Citrus Sinensis ID: 012928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKVRFLEF
cccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEcccccEEEccccEEEEEEccccccccEEEEEccccccccccccEEEEEccEEEEEEEEEEccEEEEEEEEccEEccccccccccccccccccccccHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccccEEEccccHHccccHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEc
ccEEEccccccEEEEccccccccccccHHHHHccccccccccEEEEccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEccccccEEEEcccEEEEEEccccccccEEEEccccHHHHcccccEEEEccccEEEEEEEEcccEEEEEEcccEEcccccEEEccccccccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEcccHHHHcHHHHHHHccEEEEEHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEccccHHHHccccccHHHHHHHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccc
MAAAVNNmctdcvlsssrnlsdALSFHSKaitttrsrttrrgcsvshqkqrFSIRSMrishdnhapkiSLFEESLSSifelpngqctpgkgvvgpnarrktkivctigpstssREMIWKLAEEGMNVARlnmshgdhashQKTIDLVKEYNSQFEDKAVAIMLDtkgpevrsgdvpqpiilkegqefnftikrgvstedtvsvnyddfvndvevGDILLVDGGMMSLAVKSKTKDLVKCIVVdggelksrrhlnvrgksanlpsitdkdwedikfgvdnqvDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIesadsipnlhsiisasdgamvargdlgaelpiedvplLQEDIIRRCRSMQKPVIVATNMLesmidhptptraevSDIAIAVREGADAVmlsgetahgkfplkAVKVMHTVALrtesslpvsitpptqfsahkvrflef
MAAAVNNMCTDCVLSSSRNLSDALSfhskaitttrsrttrrgcsvshqkqrfsirsmrishdnhAPKISLFEESLSSIFELpngqctpgkgvvgpnarrktkivctigpstssreMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDtkgpevrsgdvpqpiilkegqefnfTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLavksktkdlVKCIVVdggelksrrhlnvrgksanlpsitdkdweDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKiesadsipNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRtesslpvsitpptqfsahkvrflef
MAAAVNNMCTDCVLSSSRNLSDALSFHSKAItttrsrttrrGCSVSHQKQRFSIRSMRISHDNHAPKislfeeslssifelPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKVRFLEF
********CTDCVL************************************************************LSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARL************TIDLVKEYNSQFEDKAVAIMLDT*********VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT************************
*********T***LSSSRNLSD**************************************************************************ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV******************
*********TDCVLSSSRNLSDALSFHSKAI*******************RFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKVRFLEF
*AAAVNNMCTDCVLSSSRNLSDALSFH*KAITTTR*R***RGCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSA********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKVRFLEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q40546 562 Pyruvate kinase isozyme G N/A no 0.814 0.656 0.869 0.0
Q93Z53 571 Plastidial pyruvate kinas yes no 0.951 0.754 0.750 0.0
Q9FLW9 579 Plastidial pyruvate kinas no no 0.830 0.649 0.781 1e-171
P55964 418 Pyruvate kinase isozyme G N/A no 0.666 0.722 0.875 1e-153
Q40545 593 Pyruvate kinase isozyme A N/A no 0.741 0.566 0.5 3e-89
Q9LIK0 596 Plastidial pyruvate kinas no no 0.741 0.563 0.511 6e-89
Q43117 583 Pyruvate kinase isozyme A N/A no 0.741 0.576 0.5 1e-87
Q6GG09 585 Pyruvate kinase OS=Staphy yes no 0.735 0.569 0.483 6e-86
Q7A0N4 585 Pyruvate kinase OS=Staphy yes no 0.735 0.569 0.483 1e-85
Q6G8M9 585 Pyruvate kinase OS=Staphy yes no 0.735 0.569 0.483 1e-85
>sp|Q40546|KPYG_TOBAC Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/369 (86%), Positives = 346/369 (93%)

Query: 79  FELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA 138
           F +P+   + G+  V  N+ RKTKIVCTIGPSTSSREMIWKLAE GMNVARLNMSHGDHA
Sbjct: 71  FNVPSSGYSLGQESVYLNSPRKTKIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHA 130

Query: 139 SHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTE 198
           SHQ+TIDLVKEYN+QFEDK +AIMLDTKGPEV SGDVP+PI+LKEGQEFNF+IKRGVSTE
Sbjct: 131 SHQRTIDLVKEYNAQFEDKVIAIMLDTKGPEVISGDVPKPILLKEGQEFNFSIKRGVSTE 190

Query: 199 DTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGK 258
           DTVSVNYDDF+NDVE GDILLVDGGMMSLAVKSKT D+VKC V+DGGELKSRRHLNVRGK
Sbjct: 191 DTVSVNYDDFINDVEAGDILLVDGGMMSLAVKSKTSDIVKCEVIDGGELKSRRHLNVRGK 250

Query: 259 SANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA 318
           SA LPSIT+KDW+DIKFGV+NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA
Sbjct: 251 SATLPSITEKDWDDIKFGVNNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA 310

Query: 319 DSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM 378
           DSIPNLHSIISASDGAMVARGDLGAELPIE+VPLLQEDIIRRC+SMQKPVIVATNMLESM
Sbjct: 311 DSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQSMQKPVIVATNMLESM 370

Query: 379 IDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSIT 438
           IDHPTPTRAEVSDI+IAVREGADAVMLSGETAHGK+PLKAVKVMH VALRTESSL  S +
Sbjct: 371 IDHPTPTRAEVSDISIAVREGADAVMLSGETAHGKYPLKAVKVMHIVALRTESSLQKSTS 430

Query: 439 PPTQFSAHK 447
            P+Q +A+K
Sbjct: 431 SPSQSAAYK 439

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|Q93Z53|PKP3_ARATH Plastidial pyruvate kinase 3, chloroplastic OS=Arabidopsis thaliana GN=PKP3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLW9|PKP2_ARATH Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1 Back     alignment and function description
>sp|P55964|KPYG_RICCO Pyruvate kinase isozyme G, chloroplastic (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q40545|KPYA_TOBAC Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q9LIK0|PKP1_ARATH Plastidial pyruvate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PKP1 PE=1 SV=1 Back     alignment and function description
>sp|Q43117|KPYA_RICCO Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|Q6GG09|KPYK_STAAR Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=1 SV=1 Back     alignment and function description
>sp|Q7A0N4|KPYK_STAAW Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1 Back     alignment and function description
>sp|Q6G8M9|KPYK_STAAS Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
224126535 568 predicted protein [Populus trichocarpa] 0.971 0.774 0.762 0.0
224138056545 predicted protein [Populus trichocarpa] 0.944 0.785 0.772 0.0
2497542 562 RecName: Full=Pyruvate kinase isozyme G, 0.814 0.656 0.869 0.0
449461531 573 PREDICTED: pyruvate kinase isozyme G, ch 0.821 0.649 0.862 0.0
359474560 572 PREDICTED: pyruvate kinase isozyme G, ch 0.885 0.701 0.793 0.0
297742108527 unnamed protein product [Vitis vinifera] 0.836 0.719 0.841 0.0
297846220 570 hypothetical protein ARALYDRAFT_473436 [ 0.949 0.754 0.748 0.0
18398434 571 plastidial pyruvate kinase 3 [Arabidopsi 0.951 0.754 0.750 0.0
8920620 567 Strong similarity to a pyruvate kinase i 0.942 0.753 0.743 0.0
356495551545 PREDICTED: pyruvate kinase isozyme G, ch 0.777 0.645 0.872 0.0
>gi|224126535|ref|XP_002329578.1| predicted protein [Populus trichocarpa] gi|222870287|gb|EEF07418.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/464 (76%), Positives = 381/464 (82%), Gaps = 24/464 (5%)

Query: 3   AAVNNMCTDC-----VLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSM 57
           A +NNM T       +LSSS NLSD     S+          R+ C    Q  +F++RSM
Sbjct: 2   ATINNMSTRMCRDHRILSSSGNLSDVFVLESRF---------RKRCFF--QNSKFTVRSM 50

Query: 58  RISHDNHAPKIS------LFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPST 111
           + +  N   K++         E +SS FEL     T GK  + P ARRKTKIVCTIGPST
Sbjct: 51  KANEQNQTRKLASSNGPLTASEKVSSPFELLTNNQTLGKENINPIARRKTKIVCTIGPST 110

Query: 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVR 171
           SSREMIWKLAE GMNVARLNMSHGDH+SH+KTIDLVKEYN+Q +D  +AIMLDTKGPEVR
Sbjct: 111 SSREMIWKLAETGMNVARLNMSHGDHSSHKKTIDLVKEYNAQSDDNVIAIMLDTKGPEVR 170

Query: 172 SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231
           SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDF+NDVE GD+LLVDGGMMSL+VKS
Sbjct: 171 SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFINDVEAGDMLLVDGGMMSLSVKS 230

Query: 232 KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKD 291
           KTKD VKC+VVDGGELKSRRHLNVRGKSA LPSITDKDWEDIKFGVDNQVDFYAVSFVKD
Sbjct: 231 KTKDAVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKD 290

Query: 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVP 351
           AKVVHELKDYL SCNADIHVIVKIESADSIPNL SIISASDGAMVARGDLGAELPIEDVP
Sbjct: 291 AKVVHELKDYLTSCNADIHVIVKIESADSIPNLQSIISASDGAMVARGDLGAELPIEDVP 350

Query: 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411
           LLQEDIIRRC +MQKPV VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH
Sbjct: 351 LLQEDIIRRCHNMQKPVTVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 410

Query: 412 GKFPLKAVKVMHTVALRTESSLPVSITPPTQ--FSAHKVRFLEF 453
           GK+PLKAVKVMHTVALRTESSLP + T PT   + +H      F
Sbjct: 411 GKYPLKAVKVMHTVALRTESSLPFNSTAPTHNVYKSHMGEMFAF 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224138056|ref|XP_002326507.1| predicted protein [Populus trichocarpa] gi|222833829|gb|EEE72306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2497542|sp|Q40546.1|KPYG_TOBAC RecName: Full=Pyruvate kinase isozyme G, chloroplastic; Flags: Precursor gi|482938|emb|CAA82223.1| Pyruvate kinase; plastid isozyme [Nicotiana tabacum] gi|12054705|emb|CAA49996.1| pyruvate kinase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449461531|ref|XP_004148495.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Cucumis sativus] gi|449523171|ref|XP_004168598.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474560|ref|XP_002278359.2| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742108|emb|CBI33895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297846220|ref|XP_002890991.1| hypothetical protein ARALYDRAFT_473436 [Arabidopsis lyrata subsp. lyrata] gi|297336833|gb|EFH67250.1| hypothetical protein ARALYDRAFT_473436 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398434|ref|NP_564402.1| plastidial pyruvate kinase 3 [Arabidopsis thaliana] gi|75305901|sp|Q93Z53.1|PKP3_ARATH RecName: Full=Plastidial pyruvate kinase 3, chloroplastic; Short=PKp3; AltName: Full=Pyruvate kinase I; AltName: Full=Pyruvate kinase isozyme B2, chloroplastic; Short=PKP-BETA2; Short=Plastidic pyruvate kinase beta subunit 2; Flags: Precursor gi|16648691|gb|AAL25538.1| At1g32440/F5D14_7 [Arabidopsis thaliana] gi|24797052|gb|AAN64538.1| At1g32440/F5D14_7 [Arabidopsis thaliana] gi|332193366|gb|AEE31487.1| plastidial pyruvate kinase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8920620|gb|AAF81342.1|AC007767_22 Strong similarity to a pyruvate kinase isozyme G, chloroplast precursor from Nicotiana tabacum gb|Z28374. It contains a pyruvate kinase domain PF|00224. EST gb|AI996399 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495551|ref|XP_003516640.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
TAIR|locus:2033760 571 PKp3 "plastidial pyruvate kina 0.964 0.765 0.747 9.7e-167
TAIR|locus:2176912 579 PKP-BETA1 "plastidic pyruvate 0.779 0.609 0.818 2.9e-151
TAIR|locus:2084583 596 PKP-ALPHA [Arabidopsis thalian 0.741 0.563 0.511 3.2e-81
TIGR_CMR|BA_4843 585 BA_4843 "pyruvate kinase" [Bac 0.737 0.570 0.459 4e-74
UNIPROTKB|P0AD61 470 pykF "pyruvate kinase I monome 0.730 0.704 0.452 8.4e-74
UNIPROTKB|Q9KUN0 470 VC_0485 "Pyruvate kinase" [Vib 0.746 0.719 0.446 2.5e-72
TIGR_CMR|CHY_1144 583 CHY_1144 "pyruvate kinase" [Ca 0.732 0.569 0.452 2.5e-72
TIGR_CMR|VC_0485 470 VC_0485 "pyruvate kinase I" [V 0.746 0.719 0.446 2.5e-72
MGI|MGI:97591 531 Pkm "pyruvate kinase, muscle" 0.748 0.638 0.435 5.5e-70
UNIPROTKB|F1NW43 532 PKM2 "Pyruvate kinase" [Gallus 0.748 0.637 0.430 1.4e-69
TAIR|locus:2033760 PKp3 "plastidial pyruvate kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
 Identities = 331/443 (74%), Positives = 363/443 (81%)

Query:    13 VLSSSRNLSDALSFHSKAIXXXXXXXXXXGCSVSHQKQRFSIRSMRISHDNHAPKXXXXX 72
             VLSSSRN+  +LS     +            S+S ++   S+RS++IS D+  PK     
Sbjct:    17 VLSSSRNIGVSLS----PLRRTLIGAGVRSTSISLRQCSLSVRSIKISEDSRKPKAYAEN 72

Query:    73 XXXXXXXXXPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNM 132
                       +            ++RRKTKIVCTIGPS+SSREMIWKLAE GMNVARLNM
Sbjct:    73 GAFDVGVLDSSSYRLADSRTSSNDSRRKTKIVCTIGPSSSSREMIWKLAEAGMNVARLNM 132

Query:   133 SHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIK 192
             SHGDHASHQ TIDLVKEYNS F DKA+AIMLDTKGPEVRSGDVPQPI L+EGQEFNFTIK
Sbjct:   133 SHGDHASHQITIDLVKEYNSLFVDKAIAIMLDTKGPEVRSGDVPQPIFLEEGQEFNFTIK 192

Query:   193 RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252
             RGVS +DTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT DLVKC+V+DGGEL+SRRH
Sbjct:   193 RGVSLKDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTSDLVKCVVIDGGELQSRRH 252

Query:   253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVI 312
             LNVRGKSA LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK+YLK+C+ADI VI
Sbjct:   253 LNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKNYLKTCSADISVI 312

Query:   313 VKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372
             VKIESADSI NL SIISA DGAMVARGDLGAELPIE+VPLLQE+IIRRCRS+ KPVIVAT
Sbjct:   313 VKIESADSIKNLPSIISACDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSIHKPVIVAT 372

Query:   373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432
             NMLESMI+HPTPTRAEVSDIAIAVREGADA+MLSGETAHGKFPLKAV VMHTVALRTE+S
Sbjct:   373 NMLESMINHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVNVMHTVALRTEAS 432

Query:   433 LPV--SITPPTQFSAHKVRFLEF 453
             LPV  S +  T +  H  +   F
Sbjct:   433 LPVRTSASRTTAYKGHMGQMFAF 455
GO:0000287 "magnesium ion binding" evidence=IEA;IDA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004743 "pyruvate kinase activity" evidence=IEA;ISS;IDA
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0030955 "potassium ion binding" evidence=IEA;IDA
GO:0006633 "fatty acid biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2176912 PKP-BETA1 "plastidic pyruvate kinase beta subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084583 PKP-ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4843 BA_4843 "pyruvate kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0AD61 pykF "pyruvate kinase I monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUN0 VC_0485 "Pyruvate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1144 CHY_1144 "pyruvate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0485 VC_0485 "pyruvate kinase I" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
MGI|MGI:97591 Pkm "pyruvate kinase, muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW43 PKM2 "Pyruvate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40546KPYG_TOBAC2, ., 7, ., 1, ., 4, 00.86990.81450.6565N/Ano
Q93Z53PKP3_ARATH2, ., 7, ., 1, ., 4, 00.75050.95140.7548yesno
P55964KPYG_RICCO2, ., 7, ., 1, ., 4, 00.87540.66660.7224N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.400.946
3rd Layer2.7.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
PLN02623 581 PLN02623, PLN02623, pyruvate kinase 0.0
PRK05826 465 PRK05826, PRK05826, pyruvate kinase; Provisional 1e-153
TIGR01064 473 TIGR01064, pyruv_kin, pyruvate kinase 1e-149
COG0469 477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 1e-149
cd00288 480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 1e-133
pfam00224348 pfam00224, PK, Pyruvate kinase, barrel domain 1e-130
PLN02762 509 PLN02762, PLN02762, pyruvate kinase complex alpha 1e-128
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 1e-126
PRK09206 470 PRK09206, PRK09206, pyruvate kinase; Provisional 1e-116
PRK06247 476 PRK06247, PRK06247, pyruvate kinase; Provisional 1e-110
PLN02461 511 PLN02461, PLN02461, Probable pyruvate kinase 9e-98
PTZ00066 513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 4e-94
PRK06739352 PRK06739, PRK06739, pyruvate kinase; Validated 4e-83
PTZ00300 454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 9e-74
PLN02765 526 PLN02765, PLN02765, pyruvate kinase 3e-60
PRK08187493 PRK08187, PRK08187, pyruvate kinase; Validated 4e-34
PRK14725608 PRK14725, PRK14725, pyruvate kinase; Provisional 3e-28
PRK14725 608 PRK14725, PRK14725, pyruvate kinase; Provisional 4e-05
TIGR03239249 TIGR03239, GarL, 2-dehydro-3-deoxyglucarate aldola 0.003
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information 
 Score =  752 bits (1944), Expect = 0.0
 Identities = 327/459 (71%), Positives = 362/459 (78%), Gaps = 14/459 (3%)

Query: 1   MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSR--TTRRGCSVSHQKQRFSIRSMR 58
            A  V     D  + SS + S +L   S     ++      R    V+ +++  +  S+R
Sbjct: 2   AAQVVATRSIDSSILSSSSGSVSLDLLSPLSFASKVLGSEARARRRVAVRRRAVTAASLR 61

Query: 59  ----------ISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIG 108
                     +S ++         E +    +      T       P+ RRKTKIVCTIG
Sbjct: 62  SKSQETEVIPVSPEDGGANFVEDNEEVLLEIQQLGE--TAVGMWSKPSVRRKTKIVCTIG 119

Query: 109 PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGP 168
           PST++REMIWKLAE GMNVARLNMSHGDHASHQK IDLVKEYN+Q +D  +AIMLDTKGP
Sbjct: 120 PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179

Query: 169 EVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLA 228
           EVRSGD+PQPI+L+EGQEF FTIKRGVSTED VSVNYDDFVNDVEVGD+LLVDGGMMSLA
Sbjct: 180 EVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLA 239

Query: 229 VKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF 288
           VKSKT D VKC VVDGGELKSRRHLNVRGKSA LPSIT+KDWEDIKFGV+N+VDFYAVSF
Sbjct: 240 VKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSF 299

Query: 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE 348
           VKDA+VVHELKDYLKSCNADIHVIVKIESADSIPNLHSII+ASDGAMVARGDLGAELPIE
Sbjct: 300 VKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 359

Query: 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408
           +VPLLQE+IIRRCRSM KPVIVATNMLESMI HPTPTRAEVSDIAIAVREGADAVMLSGE
Sbjct: 360 EVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 419

Query: 409 TAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHK 447
           TAHGKFPLKAVKVMHTVALRTE++LP   TPP    A K
Sbjct: 420 TAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFK 458

Length = 581
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|132283 TIGR03239, GarL, 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
PLN02762 509 pyruvate kinase complex alpha subunit 100.0
PTZ00066 513 pyruvate kinase; Provisional 100.0
PLN02623 581 pyruvate kinase 100.0
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 100.0
COG0469 477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
PRK06739352 pyruvate kinase; Validated 100.0
PLN02461 511 Probable pyruvate kinase 100.0
PRK09206 470 pyruvate kinase; Provisional 100.0
PRK06247 476 pyruvate kinase; Provisional 100.0
PLN02765 526 pyruvate kinase 100.0
cd00288 480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
PRK05826 465 pyruvate kinase; Provisional 100.0
PRK14725608 pyruvate kinase; Provisional 100.0
TIGR01064 473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PRK08187493 pyruvate kinase; Validated 100.0
KOG2323 501 consensus Pyruvate kinase [Carbohydrate transport 100.0
PTZ00300 454 pyruvate kinase; Provisional 100.0
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 99.68
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 99.68
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 99.63
COG3836255 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.61
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 99.59
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.57
TIGR01588288 citE citrate lyase, beta subunit. This is a model 99.35
TIGR01418782 PEP_synth phosphoenolpyruvate synthase. Also calle 99.29
PRK06464795 phosphoenolpyruvate synthase; Validated 99.27
TIGR01417565 PTS_I_fam phosphoenolpyruvate-protein phosphotrans 99.16
PRK11177575 phosphoenolpyruvate-protein phosphotransferase; Pr 99.02
COG2301283 CitE Citrate lyase beta subunit [Carbohydrate tran 99.0
cd00727 511 malate_synt_A Malate synthase A (MSA), present in 98.67
cd00480 511 malate_synt Malate synthase catalyzes the Claisen 98.66
PRK09255 531 malate synthase; Validated 98.56
TIGR01344 511 malate_syn_A malate synthase A. This model represe 98.51
PF02896293 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel 98.31
PLN02626 551 malate synthase 98.15
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 97.47
TIGR01828856 pyru_phos_dikin pyruvate, phosphate dikinase. This 97.16
COG1080574 PtsA Phosphoenolpyruvate-protein kinase (PTS syste 97.12
PRK09279879 pyruvate phosphate dikinase; Provisional 96.72
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 96.66
PRK08649368 inosine 5-monophosphate dehydrogenase; Validated 96.45
TIGR02751 506 PEPCase_arch phosphoenolpyruvate carboxylase, arch 96.37
cd00381325 IMPDH IMPDH: The catalytic domain of the inosine m 95.95
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 95.94
PRK13655 494 phosphoenolpyruvate carboxylase; Provisional 95.88
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 95.79
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 95.5
PRK00009 911 phosphoenolpyruvate carboxylase; Reviewed 95.33
TIGR01304369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 95.2
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 94.74
COG3605756 PtsP Signal transduction protein containing GAF an 94.72
PTZ00398 974 phosphoenolpyruvate carboxylase; Provisional 94.71
PLN02274505 inosine-5'-monophosphate dehydrogenase 94.44
COG0574740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 94.39
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 93.96
TIGR03151307 enACPred_II putative enoyl-(acyl-carrier-protein) 93.67
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 93.45
PRK07107502 inosine 5-monophosphate dehydrogenase; Validated 93.29
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 93.24
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 93.02
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 92.84
TIGR01306321 GMP_reduct_2 guanosine monophosphate reductase, ba 92.53
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 92.15
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 92.11
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 91.88
COG2352 910 Ppc Phosphoenolpyruvate carboxylase [Energy produc 91.57
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 91.45
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 91.45
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 91.22
PF00311 794 PEPcase: Phosphoenolpyruvate carboxylase; InterPro 91.19
PTZ00005417 phosphoglycerate kinase; Provisional 90.89
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 90.84
PRK05567486 inosine 5'-monophosphate dehydrogenase; Reviewed 90.83
PF14010 491 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3 90.7
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 90.36
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 90.27
KOG2550503 consensus IMP dehydrogenase/GMP reductase [Nucleot 90.23
TIGR01949258 AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep 89.52
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 89.48
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 89.41
PRK05581220 ribulose-phosphate 3-epimerase; Validated 89.14
PLN02334229 ribulose-phosphate 3-epimerase 89.1
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 89.08
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 89.08
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 88.88
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 88.61
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 88.21
PRK07226267 fructose-bisphosphate aldolase; Provisional 87.8
PF01791236 DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 87.56
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 87.03
PRK13813215 orotidine 5'-phosphate decarboxylase; Provisional 86.98
PRK00507221 deoxyribose-phosphate aldolase; Provisional 86.94
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 86.65
PRK13307391 bifunctional formaldehyde-activating enzyme/3-hexu 86.34
PLN03034481 phosphoglycerate kinase; Provisional 86.33
PRK08091228 ribulose-phosphate 3-epimerase; Validated 85.9
PF00682237 HMGL-like: HMGL-like of this family is not conserv 85.85
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 85.81
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 85.67
PRK00694 606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 85.64
PRK04302223 triosephosphate isomerase; Provisional 85.47
PRK08227264 autoinducer 2 aldolase; Validated 85.39
TIGR02090 363 LEU1_arch isopropylmalate/citramalate/homocitrate 85.13
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 85.06
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 85.02
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 84.64
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 84.59
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 84.38
PRK02290 344 3-dehydroquinate synthase; Provisional 84.24
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 84.01
PRK00073389 pgk phosphoglycerate kinase; Provisional 83.87
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 83.79
PLN02591250 tryptophan synthase 83.75
PF04551 359 GcpE: GcpE protein; InterPro: IPR004588 This prote 83.62
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 83.55
PRK00915 513 2-isopropylmalate synthase; Validated 83.53
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 83.39
PRK14057254 epimerase; Provisional 83.24
PRK02048 611 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 82.65
PRK15452 443 putative protease; Provisional 82.54
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 82.48
TIGR00126211 deoC deoxyribose-phosphate aldolase. Deoxyribose-p 82.36
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 81.97
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 81.92
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 81.89
PRK07028 430 bifunctional hexulose-6-phosphate synthase/ribonuc 81.77
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 81.72
cd04728248 ThiG Thiazole synthase (ThiG) is the tetrameric en 81.68
TIGR02660 365 nifV_homocitr homocitrate synthase NifV. This fami 81.16
PF03060330 NMO: Nitronate monooxygenase; InterPro: IPR004136 81.15
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 81.0
TIGR00973 494 leuA_bact 2-isopropylmalate synthase, bacterial ty 80.86
COG0826 347 Collagenase and related proteases [Posttranslation 80.65
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 80.11
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information 
Probab=100.00  E-value=4.8e-107  Score=856.45  Aligned_cols=335  Identities=52%  Similarity=0.797  Sum_probs=324.9

Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928           98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ  177 (453)
Q Consensus        98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~  177 (453)
                      +|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||+|||||+|.+.+
T Consensus        24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~  102 (509)
T PLN02762         24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG  102 (509)
T ss_pred             CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence            7899999999999999999999999999999999999999999999999999999998 999999999999999999975


Q ss_pred             --ceeecCCCEEEEEeecCCC--CccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccccee
Q 012928          178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL  253 (453)
Q Consensus       178 --~i~L~~G~~v~lt~~~~~~--~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgV  253 (453)
                        ++.|++||+|+|+.+...+  +.+.++++|++|+++|++||.||+|||.|.|+|.+++++.++|+|.+||.|+++|||
T Consensus       103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv  182 (509)
T PLN02762        103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL  182 (509)
T ss_pred             CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence              6999999999999864334  357899999999999999999999999999999999999999999999999999999


Q ss_pred             ec-------CCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC--CceEEEEecChhhhccH
Q 012928          254 NV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNL  324 (453)
Q Consensus       254 nl-------p~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~--~i~IIakIET~~gv~Nl  324 (453)
                      |+       |++.+++|.||+||++||+|++++++|||++|||++++||..+|++|.+.+.  +++||||||+++|++|+
T Consensus       183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl  262 (509)
T PLN02762        183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL  262 (509)
T ss_pred             eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence            99       9999999999999999999999999999999999999999999999998764  79999999999999999


Q ss_pred             HHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE
Q 012928          325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM  404 (453)
Q Consensus       325 deI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm  404 (453)
                      +||++++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||.||+||+|
T Consensus       263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM  342 (509)
T PLN02762        263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM  342 (509)
T ss_pred             HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcccCCCCHHHHHHHHHHHHHHHhcCC
Q 012928          405 LSGETAHGKFPLKAVKVMHTVALRTESSL  433 (453)
Q Consensus       405 Ls~ETA~G~yP~eaV~~m~~I~~~aE~~~  433 (453)
                      ||+|||+|+||+|||++|++||++||+.+
T Consensus       343 LSgETA~G~yPveaV~~m~~I~~~aE~~~  371 (509)
T PLN02762        343 LSGESAMGLYPEKALSVLRSVSLRMELWS  371 (509)
T ss_pred             EcchhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999864

>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06739 pyruvate kinase; Validated Back     alignment and domain information
>PLN02461 Probable pyruvate kinase Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02765 pyruvate kinase Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PRK14725 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PRK08187 pyruvate kinase; Validated Back     alignment and domain information
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>TIGR01588 citE citrate lyase, beta subunit Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase Back     alignment and domain information
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional Back     alignment and domain information
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi Back     alignment and domain information
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA Back     alignment and domain information
>PRK09255 malate synthase; Validated Back     alignment and domain information
>TIGR01344 malate_syn_A malate synthase A Back     alignment and domain information
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ] Back     alignment and domain information
>PLN02626 malate synthase Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK13655 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion [] Back     alignment and domain information
>PTZ00005 phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK07226 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional Back     alignment and domain information
>PRK00507 deoxyribose-phosphate aldolase; Provisional Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Back     alignment and domain information
>PLN03034 phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK08227 autoinducer 2 aldolase; Validated Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK00073 pgk phosphoglycerate kinase; Provisional Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK00915 2-isopropylmalate synthase; Validated Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>TIGR00126 deoC deoxyribose-phosphate aldolase Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 4e-87
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 9e-84
1pky_A 470 Pyruvate Kinase From E. Coli In The T-State Length 2e-79
1e0u_A 470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 5e-79
1e0t_A 470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 2e-78
1pkn_A 530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 1e-75
4b2d_D 548 Human Pkm2 With L-serine And Fbp Bound Length = 548 1e-75
3gqy_A 550 Activator-Bound Structure Of Human Pyruvate Kinase 1e-75
3srf_C 551 Human M1 Pyruvate Kinase Length = 551 2e-75
1pkm_A 530 The Refined Three-Dimensional Structure Of Cat Musc 2e-75
4g1n_A 518 Pkm2 In Complex With An Activator Length = 518 2e-75
3srd_A 551 Human M2 Pyruvate Kinase In Complex With Fructose 1 2e-75
1zjh_A 548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 2e-75
3u2z_A 533 Activator-Bound Structure Of Human Pyruvate Kinase 2e-75
3g2g_A 533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 2e-75
3n25_A 531 The Structure Of Muscle Pyruvate Kinase In Complex 8e-75
2g50_A 530 The Location Of The Allosteric Amino Acid Binding S 8e-75
1f3w_A 530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 9e-75
1t5a_A 567 Human Pyruvate Kinase M2 Length = 567 1e-74
1f3x_A 530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 1e-74
1aqf_A 530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 1e-74
3bjf_A 518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-74
3bjt_A 530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-74
4drs_A 526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 1e-69
3ma8_A 534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 1e-69
3pp7_A 498 Crystal Structure Of Leishmania Mexicana Pyruvate K 3e-69
1pkl_A 499 The Structure Of Leishmania Pyruvate Kinase Length 3e-69
3e0v_A 539 Crystal Structure Of Pyruvate Kinase From Leishmani 4e-69
2vgb_A 528 Human Erythrocyte Pyruvate Kinase Length = 528 9e-69
2vgg_A 528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 1e-68
2vgi_A 528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 1e-68
4ip7_A 543 Structure Of The S12d Variant Of Human Liver Pyruva 1e-68
2vgf_A 528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 4e-68
3qv9_A 499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 5e-68
4ima_A 543 The Structure Of C436m-hlpyk In Complex With Citrat 9e-68
3eoe_A 511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 2e-64
1a3w_A 500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 1e-63
3khd_A 520 Crystal Structure Of Pff1300w. Length = 520 2e-60
3qtg_A461 Crystal Structure Of Pyruvate Kinase From Pyrobacul 2e-40
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure 
Iteration: 1

 Score =  318 bits (815), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/342 (47%), Positives = 230/342 (67%), Gaps = 4/342 (1%)
Query: 94  GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153
           G +  RKTKIVCTIGP++ S EMI KL   GMNVARLN SHG H  H+  ID +++   +
Sbjct: 18  GSHMMRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKR 77
Query: 154 FEDKAVAIMLDTKGPEVRSGDVPQPII-LKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDV 212
             DK VAI+LDTKGPE+R+ ++   II L+ G E   ++     T +  SV Y++ +NDV
Sbjct: 78  L-DKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDV 136
Query: 213 EVGDILLVDGGMMSLAVKS--KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDW 270
           +VG  +L+D G++ L VK     K  VKC +++ GELK+++ +N+ G   +LP IT+KD 
Sbjct: 137 QVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDA 196
Query: 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330
           EDI+FG+   VDF A SFV+    V E+++ L+   A+I V  KIE+ + I N+  I+  
Sbjct: 197 EDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIEEILEV 256
Query: 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390
           SDG MVARGD+G E+P E VP++Q+D+IR+C  + KPVI AT ML+SM  +P  TRAE S
Sbjct: 257 SDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEAS 316
Query: 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432
           D+A A+ +G DAVMLSGETA G +P +AVK M  +A+  E++
Sbjct: 317 DVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAA 358
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum Aerophilum Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
3gg8_A 511 Pyruvate kinase; malaria, genomics, proteomics, gl 1e-163
1e0t_A 470 Pyruvate kinase, PK; phosphotransferase, glycolysi 1e-163
3khd_A 520 Pyruvate kinase; malaria, structural genomics, str 1e-162
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 1e-161
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 1e-159
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 1e-159
3hqn_D 499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 1e-159
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 1e-158
3gr4_A 550 Pyruvate kinase isozymes M1/M2; activator, acetyla 1e-158
3ma8_A 534 Pyruvate kinase; parasitology, pyruvate kiase, gly 1e-156
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 5e-05
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 7e-05
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 9e-05
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 9e-05
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 5e-04
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
 Score =  470 bits (1212), Expect = e-163
 Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 57  MRISHDNHAPKISLFEE--SLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSR 114
           M   H + + + +L+ +   +S I E  + +              +T+IVCT+GP+  + 
Sbjct: 1   MHHHHHHSSGRENLYFQGIRMSQILEPRSEE---------DWTAHRTRIVCTMGPACWNV 51

Query: 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGD 174
           + + K+ + GMNV RLN SHGDH +H +T+  ++E   Q  +  +AI+LDTKGPE+R+G 
Sbjct: 52  DTLVKMIDAGMNVCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILLDTKGPEIRTGF 111

Query: 175 VP--QPIILKEGQEFNFTIKRGV-STEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231
           +   +PI L++G          +   E T++ +Y      V+ G+ +L+  G +S+ V  
Sbjct: 112 LKDHKPITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLSVKVVE 171

Query: 232 KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVK 290
              D V     +   +  R+++N+      LP I +KD  DI  FG+    +F A SFV+
Sbjct: 172 VGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDILNFGIPMGCNFIAASFVQ 231

Query: 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV 350
            A  V  ++  L      I +I KIE+ + + N   I++ +DG M+ARGDLG E+P E V
Sbjct: 232 SADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIARGDLGMEIPPEKV 291

Query: 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410
            L Q+ +I +C  + KPVI AT MLESMI +P PTRAE +D+A AV +G D VMLSGETA
Sbjct: 292 FLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETA 351

Query: 411 HGKFPLKAVKVMHTVALRTESSLP 434
           +G+FP+  V+ M  +    E+ + 
Sbjct: 352 NGEFPVITVETMARICYEAETCVD 375
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} Length = 261 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Length = 267 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Length = 256 Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Length = 287 Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
3gr4_A 550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
3khd_A 520 Pyruvate kinase; malaria, structural genomics, str 100.0
3hqn_D 499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
4drs_A 526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3gg8_A 511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
1e0t_A 470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
1a3w_A 500 Pyruvate kinase; allosteric regulation, tranferase 100.0
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 99.75
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 99.69
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 99.68
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 99.67
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 99.65
1sgj_A284 Citrate lyase, beta subunit; trimer, TIM barrel, s 99.61
2xz9_A324 Phosphoenolpyruvate-protein kinase (PTS system EI 99.36
3qll_A316 Citrate lyase; beta barrel; 2.45A {Yersinia pestis 99.31
1u5h_A273 CITE; TIM barrel, structural genomics, PSI, protei 99.25
3qqw_A332 Putative citrate lyase; TIM beta/alpha-barrel, str 99.25
3r4i_A339 Citrate lyase; TIM beta/alpha-barrel, structural g 99.15
2ols_A794 Phosphoenolpyruvate synthase; MC structural genomi 99.15
2hwg_A575 Phosphoenolpyruvate-protein phosphotransferase; en 99.08
3oyz_A 433 Malate synthase; TIM barrel, transferase; HET: ACO 99.06
2wqd_A572 Phosphoenolpyruvate-protein phosphotransferase; ki 99.05
1vbg_A876 Pyruvate,orthophosphate dikinase; transferase, mai 98.58
1kbl_A873 PPDK, pyruvate phosphate dikinase; transferase, ph 98.47
3cuz_A 532 MSA, malate synthase A; TIM barrel, cytoplasm, gly 98.1
3cux_A 528 Malate synthase; TIM barrel, glyoxylate bypass, tr 98.01
1p7t_A 731 MSG, malate synthase G; TIM barrel, glyoxylate cyc 97.91
1h6z_A913 Pyruvate phosphate dikinase; transferase, tropical 97.67
2x0s_A913 Pyruvate phosphate dikinase; transferase, tropical 96.97
4af0_A556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 96.65
1jqo_A 970 Phosphoenolpyruvate carboxylase; beta barrel, carb 95.32
3odm_A 560 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 95.25
1jqn_A 883 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 94.71
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 94.58
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 94.13
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 94.13
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 94.0
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 93.59
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 93.48
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 93.16
3khj_A361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 92.84
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 92.41
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 92.4
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 92.37
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 92.24
3r2g_A361 Inosine 5'-monophosphate dehydrogenase; structural 91.95
2fli_A220 Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr 91.61
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 91.33
3ajx_A207 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf 91.0
2z6i_A332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 90.75
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 90.58
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 90.49
3ble_A 337 Citramalate synthase from leptospira interrogans; 90.28
2c6q_A351 GMP reductase 2; TIM barrel, metal-binding, NADP, 90.23
1jcn_A514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 90.16
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 89.57
3jr2_A218 Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon 89.35
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 89.17
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 88.99
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 88.85
1w8s_A263 FBP aldolase, fructose-bisphosphate aldolase class 88.52
1gte_A 1025 Dihydropyrimidine dehydrogenase; electron transfer 88.33
1rpx_A230 Protein (ribulose-phosphate 3-epimerase); chloropl 88.33
3eeg_A 325 2-isopropylmalate synthase; 11106D, beta barrel, P 88.28
1w8s_A263 FBP aldolase, fructose-bisphosphate aldolase class 88.26
1p1x_A260 Deoxyribose-phosphate aldolase; alpha-beta barrel, 87.97
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 87.29
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 87.26
3bw2_A369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 86.13
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 86.08
1q6o_A216 Humps, 3-keto-L-gulonate 6-phosphate decarboxylase 86.08
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 85.94
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 85.89
1vrd_A494 Inosine-5'-monophosphate dehydrogenase; TM1347, st 85.38
2gjl_A328 Hypothetical protein PA1024; 2-nitropropane dioxyg 85.14
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 84.81
1eep_A404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 84.72
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 84.6
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 84.36
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 84.28
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 83.93
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 83.56
1vcv_A226 Probable deoxyribose-phosphate aldolase; DERA, hyp 83.2
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 82.9
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 82.46
3r12_A260 Deoxyribose-phosphate aldolase; TIM beta/alpha-bar 82.17
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 81.93
1n7k_A234 Deoxyribose-phosphate aldolase; A.pernix, tetramer 81.82
1me8_A503 Inosine-5'-monophosphate dehydrogenase; alpha beta 81.73
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 81.29
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 81.05
3ngj_A239 Deoxyribose-phosphate aldolase; lyase, structural 80.97
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 80.89
1ypf_A336 GMP reductase; GUAC, purines, pyrimidines, nucleos 80.76
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 80.57
3rmj_A 370 2-isopropylmalate synthase; LEUA, truncation, neis 80.55
1ub3_A220 Aldolase protein; schiff base, deoxyribose phospha 80.05
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
Probab=100.00  E-value=4.8e-108  Score=869.06  Aligned_cols=349  Identities=43%  Similarity=0.681  Sum_probs=337.1

Q ss_pred             ccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhh------cCCCcEEEEee
Q 012928           91 GVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ------FEDKAVAIMLD  164 (453)
Q Consensus        91 ~~~~~~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~------~~~~~iaIllD  164 (453)
                      +.++|..+|||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|++.++      ++ +||+||+|
T Consensus        54 ~~~~~~~~rkTKIV~TiGPas~~~e~l~~Li~aGmnv~RlNfSHG~~e~h~~~i~~iR~a~~~~~~~~~~~-~~vaIllD  132 (550)
T 3gr4_A           54 IDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILY-RPVAVALD  132 (550)
T ss_dssp             TTSCCCSCCCSEEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHHHHHHHHHTTTTCTTTC-CCCEEEEE
T ss_pred             CCCCCccCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhhccccccC-ceEEEEEe
Confidence            566778899999999999999999999999999999999999999999999999999999998      66 99999999


Q ss_pred             cCCCeeeecCCCC----ceeecCCCEEEEEeecC---CCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeE
Q 012928          165 TKGPEVRSGDVPQ----PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLV  237 (453)
Q Consensus       165 LkGPkIRtG~l~~----~i~L~~G~~v~lt~~~~---~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v  237 (453)
                      |||||||||.+.+    ++.|++||+|+|+++..   .++.+.|+++|++|+++|++||+||+|||+|.|+|++++++.+
T Consensus       133 lkGPkIR~G~~~~~~~~~v~L~~G~~~~lt~~~~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v  212 (550)
T 3gr4_A          133 TKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFL  212 (550)
T ss_dssp             CCCSCCBBCCBTTBTTCCEEECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEE
T ss_pred             CCCCEEEEEecCCCCCCCeEEcCCCEEEEEeCCcccCCCCccEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEE
Confidence            9999999999953    79999999999998753   5788899999999999999999999999999999999999999


Q ss_pred             EEEEeeCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecC
Q 012928          238 KCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIES  317 (453)
Q Consensus       238 ~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET  317 (453)
                      .|+|+|||.|+++||||+||+.+++|.||+||++||+|++++|+|+|++|||++++|+.+++++|++.|.++.|||||||
T Consensus       213 ~~~V~~gG~L~s~KgvNlPg~~l~lpalTekD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~L~~~g~~i~IIAKIE~  292 (550)
T 3gr4_A          213 VTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIEN  292 (550)
T ss_dssp             EEEEEECEEECSSCBEECTTSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECS
T ss_pred             EEEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             hhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH
Q 012928          318 ADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR  397 (453)
Q Consensus       318 ~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~  397 (453)
                      ++||+|++||++++|||||||||||+|+|+++|+.+|++|+++|+++|||||+||||||||+++|.|||||++||||||.
T Consensus       293 ~eav~nldeIl~~sDgImVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvl  372 (550)
T 3gr4_A          293 HEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVL  372 (550)
T ss_dssp             HHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 012928          398 EGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPP  440 (453)
Q Consensus       398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~  440 (453)
                      ||+||+|||+|||.|+||+|||++|++||++||+.++|.+.+.
T Consensus       373 dG~DavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~  415 (550)
T 3gr4_A          373 DGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFE  415 (550)
T ss_dssp             HTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cCCcEEEEecCccCCCCHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            9999999999999999999999999999999999887755543
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A* Back     alignment and structure
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis} Back     alignment and structure
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A Back     alignment and structure
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha} Back     alignment and structure
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans} Back     alignment and structure
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A Back     alignment and structure
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A {Haloferax volcanii} PDB: 3oyx_A* 3pug_A Back     alignment and structure
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A Back     alignment and structure
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* Back     alignment and structure
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Back     alignment and structure
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Back     alignment and structure
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A Back     alignment and structure
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 Back     alignment and structure
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 453
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 6e-57
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 7e-22
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 2e-52
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 1e-22
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 3e-51
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 2e-23
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 2e-49
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 3e-22
d2g50a1102 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit 7e-20
d1a3xa1101 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's 7e-19
d1e0ta198 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escheric 1e-17
d2vgba1102 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human ( 5e-17
d1pkla199 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishman 4e-15
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

 Score =  186 bits (474), Expect = 6e-57
 Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 8/221 (3%)

Query: 219 LVDGGM------MSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWED 272
           L+  GM       S       +  +  +     EL    ++ +   +   P+++ KD  D
Sbjct: 40  LIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELG--VNIAIALDTKGPPAVSAKDRVD 97

Query: 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD 332
           ++FGV+  VD    SF++ A+ V +++  L     DI +I KIE+   + N+ SII  SD
Sbjct: 98  LQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESD 157

Query: 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI 392
           G MVARGDLG E+P E V + Q+ +I +C    KPVI AT MLESM  +P PTRAEVSD+
Sbjct: 158 GIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDV 217

Query: 393 AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433
           A AV  GAD VMLSGETA GK+P + V+ M  + L  +S+L
Sbjct: 218 ANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAL 258
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102 Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 101 Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 100.0
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 100.0
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 100.0
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 100.0
d1e0ta198 Pyruvate kinase (PK) {Escherichia coli [TaxId: 562 99.89
d2g50a1102 Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculu 99.89
d2vgba1102 Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 99.89
d1a3xa1101 Pyruvate kinase (PK) {Baker's yeast (Saccharomyces 99.88
d1pkla199 Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 99.88
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 99.68
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 99.62
d1sgja_231 Citrate lyase, beta subunit {Deinococcus radiodura 99.06
d1u5ha_223 Citrate lyase, beta subunit {Mycobacterium tubercu 98.91
d1kbla1364 Pyruvate phosphate dikinase, C-terminal domain {Cl 97.73
d1vbga1356 Pyruvate phosphate dikinase, C-terminal domain {Ma 97.42
d1h6za1366 Pyruvate phosphate dikinase, C-terminal domain {Tr 97.09
d1eepa_388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 96.04
d1zfja1365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 95.99
d1vrda1330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 95.84
d1jr1a1378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 95.49
d2cu0a1368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 94.16
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 92.38
d1pvna1362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 92.07
d1jqoa_ 936 Phosphoenolpyruvate carboxylase {Escherichia coli 91.7
d1jqna_ 880 Phosphoenolpyruvate carboxylase {Escherichia coli 89.39
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 88.26
d1o0ya_251 Deoxyribose-phosphate aldolase DeoC {Thermotoga ma 86.06
d1n7ka_234 Deoxyribose-phosphate aldolase DeoC {Archaeon Aero 85.29
d1yxya1230 Putative N-acetylmannosamine-6-phosphate 2-epimera 84.95
d1q6oa_213 3-keto-L-gulonate 6-phosphate decarboxylase {Esche 84.14
d1rpxa_230 D-ribulose-5-phosphate 3-epimerase {Potato (Solanu 84.01
d1tqja_221 D-ribulose-5-phosphate 3-epimerase {Synechocystis 83.87
d1p1xa_250 Deoxyribose-phosphate aldolase DeoC {Escherichia c 83.08
d1ub3a_211 Deoxyribose-phosphate aldolase DeoC {Thermus therm 81.72
d1xi3a_206 Thiamin phosphate synthase {Archaeon (Pyrococcus f 81.59
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-80  Score=601.71  Aligned_cols=243  Identities=49%  Similarity=0.778  Sum_probs=221.6

Q ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928           98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ  177 (453)
Q Consensus        98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~  177 (453)
                      ||||||||||||+|++++.|++|+++||||||||||||++++|+++|+++|+++++++ ++++|++||+||+        
T Consensus         1 mrkTKIIaTiGPas~~~~~l~~li~aGvdv~RlN~SHg~~~~~~~~i~~ir~~~~~~~-~~~~I~~Dl~gp~--------   71 (246)
T d1e0ta2           1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTG-KTAAILLDTKGPA--------   71 (246)
T ss_dssp             CCCSEEEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHHT-CCCEEEEECCCCS--------
T ss_pred             CCCCeEEEeeCCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCCcccccccccc--------
Confidence            6899999999999999999999999999999999999999999999999999999998 9999999999964        


Q ss_pred             ceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecCC
Q 012928          178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRG  257 (453)
Q Consensus       178 ~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp~  257 (453)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (246)
T d1e0ta2          72 --------------------------------------------------------------------------------   71 (246)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhcCEEEE
Q 012928          258 KSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMV  336 (453)
Q Consensus       258 ~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~sDgImI  336 (453)
                             ||++|.+||.||+++|+|||++|||++++|+..+|+++.+.+ .+++|||||||++|++|+++|++++|||||
T Consensus        72 -------ltekD~~~i~~a~~~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImI  144 (246)
T d1e0ta2          72 -------LAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMV  144 (246)
T ss_dssp             -------SCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEE
T ss_pred             -------cccCcchhhhHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEE
Confidence                   599999999999999999999999999999999999998875 579999999999999999999999999999


Q ss_pred             eCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHH
Q 012928          337 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL  416 (453)
Q Consensus       337 gRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~  416 (453)
                      +|||||+|+|+++||.+|++|++.|+++|||||+||||||||+.+|.|||||++|+||++.+|+|++|||+|||+|+||+
T Consensus       145 aRGDLg~ei~~e~vp~~Qk~ii~~~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~~P~  224 (246)
T d1e0ta2         145 ARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPL  224 (246)
T ss_dssp             EHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CH
T ss_pred             EccchhhhCCHHHHHHHHHHHHHHHHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccccccCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q 012928          417 KAVKVMHTVALRTESSLPVS  436 (453)
Q Consensus       417 eaV~~m~~I~~~aE~~~~~~  436 (453)
                      +||++|++||+++|+.+.++
T Consensus       225 ~~v~~l~~i~~~~E~~~~~~  244 (246)
T d1e0ta2         225 EAVSIMATICERTDRVMNSR  244 (246)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999987664
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Back     information, alignment and structure