Citrus Sinensis ID: 012949

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
ccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHccccccEECccccHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHccccEEEEEEcccHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHHcccEEECcccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccc
********GLDKLPSMSTIDRI*****************GSCWIE****************YTREAFPW******************SLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIA******
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MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Hydroxymethylglutaryl-CoA lyase, mitochondrial Involved in the catabolism of branched amino acids such as leucine.probableO81027
Hydroxymethylglutaryl-CoA lyase, mitochondrial Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.probableP35914
Hydroxymethylglutaryl-CoA lyase, mitochondrial Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.probableP38060

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
4.-.-.-Lyases.probable
4.1.-.-Carbon-carbon lyases.probable
4.1.3.-Oxo-acid-lyases.probable
4.1.3.4Hydroxymethylglutaryl-CoA lyase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2CW6, chain A
Confidence level:very confident
Coverage over the Query: 122-205,232-443
View the alignment between query and template
View the model in PyMOL
Template: 2NX9, chain A
Confidence level:very confident
Coverage over the Query: 123-253,268-450
View the alignment between query and template
View the model in PyMOL
Template: 3OA3, chain A
Confidence level:probable
Coverage over the Query: 105-204,216-380
View the alignment between query and template
View the model in PyMOL