 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 88.2 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 88.15 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 87.96 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 87.72 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 87.69 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 87.31 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 87.13 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 87.08 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 86.74 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 86.25 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 85.71 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 85.52 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 85.1 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 84.53 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 82.08 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 81.38 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 81.36 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 80.35 |
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-81 Score=657.20 Aligned_cols=435 Identities=50% Similarity=0.873 Sum_probs=395.8
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
|++|||.++++|+|+++|+++||+++.|++++||+.|+|+++++|++++|++++||++|+++||+++|++|++||+||++
T Consensus 3 ~~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a~i~~~~Id~ii~a 82 (460)
T 2wya_A 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVG 82 (460)
T ss_dssp CSSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------
Q 012909 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------ 153 (453)
Q Consensus 86 t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------ 153 (453)
|+|+++.+|+++++|+++||+.|++++.+||+++||+|+++||++|.+||++|.++++.++|+++|+.
T Consensus 83 T~t~~~~~ps~a~~v~~~l~~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~~~~~d~~~~~~~G 162 (460)
T 2wya_A 83 TETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGG 162 (460)
T ss_dssp CSCCSCSSSCHHHHHGGGTGGGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGGCE
T ss_pred eCCCCCCCCchHHHHHHHHhccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccccccccccccccCc
Confidence 99999999999999999999877889999999999999999999999999999876677888888876
Q ss_pred --ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhh-----hcCCC
Q 012909 154 --AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKL-----EGRQF 226 (453)
Q Consensus 154 --AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~-----~~~~~ 226 (453)
|+|||+++++++.+..+..+.++.+.+|||+|..++++|.+||+++..+|..+.+.+|+.+.+++... ++.++
T Consensus 163 dGA~A~l~~~~~~~~~~~~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~ 242 (460)
T 2wya_A 163 AGAVAMLIGPKAPLALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPF 242 (460)
T ss_dssp EEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred chHHhhhcccCCcceeecccccccccchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999988777777888999999999999988899999999999999999999999998776532 45678
Q ss_pred CccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCC
Q 012909 227 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQP 306 (453)
Q Consensus 227 ~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~ 306 (453)
+++|||+++|||||.||++++++++.++++...+.......++.+.+..+++.+++|.+++++|.+.+..++.|..++++
T Consensus 243 ~~~d~d~~v~Hqp~~r~~~k~~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~ 322 (460)
T 2wya_A 243 TLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKA 322 (460)
T ss_dssp CGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHSCHHHHHHHCGGGGGGTTCCGGGGGTCHHHHHHHHHHHHHHHHHHTGG
T ss_pred CHHHHhhhhhcccchHHHHHHHHHhcchhhhhcccchhhhhhhhhhhhcCCchhhhhhhhHHHHHHHHHHHHHhhcchhh
Confidence 99999999999999999999999999998876544433334455677789999999999999999999999999999999
Q ss_pred CcccccccCccccchHHHHHHHHHhhc-CcCCCCCEEEEEEecchhhheeeEEEEecCCCC-Cchhh-hhhcCChHHHhc
Q 012909 307 STLIPKQVGNMYTASLYAAFASLLHEK-HSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRP-FSLSN-IVKVMDVPGKLK 383 (453)
Q Consensus 307 s~~~~~~~GN~~taSl~l~L~sll~~~-~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~-~~~~~-~~~~~~~~~~L~ 383 (453)
++.+.+++|||||||+|++|++++++. +++++||||+|+|||||+++++|+++|+++..+ ...++ +.+.+++.++|+
T Consensus 323 ~~~~~~~~GNt~sASiplaL~~ll~~~~~~~~~GdrIll~~fGSGl~s~~fs~~v~~~~~~~~~~~~~~~~~~~~~~~L~ 402 (460)
T 2wya_A 323 SLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLA 402 (460)
T ss_dssp GGHHHHHHCCCGGGHHHHHHHHHHHHSCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCSTTSHHHHHHHTTTTHHHHHH
T ss_pred hhhHHHhhCCcchhhHHHHHHHHHHhccccCCCCCEEEEEEecCCccceEEEEEEeCCccccchHHHHHHHhhhHHHHHh
Confidence 999999999999999999999999862 345699999999999999999999999984221 11222 466789999999
Q ss_pred cCccCCHHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeeec
Q 012909 384 LRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440 (453)
Q Consensus 384 ~r~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 440 (453)
+|+++|++||++++++|++.|+..+|.|.++.+.++||+|||++|+++|||+|+++|
T Consensus 403 ~R~~~s~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~~l~~i~~~~~R~Y~~~~ 459 (460)
T 2wya_A 403 SRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 459 (460)
T ss_dssp TSEEECHHHHHHHHHHHHHHTTCCSBCCCSCGGGSCTTCEEEEEECTTSCEEEEECC
T ss_pred cCccCCHHHHHHHHHHHHHhccCCCCCCCCcccccCCCcEEeeecCCCceEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999987
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-79 Score=645.01 Aligned_cols=435 Identities=50% Similarity=0.849 Sum_probs=398.5
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|+|+|||.++++|+|+++|++++|+++.|++++||..|+|+++++++.++|++.+|+++|+++||+++|++|++||+||+
T Consensus 21 ~~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~agi~~~dId~li~ 100 (478)
T 2p8u_A 21 QSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEV 100 (478)
T ss_dssp HHHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred CCCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 46789999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++++..|+.+++|++.|++.|.++++++|+++||+||+.||++|.++|++|.||.++||||++|++
T Consensus 101 ~T~t~~~~~ps~a~~v~~~L~~lG~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia~~~~~~~~~~f 180 (478)
T 2p8u_A 101 GTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTG 180 (478)
T ss_dssp ECSCCSCSSSCHHHHHGGGTTTTTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEECCCSSTTGGGC
T ss_pred EccCCcccCccHHHHHHHHHhhcCCCCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeeecccCCCCCCcc
Confidence 999999999999999998888767788999999999999999999999999999755799999999986
Q ss_pred ---ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhh-----cCC
Q 012909 154 ---AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE-----GRQ 225 (453)
Q Consensus 154 ---AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~-----~~~ 225 (453)
|+||||++++++.++.+..++++.+.+|||+|.+++++|.|||+++..+|+.+++.+++.+.+++.+.. +++
T Consensus 181 GdGA~A~Ll~~~~~~~l~~~~~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~~~~~~g 260 (478)
T 2p8u_A 181 GVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKD 260 (478)
T ss_dssp EEEEEEEEEESSCSEEECTTCCEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cceeEEEEEecCCCceEeeccceecccchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 999999999876666656788999999999999888899999999999999999999999988875221 568
Q ss_pred CCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcC
Q 012909 226 FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQ 305 (453)
Q Consensus 226 ~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~ 305 (453)
++++|||+|+|||||.+|+++++++|.+++|...+....+..|+.+.+...++.+++|+||+++|+|...+++.|.+|++
T Consensus 261 ~~~~did~~v~H~~~~ki~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ek~~~~~~~~~~~~k~~ 340 (478)
T 2p8u_A 261 FTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTK 340 (478)
T ss_dssp CCGGGCSEEEECCSSHHHHHHHHHHHHHHHHHHCTTGGGSGGGTTCGGGTTCCGGGCTTCHHHHHHHHHHTHHHHHHHTT
T ss_pred CChHHcCEEEecCCcHHHHHHHHHHhCcccccccccccccccccccchhccCChhhcccchhHHHHHHHHhHHHHHHhHH
Confidence 89999999999999999999999999988887655444444566777778899999999999999999999999999999
Q ss_pred CCcccccccCccccchHHHHHHHHHhhcCc--CCCCCEEEEEEecchhhheeeEEEEecCCC-CCchhhhhhcC-ChHHH
Q 012909 306 PSTLIPKQVGNMYTASLYAAFASLLHEKHS--SLEGKRVIMFSYGSGLTATMFSLQLQEGHR-PFSLSNIVKVM-DVPGK 381 (453)
Q Consensus 306 ~s~~~~~~~GN~~taSl~l~L~sll~~~~~--~~~Gd~ill~syGsG~~~~~~~l~~~~~~~-~~~~~~~~~~~-~~~~~ 381 (453)
|++.+.+++|||||||+|++|++++++ ++ +++|++|+|+|||||++|++++++|+++.. .+.+++++++. ++.++
T Consensus 341 ~~~~~~~~~GN~~saSi~l~L~~ll~~-~~~~~~~Gdrill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (478)
T 2p8u_A 341 ASLLVSNQNGNMYTSSVYGSLASVLAQ-YSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSR 419 (478)
T ss_dssp GGGHHHHHHCCCGGGHHHHHHHHHHHH-SCHHHHTTCEEEEEEEETTTEEEEEEEEECSCCCTTSHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHh-CCccCCCCCEEEEEEEcchhhhEEEEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 66 679999999999999999999999998432 34599999888 99999
Q ss_pred hccCccCCHHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeeec
Q 012909 382 LKLRHEFPPEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440 (453)
Q Consensus 382 L~~r~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 440 (453)
|++|+.+|++||+++++.|++.|++++|+|.++.+.++||+|||++|+++|||+|++++
T Consensus 420 L~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~~ 478 (478)
T 2p8u_A 420 LDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 478 (478)
T ss_dssp HHTSEECCHHHHHHHHHHHHHHTTCCSBCCCSCSTTSCTTCEEEEEECTTSCEEEEECC
T ss_pred HhCCccCCHHHHHHHHHhhHhhcCCCCCCCCCCcccCCCceEEEeEEcCCCeEEEEeCC
Confidence 99999999999999999999999999999999988889999999999999999999864
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-77 Score=625.37 Aligned_cols=433 Identities=82% Similarity=1.290 Sum_probs=396.4
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
|++|||.++++|+|+++|++++|+++.|++++||++|+|+++++++.++|++.+|+++|++++|+++|++|++||.|+++
T Consensus 1 ~~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~agi~~~~Id~li~~ 80 (450)
T 2f82_A 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVG 80 (450)
T ss_dssp CCSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHcCcCHHHCCEEEEE
Confidence 57899999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------
Q 012909 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------ 153 (453)
Q Consensus 86 t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------ 153 (453)
|+++++..|+++.+|++.||++|+++++++++++||+||+.||.+|.++|++|.+|+++||||++|++
T Consensus 81 t~t~~~~~p~~a~~v~~~lgl~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~~~~~~~~~~fG 160 (450)
T 2f82_A 81 SETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGG 160 (450)
T ss_dssp CCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEECCSSSTTGGGCE
T ss_pred ecCCCCCCCcHHHHHHHHhCCcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeeccccCCCCCcccc
Confidence 99999989999999999999877788999999999999999999999999999766799999999984
Q ss_pred --ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCc
Q 012909 154 --AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231 (453)
Q Consensus 154 --AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~ 231 (453)
|+||||++++++.++.+..++++.+.+|||+|..++++|.++|+++..+|++++..+++.+++++.+..++|++++||
T Consensus 161 DGA~A~ll~~~~~~~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~~~di 240 (450)
T 2f82_A 161 AAAIAMLIGPDAPIVFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240 (450)
T ss_dssp EEEEEEEEESSCSEEEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGC
T ss_pred cceEEEEeccCCceEEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCChhhc
Confidence 999999998765455445677888889999998777899999999999999999999999988775323678999999
Q ss_pred cEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccc
Q 012909 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIP 311 (453)
Q Consensus 232 d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~ 311 (453)
|+|+|||||.+|+++++++|.++||...+....+..|.++.+...++.+++|+||+++|++.+.+++.|.+|+.||+.+.
T Consensus 241 d~~v~Hq~~~~i~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ek~~~~~~~~~~~~k~~~s~~~~ 320 (450)
T 2f82_A 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTYYDAKVQPTTLVP 320 (450)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHGGGTTCCHHHHHTCHHHHHHHHHHHHHHHHHHTGGGCHHH
T ss_pred CEEEecCChHHHHHHHHHHhcccccccccccccccccccccccccccccccccchhHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 99999999999999999999988887665544455566676677899999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHHHHhhcCc-CCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCH
Q 012909 312 KQVGNMYTASLYAAFASLLHEKHS-SLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 390 (453)
Q Consensus 312 ~~~GN~~taSl~l~L~sll~~~~~-~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 390 (453)
+++|||||||+|++|.+++++ +. +++|++|+|+|||||+++++++++|.++..+|.+++++.+.++.++|++|+.+|+
T Consensus 321 ~~~GN~~saSi~l~L~~~l~~-~~~~~~Gd~ill~s~GsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 399 (450)
T 2f82_A 321 KQVGNMYTASLYAAFASLVHN-KHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAP 399 (450)
T ss_dssp HHHCCCGGGHHHHHHHHHHHH-HGGGCTTCEEEEEEEETTTEEEEEEEEECCCCTTSSHHHHHHHHCHHHHHHTCEECCH
T ss_pred HhcCchHHHHHHHHHHHHHHh-CccCCCCCEEEEEeecCCcccEEEEEEEeCCCcchhHHHHHHhccHHHHHhCCccCCH
Confidence 999999999999999999998 54 6799999999999999999999999985445569999988899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCC--CCCcCCCcEEEEeeCCCcceEeeee
Q 012909 391 EKFVDIMKLMEHRYGAKDFVTSKD--SSLLSPGTCYLTEVDSMFRRFYAKK 439 (453)
Q Consensus 391 ~~y~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~l~~i~~~~~R~Y~~~ 439 (453)
++|+++++.|++.|++.+|.|.++ .+.++||+|||++|+++|||+|+++
T Consensus 400 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~r~Y~~~ 450 (450)
T 2f82_A 400 EKFVETMKLMEHRYGAKEFVTSKEGILDLLAPGTYYLKEVDSLYRRFYGKK 450 (450)
T ss_dssp HHHHHHHHHHHHHTTCCSEECCCTTTGGGSCTTCEEEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHhHhhcCCCCCCCCCccccccCCCccEEEeEEcCCCeEEEeeC
Confidence 999999999999999999999988 5667899999999999999999975
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=532.36 Aligned_cols=367 Identities=27% Similarity=0.423 Sum_probs=322.2
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
.|+|||.++++|+|+++|++++|++.+|++++||..|+|+++++++.++|++.+|+++|++++|++++ |++||+||++
T Consensus 5 ~m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a~--~~~Id~li~~ 82 (388)
T 3v4n_A 5 SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKED--KEAIDMVIVG 82 (388)
T ss_dssp SCCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHHH--HHHEEEEEEE
T ss_pred ceeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhCC--cccCCEEEEE
Confidence 47899999999999999999999999999999998899999999999999999999999999999987 9999999999
Q ss_pred cccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------
Q 012909 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------ 153 (453)
Q Consensus 86 t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------ 153 (453)
|+++++..|+.+.+|++.||+ +++++++|++++|+||+.||.+|..+|++| +.++||||++|++
T Consensus 83 t~t~~~~~ps~a~~v~~~LGl--~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg--~~~~vLVvg~e~~s~~~~~~~~~lf 158 (388)
T 3v4n_A 83 TESSIDESKAAAVVLHRLMGI--QPFARSFEIKEAXYGATAGLQLAKNHVALH--PDKKVLVVAADIAKYGLNSGGEPTQ 158 (388)
T ss_dssp CSSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESGGGHHHHHHHHHHHHHHHC--TTCEEEEEEEEEECCCTTCTTGGGC
T ss_pred eccCCCcCccHHHHHHHHcCC--CCCceEeehhhhhhHHHHHHHHHHHHHhcC--CCCEEEEEEehhhcccCCCCCCCcc
Confidence 999999999999999999998 556999999999999999999999999999 4599999999997
Q ss_pred ---ceeeeecCCCCc-eeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc
Q 012909 154 ---AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSML 229 (453)
Q Consensus 154 ---AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~ 229 (453)
|+||||++++++ .++.. ...++.+.+|||+|. +..++.++|+++..+|.+.+..+++.++++. |++++
T Consensus 159 GDGA~A~ll~~~~~il~~~~~-~~~~~~~~~df~~p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~------g~~~~ 230 (388)
T 3v4n_A 159 GAGAVAMLVSSEPRILALKED-NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVWDEHKKRT------GLDFA 230 (388)
T ss_dssp EEEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHH------CCCGG
T ss_pred ccceeEEEeecCCCceEEecc-ccccchhccccccCC-CCCCceeccHhHHHHHHHHHHHHHHHHHHHh------CCCHH
Confidence 999999998764 45443 455667889999998 4568999999999999999999999998876 48899
Q ss_pred CccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcc
Q 012909 230 DVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTL 309 (453)
Q Consensus 230 d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~ 309 (453)
|||+|+|||||+||++|++.+++... . +.+.+.++++. ++++.
T Consensus 231 did~~v~Hqp~~k~~~ka~~ril~~~-----~-------~~~~~~l~~~~-------------------------e~~~~ 273 (388)
T 3v4n_A 231 DYDALAFHIPYTKMGKKALLAKISDQ-----T-------EAEQERILARY-------------------------EESII 273 (388)
T ss_dssp GCSEEEECCSSHHHHHHHHHHHSTTS-----C-------HHHHHHHHHHH-------------------------HHHTT
T ss_pred HCCEEEeCCCcchHHHHHHHHHHhcc-----c-------HHHHHHhCCCH-------------------------HHHhh
Confidence 99999999999999999987775210 0 00111122222 23445
Q ss_pred cccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCC
Q 012909 310 IPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFP 389 (453)
Q Consensus 310 ~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~ 389 (453)
+.+++|||||||+|++|.+++++.+++++||+|+|+|||+|+++++|+++|++ +++++++..++.++|++|+.+|
T Consensus 274 ~~~~~GN~~sASi~l~L~~~l~~~g~~~~Gd~ill~s~GsG~~ae~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~~ 348 (388)
T 3v4n_A 274 YSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVA-----GYQNHLQKETHLALLDNRTELS 348 (388)
T ss_dssp TGGGTCCCGGGHHHHHHHHHHHHCSSCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGSCCHHHHHHHHHTCEECC
T ss_pred HHHhcCchHHHHHHHHHHHHHHhcCcCCCCCEEEEEEecCcceeEEEEEEEcc-----CHHHHHHhhhHHHHHhCCccCC
Confidence 67999999999999999999997346789999999999999999999999999 8998887779999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEee
Q 012909 390 PEKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYA 437 (453)
Q Consensus 390 ~~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~ 437 (453)
+++|+++++. ++.|.++.+.+.+|+|||++|++ |+|+|+
T Consensus 349 ~~~y~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~-~~r~y~ 387 (388)
T 3v4n_A 349 IAEYEAMFAE--------TLDTDIDQTLEDELKYSISAINN-TVRSYR 387 (388)
T ss_dssp HHHHHHHHHC--------CCCTTSCEECCCSSTTCEEEEET-TEEEEC
T ss_pred HHHHHHHHhc--------cCCCCCccccCCCCCEEEeeeeC-CEeecC
Confidence 9999999863 56788877777899999999999 699996
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-64 Score=516.49 Aligned_cols=372 Identities=24% Similarity=0.408 Sum_probs=327.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t 86 (453)
|+++|.++++|+|+++|+++++++..|.+++||..++|+++++++++++++.+|+++|++++|++ ++|++||.|+++|
T Consensus 1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~--~~~~~Id~li~~t 78 (396)
T 1xpm_A 1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITD--EDKKKIGMVIVAT 78 (396)
T ss_dssp -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCH--HHHHHEEEEEEEC
T ss_pred CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhc--CCHHHCCEEEEEe
Confidence 57999999999999999999999999999999987888888888889999999999999999988 7999999999999
Q ss_pred ccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------------
Q 012909 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------- 153 (453)
Q Consensus 87 ~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------- 153 (453)
+++++..|+.+.+|+..||+ +.++++++++++|+||+.||..|.++|++|. .++||||++|.+
T Consensus 79 ~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~--~~~vLvvg~e~s~~~~~~~~~~~~G 154 (396)
T 1xpm_A 79 ESAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQG 154 (396)
T ss_dssp SSCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCT--TCEEEEEEEEEECCCTTCSSGGGCE
T ss_pred CCCCCCCCCHHHHHHHHhCC--CCCceEEEeccccHHHHHHHHHHHHHHHcCC--CCEEEEEeehhhccccCCCCCcccc
Confidence 99999899999999999998 5579999999999999999999999999994 599999999975
Q ss_pred --ceeeeecCCCCc-eeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccC
Q 012909 154 --AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230 (453)
Q Consensus 154 --AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d 230 (453)
|+||||++++.+ .+..+ .+.++.+.++||+|... .++.++|+.+..+|.+.+..+++.++++. |++++|
T Consensus 155 dGA~A~vl~~~~~i~~~~~~-~g~~~~d~~~~~~p~~~-~~~~~~G~~~~~~~~~~~~~~~~~~L~~a------gl~~~d 226 (396)
T 1xpm_A 155 AGAVAMVIAHNPSILALNED-AVAYTEDVYDFWRPTGH-KYPLVDGALSKDAYIRSFQQSWNEYAKRQ------GKSLAD 226 (396)
T ss_dssp EEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBTTC-SSCEECHHHHHHHHHHHHHHHHHHHHHHH------TCCGGG
T ss_pred cceEEEEeccCCceEEEEec-cccccceEEEeeccCCC-CCeEEEcHHHHHHHHHHHHHHHHHHHHHc------CCCHHH
Confidence 999999988664 45544 67788888999999743 47889999999999999999999988876 488999
Q ss_pred ccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCccc
Q 012909 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 310 (453)
Q Consensus 231 ~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 310 (453)
||+|++|||+++++++++++++.+ ..+ +.++.+..+++||+.+
T Consensus 227 id~~~~H~~~~~~~~~~~~~l~~~-------------------~~~------------------~~~e~~~~~~~~s~~~ 269 (396)
T 1xpm_A 227 FASLCFHVPFTKMGKKALESIIDN-------------------ADE------------------TTQERLRSGYEDAVDY 269 (396)
T ss_dssp CSEEEECCSSHHHHHHHHHTTGGG-------------------SCH------------------HHHHHHHHHHHHHTTG
T ss_pred CCEEEecCCchHHHHHHHHHHHhh-------------------ccc------------------CCHHHHHHHhhhhhhh
Confidence 999999999999999988776521 011 1234455678899999
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCH
Q 012909 311 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPP 390 (453)
Q Consensus 311 ~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~ 390 (453)
++++|||||||+|++|.+++++ +++++||+|+|+|||+|+++++|+++|++ +++++++..++.++|++|+.+|+
T Consensus 270 ~~~~GN~~saSi~l~L~~~l~~-~~l~~Gd~ill~s~GsG~~~~~~~~~v~~-----~~~~~~~~~~~~~~l~~r~~~~~ 343 (396)
T 1xpm_A 270 NRYVGNIYTGSLYLSLISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSV 343 (396)
T ss_dssp GGGTCCCGGGHHHHHHHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCH
T ss_pred hhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEECcchhheEEEEEEcc-----cHHHHhhcccHHHHHhCCccCCH
Confidence 9999999999999999999998 78889999999999999999999999999 89998888889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccCCCCCCcCCCcEEEEeeCCCcceEeeee
Q 012909 391 EKFVDIMKLMEHRYGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439 (453)
Q Consensus 391 ~~y~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~ 439 (453)
++|+++++.|++.+. .|.++.+..+||+|||++|+++|||+|.++
T Consensus 344 ~~y~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~ 388 (396)
T 1xpm_A 344 DAYETFFKRFDDVEF----DEEQDAVHEDRHIFYLSNIENNVREYHRPE 388 (396)
T ss_dssp HHHHHHHHHHHTTCC----CTTTTTGGGGTTSCEEEEEETTEEEEECCT
T ss_pred HHHHHHHHhhhhccc----CCCCccccCCCCCEEEeEecccEEEEEEEe
Confidence 999999999987664 556666666899999999999666666554
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=385.97 Aligned_cols=296 Identities=19% Similarity=0.175 Sum_probs=231.3
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~ 81 (453)
-||...+|.++|.|+|+++|+|+||++..+.+++|+ ++||.+|+++ .++|++.+||++|+++||+++|++|+|||+
T Consensus 9 ~~~~~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~a--~~~e~~~~la~~Aa~~aL~~ag~~~~dId~ 86 (350)
T 4ewp_A 9 ERPAASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRA--TAEETVPVMAVGAAREALERAGLQGSDLDA 86 (350)
T ss_dssp CCCSEEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEECC--CSSCCHHHHHHHHHHHHHHHTTCCGGGCSE
T ss_pred cCCCCCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEEc--CCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 567789999999999999999999999999999998 4788888754 789999999999999999999999999999
Q ss_pred EEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------
Q 012909 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------- 153 (453)
Q Consensus 82 li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------- 153 (453)
||++|+|+++..|+.+++|+++||+ +++.+||+++||+|++.||.+|.+++++|. .++||||++|.+
T Consensus 87 li~~t~t~~~~~P~~a~~v~~~LGl---~~~~a~di~~~C~g~~~aL~~A~~~i~~g~--~~~~Lvv~~E~~s~~~d~~~ 161 (350)
T 4ewp_A 87 VIVSTVTFPHATPSAAALVAHEIGA---TPAPAYDVSAACAGYCYGVAQADALVRSGT--ARHVLVVGVERLSDVVDPTD 161 (350)
T ss_dssp EEEECSCCSCSSSCHHHHHHHHTTC---TTSCEEEEECGGGHHHHHHHHHHHHHHTTS--CSEEEEEEEEEGGGGCCTTC
T ss_pred EEEEeccCCCCCCchHHHHHHHhCC---CCceEEEeecchhhHHHHHHHhhhhhhCCC--ccceeEeeeeeceecccccc
Confidence 9999999999999999999999998 567799999999999999999999999995 499999999986
Q ss_pred ----------ceeeeecCCCC--c-eeccCceeeeccc------------cccccccCC-----------CCCCceecCc
Q 012909 154 ----------AVAMLIGPDAP--I-AFESKLRGSHMSH------------AYDFYKPNL-----------ASEYPVVDGK 197 (453)
Q Consensus 154 ----------AvA~Ll~~~~~--l-~~~~~~~~~~~~~------------~~df~~p~~-----------~~~~~~vdG~ 197 (453)
|+|+||++.+. + ....+..+..... ..++++... ...+..+||+
T Consensus 162 ~~~~~lfgDGA~A~vl~~~~~~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 241 (350)
T 4ewp_A 162 RSISFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGP 241 (350)
T ss_dssp TTTGGGBCEEEEEEEEEEESSCCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHH
T ss_pred cccccccccchheeeeecccCCCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhH
Confidence 88999976542 1 1100000000000 000110000 0113456776
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCC
Q 012909 198 LSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTL 277 (453)
Q Consensus 198 ~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l 277 (453)
.........+..+.+.++++ +|++++|||+|++||++.+++++ +++.+++
T Consensus 242 ~v~~~a~~~~~~~i~~~L~~------~gl~~~did~~v~Hq~~~~i~~~------------------------~~~~Lgl 291 (350)
T 4ewp_A 242 SVFRWAVWSMAKVAREALDA------AGVEPEDLAAFIPHQANMRIIDE------------------------FAKQLKL 291 (350)
T ss_dssp HHHHHHHHTHHHHHHHHHHH------HTCCGGGEEEEEECCSCHHHHHH------------------------HHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHh------hcCChhHhceEEecCCCHHHHHH------------------------HHHHcCc
Confidence 55332223333444444443 46999999999999999999877 3345677
Q ss_pred CccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeE
Q 012909 278 SDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFS 357 (453)
Q Consensus 278 ~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~ 357 (453)
|+++. .+ ...+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.+
T Consensus 292 ~~~~~----------------------~~--~~l~~~GNtssasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~v 346 (350)
T 4ewp_A 292 PESVV----------------------VA--RDIADAGNTSAASIPLAMHRLLEE-NPELSGGLALQIGFGAGLVYGAQV 346 (350)
T ss_dssp CTTSE----------------------EC--CTHHHHCBCGGGHHHHHHHHHHHH-CGGGTTSEEEEEEEETTTEEEEEE
T ss_pred ChHhE----------------------Ee--cccccccchHHHHHHHHHHHHHHh-CCCCCcCEEEEEEEchhhEeEEEE
Confidence 76531 11 112789999999999999999998 789999999999999999999999
Q ss_pred EEEe
Q 012909 358 LQLQ 361 (453)
Q Consensus 358 l~~~ 361 (453)
+||+
T Consensus 347 lr~P 350 (350)
T 4ewp_A 347 VRLP 350 (350)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9984
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=368.79 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=236.2
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVG 85 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~ 85 (453)
-||..|.+++.|+|+++|+++++++..+.+++||....|.+++.++.++|++.+|+++|++++|+++|++|++||.||++
T Consensus 7 ~~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~vi~~ 86 (323)
T 3il3_A 7 HMNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERRIAAEDETVATMGFEAAKNAIEAAQINPQDIELIIVA 86 (323)
T ss_dssp -CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEECCCTTCCHHHHHHHHHHHHHHHHCCCGGGCCEEEEE
T ss_pred cccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 57899999999999999999999999999999985444444444668899999999999999999999999999999999
Q ss_pred cccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------
Q 012909 86 SETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------ 153 (453)
Q Consensus 86 t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------ 153 (453)
|+++++..|+.+.+|+..||+ +++++++++++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 87 t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d~~~~ 161 (323)
T 3il3_A 87 TTSHSHAYPSAACQVQGLLNI---DDAISFDLAAACTGFVYALSVADQFIRAGKV--KKALVIGSDLNSRKLDETDRSTV 161 (323)
T ss_dssp CSCCSCSSSCHHHHHHHHTTC---SSCEEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGSCCTTCTTTT
T ss_pred eCCCCCCCccHHHHHHHHhCC---CCccEEEECCccHHHHHHHHHHHHHHHCCCC--CEEEEEEeeccccccCccccccc
Confidence 999988889999999999998 5799999999999999999999999999955 99999999997
Q ss_pred ------ceeeeecCCCCceeccCceeeeccc---cccc-cccC-----CCCCCceecCcchHHHHHHHHHHHHHHHHHHH
Q 012909 154 ------AVAMLIGPDAPIAFESKLRGSHMSH---AYDF-YKPN-----LASEYPVVDGKLSQTCYLMALDSCYKYFCQKF 218 (453)
Q Consensus 154 ------AvA~Ll~~~~~l~~~~~~~~~~~~~---~~df-~~p~-----~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~ 218 (453)
|+|+||++++. +++.++.+.. ..|. +.|. ....+..++|+.+...+.+.+..+++.+++
T Consensus 162 ~lfGDGA~A~vl~~~~~----~~i~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~-- 235 (323)
T 3il3_A 162 VLFGDGAGAVILEASEQ----EGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLL-- 235 (323)
T ss_dssp TTBCEEEEEEEEEEESS----CCEEEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cccccceEEEEEEEcCC----CCeEEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHH--
Confidence 89999987642 1122222111 1111 2231 122356788888766666666666665554
Q ss_pred hhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHH
Q 012909 219 EKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQ 298 (453)
Q Consensus 219 ~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~ 298 (453)
++|++++|||+|++||++.+++++. .+.++++.++.
T Consensus 236 ----~~gl~~~did~~v~Hq~~~~i~~~~------------------------~~~lgl~~ek~---------------- 271 (323)
T 3il3_A 236 ----ANNLDKKDLDWLVPHQANLRIITAT------------------------AKKLEMDMSQV---------------- 271 (323)
T ss_dssp ----TTTCCTTTCCEEEECCSCHHHHHHH------------------------HHHTTCCGGGB----------------
T ss_pred ----HcCCCHHHCCEEEEcCCCHHHHHHH------------------------HHHcCcCHHHh----------------
Confidence 4469999999999999999998773 34567887632
Q ss_pred HhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 299 LYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 299 ~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
.. ..+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.+++|
T Consensus 272 ------~~---~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~l~~ 323 (323)
T 3il3_A 272 ------VV---TLDKYANNSAATVPVALDEAIRD-GRIQRGQLLLLEAFGGGWTWGSALVRF 323 (323)
T ss_dssp ------CC---CHHHHCBCGGGHHHHHHHHHHHT-TSSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ------hc---cHhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 11 13799999999999999999998 789999999999999999999999986
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=366.79 Aligned_cols=295 Identities=16% Similarity=0.123 Sum_probs=232.8
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhhCCCc-Cee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSK-GKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~-~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~ 81 (453)
|.++++|.+++.|+|+++|+++++++..+.++ +|+ ++||.+|+ ++.+++++.+|+++|++++|+++|++|++||.
T Consensus 13 ~~~~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~--~a~~~~~~~~La~~Aa~~aL~~agi~~~~Id~ 90 (354)
T 4efi_A 13 RTQGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRR--WADAQTSAGDLCRKAGEKLLAGLGWQADSIDA 90 (354)
T ss_dssp EEESEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred EEcceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEE--EcCCCCCHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 34579999999999999999999999887644 677 35666665 45789999999999999999999999999999
Q ss_pred EEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------
Q 012909 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------- 153 (453)
Q Consensus 82 li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------- 153 (453)
|+++|+++++..|+.+.+|++.||+ +.+++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 91 vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d 166 (354)
T 4efi_A 91 LIFVSQTPNYRLPATAFVLQAELDL--PASCLALDINLGCSGYPQALWLGMNLIQTGAA--KRVLLAVGDTISKMIDPTD 166 (354)
T ss_dssp EEEECSSCSCSSSCHHHHHHHHTTC--CTTSEEEEECCCTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGCCTTC
T ss_pred EEEEeCCCCCCCCcHHHHHHHHcCc--CCCccEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCccc
Confidence 9999999988899999999999998 56899999999999999999999999999955 99999999987
Q ss_pred ----------ceeeeecCCCCc-eeccCceeeeccccccccccCCC----------------CCCceecCcchHHHHHHH
Q 012909 154 ----------AVAMLIGPDAPI-AFESKLRGSHMSHAYDFYKPNLA----------------SEYPVVDGKLSQTCYLMA 206 (453)
Q Consensus 154 ----------AvA~Ll~~~~~l-~~~~~~~~~~~~~~~df~~p~~~----------------~~~~~vdG~~s~~~y~~a 206 (453)
|+|+||++++.. .+.. ...+.......++.|..+ ..+..++|+.......+.
T Consensus 167 ~~~~~lfGDGA~A~vl~~~~~~~~~~~-~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 245 (354)
T 4efi_A 167 RSTSLLFGDAGTMTALETSNGDAAAHF-IIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNA 245 (354)
T ss_dssp HHHHTTBCCEEEEEEEEECCSCCEEEE-EEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHHH
T ss_pred cccccccccceeEEEEeecCCCCceEE-EEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHHH
Confidence 899999887531 1110 011111111112222211 113456776553333444
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccch
Q 012909 207 LDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286 (453)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~ 286 (453)
+..+++.++++. |++++|||+|++||++.+++++. .+.++++.++
T Consensus 246 ~~~~i~~~l~~~------gl~~~did~~v~Hq~~~~i~~~~------------------------~~~Lgl~~ek----- 290 (354)
T 4efi_A 246 VPKLVSRTLDIA------GRDKDSYDAFLFHQANLFMLKHL------------------------AKKAGLPAER----- 290 (354)
T ss_dssp HHHHHHHHHHHH------TCCGGGCSEEEECCCCHHHHHHH------------------------HHHTTCCGGG-----
T ss_pred HHHHHHHHHHHc------CCCHHHCCEEEeCCCCHHHHHHH------------------------HHHhCcCHHH-----
Confidence 455555555444 69999999999999999998773 3456788763
Q ss_pred hHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 287 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
+... .+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.+++|.+
T Consensus 291 -----------------~~~~---l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ll~~~~ 345 (354)
T 4efi_A 291 -----------------VPVN---IGEYGNTSCASIPLLITTELKD-RLKEETLQLGMFGFGVGYSWASAALAVGP 345 (354)
T ss_dssp -----------------SCCC---HHHHCBCGGGHHHHHHHHHSHH-HHHHSCEEEEEEEEETTTEEEEEEEEECC
T ss_pred -----------------HHHH---HhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhhhheeeEEEECC
Confidence 2221 2899999999999999999998 67789999999999999999999999987
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=357.73 Aligned_cols=288 Identities=17% Similarity=0.195 Sum_probs=235.1
Q ss_pred ceeEEeEEEEEcCCceechhHHhhh-----hCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCc
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVH-----DGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQI 79 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~-----~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~I 79 (453)
|+++|.+++.|+|+++++++++++. .+.+.+|+ ++||++|+. +.++++..+|+++|++++|+++|++|++|
T Consensus 10 m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~~--~~~~~~~~~la~~Aa~~al~~ag~~~~~I 87 (333)
T 4dfe_A 10 IYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYF--AEPDVTTSDLAFIASQRAIEAADIDPQSI 87 (333)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred cceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEEE--cCCCCCHHHHHHHHHHHHHHHcCCCHHHC
Confidence 6899999999999999999999998 55566777 457776664 47789999999999999999999999999
Q ss_pred CEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------
Q 012909 80 GRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------ 153 (453)
Q Consensus 80 d~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------ 153 (453)
|.|+++|+++++..|+.+.+|+..||+ +++++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 88 d~vi~~t~~~~~~~p~~a~~v~~~lgl--~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~ 163 (333)
T 4dfe_A 88 DLIIVATSTPDFVFPSTACLLQNKLGI--RNHGAAFDVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRILDF 163 (333)
T ss_dssp CEEEEECSSCSSSBSCHHHHHHHHTTC--CSCCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCT
T ss_pred CEEEEEeCCCCCCCCcHHHHHHHHhCC--CCCCcEEEeCcccHHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccccCc
Confidence 999999999988889999999999998 67899999999999999999999999999954 99999999986
Q ss_pred ------------ceeeeecCCCCceeccCceeeecc---ccccccc-cCC-------CCCCceecCcchHHHHHHHHHHH
Q 012909 154 ------------AVAMLIGPDAPIAFESKLRGSHMS---HAYDFYK-PNL-------ASEYPVVDGKLSQTCYLMALDSC 210 (453)
Q Consensus 154 ------------AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df~~-p~~-------~~~~~~vdG~~s~~~y~~al~~~ 210 (453)
|+|+||++.+. +++.++... ...|.++ |.. ...+..++|+.+...+.+.+..+
T Consensus 164 ~d~~~~~lfGDGA~A~vl~~~~~----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 239 (333)
T 4dfe_A 164 KDRTTCVLFGDGAGAVILQASDE----PGVLASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKV 239 (333)
T ss_dssp TCTTTTTTBCEEEEEEEEEEESS----CSEEEEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccEEEEEEEcCC----CCeEEEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHH
Confidence 89999987642 111111111 1123222 210 12256788888766666676666
Q ss_pred HHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHH
Q 012909 211 YKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290 (453)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k 290 (453)
++.++++ +|++++|||+|++||++.++++.. ++.++++.++
T Consensus 240 i~~~l~~------~gl~~~did~~~~Hq~~~~i~~~~------------------------~~~lgl~~~~--------- 280 (333)
T 4dfe_A 240 AVEALEK------ANLSAEQIDWLIPHQANIRIMQST------------------------CRKLGLPQER--------- 280 (333)
T ss_dssp HHHHHHH------TTCCGGGCSEEEECCSCHHHHHHH------------------------HHHTTCCGGG---------
T ss_pred HHHHHHH------cCCCHHHCCEEEEcCCCHHHHHHH------------------------HHHhCCCHHH---------
Confidence 6666554 369999999999999999998773 3446777763
Q ss_pred HHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
+.. ..+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.+++|
T Consensus 281 -------------~~~---~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~ll~~ 333 (333)
T 4dfe_A 281 -------------MIV---TVGEHGNTSAASIPLALDVAVRD-GRIKRGQNVLIEGVGGGFTWGASVIRY 333 (333)
T ss_dssp -------------BCC---CHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -------------hhh---hHHhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 222 23789999999999999999998 788999999999999999999999986
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=360.48 Aligned_cols=293 Identities=14% Similarity=0.164 Sum_probs=230.8
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhh-CCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcC
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHD-GVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIG 80 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~-g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id 80 (453)
++.++++|.+++.|+|+++|+++++++.. +.+.+|+ ++||.+|++ +.+++++.+|+++|++++|+++|++|++||
T Consensus 26 ~~~~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~--a~~~~~~~~La~~Aa~~aL~~ag~~~~~Id 103 (365)
T 3gwa_A 26 AHPPRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRI--AAPRETAADLAYEAARKLFAQGAVGADQVD 103 (365)
T ss_dssp ---CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEEE--CCTTCCHHHHHHHHHHHHHHTTSCCGGGCC
T ss_pred ceeccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEEE--CCCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 45678999999999999999999999998 6777887 467776665 478899999999999999999999999999
Q ss_pred EEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------
Q 012909 81 RLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------- 153 (453)
Q Consensus 81 ~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------- 153 (453)
.||++|+++++..|+.+.+|+..||+ +.++++++++++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 104 ~vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~ 179 (365)
T 3gwa_A 104 FVILCTQAPDYVLPTSACMLQHRLGI--PTHAGALDVNLGCSGYVYGLSLAKGLVETGAA--RCVLLLTADTYSKYLHPL 179 (365)
T ss_dssp EEEEEESSCSCSBSCHHHHHHHHTTC--CTTSEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTT
T ss_pred EEEEEeCCCCCCCCcHHHHHHHHcCC--CCCceEEEecccChHHHHHHHHHHHHHHcCCC--CEEEEEEEchhhccCCcc
Confidence 99999999988899999999999998 55899999999999999999999999999955 99999999987
Q ss_pred -----------ceeeeecCCCCceeccCceeeecccc---cc--------ccccCCC---------------CCCceecC
Q 012909 154 -----------AVAMLIGPDAPIAFESKLRGSHMSHA---YD--------FYKPNLA---------------SEYPVVDG 196 (453)
Q Consensus 154 -----------AvA~Ll~~~~~l~~~~~~~~~~~~~~---~d--------f~~p~~~---------------~~~~~vdG 196 (453)
|+|+||++++.- ..++..+..... ++ +..|... ..+..++|
T Consensus 180 dr~~~~lfGDGAaA~vl~~~~~~--~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g 257 (365)
T 3gwa_A 180 DKSVRTLFGDGASATAVIAEHGE--LERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNG 257 (365)
T ss_dssp CHHHHTTBCCEEEEEEEEEECSS--SCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECH
T ss_pred cccccccccceeEEEEEEecCCC--CCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEecc
Confidence 999999876421 001111111100 11 1112100 12455666
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCC
Q 012909 197 KLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST 276 (453)
Q Consensus 197 ~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 276 (453)
+.......+.+..+.+.++++. |++++|||+|++||++.+++++. ++.++
T Consensus 258 ~~v~~~~~~~~~~~i~~~L~~~------gl~~~did~~v~Hq~n~~i~~~~------------------------~~~Lg 307 (365)
T 3gwa_A 258 AEVMAFSLAEVPRAADRLLALA------GEPRENIDCFVLHQANRFMLDAL------------------------RKKMK 307 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------TCCGGGCSEEEECCCCHHHHHHH------------------------HHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc------CCCHHHCCEEEEcCCCHHHHHHH------------------------HHHhC
Confidence 6554333444555555555544 59999999999999999998773 34457
Q ss_pred CCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheee
Q 012909 277 LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMF 356 (453)
Q Consensus 277 l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~ 356 (453)
++.++ +.. ..+++|||++||+|++|.+++++ +++++||+|+|++||+|++|++.
T Consensus 308 l~~ek----------------------~~~---~l~~~GNtssAsipl~L~~~~~~-g~~~~Gd~vll~~fG~G~t~~~~ 361 (365)
T 3gwa_A 308 IPEHK----------------------FPV---LMEHCGNTVSSTLPLALETMRAN-GTLARGMRLMLLGFGVGYSWAGC 361 (365)
T ss_dssp CCGGG----------------------SCC---CCTTTCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEE
T ss_pred CCHHH----------------------HHH---HHhcccchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEE
Confidence 77763 222 23799999999999999999998 78999999999999999999999
Q ss_pred EEEE
Q 012909 357 SLQL 360 (453)
Q Consensus 357 ~l~~ 360 (453)
+++|
T Consensus 362 ll~~ 365 (365)
T 3gwa_A 362 LVNF 365 (365)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9986
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=355.72 Aligned_cols=293 Identities=18% Similarity=0.172 Sum_probs=230.6
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhh-------CCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCC
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHD-------GVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKI 74 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~-------g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi 74 (453)
.+.++++|.+++.|+|+++|+++|+++.. +.+++|+. +||.+|+ ++.+++++.+|+++|++++|+++|+
T Consensus 8 m~~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~--~~~~~~~~~~La~~Aa~~al~~ag~ 85 (345)
T 3s21_A 8 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARR--LWDQDVQASDAATQAARKALIDANI 85 (345)
T ss_dssp GSCSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEE--ECSSCCCHHHHHHHHHHHHHHHHTC
T ss_pred ceecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEE--ECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999998875 67888884 5666665 4578999999999999999999999
Q ss_pred CcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-
Q 012909 75 DPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA- 153 (453)
Q Consensus 75 ~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~- 153 (453)
+|++||.|+++|+++++..|+.+.+|++.||+ +.+++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 86 ~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lGl--~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s 161 (345)
T 3s21_A 86 GIEKIGLLINTSVSRDYLEPSTASIVSGNLGV--SDHCMTFDVANACLAFINGMDIAARMLERGEI--DYALVVDGETAN 161 (345)
T ss_dssp CGGGCCEEEECCSCCSCSSSCHHHHHHHHHTC--CTTCEEEECCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCH
T ss_pred CHHHCCEEEEEeCCCCCCCChHHHHHHHHhCC--CCCceEEeECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccc
Confidence 99999999999999988889999999999998 55799999999999999999999999999955 99999999963
Q ss_pred --------------------------------ceeeeecCCCCceeccCceeeecc---ccccccccCCCCCCceecCcc
Q 012909 154 --------------------------------AVAMLIGPDAPIAFESKLRGSHMS---HAYDFYKPNLASEYPVVDGKL 198 (453)
Q Consensus 154 --------------------------------AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df~~p~~~~~~~~vdG~~ 198 (453)
|+|+||++.+...-...+.++.+. +..+++++.. .+..+||+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~g~~ 239 (345)
T 3s21_A 162 LVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNL--DRMVTDTRL 239 (345)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECGGGTTC-------------CHH
T ss_pred hhhccccccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCcchhhhccccC--cceEEcHHH
Confidence 788888776420000112222222 2234455432 235688887
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCC
Q 012909 199 SQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLS 278 (453)
Q Consensus 199 s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~ 278 (453)
....+.+.+..+++.++++. |++++|||+|++||++.+++++.. +.++++
T Consensus 240 v~~~~~~~~~~~i~~~l~~~------gl~~~did~~v~Hq~~~~i~~~~~------------------------~~lgl~ 289 (345)
T 3s21_A 240 LLIEGIKLAQKTFVAAKQVL------GWAVEELDQFVIHQVSRPHTAAFV------------------------KSFGID 289 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------CCCGGGCSEEEECCSCHHHHHHHH------------------------HHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHc------CCCHHHCCEEEeCCCCHHHHHHHH------------------------HHcCcC
Confidence 76666666666666666554 599999999999999999987733 345777
Q ss_pred ccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEE
Q 012909 279 DVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSL 358 (453)
Q Consensus 279 ~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l 358 (453)
.++ +.. ..+++|||++||+|++|.+++++ +++++||+|+|++||+|++|+++++
T Consensus 290 ~ek----------------------~~~---~l~~~GNt~sasi~~~L~~~~~~-g~~~~Gd~vll~~~G~G~t~~~~~l 343 (345)
T 3s21_A 290 PAK----------------------VMT---IFGEHGNIGPASVPIVLSKLKEL-GRLKKGDRIALLGIGSGLNCSMAEV 343 (345)
T ss_dssp GGG----------------------BCC---CHHHHCBCGGGHHHHHHHHHHHH-TCCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HHH----------------------cee---eHhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEChhhhheEEEE
Confidence 763 111 22789999999999999999998 7899999999999999999999999
Q ss_pred EE
Q 012909 359 QL 360 (453)
Q Consensus 359 ~~ 360 (453)
+|
T Consensus 344 ~w 345 (345)
T 3s21_A 344 VW 345 (345)
T ss_dssp EC
T ss_pred EC
Confidence 87
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=353.47 Aligned_cols=290 Identities=16% Similarity=0.144 Sum_probs=232.3
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.+++.|+|+++++++++++..+.+++|+ ++||.+|++ +.++++..+|+++|++++|+++|++|++||.||+
T Consensus 24 ~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~~--a~~~~~~~~La~~Aa~~aL~~agl~~~dId~vi~ 101 (359)
T 3h78_A 24 GNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYH--VEPEQAVSALMVPAARQAIEAAGLLPEDIDLLLV 101 (359)
T ss_dssp CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEEE--CCTTCCTHHHHHHHHHHHHHHTTCCGGGCCEEEE
T ss_pred CCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEEE--cCCCCCHHHHHHHHHHHHHHhcCCCHHHCCEEEE
Confidence 579999999999999999999999999988888 356666654 5788999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++++..|+.+.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 102 ~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~--~~vLvvg~e~~S~~~~~~d~~~ 176 (359)
T 3h78_A 102 NTLSPDHHDPSQACLIQPLLGL---RHIPVLDIRAQASGLLYGLQMARGQILAGLA--RHVLVVCGEVLSKRMDCSDRGR 176 (359)
T ss_dssp ECSSCSSSBSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEECGGGCCCSTTTH
T ss_pred EeCCCCCCCCcHHHHHHHHcCC---CCCcEEEECCHhHHHHHHHHHHHHHHHCCCc--CEEEEEEEchhcccCCcccccc
Confidence 9999988889999999999998 5799999999999999999999999999955 99999999986
Q ss_pred ---------ceeeeecCCCC----c-eeccCceeeeccccccccc------cC-------CCCCCceecCcchHHHHHHH
Q 012909 154 ---------AVAMLIGPDAP----I-AFESKLRGSHMSHAYDFYK------PN-------LASEYPVVDGKLSQTCYLMA 206 (453)
Q Consensus 154 ---------AvA~Ll~~~~~----l-~~~~~~~~~~~~~~~df~~------p~-------~~~~~~~vdG~~s~~~y~~a 206 (453)
|+|+||++++. + .+.....+.+. +...+.. |. ....+..++|+.+...+.+.
T Consensus 177 ~t~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~ 255 (359)
T 3h78_A 177 NLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYF-DLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQT 255 (359)
T ss_dssp HHHTTBCEEEEEEEEECCSCSSSEEEEEEEEECGGGG-GGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHHH
T ss_pred cccceecceeEEEEEEecCCCCCceEEEEEEEccCcc-ceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHHH
Confidence 89999988752 1 11111111111 1111111 10 11224567888776666666
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccch
Q 012909 207 LDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286 (453)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~ 286 (453)
+..+++.++++. |++++|||+|++||+|.++++... +.++++.++
T Consensus 256 ~~~~i~~~L~~~------gl~~~did~~v~Hq~n~~i~~~~~------------------------~~lgl~~ek----- 300 (359)
T 3h78_A 256 LVRIAGEMLAAH------ELTLDDIDHVICHQPNLRILDAVQ------------------------EQLGIPQHK----- 300 (359)
T ss_dssp HHHHHHHHHHHT------TCCGGGCSEEEECCSCHHHHHHHH------------------------HHHTCCGGG-----
T ss_pred HHHHHHHHHHHc------CCCHHHCCEEEECCCCHHHHHHHH------------------------HHhCcCHHH-----
Confidence 666666666544 699999999999999999987743 344777763
Q ss_pred hHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 287 ~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
+..+ .+++|||++||+|++|.+++++ +++||+|+|++||+|++|++.+++|.+
T Consensus 301 -----------------~~~~---l~~~GNt~sAsi~l~L~~~~~~---l~~Gd~vll~~fG~G~t~~~~ll~~~~ 353 (359)
T 3h78_A 301 -----------------FAVT---VDRLGNMASASTPVTLAMFWPD---IQPGQRVLVLTYGSGATWGAALYRKPE 353 (359)
T ss_dssp -----------------BCCC---HHHHCBCGGGHHHHHHHHHGGG---SCTTCEEEEEEEETTTEEEEEEEECC-
T ss_pred -----------------hhhh---hhcccchHHHHHHHHHHHHHHh---CCCCCEEEEEEEchhhhheeeeEEehh
Confidence 2221 2799999999999999999986 689999999999999999999999976
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=343.78 Aligned_cols=281 Identities=20% Similarity=0.250 Sum_probs=222.6
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.+++.|+|+++|+++++++..+.+++|+. +||.+|++ +.++| +.+|+++|++++|+++|++|++||.|++
T Consensus 3 ~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~--a~~~e-~~~La~~Aa~~aL~~ag~~~~~Id~li~ 79 (321)
T 3il6_A 3 NYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRI--VTQEN-TSDLCHQVAKQLLEKSGKQASEIDFILV 79 (321)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEEC--CSSCC-HHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEEE--CCCCC-HHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 6899999999999999999999999999888884 57776664 46666 9999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++.+..|+.+.+|++.||+ ++++++++.++|+|++.||..|..+|++|.. ++||||++|.+
T Consensus 80 ~t~~~~~~~p~~a~~v~~~lGl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~dr~~ 154 (321)
T 3il6_A 80 ATVTPDFNMPSVACQVQGAIGA---TEAFAFDISAACSGFVYALSMAEKLVLSGRY--QTGLVIGGETFSKMLDWTDRST 154 (321)
T ss_dssp ECSSCSCSSSCHHHHHHHHTTC---TTCEEEEECCGGGHHHHHHHHHHHHHHTSSC--CCEEEEEEECGGGGSCTTCTTT
T ss_pred EeCCCCcCCCcHHHHHHHHcCC---CCceEEEeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEEccccccCCcccccc
Confidence 9999988899999999999998 4599999999999999999999999999955 99999999987
Q ss_pred -------ceeeeecCCCCceeccCceeeeccc---ccc-ccccCCC------------CCCceecCcchHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAPIAFESKLRGSHMSH---AYD-FYKPNLA------------SEYPVVDGKLSQTCYLMALDSC 210 (453)
Q Consensus 154 -------AvA~Ll~~~~~l~~~~~~~~~~~~~---~~d-f~~p~~~------------~~~~~vdG~~s~~~y~~al~~~ 210 (453)
|+|+||++++.- ++.++++.. ..+ .+.|..+ ..+..++|+.. |..+.+..
T Consensus 155 ~~lfGDGA~A~vl~~~~~~----~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~~~~~~ 227 (321)
T 3il6_A 155 AVLFGDGAAGVLIEAAETP----HFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI---FDFAIKDV 227 (321)
T ss_dssp GGGBCCEEEEEEEEEESSC----CEEEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHH---HHHHHHHH
T ss_pred ceeeccccEEEEEEEcCCC----CEEEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHH---HHHHHHHH
Confidence 899999876531 111121111 112 2222211 12345555443 44444433
Q ss_pred HHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHH
Q 012909 211 YKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290 (453)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k 290 (453)
.+.+.+ + +.++|||+|++||++.++++.. ++.+++|+++
T Consensus 228 ~~~i~~-~-------l~~~did~~v~Hq~~~~i~~~~------------------------~~~lgl~~ek--------- 266 (321)
T 3il6_A 228 SQNILS-L-------VTDETVDYLLLHQANVRIIDKI------------------------ARKTKISREK--------- 266 (321)
T ss_dssp HHHHHT-T-------CCGGGCSEEEECCSCHHHHHHH------------------------HHHHTCCGGG---------
T ss_pred HHHHHH-H-------cCcccCCEEEEcCCCHHHHHHH------------------------HHHcCcCHHH---------
Confidence 332222 1 2379999999999999998773 3445777763
Q ss_pred HHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCC--CEEEEEEecchhhheeeEEEE
Q 012909 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEG--KRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~G--d~ill~syGsG~~~~~~~l~~ 360 (453)
+.. ..+++|||++||+|++|.+++++ +++++| |+|+|++||+|++|++.++++
T Consensus 267 -------------~~~---~l~~~GNt~sasi~~~L~~~~~~-g~~~~G~~d~vll~~fG~G~t~~~~~l~v 321 (321)
T 3il6_A 267 -------------FLT---NMDKYGNTSAASIPILLDEAVEN-GTLILGSQQRVVLTGFGGGLTWGSLLLTL 321 (321)
T ss_dssp -------------BCC---CGGGTCBCGGGHHHHHHHHHHHT-TSSCTTSCCEEEEEEEETTTEEEEEEEEC
T ss_pred -------------hhh---hHhhcccHHHHHHHHHHHHHHHh-CCCCCCCCCEEEEEEEehhheeEEEEEEC
Confidence 211 24899999999999999999998 788999 999999999999999999875
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=330.16 Aligned_cols=289 Identities=17% Similarity=0.185 Sum_probs=213.7
Q ss_pred CCceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCC--CHHHHHHHHHHHHHHHcCCCcCCcC
Q 012909 5 HPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVE--DVISMSLTVVTSLLEKYKIDPTQIG 80 (453)
Q Consensus 5 ~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~e--d~~~la~~Aa~~aL~~agi~~~~Id 80 (453)
+.++|+|.+++.|+|++.++++++++. ++..+. ++||.+|+ +++++| ++.+|+++|++++|+++|++|++||
T Consensus 2 ~~~~v~I~g~g~ylP~~~~~~~~~~~~--~~~~~~~~~tGi~~r~--~a~~~e~~~~~~La~~Aa~~aL~~ag~~~~dId 77 (357)
T 3s3l_A 2 RWENLFVSGVAAWLPPLSTAQDAVMAG--LLDPARSKLRGIESVT--VASDAEEDAPPRMAARAARAALGRGDVDPADVS 77 (357)
T ss_dssp BCSSCEEEEEEEECCCEEEHHHHHHTT--SSCHHHHHHHCCCEEE--CCCSSGGGSHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CcCceEEEEEEEECCCCCCHHHHHHhc--CCcHHHHHHcCceEEE--ecCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 457899999999999988888877654 333232 45666665 446666 9999999999999999999999999
Q ss_pred EEEEEccc--CCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCC--eEEEEEeecc---
Q 012909 81 RLEVGSET--VIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGR--YGLVVCTDTA--- 153 (453)
Q Consensus 81 ~li~~t~s--~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~--~aLVv~~d~~--- 153 (453)
.||++|++ ..+. ++.+.+|+..||+ +++++++++++|+|++.||..|..+|++|.. + +||||++|.+
T Consensus 78 ~vi~~t~~~~~~d~-~~~a~~v~~~lG~---~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~--~~~~vLvvg~e~~s~~ 151 (357)
T 3s3l_A 78 LVLHSSLWFQGIDL-WPAASYVAHEAVG---RHVPAFGLAQRCNGGMGAIELAGAYLGSGIG--AGHAALLTTGDRFAGP 151 (357)
T ss_dssp EEEEECSSCCSSSS-SCHHHHHHHHHTC---SSSCEEEEECGGGHHHHHHHHHHHHHHTTSS--SSSEEEEEEEECCCTT
T ss_pred EEEEEeccCCCccc-ccHHHHHHHHhCC---CCCcEEEEcCccHHHHHHHHHHHHHHHcCCC--CCCEEEEEEEeccccc
Confidence 99999984 2332 3679999999998 6799999999999999999999999999965 7 9999999986
Q ss_pred ----------------ceeeeecCCCCceeccCceeeecc---ccccccccCCC--------CCCceecCcchHH-----
Q 012909 154 ----------------AVAMLIGPDAPIAFESKLRGSHMS---HAYDFYKPNLA--------SEYPVVDGKLSQT----- 201 (453)
Q Consensus 154 ----------------AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df~~p~~~--------~~~~~vdG~~s~~----- 201 (453)
|+|+||++++.. .++.++.+. ...+++++... ..+..++|+....
T Consensus 152 ~~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 228 (357)
T 3s3l_A 152 RIDRWNSVDVTMYGDGAAALVLSTRDGF---ARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELAD 228 (357)
T ss_dssp TCCTTTSSSSCCBCCEEEEEEEESSCCS---EEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHC
T ss_pred ccccccccCCcccccccEEEEEecCCCC---CeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccc
Confidence 899999887531 111122111 11233332210 0122344442111
Q ss_pred ------HHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEe-cCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCC
Q 012909 202 ------CYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVF-HSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPY 274 (453)
Q Consensus 202 ------~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~-H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~ 274 (453)
.+.+.+..+.+.++ +++|++++|||+|++ ||++.+ ++. +.+.
T Consensus 229 ~~~~~~~~~~~~~~~i~~~L------~~~gl~~~did~~v~~hq~~~~-~~~------------------------~~~~ 277 (357)
T 3s3l_A 229 LPDLTHRYIDLLVAAKTQAL------EDAGTAIEDIAHAVIPVSRRGT-GHE------------------------LHDL 277 (357)
T ss_dssp CTTHHHHHHHHHHHHHHHHH------HHTTCCGGGCSEEECCSCCCCS-SCC------------------------HHHH
T ss_pred hhhhHHHHHHHHHHHHHHHH------HHcCCCHHHCCEEEecCcChHH-HHH------------------------HHHH
Confidence 12233333333333 445799999999996 999877 544 3345
Q ss_pred CCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhhe
Q 012909 275 STLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTAT 354 (453)
Q Consensus 275 l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~ 354 (453)
+++|.++. +.+ +.+++|||++||+|++|.+++++ +++++||+|+|++||+|++|+
T Consensus 278 lgl~~ek~---------~~~---------------~~~~~GNt~aAsipl~L~~~~~~-g~l~~Gd~vll~~fG~G~t~~ 332 (357)
T 3s3l_A 278 LGLPDERT---------SWA---------------YGRTTGHVGAGDQYAGLAHLVEN-ALVQPGDRVLLFGGGAGYTCT 332 (357)
T ss_dssp HTSCGGGB---------THH---------------HHHHHCBCTTCHHHHHHHHHHHT-TCCCTTCEEEEECCBTTTEEE
T ss_pred cCCCHHHh---------HHH---------------hccccccchHhHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhe
Confidence 68887732 222 23689999999999999999998 789999999999999999999
Q ss_pred eeEEEEec
Q 012909 355 MFSLQLQE 362 (453)
Q Consensus 355 ~~~l~~~~ 362 (453)
+.+++|.+
T Consensus 333 a~ll~~~~ 340 (357)
T 3s3l_A 333 AAVVEILR 340 (357)
T ss_dssp EEEEEECC
T ss_pred eeeEEecc
Confidence 99999975
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=330.93 Aligned_cols=295 Identities=15% Similarity=0.140 Sum_probs=218.5
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh------------------------CCCcCee--eEcccceEEeccCC------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD------------------------GVSKGKY--TVGLGQDCMAFCSE------ 53 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~------------------------g~~~~k~--~~Gig~r~~av~~~------ 53 (453)
.+++.|.++|.|+|++.|+|+|+++.+ +.+.+|+ ++||.+|+++.+..
T Consensus 22 ~~~~~I~gig~~~P~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~I~~~tGI~~R~~a~~~~~~~~~~ 101 (392)
T 3led_A 22 VRPAVIAATGLYTPPDSVSNAELVEAFNTYVANFNAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDPDV 101 (392)
T ss_dssp CCCEEEEEEEEECCSEEEEHHHHHHHHHHHHHHHHHHTHHHHHTTSSCCCCCCCHHHHHHHHCCCEEEESCCGGGGCTTT
T ss_pred cCceEEEEEEEeCCCceEcHHHHHHHHhhhhcccccccchhhhcccccccCCCcHHHHHHccCCceEEEecCcccccccc
Confidence 467999999999999999999998642 2345677 57999998864321
Q ss_pred ---------C---CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcC
Q 012909 54 ---------V---EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNAC 121 (453)
Q Consensus 54 ---------~---ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC 121 (453)
+ +.+.+|+++|+++||+++|++|++||.||++|+++++..|+.+..|+..||+ +++++|+.++|
T Consensus 102 ~~~~~~~r~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~vi~~t~t~~~~~p~~a~~v~~~LGl----~~~~~dv~~aC 177 (392)
T 3led_A 102 MRPIIPERSNDELSILAEMAVTAAEQAIERWGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGL----GGFAFDMNVAC 177 (392)
T ss_dssp CSCCCCCCCTTSCCHHHHHHHHHHHHHHHHHCSCGGGEEEEEEESSCCSCSBSCHHHHHHHHTTC----CSEEEEEECGG
T ss_pred cccccccchhcccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCccHHHHHHHHHhCC----CCeEEEECCcc
Confidence 1 1368999999999999999999999999999999988899999999999998 37899999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc------------------ceeeeecCCCCceeccCceeeecccc--c-
Q 012909 122 YGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------------AVAMLIGPDAPIAFESKLRGSHMSHA--Y- 180 (453)
Q Consensus 122 ~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~--~- 180 (453)
+|++.||..|..+|++|.. ++||||++|.+ |+|+||++.+.-.-..++.++.+... .
T Consensus 178 ~g~~~aL~~A~~~i~~g~~--~~vLvvg~E~~S~~~d~~dr~t~~lFGDGA~A~vl~~~~~~~~~~~i~~~~~~s~~~~~ 255 (392)
T 3led_A 178 SSATFGLKTAADFVGGGSV--DAVLMVNPEICSGHLNFRDRDSHFIFGDVATAAIVERADDAQGGWSILGTKLKTQFSNN 255 (392)
T ss_dssp GHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTCTTTTTTBCEEEEEEEEEEGGGCCSSEEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHCCCC--CEEEEEeehhcCCcCCcCcccCCcccccccEEEEEEecCCCCCCCeEEEEEEEEccccc
Confidence 9999999999999999955 99999999987 89999987642000001111111100 0
Q ss_pred -----ccccc---C---CCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHH
Q 012909 181 -----DFYKP---N---LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFA 249 (453)
Q Consensus 181 -----df~~p---~---~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~ 249 (453)
.+..| . ....+..++|+.. |..++..+.+.+.+.+ +++|++++|||+|++||+|.+|++...+
T Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v---~~~a~~~~~~~i~~~L---~~~gl~~~dId~~v~Hqan~~i~~~~~~ 329 (392)
T 3led_A 256 IRNNAGFLNRAWPEGRDKADKLFVQQGRKV---FKEVVPLVSEMIIEHA---REIGIDPHGLKRMWLHQANINMNEIIGR 329 (392)
T ss_dssp EEBCCSGGGGGSGGGTTSGGGSCEECHHHH---HHHHHHHHHHHHHHHH---HHTTCCGGGCSEEEECSSCHHHHHHHHH
T ss_pred cccCCCcccCCCccccccccceEEechHHH---HHHHHHHHHHHHHHHH---HHcCCCHHHCcEEEEcCCCHHHHHHHHH
Confidence 01111 0 0012345677755 4444443333333333 3457999999999999999999988554
Q ss_pred hhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHH
Q 012909 250 RLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASL 329 (453)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sl 329 (453)
+++- ++++.++ .....+++|||++||+|++|..+
T Consensus 330 ~llg---------------------l~~~~~k-------------------------~~~~l~~~GNtssAsipl~L~~~ 363 (392)
T 3led_A 330 KVLG---------------------RDPTRDE-------------------------NVIILDDYANTSSAGSIIAFHKH 363 (392)
T ss_dssp HHHT---------------------SCCCTTT-------------------------BCCCHHHHCBCGGGHHHHHHHHC
T ss_pred HhcC---------------------CCCCHHH-------------------------HHHHHhhhCccHHHHHHHHHHHH
Confidence 4320 0233331 12234899999999999999986
Q ss_pred HhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 330 LHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 330 l~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
. +++++||+|+|++||+|++|++.+++|.
T Consensus 364 --~-~~~~~Gd~vll~gfG~G~t~~~~ll~~~ 392 (392)
T 3led_A 364 --Q-DDMAQGDLGLICSFGAGYSAGTVFVQKR 392 (392)
T ss_dssp --C-TTCCTTCEEEEEEEETTTEEEEEEEEEC
T ss_pred --h-CCCCCCCEEEEEEEChhhEeEEEEEEEC
Confidence 3 5688999999999999999999999973
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=316.29 Aligned_cols=287 Identities=20% Similarity=0.213 Sum_probs=227.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|+++|.++++|+|+.+++++++++..+.+++|+ +.||.+|++ +.++++..+|+++|++++|+++|++|++||.|++
T Consensus 1 ~~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~--~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (317)
T 1hnj_A 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI--AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVV 78 (317)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CCcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEEe--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999988888887 356666664 4778999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|.++.+..|+.+.+|+..||+ ++.+++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 79 g~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~ 153 (317)
T 1hnj_A 79 ATTSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGT 153 (317)
T ss_dssp ECSCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCeEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCchhccc
Confidence 9999988788999999999998 4479999999999999999999999999965 99999999975
Q ss_pred -------ceeeeecCCCC--c-eeccCceeeecccccc-ccccCC------CCCCceecCcchHHHHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAP--I-AFESKLRGSHMSHAYD-FYKPNL------ASEYPVVDGKLSQTCYLMALDSCYKYFCQ 216 (453)
Q Consensus 154 -------AvA~Ll~~~~~--l-~~~~~~~~~~~~~~~d-f~~p~~------~~~~~~vdG~~s~~~y~~al~~~~~~~~~ 216 (453)
|+|+||++.+. + ... .+++.. ..| +..|.+ ...++.++|+.+...+.+.+..+.+..++
T Consensus 154 ~~~~GdGA~A~vL~~~~~~~i~~~~---~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~ 229 (317)
T 1hnj_A 154 IIIFGDGAGAAVLAASEEPGIISTH---LHADGS-YGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLA 229 (317)
T ss_dssp HTTBCCEEEEEEEEEESSCSEEEEE---EEECGG-GGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEecCCCceeeEE---EEEcCC-CCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 88889976542 1 111 111111 112 222321 11245677876655555555556555554
Q ss_pred HHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHH
Q 012909 217 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVA 296 (453)
Q Consensus 217 ~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~ 296 (453)
+ +|++++||||+++|+++.++.+.. .+.++++.++
T Consensus 230 ~------agl~~~did~v~~H~~~~~~~d~i------------------------~~~lg~~~~~--------------- 264 (317)
T 1hnj_A 230 A------NNLDRSQLDWLVPHQANLRIISAT------------------------AKKLGMSMDN--------------- 264 (317)
T ss_dssp H------TTCCGGGCCEEEECCSCHHHHHHH------------------------HHHTTCCGGG---------------
T ss_pred H------cCCCHHHCCEEEEcCCCHHHHHHH------------------------HHHcCCCHHH---------------
Confidence 4 469999999999999999998752 2334665542
Q ss_pred HHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 297 KQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 297 ~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
+. ....++||+++||++++|.+++++ +++++|++|++++||+|++|++.+++|
T Consensus 265 -------~~---~~~~~~Gn~~~As~~~~L~~~~~~-~~~~~G~~vll~~~G~G~t~~~~~l~~ 317 (317)
T 1hnj_A 265 -------VV---VTLDRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGGGFTWGSALVRF 317 (317)
T ss_dssp -------BC---CCHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -------hH---hhHhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEchhheeEEEEEEC
Confidence 21 112689999999999999999998 788999999999999999999999986
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.59 Aligned_cols=289 Identities=17% Similarity=0.196 Sum_probs=228.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|+++|.++++|+|+++++++++++..+.+.+|+ +.||.+|+++ .+ ++..+|+++|++++|+++|+ ++||.|++
T Consensus 4 m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~-~~~~~la~~Aa~~al~~ag~--~~id~vi~ 78 (331)
T 2x3e_A 4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIA--GD-LGSGDLALRAASAALASAGL--ERVDAVVL 78 (331)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEECC--TT-CCHHHHHHHHHHHHHHHHTC--SCCSEEEE
T ss_pred ceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEec--CC-CCHHHHHHHHHHHHHHhCCc--ccCCEEEE
Confidence 689999999999999999999999998888887 4577776653 33 89999999999999999999 89999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|+++++..|+.+.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 79 ~t~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 153 (331)
T 2x3e_A 79 ATSTGDFCCPATAPRVAARLGL---VGALAFDLSAAATGFVYGLASVGSLISAGLA--DSALLVGVDTFSHTLDPADRST 153 (331)
T ss_dssp ECSSCSEEESCSHHHHHHHTTC---TTSEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTCHHH
T ss_pred EeCCCCCCCChHHHHHHHHhCC---CCCcEEEEcCcChHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccCCCcccccc
Confidence 9999887788999999999998 4589999999999999999999999999965 99999999975
Q ss_pred -------ceeeeecCCCCceeccCceeeecc---ccccc-cccCCC---------CCCceecCcchHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAPIAFESKLRGSHMS---HAYDF-YKPNLA---------SEYPVVDGKLSQTCYLMALDSCYKY 213 (453)
Q Consensus 154 -------AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df-~~p~~~---------~~~~~vdG~~s~~~y~~al~~~~~~ 213 (453)
|+|+||++.+.. -..++.++... ...|+ +.|.++ ..+..++|+.....+.+.+..+.+.
T Consensus 154 ~~~~GdGA~A~vL~~~~~a-~~~~i~~~~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~ 232 (331)
T 2x3e_A 154 RALFGDGAGAVVLRAGDAE-EEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRR 232 (331)
T ss_dssp HHHBCCEEEEEEEEEECTT-STTBEEEEEEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred ceeeccccEEEEEEecCCC-CCCceEEEEEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHH
Confidence 889999765410 00111111111 11122 223211 1245678887766555666666666
Q ss_pred HHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHH
Q 012909 214 FCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQ 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~ 293 (453)
++++. |++++|||+|++|+++.++.++.. +.++++.++
T Consensus 233 aL~~a------gl~~~did~~~~H~~~~~~~d~~~------------------------~~lg~~~~~------------ 270 (331)
T 2x3e_A 233 VLDRV------GWQASDLHHLVPHQANTRILAAVA------------------------DQLDLPVER------------ 270 (331)
T ss_dssp HHHHH------TCCGGGCSEEEECCCCHHHHHHHH------------------------HHHTCCGGG------------
T ss_pred HHHHc------CCCHHHCCEEEEcCCCHHHHHHHH------------------------HHcCCCHHH------------
Confidence 66554 589999999999999999987733 233565542
Q ss_pred HHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 294 QVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 294 ~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
+..+ ..++||+++||++++|.+++++ +++++|++|++++||+|+++++++++|.+
T Consensus 271 ----------~~~~---~~~~Gnt~sAs~~~~L~~~~~~-~~~~~G~~vll~~~G~G~~~~~~~l~~~~ 325 (331)
T 2x3e_A 271 ----------VVSN---IAEVGNTVAASIPLALAHGLRQ-GILRDGGNMVLTGFGAGLTWGSVALRWPK 325 (331)
T ss_dssp ----------BCCC---HHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ----------Hhhh---HhhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEeHHhhheeeEEEECC
Confidence 2111 2689999999999999999998 78899999999999999999999999965
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=313.91 Aligned_cols=291 Identities=19% Similarity=0.203 Sum_probs=228.8
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEE
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLE 83 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li 83 (453)
+++++|.+++.|+|+.+++++++++..+.+++|+ +.||.+|+ ++.++++..+|+++|++++|+++|++|++||.|+
T Consensus 9 ~~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi 86 (339)
T 1mzj_A 9 RRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDLVV 86 (339)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEE
T ss_pred cCceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEE--EeCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 4679999999999999999999999988888887 35666665 4477899999999999999999999999999999
Q ss_pred EEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc----------
Q 012909 84 VGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---------- 153 (453)
Q Consensus 84 ~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~---------- 153 (453)
++|.++.+..|+.+.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 87 ~gt~~~~~~~p~~a~~v~~~lgl---~~~~~~~v~~aCas~~~Al~~A~~~i~~G~~--~~vLv~g~e~~s~~~~~~d~~ 161 (339)
T 1mzj_A 87 VSTMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLADRS 161 (339)
T ss_dssp EECSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSCTT
T ss_pred EEecCCCCCCChHHHHHHHHhCC---CCccEEEccccchHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCccccc
Confidence 99999988788999999999998 4589999999999999999999999999965 99999999975
Q ss_pred --------ceeeeecCCCCceeccCceeeecc---ccccccc-----cCC------CCCCceecCcchHHHHHHHHHHHH
Q 012909 154 --------AVAMLIGPDAPIAFESKLRGSHMS---HAYDFYK-----PNL------ASEYPVVDGKLSQTCYLMALDSCY 211 (453)
Q Consensus 154 --------AvA~Ll~~~~~l~~~~~~~~~~~~---~~~df~~-----p~~------~~~~~~vdG~~s~~~y~~al~~~~ 211 (453)
|+|+||++.+.. ++.++... ...|.+. |.. ...+..++|+.+...+.+.+..++
T Consensus 162 ~~~~~GdGA~A~vL~~~~~~----~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i 237 (339)
T 1mzj_A 162 LSFLFGDGAGAAVVGPSDVP----GIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAA 237 (339)
T ss_dssp TTTTBCEEEEEEEEEEESSC----CBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHH
T ss_pred cceEeccCceEEEEEecCCC----CeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHH
Confidence 888899765320 11111100 1112211 210 122456788776555555555555
Q ss_pred HHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHH
Q 012909 212 KYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291 (453)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~ 291 (453)
+.++ +++|++++|||||++|+++.++.+... +.++++.++
T Consensus 238 ~~aL------~~agl~~~did~v~~H~~~~~~~d~i~------------------------~~lg~~~~~---------- 277 (339)
T 1mzj_A 238 REAL------EVAGLTVGDLVAFVPHQANLRIIDVLV------------------------DRLGVPEHV---------- 277 (339)
T ss_dssp HHHH------HTTTCCGGGCSEEEECCSCHHHHHHHH------------------------HHHTCCTTS----------
T ss_pred HHHH------HHcCCCHHHCCEEEECCCCHHHHHHHH------------------------HHhCCCccc----------
Confidence 5444 345799999999999999999987632 233555430
Q ss_pred HHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
|+..+ ..++||+++||++++|..++++ +++++|++|++++||+|+++++++++|.+
T Consensus 278 -----------~~~~~---~~~~Gn~~sAs~~~~L~~~~~~-g~~~~G~~vll~~~G~G~t~~~~~l~~~~ 333 (339)
T 1mzj_A 278 -----------VVSRD---AEDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGFGAGLSYAGQALLLPD 333 (339)
T ss_dssp -----------EECCT---HHHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred -----------eeeeh---hhhcCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhheeEEEEEEeCC
Confidence 12111 1689999999999999999998 78899999999999999999999999964
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=322.81 Aligned_cols=298 Identities=17% Similarity=0.165 Sum_probs=228.3
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCCCc---------Cee--eEcccceEE-eccCC--------------------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSK---------GKY--TVGLGQDCM-AFCSE-------------------- 53 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~---------~k~--~~Gig~r~~-av~~~-------------------- 53 (453)
.|+++|.+++.|+|+++++++++++..+... +|+ ++||++|++ +.++.
T Consensus 30 ~~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~ 109 (393)
T 1ted_A 30 TTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLF 109 (393)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHH
T ss_pred CcccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHH
Confidence 3569999999999999999999999877653 344 579998887 54210
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCV 132 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~AL~~A~ 132 (453)
+++..+|+++|++++|+++|++|++||.||++|+++ +..|+.+.+|+..||+ +..++++++ .++|+|++.||..|.
T Consensus 110 ~~~~~~la~~Aa~~aL~~agl~~~~Id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCas~~~Al~~A~ 186 (393)
T 1ted_A 110 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTAT 186 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccChHHHHHHHHcCc--CCCcceeEeccchhHHHHHHHHHHH
Confidence 467899999999999999999999999999999998 5688999999999999 556888998 899999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCc-eecc---Cceeeecc---c--ccc
Q 012909 133 NWVESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPI-AFES---KLRGSHMS---H--AYD 181 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l-~~~~---~~~~~~~~---~--~~d 181 (453)
.+|++|.. ++|||+++|.+ |+|+||++.+.. .-.. .+.+..+. + ..+
T Consensus 187 ~~i~~G~~--~~vLv~g~e~~s~~~~~~~~r~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~ 264 (393)
T 1ted_A 187 NYVRAHPA--MKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGI 264 (393)
T ss_dssp HHHHHSTT--CEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTSE
T ss_pred HHHHcCCC--CEEEEEEEEeccccCCCCCCHHHhhhhhhhcCccEEEEEecCCCccccCcceeeeeccceEEcCCchhhc
Confidence 99999965 99999999975 889999765421 0000 01121111 1 112
Q ss_pred ccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCC
Q 012909 182 FYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNAS 261 (453)
Q Consensus 182 f~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~ 261 (453)
+|++. ...+..++|+.....+.+.+..+++.++++ +|++++|||+|++||++.++++..
T Consensus 265 ~~~~~-~~g~~~~~g~~v~~~~~~~~~~~i~~aL~~------agl~~~dId~~~~H~~~~~i~d~~-------------- 323 (393)
T 1ted_A 265 VLGVN-HNGITCELSENLPGYIFSGVAPVVTEMLWD------NGLQISDIDLWAIHPGGPKIIEQS-------------- 323 (393)
T ss_dssp EEEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHH------TTCCGGGCSCEEECCSCHHHHHHH--------------
T ss_pred cceec-CCCeEEecCchHHHHHHHHHHHHHHHHHHH------cCCCHhHCCEEEECCCcHHHHHHH--------------
Confidence 33322 112344577776555556666666666554 469999999999999999998763
Q ss_pred chhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcC-CCCC
Q 012909 262 SVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSS-LEGK 340 (453)
Q Consensus 262 ~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~-~~Gd 340 (453)
++.+|++.++ +.. ++...+++|||++||++++|.+++++ +++ ++|+
T Consensus 324 ----------~~~lgl~~~k---------~~~-------------s~~~~~~~GNt~sAsi~~~L~~~~~~-g~~~~~Gd 370 (393)
T 1ted_A 324 ----------VRSLGISAEL---------AAQ-------------SWDVLARFGNMLSVSLIFVLETMVQQ-AESAKAIS 370 (393)
T ss_dssp ----------HHHHTCCGGG---------GHH-------------HHHHHHHHCBCTHHHHHHHHHHHHHS-CSSSSSSE
T ss_pred ----------HHHcCCCHHH---------HHH-------------HHHHHHhhCCchHhHHHHHHHHHHhc-CccCCCCC
Confidence 2345777762 221 11123799999999999999999998 777 5999
Q ss_pred EEEEEEecchhhheeeEEEEec
Q 012909 341 RVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 341 ~ill~syGsG~~~~~~~l~~~~ 362 (453)
+|++++||+|++|++++++|..
T Consensus 371 ~vll~~~G~G~t~~~~~l~~~~ 392 (393)
T 1ted_A 371 TGVAFAFGPGVTVEGMLFDIIR 392 (393)
T ss_dssp EEEEEEEETTTEEEEEEEEECC
T ss_pred eEEEEEeccchhhhhhheeecc
Confidence 9999999999999999999864
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=317.79 Aligned_cols=293 Identities=16% Similarity=0.132 Sum_probs=215.4
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh---CCCcCe---------e--eEcccceEEeccCCCC-----------------
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD---GVSKGK---------Y--TVGLGQDCMAFCSEVE----------------- 55 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~---g~~~~k---------~--~~Gig~r~~av~~~~e----------------- 55 (453)
..++|.+++.|+|+++|+|+|+++.. ..+.++ + ++||.+|+++. ++|
T Consensus 15 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~--~~e~~~~~~~~~~~~~p~~~ 92 (393)
T 3ov2_A 15 GPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHL--TEEILKERPKLCSYKEASFD 92 (393)
T ss_dssp SCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSC--CHHHHHHSGGGGSSSSCCHH
T ss_pred CCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeec--ChhhhccCcccccCCCCCHH
Confidence 46999999999999999999999874 233332 4 47888888753 332
Q ss_pred --------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee-EEeeCCcChhHHH
Q 012909 56 --------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGTA 126 (453)
Q Consensus 56 --------d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~-~~dv~~aC~gg~~ 126 (453)
++.+|+++|+++||+++|++|++||.||++|+++ +..|+++.+|++.||+ +..+. ++++.++|+|++.
T Consensus 93 ~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~dId~vi~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~v~~~C~g~~~ 169 (393)
T 3ov2_A 93 DRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISG-IDMPGADYRLATLLGL--PLTVNRLMIYSQACHMGAA 169 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CCBSCHHHHHHHHHTC--CTTSEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CCCCCHHHHHHHHcCC--CCCcceeeEEcCccHHHHH
Confidence 5899999999999999999999999999999999 6789999999999998 44453 8999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeeccccccc
Q 012909 127 ALFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDF 182 (453)
Q Consensus 127 AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df 182 (453)
||..|..+|++|.. ++||||++|.+ |+|+||++++...+......... ....
T Consensus 170 al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~--~~~~ 245 (393)
T 3ov2_A 170 MLRIAKDLAENNRG--ARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAA--AMQE 245 (393)
T ss_dssp HHHHHHHHHHHSTT--CEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTCCCSEEEEE--EEEE
T ss_pred HHHHHHHHHHcCCC--CEEEEEEEeccchhccCCcccchhhhcccccccCccEEEEEEecCCCcccCceeEEEe--cCcE
Confidence 99999999999955 99999999976 88999987653110100000000 0001
Q ss_pred cccCCCCC----------CceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-cCccEEEecCcchHHHHHHHHhh
Q 012909 183 YKPNLASE----------YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM-LDVDYFVFHSPYNKLVQKSFARL 251 (453)
Q Consensus 183 ~~p~~~~~----------~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~d~d~~v~H~p~~km~~ka~~~l 251 (453)
..|..... +..++ +.........+..+.+.++ +++|++. +|+ +|++||+|.+|++..
T Consensus 246 ~~p~~~~~~~~~~~~~g~~~~~~-~~v~~~~~~~~~~~i~~~L------~~~gl~~~~di-~~v~Hq~n~~i~~~v---- 313 (393)
T 3ov2_A 246 TVAESQGAVGGHLRAFGWTFYFL-NQLPAIIADNLGRSLERAL------APLGVREWNDV-FWVAHPGNWAIIDAI---- 313 (393)
T ss_dssp ECTTCTTSEEEEEETTEEEEEEC-TTHHHHHHTTSHHHHHHHH------GGGTCCSGGGS-EEEECCCCHHHHHHH----
T ss_pred EecCCcccCceeeeCCceEEEEC-cHHHHHHHHHHHHHHHHHH------HHcCCCcccCc-EEEECCCChHHHHHH----
Confidence 12221100 11222 3322222222333333333 3456886 888 999999999998773
Q ss_pred hhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh
Q 012909 252 FFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH 331 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~ 331 (453)
++.+|+++++ ...+ +...+++|||++||+|++|..+++
T Consensus 314 --------------------~~~Lgl~~ek---------~~~s-------------~~~l~~~GNtssAsip~~L~~~~~ 351 (393)
T 3ov2_A 314 --------------------EAKLQLSPDK---------LSTA-------------RHVFTEYGNMQSATVYFVMDELRK 351 (393)
T ss_dssp --------------------HHHHTCCTTT---------THHH-------------HHHHHHHCBCGGGHHHHHHHHHHH
T ss_pred --------------------HHHcCCCHHH---------HHHH-------------HHHHHHhCChHHhHHHHHHHHHHH
Confidence 3445788763 2222 122389999999999999999997
Q ss_pred h---cCcCCCC---CEEEEEEecchhhheeeEEEEec
Q 012909 332 E---KHSSLEG---KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 332 ~---~~~~~~G---d~ill~syGsG~~~~~~~l~~~~ 362 (453)
+ .|++++| |+|+|++||+|++|+++++++.+
T Consensus 352 ~~~~~g~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 388 (393)
T 3ov2_A 352 RSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSMP 388 (393)
T ss_dssp HHHHTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred hhhhcCCcCCCCCCCeEEEEEECccceeeeeeeEEcc
Confidence 4 2677889 99999999999999999999987
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=320.60 Aligned_cols=306 Identities=16% Similarity=0.183 Sum_probs=225.8
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhhCC----C--cCe---e--eEcccceEEeccCCC------------------
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGV----S--KGK---Y--TVGLGQDCMAFCSEV------------------ 54 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~----~--~~k---~--~~Gig~r~~av~~~~------------------ 54 (453)
.+.+++.|.+++.|+|++.|+|+++++..+. . .+| + ++||.+|+++..+..
T Consensus 27 ~~~~~v~I~gigt~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~p~~~~~~~ps~~~r~~~~ 106 (465)
T 3e1h_A 27 AGELGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVF 106 (465)
T ss_dssp -CCCCEEEEEEEEECCSSCCBCTHHHHHTCSSSCCCHHHHHHHHHTTTSCCCCBCCSSCTTCGGGSSSSCCCHHHHHHHH
T ss_pred CCCCCEEEEEEEEECCCcEEcHHHHHHHHHHhcccchhHHHHHHHHHhcCCceEEEeecccCcccccccCCCHHHHHHHH
Confidence 5678999999999999999999999766431 2 133 3 479999987643211
Q ss_pred -CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHHHHHHH
Q 012909 55 -EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCV 132 (453)
Q Consensus 55 -ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~AL~~A~ 132 (453)
+++.+|+++|+++||+++|++|+|||+||++|++ .+..|+++.+|++.||+ ++.+.++++ .++|+|++.||.+|.
T Consensus 107 ~~~a~~La~~Aa~~AL~~agi~~~dId~li~~t~t-~~~~P~~a~~v~~~LGl--~~~~~~~dv~~~~Csgg~~AL~~A~ 183 (465)
T 3e1h_A 107 MSDGVPLAVEASRKAMAEARLVPAQITHMVSTTCT-DSANPGYDHYVAKELGL--SDRLEKVLLHGIGCSGGLAALRTAA 183 (465)
T ss_dssp HHHTHHHHHHHHHHHHHHHTCCGGGCCEEEEECSS-CCCSSCHHHHHHHHHTC--CTTCEEEEECSCGGGHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHhCC--CCCeeEEEecCCcchHHHHHHHHHH
Confidence 2357999999999999999999999999999988 56789999999999999 455569999 799999999999999
Q ss_pred HHHHh----CCCCCCeEEEEEeecc---------------------------ceeeeecCCCCc-eecc---Cceeeecc
Q 012909 133 NWVES----ASWDGRYGLVVCTDTA---------------------------AVAMLIGPDAPI-AFES---KLRGSHMS 177 (453)
Q Consensus 133 ~~v~s----g~~~~~~aLVv~~d~~---------------------------AvA~Ll~~~~~l-~~~~---~~~~~~~~ 177 (453)
++|++ |.. ++||||++|++ |+|+||++++.- ..+. .+.+....
T Consensus 184 ~~i~a~~~~G~~--~~vLVvg~E~~S~~~~~~~~~~~~~~~d~~t~~LFGDGAaAvVl~~~~~~~~~~~~~~~l~~~~~~ 261 (465)
T 3e1h_A 184 NLCLGHTARGKP--ARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENR 261 (465)
T ss_dssp HHHHHHHHTTCC--CEEEEEEEECCGGGHHHHHHHHHHHTCCCCHHHHBCCEEEEEEEECCTTCCTTCCCSEEEEEEEEE
T ss_pred HHHhcccccCCC--CEEEEEEEeecchhcCcccccccccccccccccccccceeEEEEEccCCCccccccceeeccceEE
Confidence 99997 754 99999999864 899999876420 0000 01111111
Q ss_pred cccc-----ccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhh-hhcCCCCccCccEEEecCcchHHHHHHHHhh
Q 012909 178 HAYD-----FYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEK-LEGRQFSMLDVDYFVFHSPYNKLVQKSFARL 251 (453)
Q Consensus 178 ~~~d-----f~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~-~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l 251 (453)
...+ -|... ...+..++|+.........+..+.+.++++.+. +..++++.+||||+ +||++.+|++..
T Consensus 262 ~~p~~~~~~~~~~~-~~g~~~~~g~~V~~~a~~~v~~~i~~~L~~~g~~L~~agl~~~DId~~-~Hqan~rIl~~v---- 335 (465)
T 3e1h_A 262 VIPDSEHDLGFDVD-PMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADFDWA-MHPGGATILSGA---- 335 (465)
T ss_dssp ECTTCTTTEEEEEE-TTEEEEEECTTHHHHHHHHHHHHHHHHHHHHGGGSCTTSCSGGGSEEE-ECCSSHHHHHHH----
T ss_pred EecCCccccCcccc-CCCceEecChHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHceEE-ecCCChHHHHHH----
Confidence 1100 01111 112345677776554555666666666665321 23467899999987 999999998873
Q ss_pred hhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHh
Q 012909 252 FFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH 331 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~ 331 (453)
++.|++++++ .. .++...+++|||++||+|++|..+++
T Consensus 336 --------------------~~~Lgl~~ek---------~~-------------~s~~~l~~yGNtsSASip~aL~~~~~ 373 (465)
T 3e1h_A 336 --------------------ESAMGLTPEH---------MR-------------ASYDRYINHGNSSSATIFSVLNRLRE 373 (465)
T ss_dssp --------------------HHHHTCCGGG---------GH-------------HHHHHHHHHCBCGGGHHHHHHHHHTS
T ss_pred --------------------HHHhCcCHHH---------hH-------------HHHHHHhcceechHhHHHHHHHHHHH
Confidence 3445788763 22 22233479999999999999999998
Q ss_pred hc-CcCCCC----CEEEEEEecchhhheeeEEEEec
Q 012909 332 EK-HSSLEG----KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 332 ~~-~~~~~G----d~ill~syGsG~~~~~~~l~~~~ 362 (453)
+. +++++| |+|+|++||+|++|++++++|..
T Consensus 374 ~~~g~l~~Gg~~~d~vll~gfG~Glt~~~~llr~~~ 409 (465)
T 3e1h_A 374 KDMDALAPGGKVKEYVVGCAFGPGINVEMCMLKRRM 409 (465)
T ss_dssp TTTTSCSSSSCCCSEEEEEEEETTTEEEEEEEEECC
T ss_pred hcccccCCCCCCCCEEEEEEEhHHHhhhheeeEEec
Confidence 62 356667 99999999999999999999976
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=302.54 Aligned_cols=285 Identities=17% Similarity=0.198 Sum_probs=229.7
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|+++|.++++|+|+.+++++++++..+.+++|+ +.||.+|+++ .+ ++..+|+++|++++|+++|++|++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~--~~-~~~~~l~~~a~~~al~~ag~~~~~id~v~~ 77 (309)
T 2ebd_A 1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIA--KE-ETITYMATQAAKEALREANLSPEELDLIIL 77 (309)
T ss_dssp CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEEC--SS-CCHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeec--CC-CCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999988888877 3688877764 33 899999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|.++.+..|+.+.+|+..||+ +.++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 78 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~~~~~ 152 (309)
T 2ebd_A 78 ATLTPQKRFPSTACLVQAQLKA---KGVYAFDISAACSGFIYALDIADSFIKSGKA--KNVLVIGAEKLSEAVDWEDRST 152 (309)
T ss_dssp ECSSCSSSSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGTCCTTCTTT
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCceEEecCccchHHHHHHHHHHHHHHCCCC--CEEEEEEecccccccCccchhh
Confidence 9999888788999999999998 4479999999999999999999999999965 99999999974
Q ss_pred -------ceeeeecCCCCceeccCceeeecc----ccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhh
Q 012909 154 -------AVAMLIGPDAPIAFESKLRGSHMS----HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE 222 (453)
Q Consensus 154 -------AvA~Ll~~~~~l~~~~~~~~~~~~----~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~ 222 (453)
|+|+||++.+.- .++.+.... ....+..|. ..++.++|+.+...+.+.+..+.+..+++.
T Consensus 153 ~~~~gdGaaA~vL~~~~~~---~~i~~~~~~~~g~~~~~~~~p~--~~~~~~~g~~~~~~~~~~~~~~i~~al~~a---- 223 (309)
T 2ebd_A 153 CVLFGDGAGAVVVTRSEDK---SDILATRMYAEGSLEELLHADN--CGYIRMKGRELFKVAVRSMEEVCREVLEKA---- 223 (309)
T ss_dssp TTTBCEEEEEEEEEECSSS---CEEEEEEEEECGGGGGGEEECT--TCCEEECHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccccEEEEEEecCCC---CceeEEEEEecCCccceeEeCC--CCeEEEccHHHHHHHHHHHHHHHHHHHHHc----
Confidence 889999876531 112122111 111233342 235577888776666667777777666654
Q ss_pred cCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhh
Q 012909 223 GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDL 302 (453)
Q Consensus 223 ~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~ 302 (453)
+++++|||++++|+++.++.+.. .+.+|++.++
T Consensus 224 --gl~~~did~~~~H~~~~~~~~~~------------------------~~~lg~~~~~--------------------- 256 (309)
T 2ebd_A 224 --GVKPEEVSLVIPHQANVRIINAL------------------------AEKLNIPKEK--------------------- 256 (309)
T ss_dssp --TCCGGGCSEEEECCSCHHHHHHH------------------------HHHTTCCGGG---------------------
T ss_pred --CCCHHHCCEEEEcCCCHHHHHHH------------------------HHHhCCCHHH---------------------
Confidence 58999999999999999987652 2334665542
Q ss_pred hcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 303 KVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 303 ~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
+.. ...++||+++||++++|.+++++ +++++|+++++++||+|+++++.+++|
T Consensus 257 -~~~---~~~~~Gh~~~As~~~~L~~~~~~-g~~~~G~~~l~~~~G~G~~~~~~~l~~ 309 (309)
T 2ebd_A 257 -VFV---NIQKYGNTSAASIPIALHEAIKE-GKVKRGDLILMTAMGGGLTWGAVLLRY 309 (309)
T ss_dssp -BCC---CHHHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred -hhh---hHhhhcchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhhEEEEEEC
Confidence 111 12689999999999999999998 788899999999999999999999886
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=304.55 Aligned_cols=288 Identities=16% Similarity=0.216 Sum_probs=228.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
|+++|.++++|+|+++++++++++..+.+++|+ ++||+.|++ ..++++..+|+++|++++|+++|++|++||.|++
T Consensus 1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~l~~~a~~~al~~ag~~~~~id~vi~ 78 (313)
T 1zow_A 1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHW--ADDDQDTSDLAYEASVKAIADAGIQPEDIDMIIV 78 (313)
T ss_dssp CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEEC--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEEe--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 468999999999999999999999988888877 567877664 4678999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|.++++..|+.+.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 79 ~~~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 153 (313)
T 1zow_A 79 ATATGDMPFPTVANMLQERLGT---GKVASMDQLAACSGFMYSMITAKQYVQSGDY--HNILVVGADKLSKITDLTDRST 153 (313)
T ss_dssp ECSSCSCSSSCHHHHHHHHHTC---CSCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SCEEEEEEEEGGGTCCTTCHHH
T ss_pred EcCCCCCCCCcHHHHHHHHhCC---CCCcEEEECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCcccccc
Confidence 9999888788999999999998 4578999999999999999999999999965 99999999975
Q ss_pred -------ceeeeecCCCCceeccCceee----eccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhh
Q 012909 154 -------AVAMLIGPDAPIAFESKLRGS----HMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLE 222 (453)
Q Consensus 154 -------AvA~Ll~~~~~l~~~~~~~~~----~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~ 222 (453)
|+|+||++.+.- .++.++ +......++.|.. ..+..++|+.....+...+..+.+..+++
T Consensus 154 ~~~~gdGa~A~vl~~~~~~---~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~i~~al~~----- 224 (313)
T 1zow_A 154 AVLFGDGAGAVIIGEVSEG---RGIISYEMGSDGTGGKHLYLDKD-TGKLKMNGREVFKFAVRIMGDASTRVVEK----- 224 (313)
T ss_dssp HTTBCEEEEEEEEEECSTT---CEEEEEEEEECGGGGGGEEECTT-TCCEEECHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred eeeeccceEEEEEEecCCC---CceeEEEEEEcCCCcCeEEecCC-CCeeEeccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 889999876420 111111 1111112333431 12345677766554555555555555544
Q ss_pred cCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhh
Q 012909 223 GRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDL 302 (453)
Q Consensus 223 ~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~ 302 (453)
++++++|||++++|+++.++.+...+ .+|++.++
T Consensus 225 -agl~~~did~~~~H~~~~~~~d~~~~------------------------~lg~~~~~--------------------- 258 (313)
T 1zow_A 225 -ANLTSDDIDLFIPHQANIRIMESARE------------------------RLGISKDK--------------------- 258 (313)
T ss_dssp -TTCCGGGCSEEEECCSCHHHHHHHHH------------------------HHTCCGGG---------------------
T ss_pred -cCCCHHHCCEEEEcCCCHHHHHHHHH------------------------HhCCCHHH---------------------
Confidence 46999999999999999999876332 23455432
Q ss_pred hcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 303 KVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 303 ~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
+.. ...++||+++||++++|.+++++ +++++|+++++++||+|+++++.+++|+
T Consensus 259 -~~~---~~~~~Gh~~~as~~~~L~~~~~~-~~~~~g~~vl~~~~G~G~t~~~~~l~~~ 312 (313)
T 1zow_A 259 -MSV---SVNKYGNTSAASIPLSIDQELKN-GKLKDDDTIVLVGFGGGLTWGAMTIKWG 312 (313)
T ss_dssp -BCC---CHHHHCBCGGGHHHHHHHHHHHT-TCCCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred -HHH---hHhhhCchHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEchhhhheEEEEEeC
Confidence 111 12689999999999999999998 7888999999999999999999999985
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=300.94 Aligned_cols=286 Identities=19% Similarity=0.181 Sum_probs=227.6
Q ss_pred eEEeEEEEEcCCceechhHHhhhhCCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc
Q 012909 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (453)
Q Consensus 9 vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t 86 (453)
++|.++++|+|+.+++++++++..+.+++|+. .||.+|+ ++.++++..+|+++|++++|+++|++|++||.|+++|
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~--~~~~~~~~~~la~~a~~~al~~ag~~~~~id~vi~~~ 79 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERR--VAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVAT 79 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEE--ECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEEC
T ss_pred cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEe--ecCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 68999999999999999999999888888874 4666555 4477899999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------------
Q 012909 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------- 153 (453)
Q Consensus 87 ~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------- 153 (453)
.++++..|+.+.+|+..||+ +++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 80 ~~~~~~~~~~a~~v~~~lgl----~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d~~~~~ 153 (322)
T 1ub7_A 80 NTPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAV 153 (322)
T ss_dssp SSCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHT
T ss_pred CCCCCCCCcHHHHHHHHhCC----CCEEEeeCccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhccccChhhcccce
Confidence 99887788899999999997 478999999999999999999999999965 99999999975
Q ss_pred -----ceeeeecCCCCceeccCceeeecc---cccc-ccc-------cCC--CCCCceecCcchHHHHHHHHHHHHHHHH
Q 012909 154 -----AVAMLIGPDAPIAFESKLRGSHMS---HAYD-FYK-------PNL--ASEYPVVDGKLSQTCYLMALDSCYKYFC 215 (453)
Q Consensus 154 -----AvA~Ll~~~~~l~~~~~~~~~~~~---~~~d-f~~-------p~~--~~~~~~vdG~~s~~~y~~al~~~~~~~~ 215 (453)
|+|+||++.+.- .++.+.... ...| +.. |.. ...+..++|+.....+.+.+..+.+..+
T Consensus 154 ~~GdGA~A~vL~~~~~~---~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al 230 (322)
T 1ub7_A 154 LFGDGGGAAVVGKVREG---YGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAI 230 (322)
T ss_dssp TBCCEEEEEEEECCCTT---CEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccEEEEEEecCCC---CceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHH
Confidence 889999876420 011111110 1112 122 221 1124567888776666666666666666
Q ss_pred HHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHH
Q 012909 216 QKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQV 295 (453)
Q Consensus 216 ~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~ 295 (453)
++. +++++|||++++|+++.++.+. +.+.++++.++
T Consensus 231 ~~a------gl~~~did~~~~H~~~~~~~d~------------------------~~~~lg~~~~~-------------- 266 (322)
T 1ub7_A 231 EKA------GLTPEDIRLFVPHQANLRIIDA------------------------ARERLGLPWER-------------- 266 (322)
T ss_dssp HHH------TCCGGGCSEEEECCSCHHHHHH------------------------HHHTTTCCGGG--------------
T ss_pred HHc------CCCHHHCCEEEEcCCCHHHHHH------------------------HHHHcCCCHHH--------------
Confidence 554 5899999999999999998765 23345666542
Q ss_pred HHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 296 AKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 296 ~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
+.. ...++||+++||++++|..++++ +++++|+++++.|||+|.++++++++|.
T Consensus 267 --------~~~---~~~~~Gh~~~As~~~~l~~~l~~-g~~~~g~~~l~~~~G~G~~~~~~vl~~~ 320 (322)
T 1ub7_A 267 --------VAV---NVDRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAGLTWAAAVLTWG 320 (322)
T ss_dssp --------BCC---CHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred --------HHH---HHHhhCcHHHHHHHHHHHHHHHh-CCCCCCCEEEEEEEChhheeEEEEEEeC
Confidence 111 12689999999999999999998 7888999999999999999999999984
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=318.44 Aligned_cols=292 Identities=15% Similarity=0.169 Sum_probs=219.3
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCC------c---Cee--eEcccceEEeccCC-----------------CCCHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVS------K---GKY--TVGLGQDCMAFCSE-----------------VEDVI 58 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~------~---~k~--~~Gig~r~~av~~~-----------------~ed~~ 58 (453)
|+++|.+++.|+|+++++++++++..+.. . +|+ ++||.+|+++ .+ +++..
T Consensus 8 ~m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~--~~~~~~~~~~~~~~r~~~~~~~~~ 85 (382)
T 1u0m_A 8 FMATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIV--QPIEDTLEHPGFEDRNKVYEREAK 85 (382)
T ss_dssp --CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEES--SCHHHHTSCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceee--cChhhhccCCChhHHHHHHHHHHH
Confidence 45899999999999999999999886543 1 234 5788888765 33 56789
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHHHHHHHHHHHh
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALFNCVNWVES 137 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~AL~~A~~~v~s 137 (453)
+|+++|++++|+++|++|++||.|+++|+++ +..|+.+.+|+..||+ +.+++++++ .++|+|++.||..|..+|++
T Consensus 86 ~la~~Aa~~aL~~agl~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~Al~~A~~~i~~ 162 (382)
T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIYVSCTG-FMMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTA 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEEECSSS-CCSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHhCC--CCCcceEEccCCcCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999988 6688999999999999 556899999 89999999999999999999
Q ss_pred CCCCCCeEEEEEeecc-----------------------ceeeeecCCCCceeccCceeeecc---cc--ccccccCCCC
Q 012909 138 ASWDGRYGLVVCTDTA-----------------------AVAMLIGPDAPIAFESKLRGSHMS---HA--YDFYKPNLAS 189 (453)
Q Consensus 138 g~~~~~~aLVv~~d~~-----------------------AvA~Ll~~~~~l~~~~~~~~~~~~---~~--~df~~p~~~~ 189 (453)
|.. ++|||+++|.+ |+|+||++.+.-. ..+.+..+. +. ...|... ..
T Consensus 163 g~~--~~vLv~g~e~~s~~~~~~d~~~~~~~~~~lfGDGA~A~vL~~~~~~g--~~i~~~~~~~~~~~~~~~~~~~~-~~ 237 (382)
T 1u0m_A 163 YPE--ANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTG--VRLERNGSYLIPKTEDWIMYDVK-AT 237 (382)
T ss_dssp STT--CEEEEEEEEEGGGGCCTTCCSHHHHHHHHHBCEEEEEEEEETTTCSE--EEEEEEEEEECSSCTTTEEEEEE-TT
T ss_pred CCC--CEEEEEEEeccchhcCcccCCHHHhhccchhcCCcEEEEEeccCCCC--cEEEEeeeEecCChHHhcCceec-CC
Confidence 965 99999999975 8899998764200 012222111 11 1112211 00
Q ss_pred CCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhh
Q 012909 190 EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKE 269 (453)
Q Consensus 190 ~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~ 269 (453)
.+....++.....+...+. +.+.++ +++|++++|||+|++|+++.++++.
T Consensus 238 g~~~~~~~~v~~~~~~~~~-~i~~aL------~~agl~~~dId~v~~H~~~~~i~d~----------------------- 287 (382)
T 1u0m_A 238 GFHFLLDKRVPATMEPLAP-ALKELA------GEHGWDASDLDFYIVHAGGPRILDD----------------------- 287 (382)
T ss_dssp EEEEEECTTTGGGHHHHHH-HHHHHH------HTTSCCSSCCSCCEEECSHHHHHHH-----------------------
T ss_pred ceEEEeCcHHHHHHHHHHH-HHHHHH------HHcCCCHHHCCEEEECCCCHHHHHH-----------------------
Confidence 0112223333222334444 444443 3457999999999999999999876
Q ss_pred hccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecc
Q 012909 270 KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGS 349 (453)
Q Consensus 270 ~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGs 349 (453)
+++.++++.++ +.. ++...+++||+++||+|++|.+++++ +++++|++|++++||+
T Consensus 288 -~~~~lgl~~~k---------~~~-------------s~~~~~~~Gnt~sAsi~~~L~~~~~~-g~~~~Gd~vll~~~G~ 343 (382)
T 1u0m_A 288 -LSTFLEVDPHA---------FRF-------------SRATLTEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGP 343 (382)
T ss_dssp -HHHHSCSCGGG---------GHH-------------HHHHHHHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEET
T ss_pred -HHHHcCCCHHH---------HHH-------------HHHHHHHhCCchhhHHHHHHHHHHHh-cCCCCCCEEEEEEEcc
Confidence 33446777762 211 11223799999999999999999998 7888999999999999
Q ss_pred hhhheeeEEEEec
Q 012909 350 GLTATMFSLQLQE 362 (453)
Q Consensus 350 G~~~~~~~l~~~~ 362 (453)
|++|++++++|..
T Consensus 344 G~t~~~~vl~~~~ 356 (382)
T 1u0m_A 344 GITAEMSLGCWQT 356 (382)
T ss_dssp TTEEEEEEEEEEC
T ss_pred cceeEEEEEEEee
Confidence 9999999999986
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=302.12 Aligned_cols=294 Identities=18% Similarity=0.214 Sum_probs=226.4
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEE
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEV 84 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~ 84 (453)
++++|.++++|+|+.+++++++++..+.+.+|+ +.||..|++ +.++++..+|+++|++++|+++|+++++||.|++
T Consensus 11 ~~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~--~~~~~~~~~la~~A~~~al~~ag~~~~~id~vi~ 88 (335)
T 1u6e_A 11 RSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRF--AADDESAASMATEACRRALSNAGLSAADIDGVIV 88 (335)
T ss_dssp SCEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEE--CCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEE
T ss_pred CceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEee--cCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 368999999999999999999999888887777 467777665 3678999999999999999999999999999999
Q ss_pred EcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------
Q 012909 85 GSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA----------- 153 (453)
Q Consensus 85 ~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~----------- 153 (453)
+|.++++..|+.+.+|+..||+ ++++++++.++|+|++.||..|..+|++|.. ++|||+++|.+
T Consensus 89 ~t~~~~~~~~~~a~~v~~~lgl---~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d~~~ 163 (335)
T 1u6e_A 89 TTNTHFLQTPPAAPMVAASLGA---KGILGFDLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGN 163 (335)
T ss_dssp ECSCCCCSSSCHHHHHHHHHTC---TTSEEEEEECGGGHHHHHHHHHHHHHHHTSC--SSEEEEEEEECGGGCCTTCTTT
T ss_pred EcCCCCCCCChHHHHHHHHhCC---CCCcEeeeccccHHHHHHHHHHHHHHHcCCC--CEEEEEEEcccccccCcccccc
Confidence 9999888889999999999998 5689999999999999999999999999965 99999999975
Q ss_pred -------ceeeeecCCCCceeccCceeeeccccc--------ccc--ccCCCCCCceecCcchHHHHHHHHHHHHHHHHH
Q 012909 154 -------AVAMLIGPDAPIAFESKLRGSHMSHAY--------DFY--KPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQ 216 (453)
Q Consensus 154 -------AvA~Ll~~~~~l~~~~~~~~~~~~~~~--------df~--~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~ 216 (453)
|+|+||++.+.-.+.....+++..... ..| .|.....+..++|+.....+...+..+.+.+++
T Consensus 164 ~~~~gDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~ 243 (335)
T 1u6e_A 164 CFIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMD 243 (335)
T ss_dssp TTTBCEEEEEEEEEECSSCCBCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeccccEEEEEEecCCCCeeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 889999876420000001111111100 011 111111234567765433344455555555555
Q ss_pred HHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHH
Q 012909 217 KFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVA 296 (453)
Q Consensus 217 ~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~ 296 (453)
+. |++++|||++++|+++.++++...+ .+|++.+.
T Consensus 244 ~a------gl~~~dId~~~~H~~~~~~~~~~~~------------------------~lg~~~~~--------------- 278 (335)
T 1u6e_A 244 AA------GVRPDQIDVFVPHQANSRINELLVK------------------------NLQLRPDA--------------- 278 (335)
T ss_dssp HH------TCCGGGCCEEEECCSCHHHHHHHHH------------------------HHTCCTTC---------------
T ss_pred Hc------CCCHHHCCEEEECCCCHHHHHHHHH------------------------HcCCCchh---------------
Confidence 44 5899999999999999999877433 23454431
Q ss_pred HHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 297 KQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 297 ~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
++..+ .+++||+++||++++|.+++++ +++++|+++++.+||+|+++++++++|.+
T Consensus 279 ------~~~~~---~~~~Gnt~sAs~~~~L~~~~~~-~~~~~g~~~l~~~~G~G~t~~~~vl~~~~ 334 (335)
T 1u6e_A 279 ------VVAND---IEHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGYGAGLSYAAQVVRMPK 334 (335)
T ss_dssp ------EECCT---HHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETTTEEEEEEEECCC
T ss_pred ------hhhhh---hhhhCcHHHHHHHHHHHHHHHc-CCCCCCCEEEEEEEehhheeEEEEEEeCC
Confidence 11111 2689999999999999999998 67889999999999999999999999854
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=309.31 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=204.7
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhC---CCcC---------ee--eEcccceEEeccCCCC----------------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDG---VSKG---------KY--TVGLGQDCMAFCSEVE---------------- 55 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g---~~~~---------k~--~~Gig~r~~av~~~~e---------------- 55 (453)
..++.|.+++.|+|+++|+|+|+++..+ .+.. ++ ++||.+|+++. ++|
T Consensus 8 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~--~~e~~~~~~~~~~~~~p~~ 85 (387)
T 3oit_A 8 DGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHH--TEEMLSAHPEFVDRDAPSL 85 (387)
T ss_dssp SSCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESC--CHHHHHHCGGGTCTTSCCH
T ss_pred CCCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeec--CHHHhccCccccccCCCCH
Confidence 3569999999999999999999998852 1221 34 47999888763 332
Q ss_pred ---------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee-EEeeCCcChhHH
Q 012909 56 ---------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGT 125 (453)
Q Consensus 56 ---------d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~-~~dv~~aC~gg~ 125 (453)
+..+|+++|+++||+++|++|++||.||++|+++ +..|+++.+|++.||+ +..+. ++++.++|+|++
T Consensus 86 ~~r~~~~~~~~~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~-~~~p~~a~~v~~~LGl--~~~~~~~~~~~~~C~~~~ 162 (387)
T 3oit_A 86 DARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSG-AHVPGVDFRLVPLLGL--RPSVRRTMLHLNGCFAGC 162 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCCEEEEEESSC-CEESCHHHHHHHHHTC--CTTCEEEEEECCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCcccHHHHHHHHhCC--CCCcceeeEECchhHHHH
Confidence 5899999999999999999999999999999999 6689999999999998 45553 899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCC-c---eeccCceeeecc
Q 012909 126 AALFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAP-I---AFESKLRGSHMS 177 (453)
Q Consensus 126 ~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~-l---~~~~~~~~~~~~ 177 (453)
.||..|..+|++|.. ++||||++|.+ |+|+||+++++ . .++ +.+....
T Consensus 163 ~al~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~--~~~~~~~ 238 (387)
T 3oit_A 163 AALRLAKDLAENSRG--ARVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFE--IVSAAQT 238 (387)
T ss_dssp HHHHHHHHHHHSSTT--CEEEEEEEECGGGTCCCCCSSSCHHHHHHHHBCCEEEEEEEESSCCSSCCCCEE--EEEEEEE
T ss_pred HHHHHHHHHHhcCCC--CEEEEEEEeccchhccCccccchHhhhcccccccceEEEEEecCCCcccCCceE--EEecccE
Confidence 999999999999954 99999999986 88999987652 1 011 1111110
Q ss_pred ------ccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcC----CCCccCcc--EEEecCcchHHHH
Q 012909 178 ------HAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR----QFSMLDVD--YFVFHSPYNKLVQ 245 (453)
Q Consensus 178 ------~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~----~~~~~d~d--~~v~H~p~~km~~ 245 (453)
+.++......+. ...++ +.......+.+..+.+.++ ++. |++ |+| +|++||+|.+|++
T Consensus 239 ~~p~~~~~~~~~~~~~g~-~~~~~-~~v~~~~~~~~~~~~~~~L------~~~~~~~gl~--d~d~~~~v~Hq~n~~il~ 308 (387)
T 3oit_A 239 IIPESDHALNMRFTERRL-DGVLG-RQVPGLIGDNVERCLLDMF------GPLLGGDGGG--GWNDLFWAVHPGSSTIMD 308 (387)
T ss_dssp ECTTCTTSEEEEECSSSE-EEEEC-TTHHHHHHHHHHHHHHHHT------GGGCC--------GGGSEEEECCCCHHHHH
T ss_pred EeCCChhhccceeecCCe-EEEEC-cHHHHHHHHHHHHHHHHHH------HhhcccCCCC--cccccEEEECCCCHHHHH
Confidence 000000000010 11222 3222222233333333332 333 454 566 9999999999988
Q ss_pred HHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHH
Q 012909 246 KSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAA 325 (453)
Q Consensus 246 ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~ 325 (453)
.. ++.||++.++ +.. ++...+++|||++||+|++
T Consensus 309 ~v------------------------~~~Lgl~~ek---------~~~-------------s~~~l~~~GNtssAsip~~ 342 (387)
T 3oit_A 309 QV------------------------DAALGLEPGK---------LAA-------------SRRVLSDYGNMSGATVIFA 342 (387)
T ss_dssp HH------------------------HHHHTCCTTT---------THH-------------HHHHHHHHCBCGGGHHHHH
T ss_pred HH------------------------HHHcCCCHHH---------HHH-------------HHHHHHHhCchHHhHHHHH
Confidence 73 3445788763 222 2222389999999999999
Q ss_pred HHHHHhhcCcCCCC------CEEEEEEecchhhheeeEEEEec
Q 012909 326 FASLLHEKHSSLEG------KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 326 L~sll~~~~~~~~G------d~ill~syGsG~~~~~~~l~~~~ 362 (453)
|..+++. ++++| |+|+|++||+|++|+++++++.+
T Consensus 343 L~~~~~~--~~~~G~~g~~~d~vll~~fG~G~t~~~~ll~~~~ 383 (387)
T 3oit_A 343 LDELRRQ--RKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATS 383 (387)
T ss_dssp HHHHHHC------------CCEEEEEEEETTTEEEEEEEEECC
T ss_pred HHHHHHh--hhccCCCCCCCCEEEEEEecccceeeeeeeEecc
Confidence 9998765 46677 89999999999999999999876
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=312.34 Aligned_cols=290 Identities=14% Similarity=0.209 Sum_probs=212.9
Q ss_pred eeEEeEEEEEcCCceechhHHhhhh-C-CC----------cCee--eEcccceEEeccCCC-------------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHD-G-VS----------KGKY--TVGLGQDCMAFCSEV------------------- 54 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~-g-~~----------~~k~--~~Gig~r~~av~~~~------------------- 54 (453)
+++|.+++.|+|+++++|+++++.. + .. .+|+ ++||.+|+++ .++
T Consensus 12 ~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~--~~~~~~~~~p~~~~~~~~~~~~ 89 (387)
T 3a5r_A 12 LATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLH--VTEEILKENPNIAAYEATSLNV 89 (387)
T ss_dssp CEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECS--CCHHHHHHCHHHHSSSSSCHHH
T ss_pred CcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEe--cChhhhccCcccccccCCCHHH
Confidence 4899999999999999999999875 2 21 1345 5788888765 333
Q ss_pred ------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee-EEeeCCcChhHHHH
Q 012909 55 ------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE-GVDSTNACYGGTAA 127 (453)
Q Consensus 55 ------ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~-~~dv~~aC~gg~~A 127 (453)
++..+|+++|+++||+++|++|++||.||++|+++ +..|+.+.+|++.||+ +..+. ++++.++|+|++.|
T Consensus 90 r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aC~s~~~a 166 (387)
T 3a5r_A 90 RHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAG-VDMPGADYQLTKLLDL--DPSVKRFMFYHLGCYAGGTV 166 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CEESCHHHHHHHHTTC--CTTCEEEEEESCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCC-CCCCcHHHHHHHHcCc--CCCcceeeeEccccHHHHHH
Confidence 57899999999999999999999999999999886 5688999999999998 45564 99999999999999
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeecccccccc
Q 012909 128 LFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFY 183 (453)
Q Consensus 128 L~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~ 183 (453)
|..|.++|++|.. ++||||++|.+ |+|+||++.+.-.+.... ..........
T Consensus 167 l~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~--~~l~~~~~~~ 242 (387)
T 3a5r_A 167 LRLAKDIAENNKG--ARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPI--FELVSTAQTI 242 (387)
T ss_dssp HHHHHHHHHHSTT--CEEEEEEEECCTTTCCCCCSSCCSSTTHHHHBCCEEEEEEEESSCCTTTCCCC--EEEEEEEEEE
T ss_pred HHHHHHHHHhCCC--CEEEEEEEeccchhhcCCCccchhhccccceeccceeEEEEecCCCccccCCc--eEEEeeeEEE
Confidence 9999999999965 99999999963 889999876421000000 0000000111
Q ss_pred ccCCCCC----------CceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCC-ccCccEEEecCcchHHHHHHHHhhh
Q 012909 184 KPNLASE----------YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFS-MLDVDYFVFHSPYNKLVQKSFARLF 252 (453)
Q Consensus 184 ~p~~~~~----------~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~d~d~~v~H~p~~km~~ka~~~l~ 252 (453)
.|..... +..+ ++.......+.+..+++.+++ ++|++ ++|| +|++||++.++++..
T Consensus 243 ~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~------~~gl~d~~di-~~v~Hq~~~~i~~~~----- 309 (387)
T 3a5r_A 243 VPESHGAIEGHLLESGLSFHL-YKTVPTLISNNIKTCLSDAFT------PLNISDWNSL-FWIAHPGGPAILDQV----- 309 (387)
T ss_dssp CTTCTTSEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHHG------GGTCCCGGGS-EEEECCSCHHHHHHH-----
T ss_pred eCCChHhcCceEcCCCeEEEe-cchHHHHHHHHHHHHHHHHHH------hcCCCChhhe-eEEECCCCHHHHHHH-----
Confidence 2321110 0112 444333333444444444443 44576 7888 899999999998763
Q ss_pred hhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhh
Q 012909 253 FNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE 332 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~ 332 (453)
++.++++.++ ++.+ +...+++|||++||+|++|..++++
T Consensus 310 -------------------~~~lgl~~ek---------~~~s-------------~~~l~~~GNtssAsi~~~L~~~~~~ 348 (387)
T 3a5r_A 310 -------------------TAKVGLEKEK---------LKVT-------------RQVLKDYGNMSSATVFFIMDEMRKK 348 (387)
T ss_dssp -------------------HHHHTCCGGG---------GHHH-------------HHHHHHHCBCGGGHHHHHHHHHHHH
T ss_pred -------------------HHHcCCChHH---------hHHH-------------HHHHHhcCCcchhHHHHHHHHHHHh
Confidence 3345777763 2221 1122799999999999999999988
Q ss_pred cCcCCCC--------CEEEEEEecchhhheeeEEEEec
Q 012909 333 KHSSLEG--------KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 333 ~~~~~~G--------d~ill~syGsG~~~~~~~l~~~~ 362 (453)
+. ++| ++|+|++||+|++|++++++|.|
T Consensus 349 -g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 384 (387)
T 3a5r_A 349 -SL-ENGQATTGEGLEWGVLFGFGPGITVETVVLRSVP 384 (387)
T ss_dssp -HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred -cc-ccCCCCCCCCcceEEEEEecCcceeeehhheecc
Confidence 45 566 99999999999999999999987
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=305.81 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=214.3
Q ss_pred CCCCceeEEeEEEEEcCCceechhHHhhhhC--C-C-------cCee--eEcccceEEeccCCC----------------
Q 012909 3 SWHPKNVGILALDIYFPPTCVLQEALEVHDG--V-S-------KGKY--TVGLGQDCMAFCSEV---------------- 54 (453)
Q Consensus 3 ~~~~~~vgI~~i~~y~P~~~v~~~~l~~~~g--~-~-------~~k~--~~Gig~r~~av~~~~---------------- 54 (453)
|.++++++|.++++|+|+.+++++++++..+ . + .+|+ ++||++|+++ .++
T Consensus 8 ~~~~~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~--~~~~~~~~~~~~~~~~~~~ 85 (374)
T 2h84_A 8 YKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLV--RDYTKPENSIKFRHLETIT 85 (374)
T ss_dssp ----CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCS--SCTTSGGGCGGGGGGCCHH
T ss_pred ccCCCCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceee--cCccccccccccCChHHHH
Confidence 4456689999999999999999999998764 2 1 1233 4688887765 344
Q ss_pred -------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHH
Q 012909 55 -------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTA 126 (453)
Q Consensus 55 -------ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~ 126 (453)
++..+|+++|++++|+++|++|++||.|+++|+++ +..|+.+.+|+..||+ +.+++++++. ++|+|++.
T Consensus 86 ~~~~~~~~~~~~la~~Aa~~al~~ag~~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~v~~~aCss~~~ 162 (374)
T 2h84_A 86 DVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTG-IIIPDVNFKLIDLLGL--NKDVERVSLNLMGCLAGLS 162 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeeCC-CCCCcHHHHHHHHcCc--CCCCceEEecCCcCHHHHH
Confidence 67899999999999999999999999999999887 5588999999999999 4568999996 89999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCc----eeccCceeeeccccc
Q 012909 127 ALFNCVNWVESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPI----AFESKLRGSHMSHAY 180 (453)
Q Consensus 127 AL~~A~~~v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l----~~~~~~~~~~~~~~~ 180 (453)
||..|..+|++|.. ++|||+++|.+ |+|+||++.+.. .++ +.+..+
T Consensus 163 al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~~dr~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~--l~~~g~---- 234 (374)
T 2h84_A 163 SLRTAASLAKASPR--NRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYE--VMCSIN---- 234 (374)
T ss_dssp HHHHHHHHHTTCTT--CEEEEEEEECCGGGCCCSSSHHHHHHHHHBCCEEEEEEEESSCCTTCCCCEE--EEEEEE----
T ss_pred HHHHHHHHHHcCCC--CEEEEEEEEecchhhcCCCCHHHHhhhhhhccCcEEEEEecCCCcccCCcee--EEeeee----
Confidence 99999999999965 99999999974 889999876421 011 111111
Q ss_pred cccccCCCC---------CCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCC------CCccCccEEEecCcchHHHH
Q 012909 181 DFYKPNLAS---------EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQ------FSMLDVDYFVFHSPYNKLVQ 245 (453)
Q Consensus 181 df~~p~~~~---------~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~------~~~~d~d~~v~H~p~~km~~ 245 (453)
.+.|.... .+....|+.......+.+..+++.++++ +| ++++|||+| +||++.++++
T Consensus 235 -~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~------ag~~~~~~l~~~did~~-~H~~~~~i~d 306 (374)
T 2h84_A 235 -RSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDK------AKLQTSTAISAKDCEFL-IHTGGKSILM 306 (374)
T ss_dssp -EECSSCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHH------HTTTSCSCCCSSSSEEE-ECCCCHHHHH
T ss_pred -EEeCCCcccceeEEecCcEEEEeCchHHHHHHHHHHHHHHHHHHh------cCCccccCCChhhcCEe-ECCCCHHHHH
Confidence 11121100 0011123333222334444555555443 36 888999999 9999999987
Q ss_pred HHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHH
Q 012909 246 KSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAA 325 (453)
Q Consensus 246 ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~ 325 (453)
. +++.+|++.++ +.. ++...+++|||++||+|++
T Consensus 307 ~------------------------~~~~lgl~~~k---------~~~-------------s~~~~~~~Gnt~sasi~~~ 340 (374)
T 2h84_A 307 N------------------------IENSLGIDPKQ---------TKN-------------TWDVYHAYGNMSSASVIFV 340 (374)
T ss_dssp H------------------------HHHHTTCCGGG---------GHH-------------HHHHHHHHCBCTTHHHHHH
T ss_pred H------------------------HHHHcCCCHHH---------HHH-------------HHHHHHHhCCchhhHHHHH
Confidence 6 33456777763 221 1122379999999999999
Q ss_pred HHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEe
Q 012909 326 FASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQ 361 (453)
Q Consensus 326 L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~ 361 (453)
|.+++++ ++ +|++|++++||+|++|++++++|.
T Consensus 341 L~~~~~~-~~--~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 341 MDHARKS-KS--LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp HHHHHTC-SC--CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHHHHhh-cC--CCCeEEEEEeccchhhhhhhheec
Confidence 9999987 55 899999999999999999999985
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=309.30 Aligned_cols=291 Identities=15% Similarity=0.181 Sum_probs=214.0
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCC---C---------cCee--eEcccceEEeccC---------------CC--
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGV---S---------KGKY--TVGLGQDCMAFCS---------------EV-- 54 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~---~---------~~k~--~~Gig~r~~av~~---------------~~-- 54 (453)
.++++|.+++.|+|+++|+|+++++..+. + .+|+ ++||.+|+++.+. +.
T Consensus 36 ~~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~ 115 (413)
T 1xes_A 36 DGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLD 115 (413)
T ss_dssp CSCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHH
T ss_pred CCCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHH
Confidence 45799999999999999999999987521 1 1244 5799988865322 00
Q ss_pred -------CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCe-eEEeeCCcChhHHH
Q 012909 55 -------EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDI-EGVDSTNACYGGTA 126 (453)
Q Consensus 55 -------ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~-~~~dv~~aC~gg~~ 126 (453)
++..+|+++|+++||+++|++|++||.||++|+++ +..|+.+.+|+..||+ +..+ +++++.++|+|++.
T Consensus 116 ~r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl--~~~~~~~~~v~~aCas~~~ 192 (413)
T 1xes_A 116 ARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTT-PDLPGADFEVAKLLGL--HPSVKRVGVFQHGCFAGGT 192 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESCC-CEESCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCCEEEEEEeCC-CccchHHHHHHHHcCc--CCccchhceecCccHHHHH
Confidence 47899999999999999999999999999999988 5678999999999998 4556 49999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceecc---Cceeeecccc
Q 012909 127 ALFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFES---KLRGSHMSHA 179 (453)
Q Consensus 127 AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~---~~~~~~~~~~ 179 (453)
||..|.++|++|.. ++||||++|.+ |+|+||++.+.-.+.. .+.+..
T Consensus 193 AL~~A~~~i~~G~~--~~vLvvg~E~~s~~~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~---- 266 (413)
T 1xes_A 193 VLRMAKDLAENNRG--ARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTA---- 266 (413)
T ss_dssp HHHHHHHHHHTSTT--CCEEEEEEECTTTTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSCCTTTSCCSEEEEEEE----
T ss_pred HHHHHHHHHHcCCC--CEEEEEEehhhhhhhcCCCccchhhcccceeEecccEEEEEecCCCccccCCceEEEeee----
Confidence 99999999999955 99999999964 8899998764210000 011111
Q ss_pred ccccccCCCCC----------CceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCC-ccCccEEEecCcchHHHHHHH
Q 012909 180 YDFYKPNLASE----------YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFS-MLDVDYFVFHSPYNKLVQKSF 248 (453)
Q Consensus 180 ~df~~p~~~~~----------~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~d~d~~v~H~p~~km~~ka~ 248 (453)
....|..... +..+ ++.......+.+..+++.++ +++|++ ++|+ +|++||++.++++.
T Consensus 267 -~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L------~~~gl~d~~di-~~v~Hq~~~~i~~~-- 335 (413)
T 1xes_A 267 -QTVVPNSEGAIGGKVREVGLTFQL-KGAVPDLISANIENCMVEAF------SQFKISDWNKL-FWVVHPGGRAILDR-- 335 (413)
T ss_dssp -EEECTTCTTTEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHH------GGGTCCCGGGS-EEEECCSCHHHHHH--
T ss_pred -eEEcCCChhhcCcEEecCceEEEe-cccHHHHHHHHHHHHHHHHH------HhcCCCCccce-eEEECCCCHHHHHH--
Confidence 1112221110 1112 33333333344444444433 344676 7788 89999999999877
Q ss_pred HhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHH
Q 012909 249 ARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFAS 328 (453)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~s 328 (453)
+++.++++.++ ++.+ ....+++|||++||+|++|..
T Consensus 336 ----------------------~~~~Lgl~~ek---------~~~s-------------~~~l~~~GNtssAsi~~~L~~ 371 (413)
T 1xes_A 336 ----------------------VEAKLNLDPTK---------LIPT-------------RHVMSEYGNMSSACVHFILDQ 371 (413)
T ss_dssp ----------------------HHHHTTCCTTT---------THHH-------------HHHHHHHCBCGGGHHHHHHHH
T ss_pred ----------------------HHHHcCCChHH---------hHHH-------------HHHHHhcCcCchhhHHHHHHH
Confidence 34456888763 2221 111279999999999999999
Q ss_pred HHhhcCcCCCC--------CEEEEEEecchhhheeeEEEEec
Q 012909 329 LLHEKHSSLEG--------KRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 329 ll~~~~~~~~G--------d~ill~syGsG~~~~~~~l~~~~ 362 (453)
++++ +. ++| ++|+|++||+|++|++++++|.|
T Consensus 372 ~~~~-g~-~~G~~~~G~~~d~vll~~fG~G~t~~~~ll~~~~ 411 (413)
T 1xes_A 372 TRKA-SL-QNGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVP 411 (413)
T ss_dssp HHHH-HH-HTTCSBTTTTCSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHHh-cc-ccCCCCCCCCcceEEEEEecCCcEEeEEEEEecc
Confidence 9987 44 566 99999999999999999999986
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=307.39 Aligned_cols=294 Identities=14% Similarity=0.102 Sum_probs=215.5
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhhCC----Cc--Cee-----eEcccceEEeccCC---------------------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHDGV----SK--GKY-----TVGLGQDCMAFCSE--------------------- 53 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~g~----~~--~k~-----~~Gig~r~~av~~~--------------------- 53 (453)
+|.+.|.+|++++|++.++|+++.++.+. ++ .++ +.||..|++.++..
T Consensus 24 ~m~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (413)
T 3v7i_A 24 AMAAYLCAPAVIHGEHSVETREIVEEVRGRHPHAPWAPRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVRD 103 (413)
T ss_dssp CCCEEEECCEEEECSEEEEHHHHHHHHHHHCSSCSSGGGHHHHHHHHTCSEEEESSCHHHHHSCCCCCCCHHHHHHC---
T ss_pred CCCeEEEeeEeeCCCcccCHHHHHHHHHHhcccchhHHHHHHHHHhCCcCeeeeecCHHHhccccccccccccccccccc
Confidence 56799999999999999999998887531 22 122 47999988876411
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHH
Q 012909 54 ------------------------------VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI 103 (453)
Q Consensus 54 ------------------------------~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~ 103 (453)
.+++.+|+++|+++||+++|++|++||.||++|+++ +..|+.+.+|+..
T Consensus 104 ~~~n~~l~~~~~~~e~i~~rtgi~~R~~~~~~~~~~La~~Aa~~AL~~agi~~~dId~li~~t~t~-~~~P~~a~~v~~~ 182 (413)
T 3v7i_A 104 GFTEQDANRAIAALKAVPASQTVQERTAPAWEAVQAYGERAARGALQIAGLDVADVDCLITSNSTT-PALPGLDVALANR 182 (413)
T ss_dssp ---CHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEECCSS-CCSSCHHHHHHHH
T ss_pred ccchhhhhhhcCcccceecCCCHHHhCcccccCHHHHHHHHHHHHHHHhCcCHHHCCEEEEEccCC-CCcCHHHHHHHHH
Confidence 124678999999999999999999999999999998 4689999999999
Q ss_pred hcccCCCCeeEEee-CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-----------------------ceeeee
Q 012909 104 FEKYGNTDIEGVDS-TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-----------------------AVAMLI 159 (453)
Q Consensus 104 Lgl~G~~~~~~~dv-~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-----------------------AvA~Ll 159 (453)
||+ ++++.++++ .++|+||+.||..|.++|++|. .++||||++|.+ |+|+||
T Consensus 183 LGl--~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~--~~~vLvvg~E~~S~~~~~~d~~~~~lv~~~LFGDGAaAvvl 258 (413)
T 3v7i_A 183 LPL--RGDTMLLPATQWACVAGTRSLALAADLVAADP--DRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVV 258 (413)
T ss_dssp TTC--CTTCEEEEESSCGGGHHHHHHHHHHHHHHHCT--TCEEEEEEEECGGGGCCSSCCSTTHHHHHHHBCCEEEEEEE
T ss_pred hCC--CCCceEEEeeCCccHHHHHHHHHHHHHHhcCC--CCEEEEEEEeccccccCccccchhhhhcceeeccccEEEEE
Confidence 999 566999999 8999999999999999999995 499999999987 899999
Q ss_pred cCCCC--ceeccCceeeeccccccc-----cccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCcc
Q 012909 160 GPDAP--IAFESKLRGSHMSHAYDF-----YKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232 (453)
Q Consensus 160 ~~~~~--l~~~~~~~~~~~~~~~df-----~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d 232 (453)
++++. ..+. +.+.......+. |..........++|+ .. .+...+..+.+.++++.....+++++ ||
T Consensus 259 ~~~~~~~~~~~--l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~-v~-~~v~~~~~~i~~~L~~~~~~~~~gl~---id 331 (413)
T 3v7i_A 259 TGRPRPESVLR--LDAAWHHTLPGTRDLHRLETRADGTHFVMDRR-GP-RAVQETVTAMWEWLRVRYEDDPSSWH---PD 331 (413)
T ss_dssp ESSCCTTEEEE--EEEEEEEECTTCTTSEEEEEETTEEEEEECTT-HH-HHHHHHHHHHHHHHHHHTSSSCTTCC---CC
T ss_pred EecCCCCCCEE--EEccccEEeCCCccccCccccCCceEEEECcH-HH-HHHHHHHHHHHHHHhhccccccCCCc---ee
Confidence 87752 1111 111211111110 100000012345665 21 22333444444444311000044564 99
Q ss_pred EEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCC--CCccccccchhHHHHHHHHHHHHhhhhcCCCccc
Q 012909 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYST--LSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLI 310 (453)
Q Consensus 233 ~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~--l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~ 310 (453)
+|++||++.++++. +++.+| +++++ +.+|+..
T Consensus 332 ~~v~Hq~~~~il~~------------------------v~~~Lg~~l~~ek----------------------~~~s~~~ 365 (413)
T 3v7i_A 332 VLLAHPGGTRVLEY------------------------MEQTMPDEWPSGL----------------------LSYSRDS 365 (413)
T ss_dssp EEEEECSSHHHHHH------------------------HHHHSCSSCCSCS----------------------THHHHHH
T ss_pred EEEECCCChHHHHH------------------------HHHHhCCCCCHHH----------------------hhccceE
Confidence 99999999999877 445568 88873 2222333
Q ss_pred ccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEE
Q 012909 311 PKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQL 360 (453)
Q Consensus 311 ~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~ 360 (453)
.+ +|||++||+|++|..++ + +++++||+++|++||+|++|++.+++|
T Consensus 366 l~-~GNtssAsi~~~L~~~~-~-~~~~~Gd~vll~~fG~Glt~~~~ll~w 412 (413)
T 3v7i_A 366 YT-SGNRGGAAVFDILRRAH-D-AGQKTGSRAVLYAAAPGLTATALEGEW 412 (413)
T ss_dssp HT-TCBCGGGHHHHHHHHHH-H-HCCCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred ec-eeChHHHHHHHHHHHHH-h-CCCCCCCEEEEEEECHHHhHhhhheEe
Confidence 48 99999999999999999 4 568899999999999999999999998
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=324.62 Aligned_cols=296 Identities=18% Similarity=0.189 Sum_probs=215.2
Q ss_pred CceeEEeEEEEEcCCceechhHHhhh---hCCCcCe---------e--eEcccceEEeccCCCC----------------
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVH---DGVSKGK---------Y--TVGLGQDCMAFCSEVE---------------- 55 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~---~g~~~~k---------~--~~Gig~r~~av~~~~e---------------- 55 (453)
.++++|.++|+|+|+.+++|+|+++. .+.++.| + ++||.+|++. .+++
T Consensus 601 ~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~--~~~~~~~~~~~~~~~~~~~~ 678 (979)
T 3tsy_A 601 KGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIH--LTEEMLEEHPNIGAYMAPSL 678 (979)
T ss_dssp CSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECS--CCHHHHHHCHHHHSSSSCCH
T ss_pred cCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEe--cChhhhhcCcccccccCCCH
Confidence 35799999999999999999999999 6777766 4 4688877754 4443
Q ss_pred ---------CHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHH
Q 012909 56 ---------DVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126 (453)
Q Consensus 56 ---------d~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~ 126 (453)
+..+|+++|+++||+++|++|++||.||++|++ ++..|+.++.|++.||+. +..++++++.+||+|++.
T Consensus 679 ~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId~ii~~t~~-~~~~p~~a~~v~~~lGl~-~~~~~~~~v~~aCsg~~~ 756 (979)
T 3tsy_A 679 NIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTS-GVEMPGADYKLANLLGLE-PSVRRVMLYHQGCYAGGT 756 (979)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESS-CCCSSCHHHHHHHHHTCC-TTCEEEEEESCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHcCCC-cccEEEeeeccccHhHHH
Confidence 378899999999999999999999999999955 466899999999999981 123689999999999999
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCCCceeccCceeeeccccccc
Q 012909 127 ALFNCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDF 182 (453)
Q Consensus 127 AL~~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df 182 (453)
||..|.++|++|.. ++||||++|.+ |+|+||++.+...+..............+
T Consensus 757 Al~~A~~~i~sG~~--~~vLvvg~e~~~~~~~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~ 834 (979)
T 3tsy_A 757 VLRTAKDLAENNAG--ARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFI 834 (979)
T ss_dssp HHHHHHHHHHTSTT--CEEEEEEEECTTTTCCCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCCC--CEEEEEEEEecchheeCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEe
Confidence 99999999999965 99999999973 89999987643111100000000000111
Q ss_pred cccCCC-------CCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhh
Q 012909 183 YKPNLA-------SEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFND 255 (453)
Q Consensus 183 ~~p~~~-------~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~ 255 (453)
..+... ..+..+.++.........+..+. .+.+ +++|++++|||+|++||++.+++++..
T Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~al---~~agl~~~did~~~~Hq~~~~i~~~~~------- 901 (979)
T 3tsy_A 835 PNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCL---TQAF---DPLGISDWNSLFWIAHPGGPAILDAVE------- 901 (979)
T ss_dssp TTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH---HHHH---GGGTCCCGGGSEEEECCSCHHHHHHHH-------
T ss_pred cCchhheEEEEecCceEEEEchHHHHHHHHHHHHHH---HHHH---hhcCCCCcccceEEECCCChHHHHHHH-------
Confidence 111100 01112334444222333333333 3333 456799999999999999999988743
Q ss_pred hhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCc
Q 012909 256 FLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHS 335 (453)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~ 335 (453)
+.++++.+ |++.+ +...+++|||++||+|++|.++++.
T Consensus 902 -----------------~~lgl~~~---------k~~~~-------------~~~l~~~GNtssasi~~~L~~~~~~--- 939 (979)
T 3tsy_A 902 -----------------AKLNLDKK---------KLEAT-------------RHVLSEYGNMSSACVLFILDEMRKK--- 939 (979)
T ss_dssp -----------------HHHTCCTT---------TTHHH-------------HHHHHHHCBCTTHHHHHHHHHHHHH---
T ss_pred -----------------HHcCCChH---------HHHHH-------------HHHHHHcCCcchhhHHHHHHHHHhh---
Confidence 34577776 22222 1123799999999999999998875
Q ss_pred CCCCCEE---------EEEEecchhhheeeEEEEec
Q 012909 336 SLEGKRV---------IMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 336 ~~~Gd~i---------ll~syGsG~~~~~~~l~~~~ 362 (453)
+++|++| +|++||+|++|++++++|.+
T Consensus 940 ~~~G~~v~~g~~~~~~ll~~~G~G~t~~~~~l~~~~ 975 (979)
T 3tsy_A 940 SLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 975 (979)
T ss_dssp HHHTTCSBTTTTCSEEEEEEECGGGEEEEEEEECCB
T ss_pred hcccccccCCCCcceeEEEEeCCchHHHHHHHHhcc
Confidence 3456555 99999999999999999976
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=186.32 Aligned_cols=273 Identities=11% Similarity=0.044 Sum_probs=174.5
Q ss_pred CCCc-eeEEeEEEEEcCCceechhHHhhhhCCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcC
Q 012909 4 WHPK-NVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIG 80 (453)
Q Consensus 4 ~~~~-~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id 80 (453)
|.+. .+.|.+.+...+ ..|.+.-.+..-+++. ...|++. +++...+|+++|+++||+++|++|+|||
T Consensus 9 ~~f~~~~~i~~~~~~~g-----~~E~~gpl~~~fd~~~~d~~fG~~t-----~e~a~sdLa~~Aa~~AL~~AGi~~~DID 78 (347)
T 3lma_A 9 WEFENPLFVNSSGTAVG-----PKEKEGPLGHLFDKSYDEMHCNQKN-----WEMAERKLMEDAVQSALSKQNLKKEDID 78 (347)
T ss_dssp EECCSCCEEEEEEEEEC-----HHHHHSTTGGGSSEECSSTTTTSSS-----HHHHHHHHHHHHHHHHHHTTTCCGGGCS
T ss_pred EEeCCCCEEEEEeeeeC-----chhhcCCchhhchhhhcccccCCcC-----ccHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 4443 478888887776 4555444444444441 2445432 3567789999999999999999999999
Q ss_pred EEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------
Q 012909 81 RLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------- 153 (453)
Q Consensus 81 ~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------- 153 (453)
.||++|.++ +. ..++++++.||+ ++||+.++|+|++.||.+|..+|++|.+ ++||||++|.+
T Consensus 79 ~II~gt~t~-q~--~~A~~va~~Lgi------pafdV~~ACsg~~~AL~~Aa~~I~sG~~--~~VLVVGaE~~S~aerq~ 147 (347)
T 3lma_A 79 IFLAGDLLN-QN--VTANYVARHLKI------PFLCLFGACSTSMESIAISSALIDGGFA--KRALAATSSHNATAERQF 147 (347)
T ss_dssp EEEEEESSS-SS--TTHHHHHHHHCC------CEEEBCCSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTTCCC
T ss_pred EEEEEeCCC-ch--hHHHHHHHHhCC------CEEEecChhHHHHHHHHHHHHHHhcCCC--CEEEEEEeccccchhhhc
Confidence 999999988 32 378999999864 4999999999999999999999999976 99999999976
Q ss_pred --------------------ceeeeecCCCCceeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHH
Q 012909 154 --------------------AVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKY 213 (453)
Q Consensus 154 --------------------AvA~Ll~~~~~l~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~ 213 (453)
|+|+||++.+. .+.+.+.-...+.||=. .+ |...|.- .- ..+++.
T Consensus 148 r~p~e~g~q~p~ta~~t~dGAGA~VL~~~g~---~p~I~~~t~Gkvvd~g~----~d-~~nmg~a---ma----PaA~~t 212 (347)
T 3lma_A 148 RYPTEYGGQKPGTATSTVTGSGAVVLSQQPG---GIKITSATVGRVIDLGI----TD-SQDMGSA---MA----PAAADT 212 (347)
T ss_dssp ----------------CCCEEEEEEEESSCC---SEEEEEEECCCCBCCSC----CC-TTCHHHH---HH----HHHHHH
T ss_pred cCcchhcccCCchhcEEccceeEEEEEecCC---CCceeeeeeeeeeccCC----CC-CCCcccc---ch----HHHHHH
Confidence 88999987642 11122222223333211 11 1111210 01 112222
Q ss_pred HHHHHhhhhcCCCCccCccEEE---ecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHH
Q 012909 214 FCQKFEKLEGRQFSMLDVDYFV---FHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~d~~v---~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k 290 (453)
+.+.+ ++.+++++|+|+++ +||.+.+|+++.++ .+|++.++.|.|=-+..
T Consensus 213 i~~~l---~d~g~~~~d~D~ivtgdL~q~g~~il~~l~~------------------------~~g~~~~~~~~dcg~~i 265 (347)
T 3lma_A 213 IKQHL---EDLGRTPDDYDLILTGDLSGVGSPILKDLLK------------------------EEGINVGTKHNDCGLMI 265 (347)
T ss_dssp HHHHH---HHHTCCGGGCSEEEEESCHHHHHHHHHHHHH------------------------HTTCCCGGGEEEGGGTS
T ss_pred HHHHH---HHhCCCHHHcCEEecCChHHHHHHHHHHHHH------------------------HcCCChhHCccccceEE
Confidence 22222 33469999999999 88999998877443 34566654444311110
Q ss_pred HHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhhe
Q 012909 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTAT 354 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~ 354 (453)
+.+... -.-|-.|.+.....|...|-+.=+....+||+++++|++++-.
T Consensus 266 -------------y~~~~~--~~~ggsg~~csa~v~~~~~~~~~~~g~~~ril~~~tGalls~~ 314 (347)
T 3lma_A 266 -------------YTPDQQ--VFAGGSGCACSAVVTFAHIFKEIEAGRLNRVLVVATGALLSPT 314 (347)
T ss_dssp -------------SCC-----------CCCCHHHHHHHTHHHHHHTTSCSEEEEEEEEECCCHH
T ss_pred -------------ecCCCc--ccCCCCccccHHHHHHHHHHHHHhcCcccEEEEEecccccCcc
Confidence 000000 1347777788888888766542111356899999999998743
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=145.34 Aligned_cols=97 Identities=7% Similarity=0.096 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.+++..+|+.+|++++|+++|++|++||.|++++.++....+..+..++..||+ +.+++++++..+|+|++.||..|.
T Consensus 25 ~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g~~~~~~~~~~~a~~~~~~lGl--~~~~p~~~v~~~Css~~~al~~A~ 102 (395)
T 4e1l_A 25 KNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLGQNVARQIAINAGI--PNSVPSYTVNKLCGSGLKSVQLAA 102 (395)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECCCCSSTTCCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCcchHHHHHHHHcCC--CCCceEEEccccchHHHHHHHHHH
Confidence 468899999999999999999999999999999988877778899999999998 568999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|++|.. +.|||+++|.+
T Consensus 103 ~~I~~G~~--~~vlv~g~e~~ 121 (395)
T 4e1l_A 103 QSITSGEN--DVVIAGGTENM 121 (395)
T ss_dssp HHHHTTSC--SEEEEEEEEET
T ss_pred HHHhCCCC--CEEEEEEEecc
Confidence 99999976 99999999977
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-14 Score=142.23 Aligned_cols=97 Identities=7% Similarity=0.118 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.++++.+|+.+|++++|+++|++|++||.|++++.++....+..+..++..+|+ +.+++++++..+|+|++.||..|.
T Consensus 25 ~~~~~~~L~~~A~~~Al~~agl~~~~Id~v~~g~~~~~~~~~~~a~~i~~~lGl--~~~~p~~~v~~aCss~~~al~~A~ 102 (394)
T 3ss6_A 25 KNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTDEANTARTAALAAGF--PDTVTGYTIQRQCSSGMQAIMSAA 102 (394)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSSCCGGGCSHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHhHCCEEEEEEccCCCccchHHHHHHHHcCC--CCCceEEEecCcchHHHHHHHHHH
Confidence 578899999999999999999999999999999988877678899999999998 558999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+|++|.+ +.|||+++|.+
T Consensus 103 ~~I~~G~~--~~vlv~G~e~~ 121 (394)
T 3ss6_A 103 MQIQLGVS--EVVVAGGVEAM 121 (394)
T ss_dssp HHHHHTSC--SEEEEEEEEEC
T ss_pred HHHhCCCC--CEEEEEEEhhc
Confidence 99999976 99999999987
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=139.91 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 52 SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 52 ~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.+++++.+|+++|++++|+++|++|++||.|++++.++....+..+..++..||+ +.+++++++..+|+|++.||..|
T Consensus 26 ~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g~~~~~~~~~~~a~~v~~~lGl--~~~~p~~~v~~aCss~~~al~~A 103 (396)
T 4dd5_A 26 FKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGI--PVEKPAMTINIVCGSGLRSVSMA 103 (396)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCCCCCchHHHHHHHHcCC--CCCceEEEeccccHHHHHHHHHH
Confidence 4578999999999999999999999999999999999887788999999999998 56899999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..+|++|.. ++|||+++|.+
T Consensus 104 ~~~I~~G~~--~~vLv~g~e~~ 123 (396)
T 4dd5_A 104 SQLIALGDA--DIMLVGGAENM 123 (396)
T ss_dssp HHHHHHTSC--SEEEEEEEEES
T ss_pred HHHHhcCCC--CEEEEEEEecc
Confidence 999999966 99999999987
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-12 Score=131.13 Aligned_cols=138 Identities=10% Similarity=0.062 Sum_probs=99.8
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC---------cCeeeEccc-------ceEEecc----CCCCCHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLG-------QDCMAFC----SEVEDVISMSLTV 64 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---------~~k~~~Gig-------~r~~av~----~~~ed~~~la~~A 64 (453)
..|.|.+++.++|.- .+.+++.+.. |.+ ...+...++ .+.+ +. ..-.....|+++|
T Consensus 4 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~-i~~~~~~~~d~~~~l~l~A 81 (413)
T 3o04_A 4 RRVVVTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKY-LEKKEARKMDRFTHYAIAS 81 (413)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGT-SCHHHHTTSCHHHHHHHHH
T ss_pred CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhc-cCHHHHhhCCHHHHHHHHH
Confidence 469999999999987 5777765543 221 111100000 0000 00 0112346799999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEcccC-----------------CCCCc---------cHHHHHHHHhcccCCCCeeE
Q 012909 65 VTSLLEKYKIDPTQIG----RLEVGSETV-----------------IDKSK---------SIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 65 a~~aL~~agi~~~~Id----~li~~t~s~-----------------~~~~~---------~~a~~l~~~Lgl~G~~~~~~ 114 (453)
++++|+++|+++++|| .|+++|.++ ....| ..+.+|+..||+ +. ++
T Consensus 82 a~~AL~dAGl~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~g-p~ 157 (413)
T 3o04_A 82 AEMAVQDSGLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGA---KG-IN 157 (413)
T ss_dssp HHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTC---CS-CE
T ss_pred HHHHHHHcCCChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCC---CC-cc
Confidence 9999999999999999 999998642 11222 237899999998 32 78
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+++..+|+|++.||..|..+|++|.+ +.|||+++|.
T Consensus 158 ~~v~~aCss~~~Al~~A~~~I~~G~~--d~~lvgG~e~ 193 (413)
T 3o04_A 158 STTVTACATATNSIGDAFKVIERGDA--DAMITGGAEA 193 (413)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred eeecchhHHHHHHHHHHHHHHHcCCC--CEEEEeEEcc
Confidence 89999999999999999999999977 9999999997
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-12 Score=131.68 Aligned_cols=139 Identities=13% Similarity=0.124 Sum_probs=98.5
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC---------cCeeeEccc------ceEEeccC----CCCCHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLG------QDCMAFCS----EVEDVISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---------~~k~~~Gig------~r~~av~~----~~ed~~~la~~Aa 65 (453)
+.|-|.+++..+|.-. +.+++.+.. |.+ +..+...++ .+.+.+.+ .-.....|+++|+
T Consensus 3 ~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~fd~~~~~i~~~~~~~~d~~~~l~l~aa 81 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACA 81 (424)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCceeeCCCcccccCCcceeEEeccCHhhcCCCHHHHHhcCHHHHHHHHHH
Confidence 3699999999999875 777766553 322 111100000 00000000 0122468999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEcccCCC---------------------------CCccH-HH----HHHHHhcccCC
Q 012909 66 TSLLEKYKIDPTQIG----RLEVGSETVID---------------------------KSKSI-KT----FLMQIFEKYGN 109 (453)
Q Consensus 66 ~~aL~~agi~~~~Id----~li~~t~s~~~---------------------------~~~~~-a~----~l~~~Lgl~G~ 109 (453)
+++|+++|+++++|| .|+++|.++.. ..++. +. +|+..||+
T Consensus 82 ~~AL~dAG~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl--- 158 (424)
T 1tqy_A 82 REAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA--- 158 (424)
T ss_dssp HHHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC---
T ss_pred HHHHHHCCCCchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC---
Confidence 999999999999999 69999876532 11222 34 99999998
Q ss_pred CCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 110 ~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
. -+++.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 159 ~-gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 198 (424)
T 1tqy_A 159 E-GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADT 198 (424)
T ss_dssp C-SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEEC
T ss_pred C-CceEeecCcccHHHHHHHHHHHHHHCCCC--CEEEEeeecc
Confidence 3 27899999999999999999999999976 9999999996
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-12 Score=128.66 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+++..+|+++|++++|+++ |++|++||.|++++.++... .+..+..++..+|+ +..++++++..+|+|++.||..|
T Consensus 24 ~~~~~~L~~~a~~~Al~~a~gi~~~~Id~v~~g~~~~~~~~~~~~a~~~~~~~Gl--~~~~p~~~v~~aCss~l~Al~~A 101 (387)
T 3goa_A 24 NVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEI--PHSVPAVTVNRLCGSSMQALHDA 101 (387)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTC--CTTSCCEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHcCEEEEEcccCCcccccHHHHHHHHHcCC--CCCCcEeEecCcchHHHHHHHHH
Confidence 6789999999999999999 99999999999999887765 67899999999998 56899999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.|||+++|.+
T Consensus 102 ~~~I~sG~~--d~vLv~G~e~~ 121 (387)
T 3goa_A 102 ARMIMTGDA--QVCLVGGVEHM 121 (387)
T ss_dssp HHHHHTTSC--SEEEEEEEECT
T ss_pred HHHHhCCCC--CEEEEEEEecC
Confidence 999999976 99999999965
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-11 Score=124.56 Aligned_cols=142 Identities=12% Similarity=0.000 Sum_probs=101.0
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-EcccceEEecc---------C-----CCCCHHHHHH
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMAFC---------S-----EVEDVISMSL 62 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~av~---------~-----~~ed~~~la~ 62 (453)
.+...|-|.++++.+|.- .+.+++.+.. |.+. .++. .++..+.-... + .-.....|++
T Consensus 20 m~m~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l 98 (430)
T 1ox0_A 20 MKLNRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYAL 98 (430)
T ss_dssp CCCCCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHH
T ss_pred ccCCCEEEEEEEEECCCc-CCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHH
Confidence 334569999999999987 5666665543 3211 0110 01111111100 0 0122468999
Q ss_pred HHHHHHHHHcCCCcCCcC----EEEEEcccCCC---------------------CCc-----cHHHHHHHHhcccCCCCe
Q 012909 63 TVVTSLLEKYKIDPTQIG----RLEVGSETVID---------------------KSK-----SIKTFLMQIFEKYGNTDI 112 (453)
Q Consensus 63 ~Aa~~aL~~agi~~~~Id----~li~~t~s~~~---------------------~~~-----~~a~~l~~~Lgl~G~~~~ 112 (453)
+|++++|+++|+++++|| .|++++.++.. ..+ ..+.+|+..||+ . -
T Consensus 99 ~aa~~AL~dAG~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl---~-G 174 (430)
T 1ox0_A 99 YAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGA---N-G 174 (430)
T ss_dssp HHHHHHHHHTTCCTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-S
T ss_pred HHHHHHHHHcCCChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcC---C-C
Confidence 999999999999999999 58888876531 011 478899999998 3 2
Q ss_pred eEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 113 EGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 113 ~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+++++..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 175 p~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 212 (430)
T 1ox0_A 175 VCKSINTACSSSNDAIGDAFRSIKFGFQ--DVMLVGGTEA 212 (430)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred ceEeecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 7899999999999999999999999976 9999999996
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-11 Score=120.46 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=99.7
Q ss_pred CCCCCCceeEEeEEEEEcCCceechhHHhhhh--CCCc----Cee-eEcccceEEeccC-C-------------CCCHHH
Q 012909 1 MTSWHPKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKY-TVGLGQDCMAFCS-E-------------VEDVIS 59 (453)
Q Consensus 1 ~~~~~~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~-~~Gig~r~~av~~-~-------------~ed~~~ 59 (453)
|+....+.|.|.+++..+|.- .+.+++.+.. |.+. .++ ..++..+.....+ . -.....
T Consensus 1 m~~~~m~~v~I~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~ 79 (416)
T 1e5m_A 1 MANLEKKRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCH 79 (416)
T ss_dssp -----CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHH
T ss_pred CCCCCCCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHH
Confidence 444333469999999999987 3666655442 2211 001 0011111111000 0 012358
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC-----------------CC---------ccHHHHHHHHhcccCC
Q 012909 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID-----------------KS---------KSIKTFLMQIFEKYGN 109 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~-----------------~~---------~~~a~~l~~~Lgl~G~ 109 (453)
|+++|++++|+++|+++++|| .|++++.++.. .. ..++.+|+..||+
T Consensus 80 l~l~aa~~Al~dAg~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl--- 156 (416)
T 1e5m_A 80 FAVCASQQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGA--- 156 (416)
T ss_dssp HHHHHHHHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCC---
Confidence 999999999999999999999 79999876531 11 2478899999998
Q ss_pred CCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 110 TDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 110 ~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+ .+++.+..+|+|++.||..|..+|++|.. +.|||+++|.
T Consensus 157 ~-gp~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~ 196 (416)
T 1e5m_A 157 K-GPNNCTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEA 196 (416)
T ss_dssp C-SCEECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred C-CceeCccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 2 36899999999999999999999999976 9999999996
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-11 Score=122.24 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=100.1
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-EcccceEEe----c-----cCC----C-CCHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA----F-----CSE----V-EDVISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~a----v-----~~~----~-ed~~~la~~Aa 65 (453)
..|-|.++++.+|.- .+.+++.+.. |.+. .++. .++..+... | .++ . .....|+++|+
T Consensus 28 ~~vaI~G~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 106 (437)
T 2gqd_A 28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA 106 (437)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred CCEEEEEeeEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence 459999999999987 4666655442 2211 0010 000000000 0 011 1 22468999999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEcccCCC-----------------C---------CccHHHHHHHHhcccCCCCeeEE
Q 012909 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------K---------SKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 66 ~~aL~~agi~~~~Id----~li~~t~s~~~-----------------~---------~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
+++|+++|+++++|| .|++++.++.. . ...++.+|+..||+ .. +++
T Consensus 107 ~~AL~dAGl~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~g-p~~ 182 (437)
T 2gqd_A 107 REAVKDAQLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGA---KG-PNG 182 (437)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---CS-SEE
T ss_pred HHHHHHcCCCccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCC---CC-ceE
Confidence 999999999999999 99999876531 1 12578899999998 33 688
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 183 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 217 (437)
T 2gqd_A 183 ATVTACATGTNSIGEAFKIVQRGDA--DAMITGGTEA 217 (437)
T ss_dssp CBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred EecCCccHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 9999999999999999999999976 9999999996
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-13 Score=136.59 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=93.8
Q ss_pred cCCceechhHHhhhhCC---CcCee----eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCC
Q 012909 18 FPPTCVLQEALEVHDGV---SKGKY----TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVI 90 (453)
Q Consensus 18 ~P~~~v~~~~l~~~~g~---~~~k~----~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~ 90 (453)
-|++.++|++|++..+. +..++ ++.+|.++. ....+++..+|+++|++++|+++|+++++||.|++++.++.
T Consensus 10 ~P~~~~~n~~~~~~~~~~~~~~v~Ivg~~rt~~g~~~~-~~~~~~~~~~L~~~Aa~~AL~dAgl~~~~id~v~~g~~~~~ 88 (418)
T 2iik_A 10 GVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGR-GGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQP 88 (418)
T ss_dssp -----------------CCTTCEEEEEEEECCCEETTT-STTTTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECSSSB
T ss_pred CCCccccHHHHHHHhhhccCCCeEEEeeeecCceecCC-CCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCc
Confidence 49999999999988663 32222 334443211 12467899999999999999999999999999999998876
Q ss_pred CCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 91 DKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 91 ~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...+..+..++..||+ +.+.+++++..+|+|++.||..|..+|++|.. +.|||+++|.+
T Consensus 89 ~~~~~~a~~~a~~lGl--~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~--d~vLv~G~e~~ 147 (418)
T 2iik_A 89 GAGAIMARIAQFLSDI--PETVPLSTVNRQCSSGLQAVASIAGGIRNGSY--DIGMACGVESM 147 (418)
T ss_dssp GGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEET
T ss_pred cccccHHHHHHHHcCC--CCCceEEEeCCCCHHHHHHHHHHHHHHHCCCC--CEEEEeccccC
Confidence 6556778888899998 55789999999999999999999999999976 99999999987
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-12 Score=130.05 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFN 130 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~ 130 (453)
.+++..+|+++|++++|++ +|++|++||.|++++.++... .+.++..++..+|+ +..+++++++.+|+|++.||..
T Consensus 28 ~~~~~~~L~~~A~~~AL~~~AGl~~~dId~vi~g~~~~~~~~~~~~a~~va~~lGl--p~~~pa~~v~~~Css~~~Al~~ 105 (407)
T 3svk_A 28 TEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVGDQGGDIARTAVLAAGL--PETTGGVQLNRFCASGLEAVNT 105 (407)
T ss_dssp TTSCHHHHHHHHHHHHHHHSTTCCGGGEEEEEEECC--------CHHHHHHHHTTC--CTTCEEEEEC---CBSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhcCcCHHHCCEEEEEecCccccccCcHHHHHHHHcCC--CCCCceEEecCcChhHHHHHHH
Confidence 4678999999999999999 999999999999999877643 57889999999998 6789999999999999999999
Q ss_pred HHHHHHhCCCCCCeEEEEEeecc
Q 012909 131 CVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 131 A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|..+|++|.. +.|||+++|.+
T Consensus 106 A~~~I~sG~~--d~vLv~G~e~~ 126 (407)
T 3svk_A 106 AAQKVRSGWD--DLVLAGGVESM 126 (407)
T ss_dssp HHHHHHHTSC--CEEEEEEEECC
T ss_pred HHHHHHcCCC--CEEEEEEEccc
Confidence 9999999976 99999999976
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=118.31 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=98.5
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-EcccceEE---ecc----------CCCCCHHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCM---AFC----------SEVEDVISMSLTVVT 66 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~---av~----------~~~ed~~~la~~Aa~ 66 (453)
+.|-|.++++.+|.-. +.+++.+.. |.+. .++. .++..+.- .|. ..-.....|+++|++
T Consensus 2 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~l~~~aa~ 80 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQ 80 (408)
T ss_dssp CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEEEeEEECCCCC-CHHHHHHHHHcCCCeeeeccccCcccCccceEEEEccChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 3689999999999875 667665442 2211 0010 00000000 010 011235789999999
Q ss_pred HHHHHcCCCcCCcCE----EEEEcccCCCC-------------------------Cc-cHHHHHHHHhcccCCCCeeEEe
Q 012909 67 SLLEKYKIDPTQIGR----LEVGSETVIDK-------------------------SK-SIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 67 ~aL~~agi~~~~Id~----li~~t~s~~~~-------------------------~~-~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
++|+++|+++++||. +++++.++... .+ ..+.+|+..||+ +. ++++
T Consensus 81 ~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~g-p~~~ 156 (408)
T 1j3n_A 81 LALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGF---TG-PSST 156 (408)
T ss_dssp HHHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---CS-CBCC
T ss_pred HHHHHcCCCccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCC---CC-ceeC
Confidence 999999999999984 77887665321 11 468899999998 32 6889
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 157 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 190 (408)
T 1j3n_A 157 VVTACATGADALGSALRMIQLGEA--DLVLAGGTEA 190 (408)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred ccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 999999999999999999999976 9999999996
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.3e-10 Score=113.52 Aligned_cols=141 Identities=10% Similarity=0.061 Sum_probs=100.0
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-EcccceEEe-ccC--C-----------CCCHHHHHHHH
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMA-FCS--E-----------VEDVISMSLTV 64 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~a-v~~--~-----------~ed~~~la~~A 64 (453)
...|-|.+++..+|.-. +.+++.+.. |.+. .++. .+...+.-. +.. . -.....|+++|
T Consensus 17 ~~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 95 (427)
T 3ho9_A 17 KRRVVVTGLGMLSPVGN-TVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVA 95 (427)
T ss_dssp CCCEEEEEEEEEBTTBS-SHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHHHH
T ss_pred CCCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHHHH
Confidence 45799999999999864 677665553 3211 0110 001000000 000 0 11246799999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEcccCC--------------------------CCCccHHHHHHHHhcccCCCCeeE
Q 012909 65 VTSLLEKYKIDPTQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 65 a~~aL~~agi~~~~Id----~li~~t~s~~--------------------------~~~~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
++++|+++|+++++|| .++++|.++. ......+.+|+..||+ + -++
T Consensus 96 a~~AL~dAGl~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl---~-Gp~ 171 (427)
T 3ho9_A 96 GVQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGL---R-GPS 171 (427)
T ss_dssp HHHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-SCE
T ss_pred HHHHHHHCCCCcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCC---C-CCe
Confidence 9999999999999999 5888886421 1123467899999998 2 268
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+..||++++.||..|..+|++|.. +.|||+++|.+
T Consensus 172 ~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~ 208 (427)
T 3ho9_A 172 ISIATAATSGVHNIGHAARIIAYGDA--DVMVAGGAEKA 208 (427)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred ecccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 89999999999999999999999976 99999999964
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-10 Score=119.46 Aligned_cols=96 Identities=8% Similarity=0.066 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+++..+|+++|++++|+++|+++++||.+++++..+....+..+..++..||+ +...+++.+..+|++++.||..|..
T Consensus 24 ~~~~~~L~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSgl~Al~~A~~ 101 (392)
T 2vu1_A 24 NTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLCGSGLRAVALGMQ 101 (392)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCcHHHHHHHHHcCC--CCCceEEEecccchHHHHHHHHHHH
Confidence 57899999999999999999999999999999887765567899999999998 4448899999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
.|++|.. +.|||+++|.+
T Consensus 102 ~I~~G~~--d~vlvgG~e~~ 119 (392)
T 2vu1_A 102 QIATGDA--SIIVAGGMESM 119 (392)
T ss_dssp HHHTTSC--SCEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEecc
Confidence 9999966 99999999976
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-09 Score=112.56 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=99.0
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCc---------Cee--eE-cccce-----EEe----cc----CCCCCHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK---------GKY--TV-GLGQD-----CMA----FC----SEVEDVIS 59 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~---------~k~--~~-Gig~r-----~~a----v~----~~~ed~~~ 59 (453)
..|-|.++++.+|.- .+.+++.+.. |.+. ..+ .. |.-.. .+- +. ..-.....
T Consensus 21 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 21 RRVVITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 469999999999976 5777765543 2210 011 00 10000 000 00 00123468
Q ss_pred HHHHHHHHHHHHcCCCc-CCcC----EEEEEcccCCC--------------------------CCccHHHHHHHHhcccC
Q 012909 60 MSLTVVTSLLEKYKIDP-TQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKYG 108 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~-~~Id----~li~~t~s~~~--------------------------~~~~~a~~l~~~Lgl~G 108 (453)
|+++|++++|+++|+++ ++|| .|++++.++.. .....+.+|+..||+
T Consensus 100 l~l~aa~~AL~dAGl~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl-- 177 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKL-- 177 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCCCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhCC--
Confidence 99999999999999998 8887 58888765431 112478899999998
Q ss_pred CCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 109 NTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 109 ~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
.. +++.+..+|++++.||..|..+|++|.. +.|||+++|.
T Consensus 178 -~g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 217 (438)
T 2iwz_A 178 -KG-PNHAVSTACTTGAHAVGDSFRFIAHGDA--DVMVAGGTDS 217 (438)
T ss_dssp -CS-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEEC
T ss_pred -CC-ceeeecCchhHHHHHHHHHHHHHHcCCC--CEEEEEeeeh
Confidence 33 7899999999999999999999999976 9999999995
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-10 Score=115.70 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHcCCCcCCc-C----EEEEEcccCC--------------------------CCCccHHHHHHHHh
Q 012909 56 DVISMSLTVVTSLLEKYKIDPTQI-G----RLEVGSETVI--------------------------DKSKSIKTFLMQIF 104 (453)
Q Consensus 56 d~~~la~~Aa~~aL~~agi~~~~I-d----~li~~t~s~~--------------------------~~~~~~a~~l~~~L 104 (453)
....|+++|+++||+++|+++++| | .|+++|..+. ...+..+..|+..|
T Consensus 101 ~~~~L~l~Aa~~AL~dAGl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 180 (451)
T 4ddo_A 101 RFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKH 180 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHHh
Confidence 357899999999999999999999 7 6888876321 12345678999999
Q ss_pred cccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 105 EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 105 gl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
|+ .. +++++..+|+|++.||..|..+|++|.+ +.|||+++|.
T Consensus 181 gl---~G-p~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~vLvgG~e~ 222 (451)
T 4ddo_A 181 RF---RG-PLGCPVTACAASVQAIGDAMRMIRTGEA--DVVLAGGAEA 222 (451)
T ss_dssp TC---CS-CEECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEEC
T ss_pred cC---CC-ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEecccc
Confidence 98 32 7889999999999999999999999977 9999999997
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-10 Score=113.60 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=100.0
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-EcccceEEec---------cCCC-----CCHHHHHHHH
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-VGLGQDCMAF---------CSEV-----EDVISMSLTV 64 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~Gig~r~~av---------~~~~-----ed~~~la~~A 64 (453)
...|-|.+++..+|.-. +.+++.+.. |.+. .++. .++..+.-.. .++. .....|+++|
T Consensus 8 ~~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~a 86 (415)
T 1tqy_B 8 DKSVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTA 86 (415)
T ss_dssp --CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHH
T ss_pred CCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHH
Confidence 35699999999999874 777665542 2211 0000 0000000000 0111 2347899999
Q ss_pred HHHHHHHcCCCcCCcC----EEEEEcccCCC--------------------------CCccHHHHHHHHhcccCCCCeeE
Q 012909 65 VTSLLEKYKIDPTQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 65 a~~aL~~agi~~~~Id----~li~~t~s~~~--------------------------~~~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
++++|+++|+++++|| .|+++|.++.. ..+..+.+|+..||+ + .++
T Consensus 87 a~~AL~dAGl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~-gp~ 162 (415)
T 1tqy_B 87 ADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGM---R-GPS 162 (415)
T ss_dssp HHHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTC---C-SSC
T ss_pred HHHHHHHcCCCccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCC---C-Cce
Confidence 9999999999999999 89999875432 235678899999998 2 268
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+.+..+|++++.||..|..+|++| . +.|||+++|.
T Consensus 163 ~~v~~aCsS~l~Al~~A~~~I~~G-~--d~~LvgG~e~ 197 (415)
T 1tqy_B 163 SALVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDS 197 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEEC
T ss_pred EeecCCccHHHHHHHHHHHHHHcC-C--CEEEEeeecC
Confidence 899999999999999999999999 9 8999999997
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-10 Score=114.81 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=99.4
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee-E-cccceEEe----ccC----------CCCCHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT-V-GLGQDCMA----FCS----------EVEDVISMSLTV 64 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~-~-Gig~r~~a----v~~----------~~ed~~~la~~A 64 (453)
..|-|.+++..+|.- .+.+++.+.. |.+. ..+. . ++..+... |.. .-.....|+++|
T Consensus 6 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~a 84 (412)
T 4ewg_A 6 KRVVITGMGGVTALG-SRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVRA 84 (412)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHHH
T ss_pred CEEEEEeeEEECCCc-CCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHHH
Confidence 469999999999985 4666665543 2211 0000 0 11111100 100 012346799999
Q ss_pred HHHHHHHcCC-CcCCcC----EEEEEcccCC--------------------------CCCccHHHHHHHHhcccCCCCee
Q 012909 65 VTSLLEKYKI-DPTQIG----RLEVGSETVI--------------------------DKSKSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 65 a~~aL~~agi-~~~~Id----~li~~t~s~~--------------------------~~~~~~a~~l~~~Lgl~G~~~~~ 113 (453)
++++|+++|+ ++++|| .+++++.++. ...+..+.+|+..||+ +. +
T Consensus 85 a~~Al~dAGl~~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~g-p 160 (412)
T 4ewg_A 85 SELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL---KG-R 160 (412)
T ss_dssp HHHHHHHHTCTTCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTC---CS-C
T ss_pred HHHHHHhcCCCCccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCC---CC-C
Confidence 9999999999 788888 8888876532 1124578899999998 32 7
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++.+..+|+|++.||..|..+|++|.. +.|||+++|.+
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~ 198 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQ--TLMLAGGAEEL 198 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeccccC
Confidence 889999999999999999999999976 99999999964
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-10 Score=117.21 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcCC-cC----EEEEEcccC--------------------------CCCCccHHHHHHHHhc
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQ-IG----RLEVGSETV--------------------------IDKSKSIKTFLMQIFE 105 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~-Id----~li~~t~s~--------------------------~~~~~~~a~~l~~~Lg 105 (453)
...|+++|++++|+++|+++++ || .+++++..+ ....+..+..|+..||
T Consensus 87 ~~~l~l~aa~~AL~dAGl~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lg 166 (428)
T 3kzu_A 87 FIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHK 166 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHHcC
Confidence 4789999999999999999998 87 577777532 2234457889999999
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+ .. +++.+..+|+|++.||..|..+|++|.. +.|||+++|.
T Consensus 167 l---~G-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 207 (428)
T 3kzu_A 167 L---RG-PNHSVVTACATGTHAIGDAARLIAFGDA--DVMVAGGTES 207 (428)
T ss_dssp C---CS-CEECBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEC
T ss_pred C---CC-ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeeecC
Confidence 8 22 6889999999999999999999999976 9999999997
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=111.83 Aligned_cols=90 Identities=9% Similarity=0.078 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHcCC-CcCCcC----EEEEEcccCC-----------------CCC---------ccHHHHHHHHhc
Q 012909 57 VISMSLTVVTSLLEKYKI-DPTQIG----RLEVGSETVI-----------------DKS---------KSIKTFLMQIFE 105 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi-~~~~Id----~li~~t~s~~-----------------~~~---------~~~a~~l~~~Lg 105 (453)
...|+++|++++|+++|+ ++++|| .|++++.++. ... ...+.+|+..||
T Consensus 88 ~~~l~l~aa~~AL~dAG~~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 167 (431)
T 2ix4_A 88 FIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYG 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCccccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhHHHHHHHHHHHC
Confidence 358999999999999999 988888 5888875442 111 247889999999
Q ss_pred ccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 106 KYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 106 l~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
+ +. +++++..+|+|++.||..|..+|++|.. +.|||+++|.
T Consensus 168 l---~g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~ 208 (431)
T 2ix4_A 168 F---QG-PNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTES 208 (431)
T ss_dssp C---CS-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEEC
T ss_pred C---CC-ceeCccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeecc
Confidence 8 32 6899999999999999999999999976 9999999995
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-11 Score=120.48 Aligned_cols=97 Identities=6% Similarity=0.121 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.++++.+|+++|++++|+++|++|++||.|++++.++... .+..+..|+..||+ +...+++++..+|++++.||..|
T Consensus 22 ~~~~~~~L~~~Aa~~Al~dAgl~~~~id~v~~g~~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCas~~~Al~~A 99 (401)
T 1ulq_A 22 ASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQA 99 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecccCCCCCChHHHHHHHHhCC--CCCccEeeccccchHHHHHHHHH
Confidence 4688999999999999999999999999999999887654 57899999999998 55789999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..+|++|.. +.|||+++|.+
T Consensus 100 ~~~I~~G~~--d~vLv~G~e~~ 119 (401)
T 1ulq_A 100 ARAIWAGEG--KVYIGSGVESM 119 (401)
T ss_dssp HHHHHTTSC--SEEEEEEEEES
T ss_pred HHHHHCCCC--CEEEEEEEeec
Confidence 999999976 99999999987
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-08 Score=103.00 Aligned_cols=140 Identities=11% Similarity=-0.038 Sum_probs=97.3
Q ss_pred CceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee---EcccceEEeccCCC-------------CCHHHHHHH
Q 012909 6 PKNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT---VGLGQDCMAFCSEV-------------EDVISMSLT 63 (453)
Q Consensus 6 ~~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~---~Gig~r~~av~~~~-------------ed~~~la~~ 63 (453)
.+.|-|.+++..+|.-. +.+++.+.. |.+. .++. .++-.+.-.+.+++ .....|+++
T Consensus 27 ~~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~d~~~~l~l~ 105 (434)
T 2gp6_A 27 FPYVVVTGIAMTTALAT-DAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTV 105 (434)
T ss_dssp SCCEEEEEEEEECSSCS-SHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSCCSTTSSCHHHHHTCCHHHHHHHH
T ss_pred CCCEEEEeeEEeCCCCC-CHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCCchhhhCCHHHHHhCCHHHHHHHH
Confidence 34699999999999874 777765543 3211 0110 01111111111110 123689999
Q ss_pred HHHHHHHHcCCC---cCCcCEEEEEcccCCC-----------------CCc---------cHHHHHHHHhcccCCCCeeE
Q 012909 64 VVTSLLEKYKID---PTQIGRLEVGSETVID-----------------KSK---------SIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 64 Aa~~aL~~agi~---~~~Id~li~~t~s~~~-----------------~~~---------~~a~~l~~~Lgl~G~~~~~~ 114 (453)
|++++|+++|++ +++|+ |+++|.++.. ..| ..+.+|+..||+ . .++
T Consensus 106 aa~~ALedAG~~~~~~~~ig-v~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl---~-Gp~ 180 (434)
T 2gp6_A 106 LSRRLWENAGSPEVDTNRLM-VSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHA---K-AGV 180 (434)
T ss_dssp HHHHHHHHTTCCCCCTTSEE-EEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCC---C-SCE
T ss_pred HHHHHHHhcCCCccCCCceE-EEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcC---C-CCe
Confidence 999999999984 55565 6777765432 111 468899999998 2 378
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+++..+|++++.||..|..+|++|.. +.|||+++|.+
T Consensus 181 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~ 217 (434)
T 2gp6_A 181 MTPVSACASGAEAIARAWQQIVLGEA--DAAICGGVETR 217 (434)
T ss_dssp ECEECGGGHHHHHHHHHHHHHHHTSC--SEEEEEEECCC
T ss_pred EEeCCCCcHHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 99999999999999999999999976 99999999974
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=111.90 Aligned_cols=140 Identities=10% Similarity=0.066 Sum_probs=101.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCcC-e---e-eEcccceEEe---------c----cCCCCCHHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSKG-K---Y-TVGLGQDCMA---------F----CSEVEDVISMSLTVVT 66 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~~-k---~-~~Gig~r~~a---------v----~~~~ed~~~la~~Aa~ 66 (453)
..|.|.++++.+|.- .+.+++.+.. |.+.- . + ..++..+.-. + ...-.....|++.|++
T Consensus 23 ~~V~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~~~fd~~~~i~~~~~~~~d~~~~l~~~aa~ 101 (428)
T 3mqd_A 23 RRVVVTGMGIVSSIG-SNTEEVTASLREAKSGISRAEEYAELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIAMD 101 (428)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCHHHHSCTGGGTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCc-CCHHHHHHHHHcCCCcceeCCcccccCCCcccccccCCChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 469999999999986 4666665553 32210 0 0 0011111000 0 0112345789999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEcccCCCC--------------------------CccHHHHHHHHhcccCCCCeeEEe
Q 012909 67 SLLEKYKIDPTQIG----RLEVGSETVIDK--------------------------SKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 67 ~aL~~agi~~~~Id----~li~~t~s~~~~--------------------------~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
++|+++|+++++|| .|++++.++... .+.++.+|+..||+ + .+++.
T Consensus 102 ~Al~dAGl~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl---~-gp~~t 177 (428)
T 3mqd_A 102 QAIADAGLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKI---K-GINYS 177 (428)
T ss_dssp HHHHHHTCCHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTC---C-SCEEC
T ss_pred HHHHHcCCChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCC---C-Cceee
Confidence 99999999999998 688888755421 23578899999998 2 37899
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+..+|+|++.||..|..+|++|.. +.|||+++|.+
T Consensus 178 v~~aCsSgl~Ai~~A~~~I~~G~~--d~alvgG~e~~ 212 (428)
T 3mqd_A 178 ISSACATSNHCIGNAYEMIQYGKQ--DRMFAGGCEDL 212 (428)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred ecCccHHHHHHHHHHHHHHHcCCC--CEEEEEeeccc
Confidence 999999999999999999999976 99999999864
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-08 Score=102.74 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=96.2
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCc----Ceee---EcccceEEeccCCC-------------CCHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSK----GKYT---VGLGQDCMAFCSEV-------------EDVISMSLTV 64 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~----~k~~---~Gig~r~~av~~~~-------------ed~~~la~~A 64 (453)
+.|-|.++++.+|.- .+.+++.+.. |.+. .++. .++-.+.-.+.+++ .....|+++|
T Consensus 12 ~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~~~l~l~a 90 (416)
T 2wge_A 12 PSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYVQRMGKLL 90 (416)
T ss_dssp CCEEEEEEEEEESSC-SSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSSCGGGGCCHHHHHHSCHHHHHHHHH
T ss_pred CcEEEEeeEEECCCC-CCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCCchhhhCCHHHHHhcCHHHHHHHHH
Confidence 469999999999987 5777765553 3221 0110 01111111111110 1235799999
Q ss_pred HHHHHHHcCCCcCCcCE----EEEEcccCCCC-----------------Cc---------cHHHHHHHHhcccCCCCeeE
Q 012909 65 VTSLLEKYKIDPTQIGR----LEVGSETVIDK-----------------SK---------SIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 65 a~~aL~~agi~~~~Id~----li~~t~s~~~~-----------------~~---------~~a~~l~~~Lgl~G~~~~~~ 114 (453)
++++|+++|+ +++|. |+++|.++... .| ..+.+|+..||+ . .++
T Consensus 91 a~~AL~dAG~--~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl---~-gp~ 164 (416)
T 2wge_A 91 GGQLWESAGS--PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGA---R-AGV 164 (416)
T ss_dssp HHHHHHHTTC--CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTC---C-SCE
T ss_pred HHHHHHHcCC--CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhcc---C-CCc
Confidence 9999999998 34442 88888765431 12 468899999998 2 478
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+++..+|++++.||..|..+|++|.. +.|||+++|.+
T Consensus 165 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~ 201 (416)
T 2wge_A 165 MTPVSACSSGSEAIAHAWRQIVMGDA--DVAVCGGVEGP 201 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEECCCC
T ss_pred ccccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecCc
Confidence 99999999999999999999999976 99999999864
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=118.32 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcC----CCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYK----IDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~ag----i~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL 128 (453)
.++++.+|+++|++++|+++| +++++||.|++++.++....+..+.+++..||+ +.+.+++++..+|++++.||
T Consensus 31 ~~~~~~~La~~Aa~~Al~~Ag~~~~l~~~~id~v~~g~~~~~~~~~~~a~~va~~lGl--~~~~p~~~v~~aCasg~~Al 108 (393)
T 1afw_A 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHCCEEEEEecCCCCCCChHHHHHHHHcCC--CCCceEEEEcCcCHHHHHHH
Confidence 378899999999999999999 999999999999988766667789999999998 55789999999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 129 FNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 129 ~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|..+|++|.. +.+||+++|.+
T Consensus 109 ~~A~~~I~~G~~--d~vLv~G~e~~ 131 (393)
T 1afw_A 109 NDIANKIKVGQI--DIGLALGVESM 131 (393)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEH
T ss_pred HHHHHHHHCCCC--CEEEEEEEEec
Confidence 999999999976 99999999976
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-08 Score=115.12 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEcccCCCCC-------------------ccHHHHHHHHhcccCCCCee
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVIDKS-------------------KSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~t~s~~~~~-------------------~~~a~~l~~~Lgl~G~~~~~ 113 (453)
...|+.+|+.++|+++|+++++||. |++|+.+.++.. ..++..|...||+ .. +
T Consensus 116 ~~rl~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl---~G-p 191 (917)
T 2hg4_A 116 QQRIMLEISWEALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGL---EG-P 191 (917)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGTTSCEEEEEEECCCCCSCCTTSSCGGGGGGHHHHHCHHHHHHHHHHHHTC---CS-C
T ss_pred HHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEeCCchhhhhhhcCccccCcccccccccchHHHHHHHhcCC---CC-C
Confidence 3689999999999999999999985 888887655421 1367789999998 32 6
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++.+..+|++++.||..|+..|++|.. +.|||+++|.+
T Consensus 192 s~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGv~~~ 229 (917)
T 2hg4_A 192 AMTVDTACSSGLTALHLAMESLRRDEC--GLALAGGVTVM 229 (917)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred eEeecCCcHHHHHHHHHHHHHHHcCCC--CEEEEeEeccc
Confidence 888999999999999999999999966 99999999975
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-10 Score=113.51 Aligned_cols=110 Identities=7% Similarity=-0.000 Sum_probs=94.2
Q ss_pred eEcccceEEeccC---CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe
Q 012909 40 TVGLGQDCMAFCS---EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 40 ~~Gig~r~~av~~---~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
.+|.++..+.-.. .+++..+|+++|++++|+++|+++++||.+++++..+....+..+..++..||+ +.+.++++
T Consensus 12 Ivg~~rTp~g~~~g~~~~~~~~~l~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~~a~~va~~lgl--~~~~p~~~ 89 (395)
T 2ib8_A 12 IVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGL--PISTPCTT 89 (395)
T ss_dssp EEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTCCEEE
T ss_pred EEecccccccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCchHHHHHHHHcCC--CCCceEEE
Confidence 3455544433211 357899999999999999999999999999999988766677889999999998 55789999
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+..+|++++.||..|..+|++|.. +.|||+++|.+
T Consensus 90 v~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~e~~ 124 (395)
T 2ib8_A 90 INKVCASGMKAIMMASQSLMCGHQ--DVMVAGGMESM 124 (395)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEG
T ss_pred ecccccHHHHHHHHHHHHHHCCCC--CEEEEEeeecc
Confidence 999999999999999999999976 99999999976
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=117.87 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=93.1
Q ss_pred eeEcccceEEeccC----CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCee
Q 012909 39 YTVGLGQDCMAFCS----EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIE 113 (453)
Q Consensus 39 ~~~Gig~r~~av~~----~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~ 113 (453)
+.+|.++..+.... .+++..+|+++|++++|+++|+++++||.|++++.++... .+..+..++..||+ +...+
T Consensus 33 ~Ivg~~rT~~g~~~~g~~~~~~~~~La~~Aa~~AL~dAGl~~~~Id~vi~g~~~~~~~~~~~~a~~va~~lGl--~~~~p 110 (442)
T 2wu9_A 33 VIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGF--PETVA 110 (442)
T ss_dssp EEEEEEECCCEETTTSTTTTCCHHHHHHHHHHHHHHHHTCCGGGCCCEEEECCSSBHHHHHHHHHHHHHHTTC--CTTSC
T ss_pred EEEEcCcCCeeecCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeecCccCCCChHHHHHHHHcCC--CCCce
Confidence 34555554443211 3688999999999999999999999999999998776432 35678899999998 55789
Q ss_pred EEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 114 GVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 114 ~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
++++..+|+|++.||..|..+|++|.. +.|||+++|.+
T Consensus 111 ~~~v~~aCaSg~~Al~~A~~~I~sG~~--d~vLvgG~e~~ 148 (442)
T 2wu9_A 111 VRTVNRQCSSGLQAVADVAAAIKAGFY--DIGIGAGLESM 148 (442)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEET
T ss_pred EEEeCCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEeec
Confidence 999999999999999999999999976 99999999976
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.06 E-value=9.5e-10 Score=112.40 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
+++..+|+++|++++|+++|+++++||.+++++..+....+..+.+|+..||+ +...+++++..+|++++.||..|..
T Consensus 27 ~~~~~~L~~~a~~~Al~dAGl~~~~id~v~~g~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaSg~~Ai~~A~~ 104 (397)
T 1wl4_A 27 AVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGI--PYSVPAWSCQMICGSGLKAVCLAVQ 104 (397)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSCEEEECCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCCHHHHHHHHHcCC--CCCccEEEecCcChhHHHHHHHHHH
Confidence 57889999999999999999999999999999988765567899999999998 5578999999999999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc
Q 012909 134 WVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|++|.. +.|||+++|.+
T Consensus 105 ~I~~G~~--d~vlagG~e~~ 122 (397)
T 1wl4_A 105 SIGIGDS--SIVVAGGMENM 122 (397)
T ss_dssp HHHTTSC--SEEEEEEEEES
T ss_pred HHHCCCC--CEEEEEEEeec
Confidence 9999976 99999999987
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-09 Score=116.43 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCE----EEEEcccCCCCC------------------ccHHHHHHHHhcccCCCCeeE
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGR----LEVGSETVIDKS------------------KSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~----li~~t~s~~~~~------------------~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
...|+++|++++|+++|+++++||. |++|+.++.+.. ..++.+|+..||+ .. ++
T Consensus 95 ~~rL~leaa~eALedAGi~~~~i~~~~~gV~vG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl---~G-ps 170 (915)
T 2qo3_A 95 QQRLLLETSWELVENAGIDPHSLRGTATGVFLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGL---EG-PS 170 (915)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGGTTBCCEEEEECCCCCTTTTCC---CTTCHHHHTTCHHHHHHHHHHHHTB---CS-CE
T ss_pred HHHHHHHHHHHHHHHcCCChHHcCCcceEEEEEecCchHHhhhcccccccccccccccccHHHHHHHHHhCC---CC-CE
Confidence 4689999999999999999999994 888887665421 1467899999998 33 78
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+..+|+|++.||..|+.+|++|.. +.|||+++|.+
T Consensus 171 ~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGve~~ 207 (915)
T 2qo3_A 171 ISVDTACSSSLVALHLAVESLRKGES--SMAVVGGAAVM 207 (915)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SSEEEEEEECC
T ss_pred EEECCCCHHHHHHHHHHHHHHHcCCC--CEEEEeEehhh
Confidence 89999999999999999999999976 99999999974
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=101.29 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=99.7
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCCcC----ee-eEcccceEEe---ccC---------CC-CCHHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVSKG----KY-TVGLGQDCMA---FCS---------EV-EDVISMSLTVVT 66 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~~~----k~-~~Gig~r~~a---v~~---------~~-ed~~~la~~Aa~ 66 (453)
+.|-|.+++..+|.- .+.+++.+.. |.+.- ++ ..++..+... |.. .. .....|+++|++
T Consensus 2 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 80 (406)
T 2vba_A 2 KRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSME 80 (406)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEecCChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 369999999999987 5777765542 32210 00 0011111000 100 01 224689999999
Q ss_pred HHHHHcCCCcCCcCE-----EEEEcccCCC-------------C--------------CccHHHHHHHHhcccCCCCeeE
Q 012909 67 SLLEKYKIDPTQIGR-----LEVGSETVID-------------K--------------SKSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 67 ~aL~~agi~~~~Id~-----li~~t~s~~~-------------~--------------~~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
++|+++|+++++||. |++|+.++.. . ....+.+|+..||+ . -++
T Consensus 81 ~Al~dAg~~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl---~-Gp~ 156 (406)
T 2vba_A 81 QAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKI---H-GVN 156 (406)
T ss_dssp HHHHHHTCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTC---C-SCE
T ss_pred HHHHHCCCChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccC---C-Cce
Confidence 999999999988886 8898876542 1 12567889999998 3 378
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+..+|++++.||..|..+|++|.. +.+||+++|.+
T Consensus 157 ~~v~taCsS~l~Al~~A~~~I~~G~~--d~alvgG~e~~ 193 (406)
T 2vba_A 157 YSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEEL 193 (406)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred eeeccchhHHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 99999999999999999999999976 99999999863
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=8.8e-10 Score=112.37 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCcCCcCEEEEEcccCCCC-CccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEKY-KIDPTQIGRLEVGSETVIDK-SKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~a-gi~~~~Id~li~~t~s~~~~-~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+++..+|+++|++++|+++ |+++++||.|++++.++... .+..+.+|+..||+ +...+++.+..+|++++.||..|
T Consensus 27 ~~~~~~L~~~a~~~AL~dA~gl~~~~id~v~~g~~~~~~~~~~~~a~~ia~~lgl--~~~~p~~~v~~aCaS~~~Al~~A 104 (390)
T 1wdk_C 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (390)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCCCHHHCCEEEEEeeccccCCCCcHHHHHHHHcCC--CCCccEEEEcccchhHHHHHHHH
Confidence 6789999999999999999 99999999999998876543 36789999999998 56889999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..+|++|.. +.|||+++|.+
T Consensus 105 ~~~I~~G~~--d~vlvgG~e~~ 124 (390)
T 1wdk_C 105 AQAIMTGNG--DVFVVGGVEHM 124 (390)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHcCCC--CEEEEeeeecc
Confidence 999999976 99999999976
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.5e-08 Score=109.10 Aligned_cols=140 Identities=18% Similarity=0.198 Sum_probs=100.7
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC-----cCeeeEcc-c-ceEEe-------ccCC----------CCC-HHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS-----KGKYTVGL-G-QDCMA-------FCSE----------VED-VIS 59 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~-----~~k~~~Gi-g-~r~~a-------v~~~----------~ed-~~~ 59 (453)
..|-|.|+++-+|.- .+.+++.+.. |.+ +.++..+. + .++.. |... ..| ...
T Consensus 4 ~~IaIvGmg~r~P~~-~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 4 EEVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 568999999999985 5777765543 321 11111000 0 00000 1000 112 356
Q ss_pred HHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC-------------------CCccHHHHHHHHhcccCCCCeeEEe
Q 012909 60 MSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID-------------------KSKSIKTFLMQIFEKYGNTDIEGVD 116 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~-------------------~~~~~a~~l~~~Lgl~G~~~~~~~d 116 (453)
|+.+|+.++|+++|++|++|| .+++|+.+.++ ....++..|...||+. . +++.
T Consensus 83 L~leaa~eALedAGi~~~~i~~~~~Gv~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~---G-Ps~t 158 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR---G-PSIA 158 (965)
T ss_dssp HHHHHHHHHHHHTTCCGGGGTTSCCEEEEEECCCHHHHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC---S-CEEE
T ss_pred HHHHHHHHHHHHcCCChHHcCCceeEEEEeccchhHHHHHhcCccccCcccccccccchHHHHHHHHhCCC---C-Ceee
Confidence 999999999999999999999 78888765543 2234788999999983 2 7889
Q ss_pred eCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 117 STNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 117 v~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+..||+|++.||..|+..|++|.. +.|||.++|.+
T Consensus 159 vdtACSSsl~Al~~A~~~I~~G~~--d~aLagGv~~~ 193 (965)
T 3hhd_A 159 LDTACSSSLMALQNAYQAIHSGQC--PAAIVGGINVL 193 (965)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred ecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 999999999999999999999976 99999999975
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-07 Score=98.12 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=83.7
Q ss_pred eEcccceEEecc---CCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccC------------CCCCccHHHHHHHHh
Q 012909 40 TVGLGQDCMAFC---SEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETV------------IDKSKSIKTFLMQIF 104 (453)
Q Consensus 40 ~~Gig~r~~av~---~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~------------~~~~~~~a~~l~~~L 104 (453)
.+|+|+..+... ....++.+|+++|++.+|+++|++|++||.+|.+.... ..........+...|
T Consensus 22 IVGvG~t~~r~~~g~~~~~s~~dL~a~Ai~~AL~dAGl~p~~Vd~vI~g~~~~~~~~~~~~~~~~~g~~~~~~~~va~~l 101 (520)
T 4egv_A 22 IVGVGQFTERIDLDGYRGMSSVELATEAAKAALHDCGADADTVARAIDTVAGTRQFEISGPASAPLGVSSNYPRSVARNI 101 (520)
T ss_dssp EEEEEEEEC--------CCCHHHHHHHHHHHHHHHTSSCHHHHHHHCCEEEECCC--------------CCHHHHHHHHH
T ss_pred EEEeeeccccCCCCCCCCCCHHHHHHHHHHHHHHHhCcCHHHcceEEEEEeecccccccchhhhhhccccCHHHHHHHHc
Confidence 468886543211 23568899999999999999999999988776442211 112345677899999
Q ss_pred cccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 105 EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 105 gl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
|+ +..+++.+.++|+++..++..|...|++|.. +.||++++|.+
T Consensus 102 Gl---~~~~~~~~~~~caSg~~av~~AA~aI~aG~a--dvvlAgG~EsM 145 (520)
T 4egv_A 102 GA---DPAHAVLEVIGGQSPQHLATEFGGKIAAGEN--DVVLIFGSENT 145 (520)
T ss_dssp TC---CCSEEEECCSSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred CC---CCceEEEecCCCHHHHHHHHHHHHHHHcCCC--CEEEEEEEEec
Confidence 98 5577888899999999999999999999976 99999999987
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-06 Score=102.38 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcC--------EEEEEcccCCC------------------------CCccHHHHHHH-H
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIG--------RLEVGSETVID------------------------KSKSIKTFLMQ-I 103 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id--------~li~~t~s~~~------------------------~~~~~a~~l~~-~ 103 (453)
...|+++|+.++|+++|++|++|+ .+++|+..+.. .....+..+.. .
T Consensus 2647 ~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~is~~~ 2726 (3089)
T 3zen_D 2647 VALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726 (3089)
T ss_dssp HHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTTHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccchhhccccccHHHHHHHHHH
Confidence 467999999999999999999885 57777754210 01224555554 5
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
||+ . .+++.+..+|+|++.||..|+..|++|.+ +.+||.++|.+
T Consensus 2727 lGl---~-GPs~tV~tACSSsl~Al~~A~~~IrsG~~--d~aLaGGve~l 2770 (3089)
T 3zen_D 2727 VGG---Y-GAMVHPVGACATAAVSVEEGVDKIKLGKA--DLVIAGGFDDL 2770 (3089)
T ss_dssp TCC---C-SCEECCBCTTCHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cCC---C-CCceeeccchhhHHHHHHHHHHHHHCCCC--CeeEEeeeccc
Confidence 587 2 37999999999999999999999999976 99999999864
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.7e-05 Score=87.53 Aligned_cols=89 Identities=15% Similarity=0.023 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHcCCC-cCCc----C----EEEEEcccCCC------------------------CCccHHHHHHH-H
Q 012909 58 ISMSLTVVTSLLEKYKID-PTQI----G----RLEVGSETVID------------------------KSKSIKTFLMQ-I 103 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~-~~~I----d----~li~~t~s~~~------------------------~~~~~a~~l~~-~ 103 (453)
..|++.|+.+||+++|++ |.++ + .+++|+..+.. .....+.++.. .
T Consensus 1013 qrLaLeAa~EALedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~~~ 1092 (1688)
T 2pff_A 1013 TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL 1092 (1688)
T ss_dssp TTHHHHHHHHHHTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhcCCCCcchhccccHHHHHHHHHHHH
Confidence 469999999999999998 6552 2 45556544321 01234556666 5
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
||+. -+++.+..||++++.||..|++.|++|.+ +.+||.++|.
T Consensus 1093 LGl~----GPs~TVdtACASSL~AL~lA~~aIrsGea--DvaLVGGvE~ 1135 (1688)
T 2pff_A 1093 ISSS----GPIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDD 1135 (1688)
T ss_dssp CCCC----CCCCCCCCTTTTTHHHHHHHHHHHHTTTC--SCBCCCCCCC
T ss_pred cCCc----CCeEEecCCCchHHHHHHHHHHHHHCCCC--CEEEEeeecc
Confidence 7872 36788999999999999999999999976 9999999987
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00067 Score=83.52 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC----------C---------CccHHHHHHHHhcccCCCCeeE
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID----------K---------SKSIKTFLMQIFEKYGNTDIEG 114 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~----------~---------~~~~a~~l~~~Lgl~G~~~~~~ 114 (453)
.-|+.+++.++|+++|+++++++ .|++|+.+.++ . .-..+.+|...||+.| ++
T Consensus 79 ~rl~l~~~~eAle~Ag~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~G----ps 154 (2512)
T 2vz8_A 79 LRMLLEVTYEAIVDGGINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKG----PS 154 (2512)
T ss_dssp HHHHHHHHHHHHGGGTCCGGGGTTCSCEEEEEECCCHHHHHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCCS----CE
T ss_pred HHHHHHHHHHHHHHCCCChhhcCCCCeEEEEEeccHHHHHHHhcCccccCcceecccchhHHHHHHHHHhCCCC----Cc
Confidence 46899999999999999886653 56777654321 0 0126789999999833 47
Q ss_pred EeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 115 VDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 115 ~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+.+..||++++.||..|++.|++|.. +.+||.+++..
T Consensus 155 ~tv~tACsSsl~Al~~A~~~l~~g~~--d~al~gG~~~~ 191 (2512)
T 2vz8_A 155 ITIDTACSSSLLALQSAYQAIRGGEC--SAAVVGGLNVL 191 (2512)
T ss_dssp EEEECTTSTHHHHHHHHHHHHHTSSC--SEEEEEEEECC
T ss_pred eeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeEeccc
Confidence 78899999999999999999999966 89999999975
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0038 Score=73.91 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCC-CcCCc----C----EEEEEcccCC---------C---------------CCccHHHHHHHH-
Q 012909 58 ISMSLTVVTSLLEKYKI-DPTQI----G----RLEVGSETVI---------D---------------KSKSIKTFLMQI- 103 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi-~~~~I----d----~li~~t~s~~---------~---------------~~~~~a~~l~~~- 103 (453)
..|++.++.++|+++|+ +|.++ + .+++|+..+. + ..-..+.+|...
T Consensus 1212 ~~l~L~aa~eAL~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~is~~~ 1291 (1887)
T 2uv8_A 1212 TLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLL 1291 (1887)
T ss_dssp HHHHHHHHHHHHHHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTTCCCCTTHHHHHSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhcCCCCcchhhcchhhHHHHHHHHHH
Confidence 46899999999999999 47662 2 4556654332 0 112356677774
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
||+.| +.+.+..||++++.||..|+..|++|.+ +.+||.++|.+
T Consensus 1292 lgl~G----P~~tv~tACASsl~Al~~A~~~I~sG~a--dvaLvGGvd~~ 1335 (1887)
T 2uv8_A 1292 ISSSG----PIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDF 1335 (1887)
T ss_dssp TCCCS----CCCCCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cCCcc----ceEEeecccccHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 88733 5777899999999999999999999977 99999999986
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0056 Score=72.42 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHcCCC-cCCc----C----EEEEEcccCC-------------------C-----CCccHHHHHHH-H
Q 012909 58 ISMSLTVVTSLLEKYKID-PTQI----G----RLEVGSETVI-------------------D-----KSKSIKTFLMQ-I 103 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~-~~~I----d----~li~~t~s~~-------------------~-----~~~~~a~~l~~-~ 103 (453)
..|+..++.++|+++|++ |.++ + .+++|+..+. + ..-.++.+|.. .
T Consensus 1187 ~~l~L~aa~eAL~~AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~~~ 1266 (1878)
T 2uv9_A 1187 TLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNMLL 1266 (1878)
T ss_dssp HHHHHHHHHHHHHTTTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhcCCCCchhhhcchHHHHHHHHHHHh
Confidence 468899999999999998 7662 2 5666665432 0 01134567777 4
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
||+.| +.+.+..||++++.||..|+..|++|.+ +.+||.++|.+
T Consensus 1267 lg~~G----P~~tv~tACASsl~Al~~A~~~I~sG~a--dvalvGGvd~~ 1310 (1878)
T 2uv9_A 1267 LSSTG----PIKTPVGACATAVESLDVGYDTIMQGKA--RVCLVGGFDDF 1310 (1878)
T ss_dssp CCCCC----CBCCBCCGGGHHHHHHHHHHHHHTTTSC--SEEEEEEEECC
T ss_pred cCCCC----CeEEEcCcchHHHHHHHHHHHHHHcCCC--CEEEEeeeccC
Confidence 88733 5777899999999999999999999977 99999999986
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.64 E-value=1.7 Score=45.34 Aligned_cols=134 Identities=12% Similarity=0.007 Sum_probs=81.7
Q ss_pred eechhHHhhhhCCCcCe-ee-EcccceEEe-c-cCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHH
Q 012909 22 CVLQEALEVHDGVSKGK-YT-VGLGQDCMA-F-CSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIK 97 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k-~~-~Gig~r~~a-v-~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a 97 (453)
.|..++.++..|++|.. +. .|.....-. + ..++.....-...|++++|+++|++++|||.+.+.. -.+...
T Consensus 276 VL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~~d-----AF~~~~ 350 (520)
T 4egv_A 276 LMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLYS-----CFPFPV 350 (520)
T ss_dssp EEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEECC-----SSSHHH
T ss_pred EEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEEeC-----CcHHHH
Confidence 46677888888987743 32 122211100 0 011111233456789999999999999999999863 334556
Q ss_pred HHHHHHhcccCCCCeeEEe-------eC-CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc---ceeeeecCCC
Q 012909 98 TFLMQIFEKYGNTDIEGVD-------ST-NACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA---AVAMLIGPDA 163 (453)
Q Consensus 98 ~~l~~~Lgl~G~~~~~~~d-------v~-~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~---AvA~Ll~~~~ 163 (453)
....+.||+..... ..+. ++ -..++|+.++..+...|+.+ .+++.|+.+.--. ..+++++.++
T Consensus 351 l~~~~~lG~~~~~~-~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~--~~~~~L~~~~gg~~~~~~~~~l~~~~ 424 (520)
T 4egv_A 351 FNICDGTGLATDDP-RGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDK--PGQFALVGANGGIASKYSVGIYSTEP 424 (520)
T ss_dssp HHHHHHHCCCTTCT-TCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHS--TTCEEEEEEEETTTTEEEEEEEESSC
T ss_pred HHHHHHhCCCCCCC-CCcCCCcccccCCChHHHHHHHHHHHHHHHHhcC--CCCceEEeCCCCeeeeeeEEEEcCCC
Confidence 67778888731111 1111 22 13456778888888888888 6799998754332 5666666664
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.42 E-value=1.1 Score=45.27 Aligned_cols=124 Identities=14% Similarity=0.101 Sum_probs=66.7
Q ss_pred eechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 22 CVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 22 ~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
.+..++-++.+|..+--...|.+.... .+... .+-...|++++|+++|++|+|||.+.+.-. .........
T Consensus 272 vL~s~~~A~~~g~~~~a~i~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~~e~hda-----f~~~~l~~~ 342 (407)
T 3svk_A 272 LVGSEKAGKSQGLTPRARIVATATSGS---DPVIM-LTGPTPATRKVLDRAGLTIDDIDLFELNEA-----FASVVLKFQ 342 (407)
T ss_dssp EEECHHHHHHTTCCCCEEEEEEEEC---------C-CCTHHHHHHHHHHHHTCCGGGCSEEEECCS-----BHHHHHHHH
T ss_pred EEeeHHHHHHcCCCCcEEEEEEEEecc---CCccc-cHHHHHHHHHHHHHcCCCHHHCCEEEEeCh-----hHHHHHHHH
Confidence 455667777788766322234443321 11110 111357899999999999999999997422 222334556
Q ss_pred HHhcccCCCCeeEEeeC---------CcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 102 QIFEKYGNTDIEGVDST---------NACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 102 ~~Lgl~G~~~~~~~dv~---------~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
+.||+ ... -+.++ .+++ |+..+..+...++.. ++++.|+...-- .+.|+||++
T Consensus 343 ~~lg~--~~~--~vn~~Gg~~~~GHp~gas-G~~~~~~~~~~L~~~--~~~~gl~~~c~ggG~g~a~~~e~ 406 (407)
T 3svk_A 343 KDLNI--PDE--KLNVNGGAIAMGHPLGAT-GAMITGTMVDELERR--NARRALITLCIGGGMGVATIIER 406 (407)
T ss_dssp HHHTC--CGG--GBSTTCCHHHHCBCGGGH-HHHHHHHHHHHHHHH--TCCEEEEEEECSSSCEEEEEEEE
T ss_pred HHhCC--CCC--CCCCCCcHhheeCcHHHH-HHHHHHHHHHHHHhc--CCCEEEEEeeccCcceEEEEEEc
Confidence 77887 221 11111 1333 334444444555543 347777643322 277887764
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=90.66 E-value=1.4 Score=44.00 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=68.5
Q ss_pred echhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 23 v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
|..++-++.+|.++ .++ .|.+.... .+... ..-...|++++|+++|++|+|||.+.+. |.....+..+.
T Consensus 258 L~s~~~A~~~g~~~~a~i-~g~~~~~~---~p~~~-~~~~~~a~~~al~~agl~~~dId~ie~~-----d~f~~~~l~~~ 327 (392)
T 2vu1_A 258 LMSEAEASRRGIQPLGRI-VSWATVGV---DPKVM-GTGPIPASRKALERAGWKIGDLDLVEAN-----EAFAAQACAVN 327 (392)
T ss_dssp EEEHHHHHHHTCCCSEEE-EEEEEEEC---CGGGG-GGTHHHHHHHHHHHHTCCGGGCSEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHhcCCCccEEE-EEEEEeec---Chhhc-chhHHHHHHHHHHHcCCCHHHcCEEEec-----cccHHHHHHHH
Confidence 34455566667665 333 35554331 11111 1123679999999999999999999964 33333444467
Q ss_pred HHhcccCCCCe--e--EEeeCC-cChhHHHHHHHHHHHHHhCCCCCCeEEEEEe-e-ccceeeeecC
Q 012909 102 QIFEKYGNTDI--E--GVDSTN-ACYGGTAALFNCVNWVESASWDGRYGLVVCT-D-TAAVAMLIGP 161 (453)
Q Consensus 102 ~~Lgl~G~~~~--~--~~dv~~-aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~-d-~~AvA~Ll~~ 161 (453)
+.||+.. ..+ . ..-+++ ..++|+..+..+...++.+ +++++|+..+ - -.++|+||+.
T Consensus 328 ~~lg~~~-~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~--~~~~gl~~~~~ggG~~~a~~~e~ 391 (392)
T 2vu1_A 328 KDLGWDP-SIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR--GARKGLATLCIGGGMGVAMCIES 391 (392)
T ss_dssp HHHCCCG-GGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH--TCSEEEEEEEETTTEEEEEEEEC
T ss_pred HHcCCCc-ccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc--CCCEEEEEEecccchheEEEEEe
Confidence 8888721 111 1 111221 2234444555555556655 3478887432 2 1277887764
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.87 Score=45.66 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee--EEe--eCC-cChhHHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE--GVD--STN-ACYGGTAALFNCVNWV 135 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~--~~d--v~~-aC~gg~~AL~~A~~~v 135 (453)
...|++++|+++|++|+|||.+.+.- ........+.+.||+.. ..+. +.- +++ ..++|+..+..+...|
T Consensus 297 ~~~a~~~al~~Agl~~~dId~ve~~d-----~f~~~~~~~~~~lg~~~-~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L 370 (396)
T 4dd5_A 297 PVPATKKALEAANMTIEDIDLVEANE-----AFAAQSVAVIRDLNIDM-NKVNVNGGAIAIGHPIGCSGARILTTLLYEM 370 (396)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECC-----SBHHHHHHHHHHHTCCT-TSBSTTCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEecC-----hHHHHHHHHHHHhCCCC-CccCCCCchhhccCcHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999632 22234455677888621 1111 111 121 1233444555555556
Q ss_pred HhCCCCCCeEEEEEeecc--ceeeeec
Q 012909 136 ESASWDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 136 ~sg~~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
+.. .+++.|+..+--- ++|+||+
T Consensus 371 ~~~--~~~~gl~~~c~ggG~g~a~~~e 395 (396)
T 4dd5_A 371 KRR--DAKTGLATLCIGGGMGTTLIVK 395 (396)
T ss_dssp HHH--TCSEEEEEEEETTTEEEEEEEE
T ss_pred Hhc--CCCeEEEEEcccCCceeEEEEe
Confidence 554 3477777543332 7788875
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=90.19 E-value=1.1 Score=44.30 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHHHHHHH---HHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-------CeeEEeeC-C------
Q 012909 57 VISMSLTVV---TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-------DIEGVDST-N------ 119 (453)
Q Consensus 57 ~~~la~~Aa---~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-------~~~~~dv~-~------ 119 (453)
-..|+-.|+ .+.|+++|++|+|+|.|+.+--... ...+...+.+++|+ +. .+..||-. +
T Consensus 202 g~amaPaA~~ti~~~l~d~g~~~~d~D~ivtgdL~q~--g~~il~~l~~~~g~--~~~~~~~dcg~~iy~~~~~~~~ggs 277 (347)
T 3lma_A 202 GSAMAPAAADTIKQHLEDLGRTPDDYDLILTGDLSGV--GSPILKDLLKEEGI--NVGTKHNDCGLMIYTPDQQVFAGGS 277 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEESCHHH--HHHHHHHHHHHTTC--CCGGGEEEGGGTSSCC---------
T ss_pred cccchHHHHHHHHHHHHHhCCCHHHcCEEecCChHHH--HHHHHHHHHHHcCC--ChhHCccccceEEecCCCcccCCCC
Confidence 344554444 8899999999999999997421111 12344556666676 32 12233322 3
Q ss_pred --cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 120 --ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 120 --aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
||++.+..=. -...++.|.+ +++|+|++-..
T Consensus 278 g~~csa~v~~~~-~~~~~~~g~~--~ril~~~tGal 310 (347)
T 3lma_A 278 GCACSAVVTFAH-IFKEIEAGRL--NRVLVVATGAL 310 (347)
T ss_dssp CCCCHHHHHHHT-HHHHHHTTSC--SEEEEEEEEEC
T ss_pred ccccHHHHHHHH-HHHHHhcCcc--cEEEEEecccc
Confidence 5544443322 3345788977 99999977543
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.03 E-value=2.3 Score=42.50 Aligned_cols=90 Identities=10% Similarity=0.127 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-CeeE----EeeC--CcChhHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIEG----VDST--NACYGGTAALFNCVN 133 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~~----~dv~--~aC~gg~~AL~~A~~ 133 (453)
...|++++|+++|++|+|||.+.+.- ........+.+.||+ .. .+.. .-++ .+|+| +..+..+..
T Consensus 296 ~~~ai~~al~~agl~~~dId~ve~~d-----~fa~~~~~~~~~lg~--~~~~v~~~gg~~~~Gh~~gasG-~~~~~~~~~ 367 (395)
T 4e1l_A 296 PIPATRKALKKAGLSINDIDLIEANE-----AFAAQALAVKNELQI--DSSKLNVNGGAIALGHPIGASG-ARILVTLIY 367 (395)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEECC-----SBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCCCTTTHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEecC-----hhHHHHHHHHHHhCC--CCCCCCcCCchhhcCCcHHHHH-HHHHHHHHH
Confidence 35789999999999999999999632 223445566788886 22 1111 1112 24544 445555555
Q ss_pred HHHhCCCCCCeEEEEEeecc--ceeeeec
Q 012909 134 WVESASWDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
.++.. .+++.|+...--. +.|+||+
T Consensus 368 ~L~~~--~~~~gl~~~c~ggG~g~a~~~e 394 (395)
T 4e1l_A 368 EMQKR--KVETGLATLCIGGGQGISMVVS 394 (395)
T ss_dssp HHHHH--TCSEEEEEEESSTTEEEEEEEE
T ss_pred HHHhc--CCCEEEEEEccCCCceEEEEEe
Confidence 55554 3377776533322 7777775
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=89.86 E-value=1.6 Score=43.67 Aligned_cols=126 Identities=9% Similarity=0.087 Sum_probs=66.9
Q ss_pred echhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 23 v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
|..++-++.+|.++--...|.+...- .++.. ..-...|++++|+++|++|+|||.+.+.-... .......+
T Consensus 264 L~s~~~A~~~g~~~~a~i~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~ie~heafa-----~~~l~~~~ 334 (401)
T 1ulq_A 264 LVSDDYAKAHGLRPLARVRAIAVAGV---PPRIM-GIGPVPATRKALERAGLSFSDLGLIELNEAFA-----AQALAVLR 334 (401)
T ss_dssp EEEHHHHHHTTCCCSEEEEEEEEEEC---CGGGG-GGTHHHHHHHHHHHTTCCGGGCSEEEECCSBH-----HHHHHHHH
T ss_pred EecHHHHHHcCCCceEEEEEEEEecC---Ccccc-chhHHHHHHHHHHHcCCCHHHcCEEEEecchH-----HHHHHHHH
Confidence 44456666677665222235554321 11111 12236899999999999999999998752211 12223335
Q ss_pred HhcccCCCCeeEEe-------eCC-cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 103 IFEKYGNTDIEGVD-------STN-ACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G~~~~~~~d-------v~~-aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.||+. .+-.-+. +++ ..++|+..+..+...|+.+ +.+++|+...--- .+|+|+++
T Consensus 335 ~lg~~--~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~--~~~~gl~~~~~ggG~~~a~v~~~ 399 (401)
T 1ulq_A 335 EWSLS--MEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR--KVQFGLATMCIGVGQGIAVVVEG 399 (401)
T ss_dssp HHTCC--TTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT--TCSEEEEEEEETTTEEEEEEEEE
T ss_pred HcCCC--CCCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc--CCCEEEEEeecCCcccEEEEEEe
Confidence 57762 1111111 221 1123445555566667666 4488887643222 66777754
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.06 E-value=1.6 Score=42.40 Aligned_cols=93 Identities=9% Similarity=0.028 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-Cee-EEe-eC-CcChhHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE-GVD-ST-NACYGGTAALFNCVNW 134 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~-~~d-v~-~aC~gg~~AL~~A~~~ 134 (453)
....++.+++|+++|++++|||.++..... ..+-..+.+.||+ +. .+. .++ ++ ..+++...+|. ..
T Consensus 224 ~~~~~~i~~aL~~agl~~~did~~~~H~~~-----~~~~d~~~~~lg~--~~~~~~~~~~~~Gnt~sAs~~~~L~---~~ 293 (331)
T 2x3e_A 224 TQMSDSVRRVLDRVGWQASDLHHLVPHQAN-----TRILAAVADQLDL--PVERVVSNIAEVGNTVAASIPLALA---HG 293 (331)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCCC-----HHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHcCC--CHHHHhhhHhhhCcHHHHHHHHHHH---HH
Confidence 456678999999999999999998864322 2233457888997 32 222 112 22 23444444443 33
Q ss_pred HHhCC-CCCCeEEEEEeecc--ceeeeecC
Q 012909 135 VESAS-WDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
++.+. .+|+++|+++.-.- ..++|+.-
T Consensus 294 ~~~~~~~~G~~vll~~~G~G~~~~~~~l~~ 323 (331)
T 2x3e_A 294 LRQGILRDGGNMVLTGFGAGLTWGSVALRW 323 (331)
T ss_dssp HHTTCSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred HHhCCCCCCCEEEEEEEeHHhhheeeEEEE
Confidence 45552 26789999887653 55666644
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=88.78 E-value=2.3 Score=41.26 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-eeEEe---eC-CcChhHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IEGVD---ST-NACYGGTAALFNCVN 133 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-~~~~d---v~-~aC~gg~~AL~~A~~ 133 (453)
....++.+++|+++|++++|||.++..... ..+-..+.+.||+ +.. ..... ++ ..+++...+|. .
T Consensus 231 ~~~~~~i~~aL~~agl~~~did~v~~H~~~-----~~~~d~i~~~lg~--~~~~~~~~~~~~~Gn~~sAs~~~~L~---~ 300 (339)
T 1mzj_A 231 ADVVPAAREALEVAGLTVGDLVAFVPHQAN-----LRIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSASVALALD---R 300 (339)
T ss_dssp HHHHHHHHHHHHTTTCCGGGCSEEEECCSC-----HHHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHhCC--CccceeeehhhhcCchHHHHHHHHHH---H
Confidence 456678899999999999999998864321 1233357889998 433 21111 22 23444444443 3
Q ss_pred HHHhCC-CCCCeEEEEEeecc--ceeeeecC
Q 012909 134 WVESAS-WDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 134 ~v~sg~-~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.++.+. .+|+++|+++.-.- ..++|+.-
T Consensus 301 ~~~~g~~~~G~~vll~~~G~G~t~~~~~l~~ 331 (339)
T 1mzj_A 301 LVRSGAVPGGGPALMIGFGAGLSYAGQALLL 331 (339)
T ss_dssp HHHHTSSCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred HHHcCCCCCCCEEEEEEEchhheeEEEEEEe
Confidence 345543 26789999877653 55666643
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=88.35 E-value=2 Score=41.97 Aligned_cols=91 Identities=5% Similarity=-0.055 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee---C-CcChhHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---T-NACYGGTAALFNCVNW 134 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv---~-~aC~gg~~AL~~A~~~ 134 (453)
....++.+++|+++|++++|||.++... ..+.+-..+++.||+ +.......+ + .++++-..+|..+
T Consensus 246 ~~~~~~i~~~l~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L~~~--- 315 (345)
T 3s21_A 246 KLAQKTFVAAKQVLGWAVEELDQFVIHQ-----VSRPHTAAFVKSFGI--DPAKVMTIFGEHGNIGPASVPIVLSKL--- 315 (345)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCSEEEECC-----SCHHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeCC-----CCHHHHHHHHHHcCc--CHHHceeeHhhcCchHHHHHHHHHHHH---
Confidence 4455677899999999999999998743 223455678889998 433221222 2 2334444444433
Q ss_pred HHhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 135 VESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
++.|. .+|+++|+++.-.- ..++|+
T Consensus 316 ~~~g~~~~Gd~vll~~~G~G~t~~~~~l 343 (345)
T 3s21_A 316 KELGRLKKGDRIALLGIGSGLNCSMAEV 343 (345)
T ss_dssp HHHTCCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HHcCCCCCCCEEEEEEEChhhhheEEEE
Confidence 34442 36789998876543 444444
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.25 E-value=1.7 Score=43.45 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-eeE----EeeCC-cChhHHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IEG----VDSTN-ACYGGTAALFNCVNW 134 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-~~~----~dv~~-aC~gg~~AL~~A~~~ 134 (453)
...|++++|+++|++|+|||.+.+.- ........+.+.||+ ... +.. ..+++ ..++|+..+..+...
T Consensus 294 ~~~a~~~al~~agl~~~dId~ve~~d-----~fa~~~~~~~~~lg~--~~~~v~~~gg~~~~GH~~gasG~~~~~~~~~~ 366 (394)
T 3ss6_A 294 PAPAIRKGLEKVDWSLEDADLLEINE-----AFAAQYLAVEKELDL--DREKVNVNGSGVGLGHPIGCTGARITVSLIHE 366 (394)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECC-----SBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHcCEEEeCC-----chHHHHHHHHHHhCC--CCCCCCCCcchHhhCCcHHHHHHHHHHHHHHH
Confidence 36789999999999999999999642 222445567788887 221 111 01122 113344455555555
Q ss_pred HHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 135 VESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 135 v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
++.. ++++.|+..+--- +.|+||++
T Consensus 367 L~~~--~~~~gl~~~c~ggG~g~a~~~e~ 393 (394)
T 3ss6_A 367 LKRR--GLEKGIASLCVGGGIGVALFIEA 393 (394)
T ss_dssp HHHH--TCCEEEEEEEETTTEEEEEEEEE
T ss_pred HHhc--CCCEEEEEEccCcCceeEEEEEc
Confidence 6654 3477776533222 77787753
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=88.20 E-value=2 Score=41.56 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-eeEEee---CC-cChhHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IEGVDS---TN-ACYGGTAALFNCVN 133 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-~~~~dv---~~-aC~gg~~AL~~A~~ 133 (453)
....++++++|+++|++|+|||.++..... ..+-..+.+.||+ +.. .....+ +| .+++...+|. .
T Consensus 232 ~~~~~~i~~al~~agl~~~dId~~~~H~~~-----~~~~~~~~~~lg~--~~~~~~~~~~~~~Gnt~sAs~~~~L~---~ 301 (335)
T 1u6e_A 232 FKMGDVGRRAMDAAGVRPDQIDVFVPHQAN-----SRINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMA---E 301 (335)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCSC-----HHHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCC-----HHHHHHHHHHcCC--CchhhhhhhhhhhCcHHHHHHHHHHH---H
Confidence 455678899999999999999999865422 2233457788998 333 211112 22 3333333333 3
Q ss_pred HHHhCC-CCCCeEEEEEeecc--ceeeeec
Q 012909 134 WVESAS-WDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 134 ~v~sg~-~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
+++.+. .+|+++|+++.-.- ..++|+.
T Consensus 302 ~~~~~~~~~g~~~l~~~~G~G~t~~~~vl~ 331 (335)
T 1u6e_A 302 LLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331 (335)
T ss_dssp HHHHTSSCTTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHcCCCCCCCEEEEEEEehhheeEEEEEE
Confidence 334442 26789999877543 5555554
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=2.4 Score=40.69 Aligned_cols=89 Identities=16% Similarity=0.071 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee----C-CcChhHHHHHHHHHHH
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS----T-NACYGGTAALFNCVNW 134 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv----~-~aC~gg~~AL~~A~~~ 134 (453)
...++.+++|+++|++|+|||.++..... ..+-..+.+.||+ +.. ....+ + ..+++...+|.. +
T Consensus 219 ~~~~~i~~aL~~agl~~~did~v~~H~~~-----~~~~d~i~~~lg~--~~~-~~~~~~~~~Gn~~~As~~~~L~~---~ 287 (317)
T 1hnj_A 219 ELAHIVDETLAANNLDRSQLDWLVPHQAN-----LRIISATAKKLGM--SMD-NVVVTLDRHGNTSAASVPCALDE---A 287 (317)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEEECCSC-----HHHHHHHHHHTTC--CGG-GBCCCHHHHCBCGGGHHHHHHHH---H
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHcCC--CHH-HhHhhHhhhCcHHHHHHHHHHHH---H
Confidence 45678899999999999999998864321 1233457888887 322 12222 2 234444444433 3
Q ss_pred HHhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 135 VESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
++.+. .+|+++|+++.-.- ..++|+
T Consensus 288 ~~~~~~~~G~~vll~~~G~G~t~~~~~l 315 (317)
T 1hnj_A 288 VRDGRIKPGQLVLLEAFGGGFTWGSALV 315 (317)
T ss_dssp HHTTCSCTTCEEEEEEEETTTEEEEEEE
T ss_pred HHhCCCCCCCEEEEEEEchhheeEEEEE
Confidence 45543 26889999876643 444444
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.96 E-value=3.8 Score=40.78 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=67.0
Q ss_pred echhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 23 v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
+..++.++.+|..+--...|.+...- .+... ..-...|++++|+++|++|+|||.+.+.-.. ........+
T Consensus 250 L~s~~~A~~~g~~~~a~i~g~~~~~~---~~~~~-~~~~~~a~~~al~~agl~~~did~ve~h~~f-----~~~~~~~~~ 320 (387)
T 3goa_A 250 VMSESRARELGLKPRARIRSMAVVGC---DPSIM-GYGPVPASKLALKKAGLSASDIDVFEMNEAF-----AAQILPCIK 320 (387)
T ss_dssp EEEHHHHHHTTCCCCEEEEEEEEEEC---CTTST-TCTHHHHHHHHHHHHTCCGGGCSEEEECCSB-----HHHHHHHHH
T ss_pred EecHHHHHHcCCCccEEEEEEEEcCC---CCCcc-hHHHHHHHHHHHHHcCCCHHHcCEEEEeCcc-----hHHHHHHHH
Confidence 44455666666655322234444321 11111 1123688999999999999999999865322 123344556
Q ss_pred HhcccCCCCeeEEe-------eCC-cChhHHHHHHHHHHHHHhCCCCCCeEEEEEe--eccceeeeecC
Q 012909 103 IFEKYGNTDIEGVD-------STN-ACYGGTAALFNCVNWVESASWDGRYGLVVCT--DTAAVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G~~~~~~~d-------v~~-aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~--d~~AvA~Ll~~ 161 (453)
.||+.+. +..-+. +++ -.++|+..+..+...|+.. ++++.|+... -=.+.|+||++
T Consensus 321 ~lg~~~~-~~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~--~~~~gl~~~c~ggG~g~a~~~e~ 386 (387)
T 3goa_A 321 DLGLMEQ-IDEKINLNGGAIALGHPLGCSGARISTTLINLMERK--DAQFGLATMCIGLGQGIATVFER 386 (387)
T ss_dssp HTTCGGG-HHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT--TCSEEEEEEEETTTEEEEEEEEC
T ss_pred HhCCCcC-CCccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc--CCCEEEEEeccCcCceEEEEEEe
Confidence 6775110 111111 121 1234445555555666654 4478876322 12277888764
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=87.72 E-value=1.7 Score=41.55 Aligned_cols=92 Identities=12% Similarity=0.000 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-CeeE-Ee-eC-CcChhHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIEG-VD-ST-NACYGGTAALFNCVNW 134 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~~-~d-v~-~aC~gg~~AL~~A~~~ 134 (453)
.-..++.+++|+++|++|+|||.++..... ...-..+.+.||+ +. .++. +. ++ ..++++..+|.. .
T Consensus 212 ~~~~~~i~~al~~agl~~~did~~~~H~~~-----~~~~d~~~~~lg~--~~~~~~~~~~~~Gh~~~as~~~~L~~---~ 281 (313)
T 1zow_A 212 RIMGDASTRVVEKANLTSDDIDLFIPHQAN-----IRIMESARERLGI--SKDKMSVSVNKYGNTSAASIPLSIDQ---E 281 (313)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCSC-----HHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHhCC--CHHHHHHhHhhhCchHHHHHHHHHHH---H
Confidence 345678899999999999999998865322 2233446788887 32 2221 11 12 244444444443 3
Q ss_pred HHhCC-CCCCeEEEEEeecc--ceeeeec
Q 012909 135 VESAS-WDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
++.+. .+|+++|+++.-.- ..++|+.
T Consensus 282 ~~~~~~~~g~~vl~~~~G~G~t~~~~~l~ 310 (313)
T 1zow_A 282 LKNGKLKDDDTIVLVGFGGGLTWGAMTIK 310 (313)
T ss_dssp HHTTCCCTTCEEEEEEEETTTEEEEEEEE
T ss_pred HHcCCCCCCCEEEEEEEchhhhheEEEEE
Confidence 44443 26789998876643 4555553
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=87.69 E-value=2.5 Score=41.77 Aligned_cols=94 Identities=10% Similarity=-0.023 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWV 135 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v 135 (453)
.....++++++|+++|++++|||.++... ..+.+-..+++.||+ +.......+. ..|++...-+ .-..++
T Consensus 265 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq-----~n~~i~~~~~~~Lgl--~~ek~~~~l~~~GNtssAsipl-~L~~~~ 336 (365)
T 3gwa_A 265 LAEVPRAADRLLALAGEPRENIDCFVLHQ-----ANRFMLDALRKKMKI--PEHKFPVLMEHCGNTVSSTLPL-ALETMR 336 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECC-----CCHHHHHHHHHHHTC--CGGGSCCCCTTTCBCGGGHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcC-----CCHHHHHHHHHHhCC--CHHHHHHHHhcccchHHHHHHH-HHHHHH
Confidence 34556778999999999999999998643 233455678889998 4332222232 2333332222 223345
Q ss_pred HhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 136 ESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 136 ~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
+.|. .+|+++|+++.-.- ..++|+
T Consensus 337 ~~g~~~~Gd~vll~~fG~G~t~~~~ll 363 (365)
T 3gwa_A 337 ANGTLARGMRLMLLGFGVGYSWAGCLV 363 (365)
T ss_dssp HTTCCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HcCCCCCCCEEEEEEEehhheeEEEEE
Confidence 5553 36789988875442 444443
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=87.31 E-value=2.3 Score=40.90 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-Cee-EEe-eC-CcChhHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIE-GVD-ST-NACYGGTAALFNCVNW 134 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~-~~d-v~-~aC~gg~~AL~~A~~~ 134 (453)
.-..++.+++|+++|++|+|||.++..... ..+-..+.+.||+ +. .+. .+. ++ ..++++..+|.. .
T Consensus 220 ~~~~~~i~~al~~agl~~~did~~~~H~~~-----~~~~d~~~~~lg~--~~~~~~~~~~~~Gh~~~As~~~~l~~---~ 289 (322)
T 1ub7_A 220 RVMNTATLEAIEKAGLTPEDIRLFVPHQAN-----LRIIDAARERLGL--PWERVAVNVDRYGNTSTASIPLALKE---A 289 (322)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEECCSC-----HHHHHHHHHTTTC--CGGGBCCCHHHHCBCGGGHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHcCC--CHHHHHHHHHhhCcHHHHHHHHHHHH---H
Confidence 456678999999999999999998864422 1223357788887 32 222 111 12 233444444433 3
Q ss_pred HHhCC-CCCCeEEEEEeecc--ceeeeec
Q 012909 135 VESAS-WDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
++.+. .+|+++|+++.-.- .+++|+.
T Consensus 290 l~~g~~~~g~~~l~~~~G~G~~~~~~vl~ 318 (322)
T 1ub7_A 290 VDAGRIREGDHVLLVSFGAGLTWAAAVLT 318 (322)
T ss_dssp HHHTSSCTTCEEEEEEEETTTEEEEEEEE
T ss_pred HHhCCCCCCCEEEEEEEChhheeEEEEEE
Confidence 45553 26789999887654 5555654
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=1.4 Score=43.68 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee---C-CcChhHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---T-NACYGGTAALFNCVN 133 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv---~-~aC~gg~~AL~~A~~ 133 (453)
.....++++++|+++|++++|||.++...- .+.+-..+++.||+ +.......+ + .++++-..+|..+..
T Consensus 253 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq~-----n~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sAsi~l~L~~~~~ 325 (359)
T 3h78_A 253 SQTLVRIAGEMLAAHELTLDDIDHVICHQP-----NLRILDAVQEQLGI--PQHKFAVTVDRLGNMASASTPVTLAMFWP 325 (359)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCSEEEECCS-----CHHHHHHHHHHHTC--CGGGBCCCHHHHCBCGGGHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEECCC-----CHHHHHHHHHHhCc--CHHHhhhhhhcccchHHHHHHHHHHHHHH
Confidence 344567889999999999999999886442 23455678889998 433222222 2 244444455554443
Q ss_pred HHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 134 WVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
- ..+|+++|+++.-.- ..++|+.-
T Consensus 326 ~----l~~Gd~vll~~fG~G~t~~~~ll~~ 351 (359)
T 3h78_A 326 D----IQPGQRVLVLTYGSGATWGAALYRK 351 (359)
T ss_dssp G----SCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred h----CCCCCEEEEEEEchhhhheeeeEEe
Confidence 2 237789988875543 56666653
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.08 E-value=1.8 Score=41.33 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCC-CeeE-Ee-eC-CcChhHHHHHHHHHHHH
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNT-DIEG-VD-ST-NACYGGTAALFNCVNWV 135 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~-~~~~-~d-v~-~aC~gg~~AL~~A~~~v 135 (453)
...++.+++|+++|++|+|||.++..... ...-..+.+.||+ +. .+.. .. ++ ..++++..+|..+ +
T Consensus 211 ~~~~~i~~al~~agl~~~did~~~~H~~~-----~~~~~~~~~~lg~--~~~~~~~~~~~~Gh~~~As~~~~L~~~---~ 280 (309)
T 2ebd_A 211 SMEEVCREVLEKAGVKPEEVSLVIPHQAN-----VRIINALAEKLNI--PKEKVFVNIQKYGNTSAASIPIALHEA---I 280 (309)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECCSC-----HHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEcCCC-----HHHHHHHHHHhCC--CHHHhhhhHhhhcchHHHHHHHHHHHH---H
Confidence 45678999999999999999998864421 1223357788887 32 2221 11 11 2444444444433 4
Q ss_pred HhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 136 ESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 136 ~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
+.+. .+|+++|+++.-.- ..++|+
T Consensus 281 ~~g~~~~G~~~l~~~~G~G~~~~~~~l 307 (309)
T 2ebd_A 281 KEGKVKRGDLILMTAMGGGLTWGAVLL 307 (309)
T ss_dssp HTTCCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HcCCCCCCCEEEEEEEchhhhhEEEEE
Confidence 4443 26789998876542 444443
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=86.74 E-value=2 Score=43.04 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=66.3
Q ss_pred chhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 24 LQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 24 ~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
..++-++.+|..+ .++ .|.+.... .++.. ..-...|++++|+++|++|+|||.+.+.- ........+.+
T Consensus 264 ~s~~~A~~~g~~~~a~i-~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~ie~~d-----~f~~~~l~~~~ 333 (397)
T 1wl4_A 264 MKKSEADKRGLTPLARI-VSWSQVGV---EPSIM-GIGPIPAIKQAVTKAGWSLEDVDIFEINE-----AFAAVSAAIVK 333 (397)
T ss_dssp EEHHHHHHTTCCCSEEE-EEEEEEEC---CGGGG-GGTHHHHHHHHHHHHTCCGGGCCEEEECC-----SBHHHHHHHHH
T ss_pred ecHHHHHHcCCCccEEE-EEEEEeec---Chhhc-cchHHHHHHHHHHHcCCCHHHCCEEEEec-----ccHHHHHHHHH
Confidence 3445555566555 233 34444331 11111 12236899999999999999999999542 22233445778
Q ss_pred HhcccC-CCCee--EEeeCC--cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 103 IFEKYG-NTDIE--GVDSTN--ACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G-~~~~~--~~dv~~--aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
.||+.. +-++. ..-+++ ++ +|+..+..+...|+.. +++++|+...-- .+.|+||+.
T Consensus 334 ~lg~~~~~vn~~gg~~~~GHp~gA-sG~~~~~~~~~~L~~~--~~~~gl~~~~~ggG~~~a~~~e~ 396 (397)
T 1wl4_A 334 ELGLNPEKVNIEGGAIALGHPLGA-SGCRILVTLLHTLERM--GRSRGVAALCIGGGMGIAMCVQR 396 (397)
T ss_dssp HHTCCGGGBSTTCCHHHHCCCHHH-HHHHHHHHHHHHHHHH--TCCEEEEEEEETTTEEEEEEEEE
T ss_pred HcCCCCcCcCCCcCccccCCChhh-hHHHHHHHHHHHHhhc--CCCEEEEEEecccchheEEEEEe
Confidence 888611 00111 111111 33 3444455555556654 347888763322 277888764
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=86.25 E-value=2.3 Score=41.25 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWV 135 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v 135 (453)
+....++++++|+++|++++|||.++...- .+.+-..+++.||+ +.......+. ..|++...-+.+ ..++
T Consensus 223 ~~~~~~~i~~~l~~~gl~~~did~~v~Hq~-----~~~i~~~~~~~lgl--~~ek~~~~l~~~GNt~sasi~~~L-~~~~ 294 (323)
T 3il3_A 223 VRELSNVVEETLLANNLDKKDLDWLVPHQA-----NLRIITATAKKLEM--DMSQVVVTLDKYANNSAATVPVAL-DEAI 294 (323)
T ss_dssp HHHHHHHHHHHHHTTTCCTTTCCEEEECCS-----CHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHcCc--CHHHhhccHhhcCchHHHHHHHHH-HHHH
Confidence 344557788999999999999999986542 23455678889998 4332222332 233333322222 2334
Q ss_pred HhCC-CCCCeEEEEEeec
Q 012909 136 ESAS-WDGRYGLVVCTDT 152 (453)
Q Consensus 136 ~sg~-~~~~~aLVv~~d~ 152 (453)
+.|. .+|+++|+++.-.
T Consensus 295 ~~g~~~~Gd~vll~~~G~ 312 (323)
T 3il3_A 295 RDGRIQRGQLLLLEAFGG 312 (323)
T ss_dssp HTTSSCTTCEEEEEEEET
T ss_pred HcCCCCCCCEEEEEEEeh
Confidence 4543 3678998887543
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=85.71 E-value=2.3 Score=41.31 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC--CcChhHHHHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST--NACYGGTAALFNCVNWVE 136 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~--~aC~gg~~AL~~A~~~v~ 136 (453)
....++.+++|+++|++++|||.++.... .+.+-..+++.||+ +..-....+. ..|++... +..-..+++
T Consensus 234 ~~~~~~i~~~l~~~gl~~~did~~~~Hq~-----~~~i~~~~~~~lgl--~~~~~~~~l~~~GNt~sasi-~~~L~~~~~ 305 (333)
T 4dfe_A 234 NVLEKVAVEALEKANLSAEQIDWLIPHQA-----NIRIMQSTCRKLGL--PQERMIVTVGEHGNTSAASI-PLALDVAVR 305 (333)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCS-----CHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEcCC-----CHHHHHHHHHHhCC--CHHHhhhhHHhcCchHHHHH-HHHHHHHHH
Confidence 55567788999999999999999986542 23455678889998 4332222222 23333222 222233455
Q ss_pred hCC-CCCCeEEEEEeec
Q 012909 137 SAS-WDGRYGLVVCTDT 152 (453)
Q Consensus 137 sg~-~~~~~aLVv~~d~ 152 (453)
.|. .+|+++|+++.-.
T Consensus 306 ~g~~~~Gd~vll~~~G~ 322 (333)
T 4dfe_A 306 DGRIKRGQNVLIEGVGG 322 (333)
T ss_dssp TTCSCTTCEEEEEEEET
T ss_pred cCCCCCCCEEEEEEEch
Confidence 553 2678888887543
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=85.52 E-value=3.9 Score=40.74 Aligned_cols=128 Identities=9% Similarity=0.070 Sum_probs=66.1
Q ss_pred echhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHH
Q 012909 23 VLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQ 102 (453)
Q Consensus 23 v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~ 102 (453)
|..++-++.+|..+--...|.+.... .++.. ..-...|++++|+++|++|+|||.+.+.-. .......+.+
T Consensus 253 L~s~~~A~~~g~~~~a~I~g~~~~~~---~p~~~-~~~~~~a~~~al~~Agl~~~dId~ve~~d~-----f~~~~~~~~~ 323 (390)
T 1wdk_C 253 VMSAQRAKDLGLEPLAVIRSMAVAGV---DPAIM-GYGPVPATQKALKRAGLNMADIDFIELNEA-----FAAQALPVLK 323 (390)
T ss_dssp EEEHHHHHHTTCCCSEEEEEEEEEEC---CGGGG-GGTHHHHHHHHHHHHTCCGGGCCEEEECCS-----BHHHHHHHHH
T ss_pred EecHHHHHHcCCCccEEEEEEEEecc---Chhhc-chhHHHHHHHHHHHcCCChhhCcEEEeccC-----CHHHHHHHHH
Confidence 34445555666555212234444331 11111 112368999999999999999999986422 1123445567
Q ss_pred HhcccC----CCCee--EEeeCC-cChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec--cceeeeecC
Q 012909 103 IFEKYG----NTDIE--GVDSTN-ACYGGTAALFNCVNWVESASWDGRYGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 103 ~Lgl~G----~~~~~--~~dv~~-aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~--~AvA~Ll~~ 161 (453)
.||+.. +-++. ..-+++ ..++|+..+..+...|+.+ ++++.|+...-- .++|+||+.
T Consensus 324 ~lg~~~~~~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~--~~~~gl~~~~~ggG~~~a~~~~~ 389 (390)
T 1wdk_C 324 DLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN--GGTFGLSTMCIGLGQGIATVFER 389 (390)
T ss_dssp HTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT--TCSEEEEEEEETTTEEEEEEEEC
T ss_pred HcCCCCCCCCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc--CCCEEEEEecccchheEEEEEEe
Confidence 777610 00110 111121 1233444455555566665 457887753222 277888764
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=85.10 E-value=2.3 Score=41.81 Aligned_cols=95 Identities=7% Similarity=-0.037 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee---C-CcChhHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---T-NACYGGTAALFNCVN 133 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv---~-~aC~gg~~AL~~A~~ 133 (453)
.....++++++|+++|++++|||.++... ..+.+-..+++.||+ +..-....+ + .++++-..+|..+..
T Consensus 243 ~~~~~~~i~~~l~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~Lgl--~~ek~~~~l~~~GNt~sasi~~~L~~~~~ 315 (354)
T 4efi_A 243 LNAVPKLVSRTLDIAGRDKDSYDAFLFHQ-----ANLFMLKHLAKKAGL--PAERVPVNIGEYGNTSCASIPLLITTELK 315 (354)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECC-----CCHHHHHHHHHHTTC--CGGGSCCCHHHHCBCGGGHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEeCC-----CCHHHHHHHHHHhCc--CHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Confidence 45566778999999999999999998754 233455678899998 332222222 2 355555556655533
Q ss_pred --HHHhCCCCCCeEEEEEeecc--ceeeeecCCC
Q 012909 134 --WVESASWDGRYGLVVCTDTA--AVAMLIGPDA 163 (453)
Q Consensus 134 --~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~~~ 163 (453)
.++ +|+++|+++.-.- ..++|+.-.+
T Consensus 316 ~g~~~----~Gd~vll~~fG~G~t~~~~ll~~~~ 345 (354)
T 4efi_A 316 DRLKE----ETLQLGMFGFGVGYSWASAALAVGP 345 (354)
T ss_dssp HHHHH----SCEEEEEEEEETTTEEEEEEEEECC
T ss_pred hCCCC----CCCEEEEEEEchhhhheeeEEEECC
Confidence 333 4578888876653 6677776554
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=84.53 E-value=1.8 Score=43.11 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-eeE----E-eeCCcChhHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-IEG----V-DSTNACYGGTAALFNCV 132 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-~~~----~-dv~~aC~gg~~AL~~A~ 132 (453)
+-..++.+++|+++|++++|||.++.... ...+-..+.+.||+ +.. +.. + +++| |++.. .+..-.
T Consensus 287 ~~~~~~i~~aL~~agl~~~dId~~~~H~~-----~~~i~d~~~~~lgl--~~~k~~~s~~~~~~~GN-t~sAs-i~~~L~ 357 (393)
T 1ted_A 287 SGVAPVVTEMLWDNGLQISDIDLWAIHPG-----GPKIIEQSVRSLGI--SAELAAQSWDVLARFGN-MLSVS-LIFVLE 357 (393)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSCEEECCS-----CHHHHHHHHHHHTC--CGGGGHHHHHHHHHHCB-CTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHhHCCEEEECCC-----cHHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC-chHhH-HHHHHH
Confidence 34456779999999999999999887432 22334567788998 332 211 1 2233 32222 222233
Q ss_pred HHHHhCCC--CCCeEEEEEeecc--ceeeee
Q 012909 133 NWVESASW--DGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 133 ~~v~sg~~--~~~~aLVv~~d~~--AvA~Ll 159 (453)
.+++.+.. +|+++|+++.-.- ..++|+
T Consensus 358 ~~~~~g~~~~~Gd~vll~~~G~G~t~~~~~l 388 (393)
T 1ted_A 358 TMVQQAESAKAISTGVAFAFGPGVTVEGMLF 388 (393)
T ss_dssp HHHHSCSSSSSSEEEEEEEEETTTEEEEEEE
T ss_pred HHHhcCccCCCCCeEEEEEeccchhhhhhhe
Confidence 44566653 6789998876553 445554
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=82.08 E-value=3.3 Score=40.37 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEE-ee---CC-cChhHHHHHHHHHH
Q 012909 59 SMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGV-DS---TN-ACYGGTAALFNCVN 133 (453)
Q Consensus 59 ~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~-dv---~~-aC~gg~~AL~~A~~ 133 (453)
....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +...... .+ +| ++++-..+|..+
T Consensus 249 ~~~~~~i~~~L~~~gl~~~did~~v~Hq-----~~~~i~~~~~~~Lgl--~~~~~~~~~l~~~GNtssasi~~~L~~~-- 319 (350)
T 4ewp_A 249 WSMAKVAREALDAAGVEPEDLAAFIPHQ-----ANMRIIDEFAKQLKL--PESVVVARDIADAGNTSAASIPLAMHRL-- 319 (350)
T ss_dssp HTHHHHHHHHHHHHTCCGGGEEEEEECC-----SCHHHHHHHHHHTTC--CTTSEECCTHHHHCBCGGGHHHHHHHHH--
T ss_pred HhhhHHHHHHHHhhcCChhHhceEEecC-----CCHHHHHHHHHHcCc--ChHhEEecccccccchHHHHHHHHHHHH--
Confidence 3455788999999999999999998643 234455678899998 4433221 22 22 333334444333
Q ss_pred HHHhCC-CCCCeEEEEEee
Q 012909 134 WVESAS-WDGRYGLVVCTD 151 (453)
Q Consensus 134 ~v~sg~-~~~~~aLVv~~d 151 (453)
++.|. .+|+++|+++.-
T Consensus 320 -~~~g~~~~Gd~vll~~fG 337 (350)
T 4ewp_A 320 -LEENPELSGGLALQIGFG 337 (350)
T ss_dssp -HHHCGGGTTSEEEEEEEE
T ss_pred -HHhCCCCCcCEEEEEEEc
Confidence 34442 267899888654
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=81.38 E-value=3.1 Score=41.00 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee----CC-cChhHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS----TN-ACYGGTAALFNCV 132 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv----~~-aC~gg~~AL~~A~ 132 (453)
+....++++++|+++|++++|||.+++....... .. .+.+.||+ +......++ +| ++++-..+|..+
T Consensus 237 ~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~----~~~~~lgl--~~ek~~~~~~~~~GNt~aAsipl~L~~~- 308 (357)
T 3s3l_A 237 IDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GH----ELHDLLGL--PDERTSWAYGRTTGHVGAGDQYAGLAHL- 308 (357)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SC----CHHHHHTS--CGGGBTHHHHHHHCBCTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HH----HHHHHcCC--CHHHhHHHhccccccchHhHHHHHHHHH-
Confidence 4456778999999999999999999963333322 32 35678898 433222233 21 333444444443
Q ss_pred HHHHhCC-CCCCeEEEEEeecc--ceeeeecCC
Q 012909 133 NWVESAS-WDGRYGLVVCTDTA--AVAMLIGPD 162 (453)
Q Consensus 133 ~~v~sg~-~~~~~aLVv~~d~~--AvA~Ll~~~ 162 (453)
++.|. .+|+++|+++.-.- ..|+|+.-.
T Consensus 309 --~~~g~l~~Gd~vll~~fG~G~t~~a~ll~~~ 339 (357)
T 3s3l_A 309 --VENALVQPGDRVLLFGGGAGYTCTAAVVEIL 339 (357)
T ss_dssp --HHTTCCCTTCEEEEECCBTTTEEEEEEEEEC
T ss_pred --HHcCCCCCCCEEEEEEEchhhhheeeeEEec
Confidence 44443 26789988876643 566666543
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=7.2 Score=38.73 Aligned_cols=74 Identities=9% Similarity=0.164 Sum_probs=44.6
Q ss_pred echhHHhhhhCCCc-CeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHH
Q 012909 23 VLQEALEVHDGVSK-GKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLM 101 (453)
Q Consensus 23 v~~~~l~~~~g~~~-~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~ 101 (453)
+..++-++.+|.++ .++ .|.+.... ++.. ...-...|++++|+++|++|+|||.+.+. |.....+....
T Consensus 263 L~s~~~A~~~g~~~~a~I-~g~~~~~~---~p~~-~~~~~~~a~~~al~~Agl~~~dId~ie~~-----D~f~~~~l~~~ 332 (395)
T 2ib8_A 263 LMTADAAKRLNVTPLARI-VAFADAAV---EPID-FPIAPVYAASMVLKDVGLKKEDIAMWEVN-----EAFSLVVLANI 332 (395)
T ss_dssp EEEHHHHHHTTCCCCEEE-EEEEEEEC---CGGG-GGGHHHHHHHHHHHHHTCCGGGEEEEEEC-----CSBHHHHHHHH
T ss_pred EecHHHHHhcCCCccEEE-EEEEEecc---Chhh-ccccHHHHHHHHHHHcCCCHHHcCEEEEc-----cccHHHHHHHH
Confidence 45566677778766 344 45554321 2211 11224679999999999999999999853 22222333334
Q ss_pred HHhcc
Q 012909 102 QIFEK 106 (453)
Q Consensus 102 ~~Lgl 106 (453)
+.||+
T Consensus 333 e~lg~ 337 (395)
T 2ib8_A 333 KMLEI 337 (395)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 45886
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.35 E-value=6.1 Score=39.77 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeE------EeeCC--cChhHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEG------VDSTN--ACYGGTAALFNCV 132 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~------~dv~~--aC~gg~~AL~~A~ 132 (453)
...|++++|+++|++|+|||.+.+...+ +.......+.||+ . ..+. .-+++ ||+ |+..+..+.
T Consensus 315 ~~~a~~~al~~Agl~~~dId~vE~h~af-----~~~~~~~~~~lg~--~-~~~vN~~GG~~a~GHp~GAs-G~~~~~~~~ 385 (418)
T 2iik_A 315 PAYAIPVALQKAGLTVSDVDIFEINEAF-----ASQAAYCVEKLRL--P-PEKVNPLGGAVALGHPLGCT-GARQVITLL 385 (418)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEECCSB-----HHHHHHHHHHHTC--C-GGGBCTTCCHHHHCCCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHCCeeeeeccc-----hHHHHHHHHHcCC--C-ccccCCCCCeeeecCChhhh-HHHHHHHHH
Confidence 3569999999999999999999876422 2233444567776 2 1111 11221 333 333444444
Q ss_pred HHHHhCCCCCC-eEEEEEeec--cceeeeecC
Q 012909 133 NWVESASWDGR-YGLVVCTDT--AAVAMLIGP 161 (453)
Q Consensus 133 ~~v~sg~~~~~-~aLVv~~d~--~AvA~Ll~~ 161 (453)
..|+.. .++ +.|+..+-- .+.|+||+.
T Consensus 386 ~~L~~~--~~~~~gl~~~c~ggG~g~a~~~e~ 415 (418)
T 2iik_A 386 NELKRR--GKRAYGVVSMCIGTGMGAAAVFEY 415 (418)
T ss_dssp HHHHHH--TSCEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHhc--CCCeeeEEEEeeccchhheEEEec
Confidence 555543 235 555543322 277888864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 453 | ||||
| d1xpma2 | 221 | c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co | 1e-65 | |
| d1xpma1 | 166 | c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA | 2e-23 | |
| d1u6ea1 | 184 | c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa | 2e-08 | |
| d1teda_ | 372 | c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacte | 3e-07 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 208 bits (530), Expect = 1e-65
Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 55/275 (20%)
Query: 165 IAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGR 224
+A ++ YDF++P +YP+VDG LS+ Y+ + + + ++ K
Sbjct: 2 LALNED-AVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK---- 55
Query: 225 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQ 284
S+ D FH P+ K+ +K+ + N DE +E+L
Sbjct: 56 --SLADFASLCFHVPFTKMGKKALESIIDNA--------DETTQERLRS----------- 94
Query: 285 SRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIM 344
+ + + VGN+YT SLY + SLL G+ + +
Sbjct: 95 ------------------GYEDAVDYNRYVGNIYTGSLYLSLISLLE-NRDLQAGETIGL 135
Query: 345 FSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRY 404
FSYGSG +S L EG++ + + L R E + + K R+
Sbjct: 136 FSYGSGSVGEFYSATLVEGYK-----DHLDQAAHKALLNNRTEVSVDAYETFFK----RF 186
Query: 405 GAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
+F +D+ YL+ +++ R ++ +
Sbjct: 187 DDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPE 221
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Score = 94.1 bits (233), Expect = 2e-23
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 21/169 (12%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128
+ IG + V +E+ +D +K+ + + + ACY T A+
Sbjct: 62 ITDEDKKK--IGMVIVATESAVDAAKAAAVQIHNLLGIQPF--ARCFEMKEACYAATPAI 117
Query: 129 FNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPD 162
+++ + LV+ TDTA AVAM+I +
Sbjct: 118 QLAKDYLA--TRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHN 164
|
| >d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.2 bits (124), Expect = 2e-08
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 23/175 (13%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
++VG+L++ Y P V + + H S G F ++ E SM+
Sbjct: 10 ARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEAC 69
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
L + I + V + T ++ + G I G D + G
Sbjct: 70 RRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVA---ASLGAKGILGFDLSAGAAGFG 126
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDT------------------AAVAMLIGPD 162
AL + + LVV T+ A A+++G
Sbjct: 127 YALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRGNCFIFADGAAAVVVGET 179
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 372 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.8 bits (118), Expect = 3e-07
Identities = 39/322 (12%), Positives = 81/322 (25%), Gaps = 70/322 (21%)
Query: 54 VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE 113
E + +++ V L +IG L + + T + +
Sbjct: 89 YEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGV--DVAIVKELGLSPSISR 146
Query: 114 GVDSTNACYGGTAALFNCVNWVE---------------------SASWDGRYGLVVCTDT 152
V + C AL N+V + + + D
Sbjct: 147 VVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDG 206
Query: 153 AAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK 212
A ++ E S + V ++ +
Sbjct: 207 CAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFS 266
Query: 213 YFCQKFEKLEGRQ-FSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKL 271
++ + D+D + H K++++S L I+ E
Sbjct: 267 GVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSL-------------GISAELA 313
Query: 272 APYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLH 331
A S D + + GNM + SL +++
Sbjct: 314 AQ-----------SWD----------------------VLARFGNMLSVSLIFVLETMVQ 340
Query: 332 EKHSSLEGKRVIMFSYGSGLTA 353
+ S+ + F++G G+T
Sbjct: 341 QAESAKAISTGVAFAFGPGVTV 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1xpma2 | 221 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.96 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.96 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 99.96 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 99.95 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.95 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 99.88 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.87 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.75 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 99.74 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.74 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.72 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 99.66 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 99.5 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 99.49 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 99.49 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.95 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.94 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.77 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.67 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 98.49 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 98.4 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 98.11 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 97.91 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.91 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 97.73 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 96.9 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 96.12 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 95.99 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 95.07 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 94.89 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 94.55 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 91.93 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 89.27 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 88.59 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 85.74 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 85.24 |
| >d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.4e-50 Score=375.29 Aligned_cols=219 Identities=24% Similarity=0.442 Sum_probs=194.5
Q ss_pred eeccCceeeeccccccccccCCCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHH
Q 012909 166 AFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQ 245 (453)
Q Consensus 166 ~~~~~~~~~~~~~~~df~~p~~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ 245 (453)
++++ ..++|+.+++|||||+ .+++|+|||++|+.||++++++|++.|+++.+ .+++|||++|||+||+||++
T Consensus 3 ~~~~-~~~~y~~~~~DF~rP~-~~~~pvvDG~~S~~~Yl~~l~~~~~~~~~~~g------~~~~dfd~~~fH~P~~km~~ 74 (221)
T d1xpma2 3 ALNE-DAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSWNEYAKRQG------KSLADFASLCFHVPFTKMGK 74 (221)
T ss_dssp EECS-CCEEEECCCCSEECBT-TCSSCEECHHHHHHHHHHHHHHHHHHHHHHHT------CCGGGCSEEEECCSSHHHHH
T ss_pred EEeC-CCEeeeccCccccCCC-CCCCCeECCcchHHHHHHHHHHHHHHHHHHcC------CChhhhheEEeecCchhhHH
Confidence 4555 5789999999999998 67899999999999999999999999998874 78899999999999999999
Q ss_pred HHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHH
Q 012909 246 KSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAA 325 (453)
Q Consensus 246 ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~ 325 (453)
|++++++.+. ....++.|+++++|++.+++++|||||||+|++
T Consensus 75 ka~~~l~~~~-------------------------------------~~~~~~~~~~~~~~s~~~~~~iGN~YTaSlyl~ 117 (221)
T d1xpma2 75 KALESIIDNA-------------------------------------DETTQERLRSGYEDAVDYNRYVGNIYTGSLYLS 117 (221)
T ss_dssp HHHHTTGGGS-------------------------------------CHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHH
T ss_pred HHHHHHHhcc-------------------------------------chhhHHHHHHhhhhHHHHHHhcCCcchHHHHHH
Confidence 9999886421 012467788899999999999999999999999
Q ss_pred HHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEecCCCCCchhhhhhcCChHHHhccCccCCHHHHHHHHHHHHHhcC
Q 012909 326 FASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYG 405 (453)
Q Consensus 326 L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~r~~~~~~~y~~~~~~r~~~~~ 405 (453)
|+++|++ +.+++|+||+|||||||+++++|+++|++ ++++++...++.++|++|+.+++++|+++++.+.
T Consensus 118 L~Sll~~-~~~~~G~rIglfSYGSG~~ae~fs~~V~~-----~~~~~~~~~~l~~~L~~R~~l~~~~Ye~~~~~~~---- 187 (221)
T d1xpma2 118 LISLLEN-RDLQAGETIGLFSYGSGSVGEFYSATLVE-----GYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFD---- 187 (221)
T ss_dssp HHHHHHH-SCCCTTCEEEEEEEETTTEEEEEEEEECT-----TGGGGCCHHHHHHHHHTCEECCHHHHHHHHHHHH----
T ss_pred HHhhhcc-ccCCCCCEEEEEEecCCcceeEEEEEEcc-----cHHHHHhhccHHHHHhCCccCCHHHHHHHHHhcc----
Confidence 9999998 67789999999999999999999999999 8999999999999999999999999999997543
Q ss_pred CCCCccCCCCCCcCCCcEEEEeeCCCcceEeeeec
Q 012909 406 AKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKKE 440 (453)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~R~Y~~~~ 440 (453)
..++.|..+.....+|+|||++|++ ++|+|++++
T Consensus 188 ~~~~~~~~~~~~~~~g~~~L~~I~~-~~R~Y~r~e 221 (221)
T d1xpma2 188 DVEFDEEQDAVHEDRHIFYLSNIEN-NVREYHRPE 221 (221)
T ss_dssp TTCCCTTTTTGGGGTTSCEEEEEET-TEEEEECCT
T ss_pred CCCCCCccccccCCCccEEEEEEcC-CeEEEEecC
Confidence 3567777777778899999999999 678898864
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.1e-41 Score=338.78 Aligned_cols=298 Identities=17% Similarity=0.178 Sum_probs=219.7
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCC---Cc---Cee-----eEcccceEEeccCC---------------------C
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGV---SK---GKY-----TVGLGQDCMAFCSE---------------------V 54 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~---~~---~k~-----~~Gig~r~~av~~~---------------------~ 54 (453)
....|.++++|+|++.|+|+|+++..+. ++ +|+ ++||.+|+++..+. +
T Consensus 10 ~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 89 (372)
T d1teda_ 10 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY 89 (372)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred ceEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHH
Confidence 4567999999999999999999988632 22 222 36999999864321 2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHH
Q 012909 55 EDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVN 133 (453)
Q Consensus 55 ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~ 133 (453)
|++.+|+++|+++||+++|++|+|||+||++|+++ +..|+++++|+++||+ .+.+..+++. .||+|++.||++|.+
T Consensus 90 e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~-~~~P~~a~~v~~~LGl--~~~~~~~~~~~~gC~g~~~aL~~A~~ 166 (372)
T d1teda_ 90 EHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGL--SPSISRVVVNFMGCAAAMNALGTATN 166 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTC--CTTCEEEEEESCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCC-CCCchHHHHHHhhhcc--CCceeEeeccccCccHHHHHHHHHHH
Confidence 46789999999999999999999999999999874 6689999999999999 6778888885 599999999999999
Q ss_pred HHHhCCCCCCeEEEEEeecc----------------------ceeeeecCCCCc-eeccC---ceeeecccc---ccccc
Q 012909 134 WVESASWDGRYGLVVCTDTA----------------------AVAMLIGPDAPI-AFESK---LRGSHMSHA---YDFYK 184 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~----------------------AvA~Ll~~~~~l-~~~~~---~~~~~~~~~---~df~~ 184 (453)
+|++|. .++||||++|++ |+|+||++++.. .+... ..+.+.... .+.+.
T Consensus 167 ~l~sg~--~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (372)
T d1teda_ 167 YVRAHP--AMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIV 244 (372)
T ss_dssp HHHHST--TCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTSEE
T ss_pred HHhcCC--CccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccccccCCCccccc
Confidence 999994 599999999964 899999877541 11111 111211111 11110
Q ss_pred cC-CCCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCch
Q 012909 185 PN-LASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSV 263 (453)
Q Consensus 185 p~-~~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~ 263 (453)
.. ....+..++++.......+.+..+++.+++ +++++++|||+|++||++.+|++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~------~~gl~~~did~~i~Hq~~~~i~~~i~--------------- 303 (372)
T d1teda_ 245 LGVNHNGITCELSENLPGYIFSGVAPVVTEMLW------DNGLQISDIDLWAIHPGGPKIIEQSV--------------- 303 (372)
T ss_dssp EEEETTEEEEEECTTHHHHHHHHHHHHHHHHHH------HTTCCGGGCSCEEECCSCHHHHHHHH---------------
T ss_pred cCCCCCcceeechHHHHHHHHHHHHHHHHHHHH------hcCCCHHHhhhhhccCccHHHHHHHH---------------
Confidence 00 011234456665544334444444454444 44699999999999999999988733
Q ss_pred hhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCC-CCEE
Q 012909 264 DEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLE-GKRV 342 (453)
Q Consensus 264 ~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~-Gd~i 342 (453)
+.+|++.++ ... +....+++|||+|||+|++|.+++++ ++..+ |+++
T Consensus 304 ---------~~Lgl~~ek---------~~~-------------s~~~l~~~GN~~sasip~~L~~~l~~-g~~~~g~d~v 351 (372)
T d1teda_ 304 ---------RSLGISAEL---------AAQ-------------SWDVLARFGNMLSVSLIFVLETMVQQ-AESAKAISTG 351 (372)
T ss_dssp ---------HHHTCCGGG---------GHH-------------HHHHHHHHCBCTHHHHHHHHHHHHHS-CSSSSSSEEE
T ss_pred ---------HHcCCCHHH---------hhh-------------hHHHHhccCCcHHHHHHHHHHHHHHh-CCCCCCCCEE
Confidence 445777762 211 12233789999999999999999998 66655 4899
Q ss_pred EEEEecchhhheeeEEEEec
Q 012909 343 IMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 343 ll~syGsG~~~~~~~l~~~~ 362 (453)
++++||+|++|+++++++..
T Consensus 352 ll~~fG~G~s~~~~ll~~~~ 371 (372)
T d1teda_ 352 VAFAFGPGVTVEGMLFDIIR 371 (372)
T ss_dssp EEEEEETTTEEEEEEEEECC
T ss_pred EEEEEcHHHhHHHHhheeec
Confidence 99999999999999999853
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.5e-29 Score=226.31 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=138.7
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEc
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGS 86 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t 86 (453)
|..+|.++|.|+|+++++++|+++..|.+++|+...+|.+++.++.++++..+|+++|++++|++++++|++||+||++|
T Consensus 1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~Aa~~al~~a~~~~~~Id~li~~s 80 (174)
T d1hnja1 1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVAT 80 (174)
T ss_dssp CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEEC
T ss_pred CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceeeecCCCccchHHHHHHHHHhhhhcccccccccEEEEec
Confidence 56899999999999999999999999999998854344444445689999999999999999999999999999999999
Q ss_pred ccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc-------------
Q 012909 87 ETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA------------- 153 (453)
Q Consensus 87 ~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~------------- 153 (453)
+++++..|+.+.+||+.||+ +++.+||++++|+|++.||++|..++++|.. ++||||++|+.
T Consensus 81 ~~~~~~~P~~a~~v~~~Lgl---~~~~~~di~~~C~g~~~al~~A~~~i~sg~~--~~~Lvv~~e~~S~~~~~~d~~~~~ 155 (174)
T d1hnja1 81 TSATHAFPSAACQIQSMLGI---KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTDRGTII 155 (174)
T ss_dssp SCCSCSSSCHHHHHHHHHTC---CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTCHHHHT
T ss_pred CCccccccchhhhhhhccCC---CchhhhhhhhhhccHHHHHHHHHHHHhcCCc--ceeEEEeeehhhcccCCCCCCeEE
Confidence 99999999999999999998 6899999999999999999999999999965 99999999986
Q ss_pred -----ceeeeecCCC
Q 012909 154 -----AVAMLIGPDA 163 (453)
Q Consensus 154 -----AvA~Ll~~~~ 163 (453)
|+|+||++++
T Consensus 156 lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 156 IFGDGAGAAVLAASE 170 (174)
T ss_dssp TBCCEEEEEEEEEES
T ss_pred EeceeeEEEEEEeCC
Confidence 8888888764
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=7.9e-30 Score=228.92 Aligned_cols=150 Identities=26% Similarity=0.416 Sum_probs=139.8
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhCCCcCeeeEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
.|||.++++|+|+++|+++|+++..|.+++|+..++|.+++.++.++|++.+||++|++++|++. +|++||+||++|+
T Consensus 1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~--~~~~id~li~~t~ 78 (166)
T d1xpma1 1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDE--DKKKIGMVIVATE 78 (166)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHH--HHHHEEEEEEECS
T ss_pred CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccc--cCCCCCeEEEecc
Confidence 48999999999999999999999999999998766777777788999999999999999999885 5789999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++++..|+.+..+++.||+ ++++.+||+.++|+|++.||++|.+|++++. .+++|||++|+.
T Consensus 79 ~~~~~~p~~a~~v~~~lg~--~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~--~~~alvV~sd~~~~~~~~~~~~~fGD 154 (166)
T d1xpma1 79 SAVDAAKAAAVQIHNLLGI--QPFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGA 154 (166)
T ss_dssp SCSBSSSCHHHHHHHHTTC--CSSCEEEEEESTTTTHHHHHHHHHHHHTTCT--TCEEEEEEEEEECCCTTCSSGGGCEE
T ss_pred ccccccchhHHHHHHhhcc--ccceEEeeecccHHHHHHHHHHHhhHHhcCC--CCeEEEEEEceEeccCCCCCCccCCC
Confidence 9999999999999999998 6789999999999999999999999999995 499999999976
Q ss_pred -ceeeeecCCC
Q 012909 154 -AVAMLIGPDA 163 (453)
Q Consensus 154 -AvA~Ll~~~~ 163 (453)
|+|+||+++|
T Consensus 155 GA~A~ll~~~P 165 (166)
T d1xpma1 155 GAVAMVIAHNP 165 (166)
T ss_dssp EEEEEEEEESC
T ss_pred eeEEEEEecCC
Confidence 9999999987
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.95 E-value=4.9e-28 Score=220.06 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=139.6
Q ss_pred CCCceeEEeEEEEEcCCceechhHHhhhhCCCcCeee--EcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCE
Q 012909 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYT--VGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGR 81 (453)
Q Consensus 4 ~~~~~vgI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~--~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~ 81 (453)
++....+|.++|.|+|+++++++|+++..|.+++|+. +||.+|+ ++.++|++.+|+++|++++|++++++|++||+
T Consensus 5 ~~~~~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~--~~~~~e~~~~ma~~Aa~~aL~~a~~~~~dId~ 82 (181)
T d1mzja1 5 PERRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRR--IAEPDETIQVMGVAASRRALEHAGVDPAEIDL 82 (181)
T ss_dssp CCCCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEE--CCCTTCCHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred CCCCccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceeh--hhccCCcHHHHhHHHHHhhhhhccCChhHCeE
Confidence 4555689999999999999999999999999998873 5666655 55889999999999999999999999999999
Q ss_pred EEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------
Q 012909 82 LEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------- 153 (453)
Q Consensus 82 li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------- 153 (453)
||++|+++++..|+.+..||++||. +++.+||++++|+|++.||++|..|++++.. ++||||++|.+
T Consensus 83 li~~s~~~~~~~p~~a~~v~~~l~~---~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~--~~~LvV~~e~~s~~~~~~d 157 (181)
T d1mzja1 83 VVVSTMTNFVHTPPLSVAIAHELGA---DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLAD 157 (181)
T ss_dssp EEEECSCCCCCSSCHHHHHHHHHTC---TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSC
T ss_pred EEEeccCCccccccHHHHHHHhhcC---CCccceeHHhhhccHHHHHHHHhCHhhcCCC--ceeEEeeeccccccCCCCC
Confidence 9999999999999999999999996 7899999999999999999999999999954 99999999986
Q ss_pred ----------ceeeeecCCC
Q 012909 154 ----------AVAMLIGPDA 163 (453)
Q Consensus 154 ----------AvA~Ll~~~~ 163 (453)
|+|+||++++
T Consensus 158 ~~~~~lfGDGAaA~ll~~~~ 177 (181)
T d1mzja1 158 RSLSFLFGDGAGAAVVGPSD 177 (181)
T ss_dssp TTTTTTBCEEEEEEEEEEES
T ss_pred cceEEEeeeeeEEEEEEeCC
Confidence 8888887654
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.8e-27 Score=214.61 Aligned_cols=147 Identities=20% Similarity=0.174 Sum_probs=135.5
Q ss_pred EEeEEEEEcCCceechhHHhhhhCCCcCee--eEcccceEEeccCCCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcc
Q 012909 10 GILALDIYFPPTCVLQEALEVHDGVSKGKY--TVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSE 87 (453)
Q Consensus 10 gI~~i~~y~P~~~v~~~~l~~~~g~~~~k~--~~Gig~r~~av~~~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~ 87 (453)
||.++++|+|+++|+++++++..+.+.+++ ++||.+|+ ++.++|+..+|+++|++++|+++|++|+|||+||++|.
T Consensus 2 gI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~--~~~~~e~~~~ma~~Aa~~aL~~agi~~~dIdlli~~s~ 79 (172)
T d1ub7a1 2 GILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERR--VAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATN 79 (172)
T ss_dssp EEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEE--ECCTTCCHHHHHHHHHHHHHHHSTTTTTTEEEEEEECS
T ss_pred ceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeee--eccccccccHHHHHHHHHHHhhcCcccccceEEEEecc
Confidence 899999999999999999999999998887 45666665 45889999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc--------------
Q 012909 88 TVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA-------------- 153 (453)
Q Consensus 88 s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~-------------- 153 (453)
++++..|+.+.+|+++||. ++.+||+.++|+|++.||++|..|+++|.+ ++||||++|..
T Consensus 80 t~~~~~p~~a~~v~~~Lg~----~~~~~di~~~C~g~~~al~~a~~~~~~~~~--~~~Lvv~~e~~S~~~~~~d~~~~~l 153 (172)
T d1ub7a1 80 TPDALFPDTAALVQARFGL----KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWNDRATAVL 153 (172)
T ss_dssp SCSEEESCHHHHHHHHTTC----CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTCHHHHTT
T ss_pred cccccccchHHHHHHHhcc----CccceeehhccccHHHHHHHHhhhhhcCCc--ceeEEecccccccccCCCCcCeEEE
Confidence 9999999999999999985 578999999999999999999999999965 99999999997
Q ss_pred ----ceeeeecCCCC
Q 012909 154 ----AVAMLIGPDAP 164 (453)
Q Consensus 154 ----AvA~Ll~~~~~ 164 (453)
|+|+||++.+.
T Consensus 154 fGDgAaA~ll~~~~~ 168 (172)
T d1ub7a1 154 FGDGGGAAVVGKVRE 168 (172)
T ss_dssp BCCEEEEEEEECCCT
T ss_pred ecceeEEEEEEEcCC
Confidence 88999988763
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.88 E-value=4e-23 Score=190.29 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=117.7
Q ss_pred EEeEEEEEcCCceechhHHhhhhCC----CcC--e---e--eEcccceEEeccCCC---------------CCHHHHHHH
Q 012909 10 GILALDIYFPPTCVLQEALEVHDGV----SKG--K---Y--TVGLGQDCMAFCSEV---------------EDVISMSLT 63 (453)
Q Consensus 10 gI~~i~~y~P~~~v~~~~l~~~~g~----~~~--k---~--~~Gig~r~~av~~~~---------------ed~~~la~~ 63 (453)
.|.++++|+|+++|+|+|+.+.... ++. + + ++||.+|++..+.++ +.+.+|+++
T Consensus 2 ~i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~ 81 (200)
T d1u0ma1 2 TLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPA 81 (200)
T ss_dssp EECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999876421 221 2 2 469999987642211 257899999
Q ss_pred HHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHHHhCCCCC
Q 012909 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVESASWDG 142 (453)
Q Consensus 64 Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v~sg~~~~ 142 (453)
|+++||+++|++|+|||+||++|+++. ..|+.+..|+++||+ .+++..+++. +||+|++.||.+|.+++++|. .
T Consensus 82 Aa~~aL~~ag~~~~dId~lI~~s~t~~-~~P~~aa~v~~~lg~--~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~--~ 156 (200)
T d1u0ma1 82 VIQRALDDAELLATDIDVIIYVSCTGF-MMPSLTAWLINEMGF--DSTTRQIPIAQLGCAAGGAAINRAHDFCTAYP--E 156 (200)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEECSSSC-CSSCHHHHHHHHTTC--CTTCEEEEECSCGGGHHHHHHHHHHHHHHHST--T
T ss_pred HHHHHHHHcCCChhhhheEEEeccCCC-CcchhHHHHHHHHhc--CCCeeEeccccchhhHHHHHHHHHHHHHHhCC--C
Confidence 999999999999999999999998875 579999999999998 7889999995 799999999999999999994 4
Q ss_pred CeEEEEEeecc
Q 012909 143 RYGLVVCTDTA 153 (453)
Q Consensus 143 ~~aLVv~~d~~ 153 (453)
++||||++|.+
T Consensus 157 ~~vLvv~~e~~ 167 (200)
T d1u0ma1 157 ANALIVACEFC 167 (200)
T ss_dssp CEEEEEEEEEG
T ss_pred CEEEEEEEecc
Confidence 99999999986
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.87 E-value=1.2e-22 Score=191.56 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=125.1
Q ss_pred eeEEeEEEEEcCCceechhHHhhhhC----CC--c------Cee--eEcccceEEeccCC--------------------
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHDG----VS--K------GKY--TVGLGQDCMAFCSE-------------------- 53 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~g----~~--~------~k~--~~Gig~r~~av~~~-------------------- 53 (453)
.+.|.|+|+|+|++.|+|+++.+++. .+ + .++ +.||.+|++..++.
T Consensus 16 pa~I~giGt~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T d1bi5a1 16 PATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQ 95 (235)
T ss_dssp CCEEEEEEEECCSCEEESTTHHHHHHHHTTCTTCHHHHHHHHHHHHHSCCCEEECSCCHHHHHTCHHHHSSSCSCHHHHH
T ss_pred CcEEEEEEEECCCcEEeHHHHHHHHHHhhccccchhhhhhhhhhhcccCCceeEEecChHhhccCcccccccCccHHHHH
Confidence 47899999999999999999987642 11 1 122 47899888764321
Q ss_pred ---CCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee-CCcChhHHHHHH
Q 012909 54 ---VEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS-TNACYGGTAALF 129 (453)
Q Consensus 54 ---~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv-~~aC~gg~~AL~ 129 (453)
.++..+|+++|++++|+++|++++|||+||++|+|+.+ .|+.++.+++.||+ ..++..+++ ..+|+|++.||+
T Consensus 96 ~~~~~~~~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~~~-~p~~~a~~~~~l~~--~~~~~~~~~~~~~C~g~~~al~ 172 (235)
T d1bi5a1 96 DMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVD-MPGADYQLTKLLGL--RPYVKRYMMYQQGCFAGGTVLR 172 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCGGGCCEEEEEESSCCC-SSCHHHHHHHHHTC--CTTCEEEEEESCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEecccCCc-cCccHHHHHHHHhc--CCCceEEeeecCccchHHHHHH
Confidence 13567899999999999999999999999999999876 67778888888887 577776655 789999999999
Q ss_pred HHHHHHHhCCCCCCeEEEEEeecc------------------------ceeeeecCCC
Q 012909 130 NCVNWVESASWDGRYGLVVCTDTA------------------------AVAMLIGPDA 163 (453)
Q Consensus 130 ~A~~~v~sg~~~~~~aLVv~~d~~------------------------AvA~Ll~~~~ 163 (453)
+|.+++++|. .++||||++|.+ |+|+||+.+|
T Consensus 173 ~A~~~i~~~~--~~~vLvV~~E~~S~~~~~~d~~~~~~~v~~~lFGDGA~A~vl~~~p 228 (235)
T d1bi5a1 173 LAKDLAENNK--GARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDP 228 (235)
T ss_dssp HHHHHHHTST--TCEEEEEEEECGGGTCCCCCTTCHHHHHHHHHBCCEEEEEEEESSC
T ss_pred HHHHHHHcCC--CCeEEEEEeeecceecCCCCCCchhhhcceeeeccceEEEEEecCC
Confidence 9999999994 599999999976 8899999776
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=7.6e-19 Score=152.72 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=92.2
Q ss_pred CCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhh
Q 012909 190 EYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKE 269 (453)
Q Consensus 190 ~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~ 269 (453)
.+..|||+.. |..++....+...+.+ ++++++++|||+|++||++.++++.
T Consensus 29 ~~~~m~G~~v---f~~av~~~~~~i~~~L---~~~g~~~~dId~~i~Hq~~~~~~~~----------------------- 79 (143)
T d1hnja2 29 IHLTMAGNEV---FKVAVTELAHIVDETL---AANNLDRSQLDWLVPHQANLRIISA----------------------- 79 (143)
T ss_dssp CSCEECHHHH---HHHHHHHHHHHHHHHH---HHTTCCGGGCCEEEECCSCHHHHHH-----------------------
T ss_pred ceEEEEChHH---hhhhhhhhhHHHHHHH---HHhhhcccccceEEeccCchHHHHH-----------------------
Confidence 3467888766 6666665555444444 4567999999999999999999877
Q ss_pred hccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecc
Q 012909 270 KLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGS 349 (453)
Q Consensus 270 ~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGs 349 (453)
+++.++++.++.. ...+++||+++||+|++|..++++ +++++||+|+|++||+
T Consensus 80 -~~~~l~l~~~k~~-------------------------~~~~~~GN~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~ 132 (143)
T d1hnja2 80 -TAKKLGMSMDNVV-------------------------VTLDRHGNTSAASVPCALDEAVRD-GRIKPGQLVLLEAFGG 132 (143)
T ss_dssp -HHHHTTCCGGGBC-------------------------CCHHHHCBCGGGHHHHHHHHHHHT-TCSCTTCEEEEEEEET
T ss_pred -HHHhCccchhhhh-------------------------hhhhhhcccccchHHHHHHHHHHh-CCCCCCCEEEEEEEeh
Confidence 3445678876321 123799999999999999999998 7899999999999999
Q ss_pred hhhheeeEEEE
Q 012909 350 GLTATMFSLQL 360 (453)
Q Consensus 350 G~~~~~~~l~~ 360 (453)
|++|++.++||
T Consensus 133 G~s~g~~llrw 143 (143)
T d1hnja2 133 GFTWGSALVRF 143 (143)
T ss_dssp TTEEEEEEEEC
T ss_pred hhhhEEEEEEC
Confidence 99999999987
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.74 E-value=5.8e-19 Score=155.18 Aligned_cols=120 Identities=19% Similarity=0.216 Sum_probs=96.3
Q ss_pred CCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHH
Q 012909 188 ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIA 267 (453)
Q Consensus 188 ~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~ 267 (453)
+..+..|||+.. |..++....+.+.+.+ ++.+++.+|||+|++||++.+|++..
T Consensus 31 ~~~~~~m~G~~v---~~~av~~vp~~i~~~L---~~~gl~~~dId~~i~Hq~~~~~~~~v-------------------- 84 (153)
T d1mzja2 31 GRPALVMDGKRV---FRWAVADVVPAAREAL---EVAGLTVGDLVAFVPHQANLRIIDVL-------------------- 84 (153)
T ss_dssp CSCCEEECHHHH---HHHHHHHHHHHHHHHH---HTTTCCGGGCSEEEECCSCHHHHHHH--------------------
T ss_pred CCceEEEcCHHH---HHHHHHHHHHHHHHHH---HHhCCCcccCCEEEEcCCcHHHHHHH--------------------
Confidence 344678999865 6677766666555555 56789999999999999999998773
Q ss_pred hhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEe
Q 012909 268 KEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSY 347 (453)
Q Consensus 268 ~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~sy 347 (453)
++.++++.++.+ + ...+++|||+|||+|++|..++++ +++++||+|+|++|
T Consensus 85 ----~~~lgi~~ek~~----------------------~--~~~~~~GNt~Sasip~~L~~~~~~-~~~~~Gd~ill~~f 135 (153)
T d1mzja2 85 ----VDRLGVPEHVVV----------------------S--RDAEDTGNTSSASVALALDRLVRS-GAVPGGGPALMIGF 135 (153)
T ss_dssp ----HHHHTCCTTSEE----------------------C--CTHHHHCBCTTHHHHHHHHHHHHH-TSSCTTCEEEEEEE
T ss_pred ----HHHhCCCchhcc----------------------h--hhhhhcCCcccchHHHHHHHHHHc-CCCCCCCEEEEEEE
Confidence 344577766321 1 123789999999999999999998 78999999999999
Q ss_pred cchhhheeeEEEEec
Q 012909 348 GSGLTATMFSLQLQE 362 (453)
Q Consensus 348 GsG~~~~~~~l~~~~ 362 (453)
|+|++|++.+++|.+
T Consensus 136 G~G~s~~~~~l~~~~ 150 (153)
T d1mzja2 136 GAGLSYAGQALLLPD 150 (153)
T ss_dssp ETTTEEEEEEEECCC
T ss_pred chhhhhhEEEEEecC
Confidence 999999999999976
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=1.7e-18 Score=151.35 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=93.9
Q ss_pred CCCCceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHH
Q 012909 188 ASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIA 267 (453)
Q Consensus 188 ~~~~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~ 267 (453)
...|..|||+.. |..++..+.+.+.+.+ ++++++++|||+|++||++.++++..
T Consensus 31 ~~~~~~m~G~~V---f~~a~~~v~~~i~~~L---~~~gl~~~dId~~i~Hqa~~~i~~~v-------------------- 84 (148)
T d1u6ea2 31 PRPFVRLEGPAV---FRWAAFKMGDVGRRAM---DAAGVRPDQIDVFVPHQANSRINELL-------------------- 84 (148)
T ss_dssp CCCCEEECHHHH---HHHHHHHHHHHHHHHH---HHHTCCGGGCCEEEECCSCHHHHHHH--------------------
T ss_pred CCccEEeecHHH---HHHHHHHHHHHHHHHH---HHcCCCcccccEEEeccccHHHHHHH--------------------
Confidence 344778999976 6666666655555444 45579999999999999999998873
Q ss_pred hhhccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEe
Q 012909 268 KEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSY 347 (453)
Q Consensus 268 ~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~sy 347 (453)
++.+|+++++. -. ...+++|||+|||+|++|.+++++ +++++|++|+|++|
T Consensus 85 ----~~~lgl~~ek~----------------------~~--~~~~~~GNt~sasip~~L~~a~~~-g~i~~Gd~vll~gf 135 (148)
T d1u6ea2 85 ----VKNLQLRPDAV----------------------VA--NDIEHTGNTSAASIPLAMAELLTT-GAAKPGDLALLIGY 135 (148)
T ss_dssp ----HHHHTCCTTCE----------------------EC--CTHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEE
T ss_pred ----HHhcCCCchhh----------------------hh--hhHHhhCCCccchHHHHHHHHHHc-CCCCCCCEEEEEEE
Confidence 34457776531 11 123799999999999999999999 78999999999999
Q ss_pred cchhhheeeEEEE
Q 012909 348 GSGLTATMFSLQL 360 (453)
Q Consensus 348 GsG~~~~~~~l~~ 360 (453)
|+|++|++.++|+
T Consensus 136 G~G~s~~a~llrv 148 (148)
T d1u6ea2 136 GAGLSYAAQVVRM 148 (148)
T ss_dssp ETTTEEEEEEEEC
T ss_pred chhhhheEEEEeC
Confidence 9999999999885
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=2.8e-18 Score=150.19 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=92.8
Q ss_pred CceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhh
Q 012909 191 YPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEK 270 (453)
Q Consensus 191 ~~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~ 270 (453)
+..|||+.. |..++..+.+.+.+.+ ++++++++|||+|++||++.++++.
T Consensus 33 ~~~M~G~~v---f~~a~~~vp~~i~~~L---~~~g~~~~dId~~i~Hqa~~~~~~~------------------------ 82 (149)
T d1ub7a2 33 RLYMNGREV---FKFAVRVMNTATLEAI---EKAGLTPEDIRLFVPHQANLRIIDA------------------------ 82 (149)
T ss_dssp SCEECHHHH---HHHHHHHHHHHHHHHH---HHHTCCGGGCSEEEECCSCHHHHHH------------------------
T ss_pred cEEEccHHH---HHHHHHHHHHHHHHHH---HhhccccccccEEEeeccchHHHHH------------------------
Confidence 567888765 6666655555444444 4557999999999999999999877
Q ss_pred ccCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecch
Q 012909 271 LAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350 (453)
Q Consensus 271 l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG 350 (453)
+.+.+++++++. .. ...++|||++||+|++|..++++ +++++||+|+|++||+|
T Consensus 83 i~~~lgi~~~k~----------------------~~---~~~~~Gn~~sasip~~L~~~~~~-~~~~~Gd~vll~g~G~G 136 (149)
T d1ub7a2 83 ARERLGLPWERV----------------------AV---NVDRYGNTSTASIPLALKEAVDA-GRIREGDHVLLVSFGAG 136 (149)
T ss_dssp HHHTTTCCGGGB----------------------CC---CHHHHCBCGGGHHHHHHHHHHHH-TSSCTTCEEEEEEEETT
T ss_pred HHhhccchhhHH----------------------HH---HHHHhcCCcchhHHHHHHHHHHc-CCCCCCCEEEEEEEchH
Confidence 345567887632 11 12789999999999999999999 78999999999999999
Q ss_pred hhheeeEEEEec
Q 012909 351 LTATMFSLQLQE 362 (453)
Q Consensus 351 ~~~~~~~l~~~~ 362 (453)
++|++.+++|..
T Consensus 137 ~s~ga~llrw~g 148 (149)
T d1ub7a2 137 LTWAAAVLTWGG 148 (149)
T ss_dssp TEEEEEEEECCC
T ss_pred hhhEEEEEEECC
Confidence 999999999963
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.66 E-value=2.5e-17 Score=143.73 Aligned_cols=94 Identities=21% Similarity=0.337 Sum_probs=79.5
Q ss_pred hcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccCCCCCCccccccchhHHHHHHHHHHHHhh
Q 012909 222 EGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYD 301 (453)
Q Consensus 222 ~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~ 301 (453)
.+++++.+|||+|++||++.++++. +++.+++++++ .
T Consensus 54 ~~~g~~~~did~~~~Hq~~~~i~~~------------------------i~~~Lgl~~~k---------~---------- 90 (148)
T d1u0ma2 54 GEHGWDASDLDFYIVHAGGPRILDD------------------------LSTFLEVDPHA---------F---------- 90 (148)
T ss_dssp HTTSCCSSCCSCCEEECSHHHHHHH------------------------HHHHSCSCGGG---------G----------
T ss_pred HHhCCCHHHCCEEEECCCCHHHHHH------------------------HHHHhCCChhh---------h----------
Confidence 4557999999999999999999877 44556888873 1
Q ss_pred hhcCCCcccccccCccccchHHHHHHHHHhhcCcCCCCCEEEEEEecchhhheeeEEEEec
Q 012909 302 LKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQE 362 (453)
Q Consensus 302 ~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~~~~~~Gd~ill~syGsG~~~~~~~l~~~~ 362 (453)
..++...+++|||+|||+|++|..++++ +.+++||+|+|++||+|+++++.+++|+.
T Consensus 91 ---~~s~~~l~~~GN~~sasi~~~L~~~~~~-~~~~~Gd~ill~gfG~G~s~~~~llrW~~ 147 (148)
T d1u0ma2 91 ---RFSRATLTEYGNIASAVVLDALRRLFDE-GGVEEGARGLLAGFGPGITAEMSLGCWQT 147 (148)
T ss_dssp ---HHHHHHHHHTCBCTTHHHHHHHHHHHHS-CCCCSSCCCEEEEEETTTEEEEEEEEEEC
T ss_pred ---hHHHHHHHhcCCCCcchHHHHHHHHHHc-CCCCCCCEEEEEEEchHhEeeEEEEEEcc
Confidence 1222334899999999999999999998 78899999999999999999999999974
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=99.50 E-value=9.9e-15 Score=128.40 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=83.3
Q ss_pred eecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhcc
Q 012909 193 VVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLA 272 (453)
Q Consensus 193 ~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~ 272 (453)
.+.++.. +..+...+.+.+.+.+ ++++++.+|+|+|++||++.+|++. ++
T Consensus 35 ~~l~r~V---p~~~~~~v~~~v~~~l---~~~gl~~~di~~~v~Hqgg~~Ild~------------------------i~ 84 (160)
T d1ee0a2 35 FQLHRDV---PLMVAKNIENAAEKAL---SPLGITDWNSVFWMVHPGGRAILDQ------------------------VE 84 (160)
T ss_dssp CEECTTH---HHHHHHHHHHHHHHHH---GGGTCCCGGGSEEEECCSSHHHHHH------------------------HH
T ss_pred EeeCchh---HHHHHHHHHHHHHHHH---hhccCCccccceEeecCCcHHHHHH------------------------HH
Confidence 3445554 3333333333333333 4557999999999999999999887 44
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcCC---CCCEEEEEE
Q 012909 273 PYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSSL---EGKRVIMFS 346 (453)
Q Consensus 273 ~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~---~~~~---~Gd~ill~s 346 (453)
+.++++.+ ++..|+...+++|||+|||+++.|..++++. +... .++++++++
T Consensus 85 ~~L~L~~~----------------------~l~~s~~vl~~yGNtSSaSI~~vL~~~~~~~~~~~~~~~g~~~d~~ll~a 142 (160)
T d1ee0a2 85 RKLNLKED----------------------KLRASRHVLSEYGNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGVLFG 142 (160)
T ss_dssp HHTTCCTT----------------------TTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTBTTBSEEEEEE
T ss_pred HHcCCCHH----------------------HHHHHHHHHHHhCCCccchHHHHHHHHHhhhhhcCCCCcCCCcCEEEEEE
Confidence 55677776 3334445558999999999999999988751 1112 237899999
Q ss_pred ecchhhheeeEEEEe
Q 012909 347 YGSGLTATMFSLQLQ 361 (453)
Q Consensus 347 yGsG~~~~~~~l~~~ 361 (453)
||+|++|++++++-.
T Consensus 143 fG~Glt~~~~llr~~ 157 (160)
T d1ee0a2 143 FGPGMTVETVVLRSV 157 (160)
T ss_dssp EETTTEEEEEEEEEC
T ss_pred EChHHHHHHHHHeec
Confidence 999999999999854
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=99.49 E-value=1.1e-14 Score=127.77 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=84.8
Q ss_pred ceecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhc
Q 012909 192 PVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKL 271 (453)
Q Consensus 192 ~~vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l 271 (453)
-.+.|+.....-.+.+..+.+.++ ++++++.+|+|+|++||++.+|++. +
T Consensus 30 ~~~l~~~Vp~~v~~~i~~~~~~~l------~~~~~~~~did~~i~Hqgg~~Ild~------------------------v 79 (156)
T d1u0ua2 30 TFQLKGAVPDLISANIENCMVEAF------SQFKISDWNKLFWVVHPGGRAILDR------------------------V 79 (156)
T ss_dssp EEEECTTHHHHHHHHHHHHHHHHH------GGGTCCCGGGSEEEECCSCHHHHHH------------------------H
T ss_pred EEEEcchhHHHHHHHHHHHHHHHH------HHcCCChhhCceEeecCCcHHHHHH------------------------H
Confidence 344555543322334444444443 3456899999999999999999877 3
Q ss_pred cCCCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcC---CCCCEEEEE
Q 012909 272 APYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSS---LEGKRVIMF 345 (453)
Q Consensus 272 ~~~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~---~~~---~~Gd~ill~ 345 (453)
++.++++++ |+..|+.+.+++|||+|||+|+.|..++++. +.. ..|++++++
T Consensus 80 ~~~L~L~~~----------------------k~~~s~~~l~~~GN~sSasip~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (156)
T d1u0ua2 80 EAKLNLDPT----------------------KLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVLF 137 (156)
T ss_dssp HHHHTCCTT----------------------TTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHHTCSBSBTTBSEEEEE
T ss_pred HHHhCCCcc----------------------cchhhHHHHhhcCCCCcccHHHHHHHHHHhhhhccCCCcCCCCCEEEEE
Confidence 445577776 2333444458999999999999999987651 121 346999999
Q ss_pred EecchhhheeeEEEEec
Q 012909 346 SYGSGLTATMFSLQLQE 362 (453)
Q Consensus 346 syGsG~~~~~~~l~~~~ 362 (453)
+||+|+++++++++..+
T Consensus 138 gfG~Glt~~~~llr~~~ 154 (156)
T d1u0ua2 138 GFGPGLTIETVVLKSVP 154 (156)
T ss_dssp EEETTTEEEEEEEEECB
T ss_pred EECHHHhHHHHHHeeCc
Confidence 99999999999999765
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.49 E-value=1.1e-14 Score=127.37 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=83.6
Q ss_pred ecCcchHHHHHHHHHHHHHHHHHHHhhhhcCCCCccCccEEEecCcchHHHHHHHHhhhhhhhhccCCchhhHHhhhccC
Q 012909 194 VDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAP 273 (453)
Q Consensus 194 vdG~~s~~~y~~al~~~~~~~~~~~~~~~~~~~~~~d~d~~v~H~p~~km~~ka~~~l~~~~~~~~~~~~~~~~~~~l~~ 273 (453)
+-++.....-.+.+..+...++ .+++++.+|+|+|++||++.++++. +++
T Consensus 31 ~l~r~Vp~~i~~~i~~~~~~~l------~~~gl~~~di~~~v~Hqgg~~Ild~------------------------v~~ 80 (154)
T d1bi5a2 31 HLLKDVPGIVSKNITKALVEAF------EPLGISDYNSIFWIAHPGGPAILDQ------------------------VEQ 80 (154)
T ss_dssp EECSCHHHHHHHHHHHHHHHHH------GGGTCCCTTSSEEEECCSSHHHHHH------------------------HHH
T ss_pred ecccchHHHHHHHHHHHHHHHH------HHcCCCccccceEeeccccHHHHHH------------------------HHH
Confidence 3444443323344444444333 4556899999999999999999887 345
Q ss_pred CCCCCccccccchhHHHHHHHHHHHHhhhhcCCCcccccccCccccchHHHHHHHHHhhc---CcCCCC---CEEEEEEe
Q 012909 274 YSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEK---HSSLEG---KRVIMFSY 347 (453)
Q Consensus 274 ~l~l~~e~~~~~~~~~k~~~~~~~~~~~~~~~~s~~~~~~~GN~~taSl~l~L~sll~~~---~~~~~G---d~ill~sy 347 (453)
.++++++ |+..|+.+.+++|||+|||+|+.|..++++. +....| +++++++|
T Consensus 81 ~L~L~~~----------------------~~~~s~~vl~~yGN~SSasi~~vL~~~~~~~~~~~~~~~g~~~~~~~~~aF 138 (154)
T d1bi5a2 81 KLALKPE----------------------KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGF 138 (154)
T ss_dssp HHTCCGG----------------------GGHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBTTTTCSEEEEEEE
T ss_pred HhCCCHH----------------------HHHHhHHHHHhcCCCCcccHHHHHHHHHHhhhccCCcccCCCcCEEEEEEE
Confidence 5677776 2334445558999999999999999988752 222233 78999999
Q ss_pred cchhhheeeEEEEec
Q 012909 348 GSGLTATMFSLQLQE 362 (453)
Q Consensus 348 GsG~~~~~~~l~~~~ 362 (453)
|+|++++++++|..+
T Consensus 139 G~Glt~~~~llr~~~ 153 (154)
T d1bi5a2 139 GPGLTIETVVLRSVA 153 (154)
T ss_dssp ETTTEEEEEEEEECB
T ss_pred chHHhHHHHHHhcCc
Confidence 999999999998653
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=2.5e-09 Score=101.54 Aligned_cols=97 Identities=6% Similarity=0.119 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCC-CCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVID-KSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~-~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
.+.++.+|+..|++.+|+++|++|++||.|++|...+.. ....++..+.-..|+ +..++++.|+++|++|+.|+..|
T Consensus 20 ~~~~~~dL~~~a~~~al~~~~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGl--p~~vp~~tVn~~CaSg~~Ai~~a 97 (273)
T d1ulqa1 20 ASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGF--PVEVAGCTVNRLCGSGLEAVAQA 97 (273)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTC--CTTCEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCC--CCccceEEEecccchHHHHHHHH
Confidence 367889999999999999999999999999999876643 344567777777788 78899999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
...|++|.. +.+|++++|.+
T Consensus 98 ~~~I~~G~~--d~~lagG~Esm 117 (273)
T d1ulqa1 98 ARAIWAGEG--KVYIGSGVESM 117 (273)
T ss_dssp HHHHHTTSC--SEEEEEEEEES
T ss_pred HHHHhcCCC--ccceeeecccc
Confidence 999999966 99999999998
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.94 E-value=2.6e-09 Score=101.04 Aligned_cols=97 Identities=7% Similarity=0.027 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
.+..+.+|+..+++.+|+++|++|++||.|++|...+......++..+.-..|+ +..++++.+++.|++|+.|+..|.
T Consensus 23 ~~~~~~dL~~~~~~~~l~~~~i~~~~Id~vi~G~~~~~~~~~n~ar~~al~agl--p~~vpa~tv~~~C~Sg~~Ai~~Aa 100 (268)
T d1m3ka1 23 ANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGV--PQEATAWGMNQLAGSGLRAVALGM 100 (268)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTC--CTTSEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHCcEEEEeeccccCcchHHHhHHHHHhCC--cccccceeecccCcccchHHHHHH
Confidence 367899999999999999999999999999999876554566788888888898 678999999999999999999999
Q ss_pred HHHHhCCCCCCeEEEEEeecc
Q 012909 133 NWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|++|.. +.+|+++.|.+
T Consensus 101 ~~I~~G~~--dvvlagG~Esm 119 (268)
T d1m3ka1 101 QQIATGDA--SIIVAGGMESM 119 (268)
T ss_dssp HHHHTTSC--SCEEEEEEEES
T ss_pred HHHhCCCc--eEEeecccccc
Confidence 99999976 99999999988
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.77 E-value=1.6e-08 Score=95.15 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCcCCcCEEEEEcccCC-CCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHH
Q 012909 54 VEDVISMSLTVVTSLLEK-YKIDPTQIGRLEVGSETVI-DKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNC 131 (453)
Q Consensus 54 ~ed~~~la~~Aa~~aL~~-agi~~~~Id~li~~t~s~~-~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A 131 (453)
+..+.+|+..+++.+|++ +|++|++||.|++|...+. .....++..+.-..|+ +..++++.|++.|.+|+.|+..|
T Consensus 27 ~~~~~dL~~~~i~~~l~r~agi~~~~Id~vi~G~v~~~~~~g~n~aR~~al~ag~--p~~vp~~tV~~~C~Sgl~Ai~~a 104 (262)
T d1wdkc1 27 NTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQI--PHTSAAQTVSRLCGSSMSALHTA 104 (262)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSS--CTTSEEEEEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHeeEEEEEeecccccccccchhhhHhhhhc--ccccchhhccccccHHHHHHHHH
Confidence 567899999999999997 8999999999999987664 3455677777767777 78899999999999999999999
Q ss_pred HHHHHhCCCCCCeEEEEEeecc
Q 012909 132 VNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+.|++|.. +.+|+++.|.+
T Consensus 105 a~~I~sG~~--dvvlAgGvEsm 124 (262)
T d1wdkc1 105 AQAIMTGNG--DVFVVGGVEHM 124 (262)
T ss_dssp HHHHHTTSC--SEEEEEEEEET
T ss_pred HHHHHhhcC--Cceeeeccccc
Confidence 999999966 99999999987
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=3.5e-08 Score=93.09 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHHHc----CCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHH
Q 012909 53 EVEDVISMSLTVVTSLLEKY----KIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAAL 128 (453)
Q Consensus 53 ~~ed~~~la~~Aa~~aL~~a----gi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL 128 (453)
.+..+.+|+..+++.+|+++ +++|++||.|++|+..+.......+..+.-..|+ +..++++.|+..|.+|+.|+
T Consensus 31 ~~~~~~~L~~~~i~~~l~r~~~~~~idp~~Id~vi~G~v~~~g~~~~~aR~~al~agl--p~~vpa~tVnr~CaSg~~Ai 108 (269)
T d1afwa1 31 KDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGI--PYSTPFVALNRQCSSGLTAV 108 (269)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTC--CTTSCEEEEECGGGHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCChhhcCEEEeccccccccccccchhhhhhccc--cccccchhccccchHHHHHH
Confidence 35678999999999999875 6999999999999876543334556666667777 78899999999999999999
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 129 FNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 129 ~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..|...|++|.. +.+|++++|.+
T Consensus 109 ~~Aa~~I~~G~~--divlagG~Esm 131 (269)
T d1afwa1 109 NDIANKIKVGQI--DIGLALGVESM 131 (269)
T ss_dssp HHHHHHHHTTSC--SEEEEEEEEEH
T ss_pred HHHHHHHhhccc--cceeeeecccc
Confidence 999999999966 99999999987
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=6.6e-07 Score=82.92 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=92.6
Q ss_pred eeEEeEEEEEcCCceechhHHhhhh--CCC---c-Ceee-EcccceEEec----cC---------CCCCHHHHHHHHHHH
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT-VGLGQDCMAF----CS---------EVEDVISMSLTVVTS 67 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~av----~~---------~~ed~~~la~~Aa~~ 67 (453)
.|-|.|+|+..|.-. +.+++.+.. |.+ + .++. .+.-.+.... +. ......-|+..|+.+
T Consensus 3 rVaItG~G~vsp~g~-~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~aa~~ 81 (249)
T d1j3na1 3 RVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAAQL 81 (249)
T ss_dssp CEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHHHH
T ss_pred cEEEECCEeECCCcC-CHHHHHHHHHcCCCccccCCccccccCCccccccccccccccccHHHHhhCCHHHHHHHHHHHH
Confidence 499999999999664 667665442 321 1 1110 0000000000 00 011235679999999
Q ss_pred HHHHcCCCcCCcC----EEEEEcccCCC--------------------------CCccHHHHHHHHhcccCCCCeeEEee
Q 012909 68 LLEKYKIDPTQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKYGNTDIEGVDS 117 (453)
Q Consensus 68 aL~~agi~~~~Id----~li~~t~s~~~--------------------------~~~~~a~~l~~~Lgl~G~~~~~~~dv 117 (453)
+|+++|+++++++ .|++||..+.. ....++.+|...+|+.| +++.+
T Consensus 82 Al~dAGl~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~G----p~~tv 157 (249)
T d1j3na1 82 ALEDAGLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTG----PSSTV 157 (249)
T ss_dssp HHHHHTCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS----CBCCB
T ss_pred HHHHcCCChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCC----Ccccc
Confidence 9999999876644 56777754421 01245668999999833 36778
Q ss_pred CCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 118 TNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 118 ~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
..||++++.||..|..+|++|.. +.+||.++|..
T Consensus 158 ~~aCaSsl~Ai~~A~~~i~~G~~--d~alvgg~d~~ 191 (249)
T d1j3na1 158 VTACATGADALGSALRMIQLGEA--DLVLAGGTEAA 191 (249)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHcCCC--CeeeecchHhh
Confidence 99999999999999999999977 89999999964
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=6.4e-06 Score=76.02 Aligned_cols=140 Identities=10% Similarity=0.038 Sum_probs=91.5
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC---c-Ceee-EcccceEEe-ccCC-------------CCCHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT-VGLGQDCMA-FCSE-------------VEDVISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~a-v~~~-------------~ed~~~la~~Aa 65 (453)
..|-|.|||+..|-- .+.+++.+.. |.+ + ..+. .+.....-. +... -....-|++.|+
T Consensus 2 rrVaItG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa 80 (250)
T d2gfva1 2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCc-CCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence 358999999999976 3666665543 211 0 0110 011100000 0000 112357899999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEcccCCC-----------------C---------CccHHHHHHHHhcccCCCCeeEE
Q 012909 66 TSLLEKYKIDPTQIG----RLEVGSETVID-----------------K---------SKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 66 ~~aL~~agi~~~~Id----~li~~t~s~~~-----------------~---------~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
+++|+++|+++++++ .+++|+..... . .-.++.+|...||+. -+++
T Consensus 81 ~~Al~dAg~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~----Gp~~ 156 (250)
T d2gfva1 81 VQAMQDSGLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLR----GPSI 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCC----SCEE
T ss_pred HHHHHhcCCCccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCC----CCcc
Confidence 999999998776544 35666643211 0 012467889999983 3467
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+..+|++++.||..|..+|++|.. +.+||.++|..
T Consensus 157 tv~~aCaSg~~Ai~~A~~~i~~G~~--d~~lvgg~d~~ 192 (250)
T d2gfva1 157 SIATAQTSGVHNIGHAARIIAYGDA--DVMVAGGAEKA 192 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred ccccccchhhhhhHHHHHHHHcCCc--chhhcccchhh
Confidence 7899999999999999999999976 89999999964
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=97.91 E-value=1.5e-05 Score=73.07 Aligned_cols=140 Identities=10% Similarity=0.045 Sum_probs=92.4
Q ss_pred ceeEEeEEEEEcCCceechhHHhhhh--CCC---c-Ceee-EcccceEEeccCC--------------CCCHHHHHHHHH
Q 012909 7 KNVGILALDIYFPPTCVLQEALEVHD--GVS---K-GKYT-VGLGQDCMAFCSE--------------VEDVISMSLTVV 65 (453)
Q Consensus 7 ~~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---~-~k~~-~Gig~r~~av~~~--------------~ed~~~la~~Aa 65 (453)
..|-|.|||+.+|-- .+.+++.+.. |.+ + .++. .+.........+. ......|+..|+
T Consensus 2 ~rVaItG~G~v~p~G-~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CeEEEECCeeECCCC-CCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 468999999999987 4777765553 321 1 1110 0111000000000 122357899999
Q ss_pred HHHHHHcCCCcCCcC----EEEEEcccCC-----------------CC---------CccHHHHHHHHhcccCCCCeeEE
Q 012909 66 TSLLEKYKIDPTQIG----RLEVGSETVI-----------------DK---------SKSIKTFLMQIFEKYGNTDIEGV 115 (453)
Q Consensus 66 ~~aL~~agi~~~~Id----~li~~t~s~~-----------------~~---------~~~~a~~l~~~Lgl~G~~~~~~~ 115 (453)
.++|+++|++++.+. .+++|+.... .. .-..+..++..||+. -+++
T Consensus 81 ~~Al~~Agl~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~----Gp~~ 156 (250)
T d1e5ma1 81 QQAINDAKLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAK----GPNN 156 (250)
T ss_dssp HHHHHHHTCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC----SCEE
T ss_pred HHHHHHcCCChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCC----CCCc
Confidence 999999998875542 4666654321 00 112567788889983 3477
Q ss_pred eeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 116 DSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 116 dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.+..||++++.||..|.++|++|.. +.+||.++|..
T Consensus 157 tv~~ACsS~l~Ai~~A~~~i~~G~~--d~~lvGg~~~~ 192 (250)
T d1e5ma1 157 CTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAA 192 (250)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cccccchhhhhhhHHHhhcccCCcc--cccccccchhh
Confidence 7889999999999999999999976 89999999964
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.91 E-value=1.7e-05 Score=71.10 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=91.1
Q ss_pred eeEEeEEEEEcCCceechhHHhhhh--CCC---------cCeeeEcccce------EEecc----CCCCCHHHHHHHHHH
Q 012909 8 NVGILALDIYFPPTCVLQEALEVHD--GVS---------KGKYTVGLGQD------CMAFC----SEVEDVISMSLTVVT 66 (453)
Q Consensus 8 ~vgI~~i~~y~P~~~v~~~~l~~~~--g~~---------~~k~~~Gig~r------~~av~----~~~ed~~~la~~Aa~ 66 (453)
.|-|.|||+.+|--. +.+++.+.. |.+ +.++..+++.. ...++ ..-....-|++.|++
T Consensus 2 RVvItG~G~v~p~G~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 2 RVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred eEEEEeceeECCCCC-CHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 478999999999864 666665542 321 12221111100 00000 001235679999999
Q ss_pred HHHHHcCCCcCCcC----EEEEEcccCC---------------------------CCC-----ccHHHHHHHHhcccCCC
Q 012909 67 SLLEKYKIDPTQIG----RLEVGSETVI---------------------------DKS-----KSIKTFLMQIFEKYGNT 110 (453)
Q Consensus 67 ~aL~~agi~~~~Id----~li~~t~s~~---------------------------~~~-----~~~a~~l~~~Lgl~G~~ 110 (453)
+||+++|+++++++ .+++++..+. +.. -..+..+...+|+.
T Consensus 81 ~Al~dAg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~--- 157 (216)
T d1tqya1 81 EAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE--- 157 (216)
T ss_dssp HHHHHHTCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC---
T ss_pred HHHHHhcCCccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc---
Confidence 99999999876654 2444433211 000 12467888899983
Q ss_pred CeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 111 DIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 111 ~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
-+.+-+..||++++.||..|..+|++|.. +.+||.++|..
T Consensus 158 -Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~--d~~ivGG~d~~ 197 (216)
T d1tqya1 158 -GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTP 197 (216)
T ss_dssp -SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred -ccceeeccccchHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence 34677899999999999999999999977 89999999954
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.73 E-value=6.8e-05 Score=66.67 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcC----EEEEEcccCCC--------------------------CCccHHHHHHHHhccc
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIG----RLEVGSETVID--------------------------KSKSIKTFLMQIFEKY 107 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id----~li~~t~s~~~--------------------------~~~~~a~~l~~~Lgl~ 107 (453)
..|+..|+.++|+++|+++++++ .+++++..+.. ..-..+.+|...||+.
T Consensus 71 ~~~~~~a~~~Al~~Ag~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~ 150 (208)
T d1tqyb1 71 TRLALTAADWALQDAKADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMR 150 (208)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCC
T ss_pred cccccccccccchhhhcccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhccccc
Confidence 56999999999999999988764 46667643210 0112467899999984
Q ss_pred CCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeec
Q 012909 108 GNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDT 152 (453)
Q Consensus 108 G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~ 152 (453)
| +.+-+..||++++.||..|.++|++| . +.+||.++|.
T Consensus 151 G----p~~tv~tACaS~l~Ai~~A~~~I~~G-~--d~~lvGG~d~ 188 (208)
T d1tqyb1 151 G----PSSALVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDS 188 (208)
T ss_dssp S----SCEEEECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEEC
T ss_pred c----eeeeccccccHHHHHHHHHHHHHHcC-C--CEEEECcccc
Confidence 3 35667999999999999999999999 7 7899999985
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=96.90 E-value=0.00091 Score=61.04 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=45.9
Q ss_pred cHHHHHHHHhcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 95 SIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 95 ~~a~~l~~~Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
.++.+|...||+.| +.+.+..+|++++.||..|..+|++|.. +.+||.++|..
T Consensus 157 ~~a~~is~~~~l~G----p~~~v~~aCaSsl~Ai~~A~~~l~~G~~--d~aivgg~~~~ 209 (270)
T d2ix4a1 157 MASGHVSMKYGFQG----PNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESS 209 (270)
T ss_dssp HHHHHHHHHHTCCS----CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred hhHHHHHHHhCCCC----CCcccccccchhhHHHHHHHHHHHcCCC--Ceeccccchhh
Confidence 35678899999833 4677899999999999999999999977 89999999875
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0044 Score=55.92 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHcCCCc------CCcCEEEEEcccCC-------------C--------------CCccHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDP------TQIGRLEVGSETVI-------------D--------------KSKSIKTFLMQI 103 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~------~~Id~li~~t~s~~-------------~--------------~~~~~a~~l~~~ 103 (453)
..-+...++..++.++++.+ +.+ .+++++..+. . ..-.++..|...
T Consensus 71 ~~~~~~~~~~~a~~~~~l~~~~~~~~~r~-g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~ 149 (253)
T d2vbaa1 71 ASIYAFLSMEQAIADAGLSPEAYQNNPRV-GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATP 149 (253)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHTTCTTE-EEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHhhccchhccCCCCE-EEEeccccccccccccccccccccCCccccCchhhhccccccccceeccc
Confidence 34588889999999988764 234 3455544321 0 012345677888
Q ss_pred hcccCCCCeeEEeeCCcChhHHHHHHHHHHHHHhCCCCCCeEEEEEeecc
Q 012909 104 FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDTA 153 (453)
Q Consensus 104 Lgl~G~~~~~~~dv~~aC~gg~~AL~~A~~~v~sg~~~~~~aLVv~~d~~ 153 (453)
+|+. -+.+-+..+|++++.||..|..+|++|.. +.+||.++|..
T Consensus 150 ~g~~----Gp~~~i~taCaSsl~Ai~~A~~~i~~G~~--d~alvgg~~~~ 193 (253)
T d2vbaa1 150 FKIH----GVNYSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEEL 193 (253)
T ss_dssp TTCC----SCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECC
T ss_pred cCcc----cceeeeeccchhHHHHHHHHHHhcchhcc--ceeeecchhhh
Confidence 8873 34667789999999999999999999976 89999999876
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=95.99 E-value=0.0099 Score=49.65 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEeeC-CcChhHHHHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDST-NACYGGTAALFNCVNWVE 136 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv~-~aC~gg~~AL~~A~~~v~ 136 (453)
+....++++++|+++|++++|||.+++.. ..+..-..+.+.||+ +++.....+. .|+.++..-...-...++
T Consensus 46 ~~~vp~~i~~~L~~~g~~~~dId~~i~Hq-----a~~~~~~~i~~~lgi--~~~k~~~~~~~~Gn~~sasip~~L~~~~~ 118 (149)
T d1ub7a2 46 VRVMNTATLEAIEKAGLTPEDIRLFVPHQ-----ANLRIIDAARERLGL--PWERVAVNVDRYGNTSTASIPLALKEAVD 118 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECC-----SCHHHHHHHHHTTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccEEEeec-----cchHHHHHHHhhccc--hhhHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 34556788999999999999999998753 345667788899998 4333222232 233333333333334455
Q ss_pred hCC-CCCCeEEEEEeecc--ceeeeec
Q 012909 137 SAS-WDGRYGLVVCTDTA--AVAMLIG 160 (453)
Q Consensus 137 sg~-~~~~~aLVv~~d~~--AvA~Ll~ 160 (453)
.+. .||+++|+++.-.- ..|+|+.
T Consensus 119 ~~~~~~Gd~vll~g~G~G~s~ga~llr 145 (149)
T d1ub7a2 119 AGRIREGDHVLLVSFGAGLTWAAAVLT 145 (149)
T ss_dssp HTSSCTTCEEEEEEEETTTEEEEEEEE
T ss_pred cCCCCCCCEEEEEEEchHhhhEEEEEE
Confidence 543 37889999876654 5555553
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=95.07 E-value=0.1 Score=43.29 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeE-EeeC-Cc-ChhHHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEG-VDST-NA-CYGGTAALFNCVNW 134 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~-~dv~-~a-C~gg~~AL~~A~~~ 134 (453)
+....++++++|+++|++++|||.+++.. ..+.+-..+++.||+ +..... ..+. -| |++.. -...-...
T Consensus 47 v~~vp~~i~~~L~~~gl~~~dId~~i~Hq-----~~~~~~~~v~~~lgi--~~ek~~~~~~~~~GNt~Sas-ip~~L~~~ 118 (153)
T d1mzja2 47 VADVVPAAREALEVAGLTVGDLVAFVPHQ-----ANLRIIDVLVDRLGV--PEHVVVSRDAEDTGNTSSAS-VALALDRL 118 (153)
T ss_dssp HHHHHHHHHHHHHTTTCCGGGCSEEEECC-----SCHHHHHHHHHHHTC--CTTSEECCTHHHHCBCTTHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCCEEEEcC-----CcHHHHHHHHHHhCC--CchhcchhhhhhcCCcccch-HHHHHHHH
Confidence 45556688999999999999999999754 245566788999998 443322 2232 23 44432 22223334
Q ss_pred HHhCC-CCCCeEEEEEeecc---ceeeeecCCCC
Q 012909 135 VESAS-WDGRYGLVVCTDTA---AVAMLIGPDAP 164 (453)
Q Consensus 135 v~sg~-~~~~~aLVv~~d~~---AvA~Ll~~~~~ 164 (453)
++.+. .+|+++|+++.-.- ++|+|.-+.+|
T Consensus 119 ~~~~~~~~Gd~ill~~fG~G~s~~~~~l~~~~~~ 152 (153)
T d1mzja2 119 VRSGAVPGGGPALMIGFGAGLSYAGQALLLPDPP 152 (153)
T ss_dssp HHHTSSCTTCEEEEEEEETTTEEEEEEEECCCCC
T ss_pred HHcCCCCCCCEEEEEEEchhhhhhEEEEEecCCC
Confidence 45542 36789888875543 56666655543
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.1 Score=43.04 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe-e---CC-cChhHHHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD-S---TN-ACYGGTAALFNC 131 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d-v---~~-aC~gg~~AL~~A 131 (453)
++....++++++|+++|++++|||.+++.. .++.+-..+++.||+ ++.-.... + +| ++++-..+|..+
T Consensus 46 a~~~v~~~i~~~L~~~gl~~~dId~~i~Hq-----a~~~i~~~v~~~lgl--~~ek~~~~~~~~~GNt~sasip~~L~~a 118 (148)
T d1u6ea2 46 AAFKMGDVGRRAMDAAGVRPDQIDVFVPHQ-----ANSRINELLVKNLQL--RPDAVVANDIEHTGNTSAASIPLAMAEL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEEECC-----SCHHHHHHHHHHHTC--CTTCEECCTHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccEEEecc-----ccHHHHHHHHHhcCC--CchhhhhhhHHhhCCCccchHHHHHHHH
Confidence 345567789999999999999999999753 345566788899998 44332322 2 22 233333444444
Q ss_pred HHHHHhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 132 VNWVESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 132 ~~~v~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
. +.+. .+|+++|+++.-.- .+|+|+
T Consensus 119 ~---~~g~i~~Gd~vll~gfG~G~s~~a~ll 146 (148)
T d1u6ea2 119 L---TTGAAKPGDLALLIGYGAGLSYAAQVV 146 (148)
T ss_dssp H---HHTSSCTTCEEEEEEEETTTEEEEEEE
T ss_pred H---HcCCCCCCCEEEEEEEchhhhheEEEE
Confidence 3 3442 26788888764322 444444
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.098 Score=42.92 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEee---C-CcChhHHHHHHHHHH
Q 012909 58 ISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDS---T-NACYGGTAALFNCVN 133 (453)
Q Consensus 58 ~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~dv---~-~aC~gg~~AL~~A~~ 133 (453)
+....++++++|+++|++++|||.+++.. .++..-..+++.||+ +..-....+ + .++++-..+|..+..
T Consensus 43 v~~~~~~i~~~L~~~g~~~~dId~~i~Hq-----~~~~~~~~~~~~l~l--~~~k~~~~~~~~GN~~sasip~~L~~~~~ 115 (143)
T d1hnja2 43 VTELAHIVDETLAANNLDRSQLDWLVPHQ-----ANLRIISATAKKLGM--SMDNVVVTLDRHGNTSAASVPCALDEAVR 115 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEECC-----SCHHHHHHHHHHTTC--CGGGBCCCHHHHCBCGGGHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcccccceEEecc-----CchHHHHHHHHhCcc--chhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 45567789999999999999999998643 344566778899998 433222222 2 234444444444443
Q ss_pred HHHhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 134 WVESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 134 ~v~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
.+. .+|+++|+++.-.- .+++|+
T Consensus 116 ---~~~~~~Gd~vll~g~G~G~s~g~~ll 141 (143)
T d1hnja2 116 ---DGRIKPGQLVLLEAFGGGFTWGSALV 141 (143)
T ss_dssp ---TTCSCTTCEEEEEEEETTTEEEEEEE
T ss_pred ---hCCCCCCCEEEEEEEehhhhhEEEEE
Confidence 432 26789999876543 444443
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=91.93 E-value=0.45 Score=37.83 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-------eeEEeeCCcChhHHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-------IEGVDSTNACYGGTAALFNCVN 133 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-------~~~~dv~~aC~gg~~AL~~A~~ 133 (453)
-+.|++++|+++|++.+|||.+.+.- ..-+.....++.||+ ..+ ..++-.-.||+|.-..+..+..
T Consensus 24 Pv~A~~~lL~r~gl~~~Did~~EinE-----AFA~q~la~~~~l~i--d~~kvN~~GGaiAlGHP~GaSGarl~~tl~~~ 96 (124)
T d1m3ka2 24 PIPASRKALERAGWKIGDLDLVEANE-----AFAAQACAVNKDLGW--DPSIVNVNGGAIAIGHPIGASGARILNTLLFE 96 (124)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECC-----SBHHHHHHHHHHHCC--CGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCChhcccHHHhcc-----cchhheeeehHhhCC--ChhhcCCCCCccccccCcCccchhHHHHHHHH
Confidence 36899999999999999999998743 122445567788886 221 1111122488888778888888
Q ss_pred HHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 134 WVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 134 ~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
+-+.+ +++.|+-.+--- ++||+|++
T Consensus 97 L~~~~---~~~Glas~C~gGG~g~A~liE~ 123 (124)
T d1m3ka2 97 MKRRG---ARKGLATLCIGGGMGVAMCIES 123 (124)
T ss_dssp HHHHT---CSEEEEEEEETTTEEEEEEEEC
T ss_pred HHhcC---CCEEEEEecccccceeEEEEEe
Confidence 76654 467765433222 88888864
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=89.27 E-value=0.86 Score=36.18 Aligned_cols=91 Identities=9% Similarity=0.118 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCeeEEe-------eC--CcChhHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVD-------ST--NACYGGTAALFNC 131 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~~~d-------v~--~aC~gg~~AL~~A 131 (453)
-+.|++++|+++|++++|||.+...- ..-+..-..++.+++ .-+-..+. ++ .||+|.-..+...
T Consensus 23 P~~A~~~~L~r~gl~~~Did~~EinE-----AFAaq~l~~~~~~~l--~~d~~kvN~~GGaIAlGHP~GASGari~~tl~ 95 (125)
T d1ulqa2 23 PVPATRKALERAGLSFSDLGLIELNE-----AFAAQALAVLREWSL--SMEDQRLNPNGGAIALGHPLGASGARILTTLV 95 (125)
T ss_dssp HHHHHHHHHHHTTCCGGGCSEEEECC-----SBHHHHHHHHHHHTC--CTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHhHhhccCcCccccchheecc-----ccchhHHHHHHHhhc--cCchhhcCCCCCcccccCCccccchhHHHHHH
Confidence 47899999999999999999998732 112233344555443 11111111 22 2666666666666
Q ss_pred HHHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 132 VNWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 132 ~~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
..+-+.+ +++.++-.+--- +.||+|++
T Consensus 96 ~~L~~~~---~~~G~as~C~gGG~g~A~~iE~ 124 (125)
T d1ulqa2 96 HEMRRRK---VQFGLATMCIGVGQGIAVVVEG 124 (125)
T ss_dssp HHHHHTT---CSEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHhcC---CCEEEEEecccccceeEEEEEe
Confidence 6655543 466665433322 88888764
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=88.59 E-value=0.77 Score=36.65 Aligned_cols=93 Identities=10% Similarity=0.118 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccC--------CCCeeEEeeCCcChhHHHHHHHHH
Q 012909 61 SLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYG--------NTDIEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 61 a~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G--------~~~~~~~dv~~aC~gg~~AL~~A~ 132 (453)
-+.|++++|+++|++++|||.+...-- ..+.+..+++.++..+ +-...++-.-.||+|.-..+..+.
T Consensus 25 p~~A~~klL~ragl~~~did~~EinEA-----FA~q~l~~~~~~~~~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~~ 99 (128)
T d1wdkc2 25 PVPATQKALKRAGLNMADIDFIELNEA-----FAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLN 99 (128)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEEECCS-----BHHHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhcCccccccceEEeecc-----cchhhhhhhhhcccccCCcceecCCCCcccccccccccchhHHHHHHH
Confidence 367899999999999999999987321 1122333334433200 112222222347777777777777
Q ss_pred HHHHhCCCCCCeEEEEEeecc--ceeeeecC
Q 012909 133 NWVESASWDGRYGLVVCTDTA--AVAMLIGP 161 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~ 161 (453)
.+-+.+ +++.|+-.+--- ++||+|++
T Consensus 100 ~L~~~~---~~~Glas~C~gGG~g~A~~iEr 127 (128)
T d1wdkc2 100 VMKQNG---GTFGLSTMCIGLGQGIATVFER 127 (128)
T ss_dssp HHHHTT---CSEEEEEEEETTTEEEEEEEEC
T ss_pred HHHhcC---CCEEEEEecccccceeEEEEEe
Confidence 766644 467665433222 88888864
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.74 E-value=1.1 Score=35.55 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCC-------eeEEeeCCcChhHHHHHHHHH
Q 012909 60 MSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTD-------IEGVDSTNACYGGTAALFNCV 132 (453)
Q Consensus 60 la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~-------~~~~dv~~aC~gg~~AL~~A~ 132 (453)
=-+.|++++|+++|++++|||.+.+.- ..-+.....++.|++ ..+ ..++-.-.||+|.-..+....
T Consensus 25 gPv~Ai~klL~r~gl~~~Did~~EinE-----AFA~q~l~~~~~l~i--d~~kvN~~GGaiAlGHP~GaSGarlv~~l~~ 97 (124)
T d1afwa2 25 GPAYAIPKVLEATGLQVQDIDIFEINE-----AFAAQALYCIHKLGI--DLNKVNPRGGAIALGHPLGCTGARQVATILR 97 (124)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECC-----SBHHHHHHHHHHHTC--CGGGBSTTCCHHHHCBCTTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcccCcEEEecc-----chhHHHHHHHHHcCC--ChhhccccCccceecCCcCCchHHHHHHHHH
Confidence 347899999999999999999998743 122445566777876 221 111112236666665555555
Q ss_pred HHHHhCCCCCCeEEEEEeecc--ceeeeecCC
Q 012909 133 NWVESASWDGRYGLVVCTDTA--AVAMLIGPD 162 (453)
Q Consensus 133 ~~v~sg~~~~~~aLVv~~d~~--AvA~Ll~~~ 162 (453)
.+ + .+++.|+-.+--- ++|+|++++
T Consensus 98 ~L-~----~~~~glas~C~ggG~G~a~~ier~ 124 (124)
T d1afwa2 98 EL-K----KDQIGVVSMCIGTGMGAAAIFIKE 124 (124)
T ss_dssp HS-C----TTCEEEEEEEETTTEEEEEEEEEC
T ss_pred Hh-c----cCCEEEEEEcccCCcEEEEEEEeC
Confidence 53 3 2366655322221 788888753
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.24 E-value=1.3 Score=36.06 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCcCEEEEEcccCCCCCccHHHHHHHHhcccCCCCee--EEee----C-CcChhHHHHHH
Q 012909 57 VISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIE--GVDS----T-NACYGGTAALF 129 (453)
Q Consensus 57 ~~~la~~Aa~~aL~~agi~~~~Id~li~~t~s~~~~~~~~a~~l~~~Lgl~G~~~~~--~~dv----~-~aC~gg~~AL~ 129 (453)
.+.-...+.+++|+++|++++|||.+++.. ..+.+-..+++.||+ ++.-. ..++ + .+.++-..+|
T Consensus 41 ~i~~~~~~i~~~l~~~g~~~~did~~~~Hq-----~~~~i~~~i~~~Lgl--~~~k~~~s~~~l~~~GN~~sasi~~~L- 112 (148)
T d1u0ma2 41 TMEPLAPALKELAGEHGWDASDLDFYIVHA-----GGPRILDDLSTFLEV--DPHAFRFSRATLTEYGNIASAVVLDAL- 112 (148)
T ss_dssp GHHHHHHHHHHHHHTTSCCSSCCSCCEEEC-----SHHHHHHHHHHHSCS--CGGGGHHHHHHHHHTCBCTTHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCEEEECC-----CCHHHHHHHHHHhCC--ChhhhhHHHHHHHhcCCCCcchHHHHH-
Confidence 445567889999999999999999988754 234555678899998 43321 1221 2 2333333333
Q ss_pred HHHHHHHhCC-CCCCeEEEEEeecc--ceeeee
Q 012909 130 NCVNWVESAS-WDGRYGLVVCTDTA--AVAMLI 159 (453)
Q Consensus 130 ~A~~~v~sg~-~~~~~aLVv~~d~~--AvA~Ll 159 (453)
...++.+. .+|+++|+++.-.- +.|+|+
T Consensus 113 --~~~~~~~~~~~Gd~ill~gfG~G~s~~~~ll 143 (148)
T d1u0ma2 113 --RRLFDEGGVEEGARGLLAGFGPGITAEMSLG 143 (148)
T ss_dssp --HHHHHSCCCCSSCCCEEEEEETTTEEEEEEE
T ss_pred --HHHHHcCCCCCCCEEEEEEEchHhEeeEEEE
Confidence 33444443 25678887765432 555555
|